Publications

All publications as of 2010
(until 2023: "Department of Environmental Microbiology"):

Accepted / in press

Papers in ISI listed journals

Index:

2025 (21)
2024 (48)
2023 (76)
2022 (87)
2021 (64)
2020 (60)
2019 (57)
2018 (64)
2017 (56)
2016 (52)
2015 (58)
2014 (51)
2013 (54)
2012 (38)
2011 (35)
2010 (50)

You could use our publication index for further requests.

2025 (21)

Abbaszade, G., Stückrath, K., Müller, S. (2025):
Microbial biopsy data [Data set]
Zenodo 10.5281/zenodo.14919103
Abbaszade, G., Stückrath, K., Müller, S. (2025):
Bacterial colony biopsies: Spatial discrimination of heterogeneous cell types by cytometric fingerprinting
Methods Ecol. Evol. 16 (5), 972 - 987 10.1111/2041-210x.70022
Anuforo, P.C., Würz, B., Wick, L.Y., Kallies, R. (2025):
Draft genome sequences of Pseudomonas chengduensis strain BW1 and Sphingobium sp. strain MK2 isolated from oil sands process-affected water
Microbiol. Resour. Ann. 14 (2), e00677-24 10.1128/mra.00677-24
Espinoza Miranda, S.S., Abbaszade, G., Hess, W.R., Drescher, K., Saliba, A.-E., Zaburdaev, V., Chai, L., Dreisewerd, K., Grüneberger, A., Westendorf, C., Müller, S., Mascher, T. (2025):
Resolving spatiotemporal dynamics in bacterial multicellular populations: approaches and challenges
Microbiol. Mol. Biol. Rev. 89 (1), e00138-24 10.1128/mmbr.00138-24
Houben, T., Boog, J., Khurana, S., Ebeling, P., Schmid, J.S. (2025):
timohouben/sm-module: Final Release
Version: v1.0 Zenodo 10.5281/zenodo.14871758
Houben, T., Ebeling, P., Khurana, S., Schmid, J.S., Boog, J. (2025):
Digital Soil Moisture Mapping - Data accompanying Houben et al. 2025, Vadose Zone Journal [Data set]
Zenodo 10.5281/zenodo.14871615
Houben, T., Ebeling, P., Khurana, S., Schmid, J.S., Boog, J. (2025):
Machine-learning based spatiotemporal prediction of soil moisture in a grassland hillslope
Vadose Zone J. 24 (2), e70011 10.1002/vzj2.70011
Kasmanas, J.C., Magnúsdóttir, S., Zhang, J., Smalla, K., Schloter, M., Stadler, P.F., de Carvalho, A.C.P.L.F., Nunes da Rocha, U. (2025):
Integrating comparative genomics and risk classification by assessing virulence, antimicrobial resistance, and plasmid spread in microbial communities with gSpreadComp
GigaScience 14 , giaf072 10.1093/gigascience/giaf072
Kasmanas, J.C., Magnúsdóttir, S., Zhang, J., Smalla, K., Schloter, M., Stadler, P.F., de Carvalho, A.C.P.L.F., Nunes da Rocha, U. (2025):
Supporting data for "Integrating comparative genomics and risk classification by assessing virulence, antimicrobial resistance, and plasmid spread in microbial communities with gSpreadComp"
GigaScience Database 10.5524/102699
Leiter, N., Wohlschläger, M., Versen, M., Harter, S.D., Kießlich, T., Lederer, F., Clauß, S., Schlosser, D., Armanu, E.G., Eberlein, C., Heipieper, H.J., Löder, M.G.J., Laforsch, C. (2025):
Effects of defined organic layers on the fluorescence lifetime of plastic materials
Anal. Bioanal. Chem. 417 , 3651 - 3663 10.1007/s00216-025-05888-y
Li, Y., Tao, C., Li, S., Chen, W., Fu, D., Jafvert, C.T., Zhu, T. (2025):
Feasibility study of machine learning to explore relationships between antimicrobial resistance and microbial community structure in global wastewater treatment plant sludges
Bioresour. Technol. 417 , art. 131878 10.1016/j.biortech.2024.131878
Moeller, L., Wollschläger, N., Hecht, C., Schlosser, D., Dietrich, P., Friesen, J., Trabitzsch, R., Bernhard, K., Otto, P. (2025):
Research green roof in Leipzig, Germany
Ecol. Eng. 220 , art. 107729 10.1016/j.ecoleng.2025.107729
Pieńkowska, A., Fleischmann, J., Drabesch, S., Merbach, I., Wang, G., Nunes da Rocha, U., Reitz, T., Muehe, E.M. (2025):
Long-term organic fertilization shields soil prokaryotes from metal stress while mineral fertilization exacerbates it
Environ. Pollut. 382 , art. 126747 10.1016/j.envpol.2025.126747
Santoro, E.P., Cárdenas, A., Villela, H.D.M., Vilela, C.L.S., Ghizelini, A.M., Duarte, G.A.S., Perna, G., Saraiva, J.P., Thomas, T., Voolstra, C.R., Peixoto, R.S. (2025):
Inherent differential microbial assemblages and functions associated with corals exhibiting different thermal phenotypes
Sci. Adv. 11 (3), eadq2583 10.1126/sciadv.adq2583
Shan, Y., Hao, H., He, J., Hu, N., Liu, P., Zhang, M., Jiao, W., Yin, Y. (2025):
Thermal enhanced electrokinetic bacterial transport in porous media
Environ. Sci. Technol. 59 (3), 1683 - 1692 10.1021/acs.est.4c07954
Sharma, P., Reitz, T., Singh, S.P., Worrich, A., Muehe, E.M. (2025):
Going beyond improving soil health: cover plants as contaminant removers in agriculture
Trends Plant Sci. 30 (5), 539 - 552 10.1016/j.tplants.2025.01.009
Simoneit, M., Langer, H., Ulrich, N., Böhme, A. (2025):
Refining the amino reactivity-based identification of respiratory sensitizers
Chem. Res. Toxicol. 38 (6), 1046 - 1060 10.1021/acs.chemrestox.4c00545
Tang, Q., Lu, T., Zhang, J., Huang, H., Guo, B., Nunes da Rocha, U., Nikolausz, M., Shen, P., Wei, Y., Deng, Y., Richnow, H.H. (2025):
Response of antibiotic resistance genes expression and mediating role of viral community to antibiotics and heavy metals in anaerobic digestion
Chem. Eng. J. 509 , art. 161396 10.1016/j.cej.2025.161396
Wang, G., Haenelt, S., Borim Corrêa, F., Nunes da Rocha, U., Musat, F., Zhang, J., Müller, J.A., Musat, N. (2025):
Riverine antibiotic resistome along an anthropogenic gradient
Front. Microbiol. 16 , art. 1516033 10.3389/fmicb.2025.1516033
Yang, S., Rupp, A., Kästner, M., Harms, H., Miltner, A., Maskow, T. (2025):
Experimental access to cellulose oxidation and the dynamics of microbial carbon and energy use in artificial soil under varying temperature, water content, and C/N ratio
Soil Biol. Biochem. 203 , art. 109717 10.1016/j.soilbio.2025.109717
Zhu, T., Li, S., Tao, C., Chen, W., Chen, M., Zong, Z., Wang, Y., Li, Y., Yan, B. (2025):
Understanding the mechanism of microplastic-associated antibiotic resistance genes in aquatic ecosystems: Insights from metagenomic analyses and machine learning
Water Res. 268, Part A , art. 122570 10.1016/j.watres.2024.122570

to index

2024 (48)

Abdulkadir, N., Saraiva, J.P., Zhang, J., Stolte, S., Gillor, O., Harms, H., Nunes da Rocha, U. (2024):
Genome-centric analyses of 165 metagenomes show that mobile genetic elements are crucial for the transmission of antimicrobial resistance genes to pathogens in activated sludge and wastewater
Microbiol. Spectr. 12 (3), e02918-23 10.1128/spectrum.02918-23
Acuña, J.J., Rilling, J.I., Inostroza, N.G., Zhang, Q., Wick, L.Y., Sessitsch, A., Jorquera, M.A. (2024):
Variovorax sp. strain P1R9 applied individually or as part of bacterial consortia enhances wheat germination under salt stress conditions
Sci. Rep. 14 , art. 2070 10.1038/s41598-024-52535-0
Akay, C., Ulrich, N., Ding, C., Nunes da Rocha, U., Adrian, L. (2024):
Sequential anaerobic-aerobic treatment enhances sulfamethoxazole removal: From batch cultures to observations in a large-scale wastewater treatment plant
Environ. Sci. Technol. 58 (28), 12609 - 12620 10.1021/acs.est.4c00368
Avila Santos, A.P., de Almeida, B.L.S., Bonidia, R.P., Stadler, P.F., Stefanic, P., Mandic-Mulec, I., Nunes da Rocha, U., Sanches, D.S., de Carvalho, A.C.P.L.F. (2024):
BioDeepfuse: a hybrid deep learning approach with integrated feature extraction techniques for enhanced non-coding RNA classification
RNA Biol. 21 (1), 1 - 12 10.1080/15476286.2024.2329451
Carreira, C., Lønborg, C., Acharya, B., Aryal, L., Buivydaite, Z., Borim Corrêa, F., Chen, T., Lorenzen Elberg, C., Emerson, J.B., Hillary, L., Khadka, R.B., Langlois, V., Mason-Jones, K., Netherway, T., Sutela, S., Trubl, G., wa Kang’eri, A., Wang, R., White III, R.A., Winding, A., Zhao, T., Sapkota, R. (2024):
Integrating viruses into soil food web biogeochemistry
Nat. Microbiol. 9 (8), 1918 - 1928 10.1038/s41564-024-01767-x
Cerecetto, V., Leoni, C., Jurburg, S.D., Kampouris, I.D., Smalla, K., Babin, D. (2024):
Pasture-crop rotations modulate the soil and rhizosphere microbiota and preserve soil structure supporting oat cultivation in the Pampa biome
Soil Biol. Biochem. 195 , art. 109451 10.1016/j.soilbio.2024.109451
Cohen, Y., Johnke, J., Abed-Rabbo, A., Pasternak, Z., Chatzinotas, A., Jurkevitch, E. (2024):
Unbalanced predatory communities and a lack of microbial degraders characterize the microbiota of a highly sewage-polluted Eastern-Mediterranean stream
FEMS Microbiol. Ecol. 100 (6), fiae069 10.1093/femsec/fiae069
Drabesch, S., Lechtenfeld, O.J., Bibaj, E., Ninin, J.M.L., Pachecco, J.L., Fendorf, S., Planer-Friedrich, B., Kappler, A., Muehe, E.M. (2024):
Climate induced microbiome alterations increase cadmium bioavailability in agricultural soils with pH below 7
Commun. Earth Environ. 5 , art. 637 10.1038/s43247-024-01794-w
Duong, H.L., Paufler, S., Harms, H., Maskow, T., Schlosser, D. (2024):
Biocalorimetry-aided monitoring of fungal pretreatment of lignocellulosic agricultural residues
Appl. Microbiol. Biotechnol. 108 (1), art. 394 10.1007/s00253-024-13234-y
Florentino, B.R., Bonidia, R.P., Sanches, N.H., Nunes da Rocha, U., de Carvalho, A.C.P.L.F. (2024):
BioPrediction-RPI: Democratizing the prediction of interaction between non-coding RNA and protein with end-to-end machine learning
Comp. Struct. Biotechnol. J. 23 , 2267 - 2276 10.1016/j.csbj.2024.05.031
Florentino, B.R., Bonidia, R.P., Sanches, N.H., Nunes da Rocha, U., de Carvalho, A.C.P.L.F. (2024):
Corrigendum to “BioPrediction-RPI: Democratizing the prediction of interaction between non-coding RNA and protein with end-to-end machine learning” [Comput Struct Biotechnol J, vol. 23, pp 2267-2276]
Comp. Struct. Biotechnol. J. 23 , 3019 10.1016/j.csbj.2024.07.015
Garcia-Garcia, G., Parra-López, C., Siddiqui, M.A., Lin, C.S.K., Maalej, H., Njeh, F., Galve, E., Ghrab, S., Belhassen, S., Hassoun, A., Rojas-Serrano, F., Rodríguez-Pleguezuelo, C.R., Sayadi, S. (2024):
Improving waste management strategies in the food sector: case studies from Spain, Tunisia and Hong Kong
J. Mater. Cycles Waste Manag. 26 (4), 2265 - 2277 10.1007/s10163-024-01965-z
Golparvar, A., Kästner, M., Thullner, M. (2024):
P3D-BRNS v1.0.0: a three-dimensional, multiphase, multicomponent, pore-scale reactive transport modelling package for simulating biogeochemical processes in subsurface environments
Geosci. Model Dev. 17 (2), 881 - 898 10.5194/gmd-17-881-2024
Gonzalez-Gonzalez, S., Zhang, Q., Acuña, J.J., Sadowsky, M.J., Wick, L.Y., Jorquera, M.A. (2024):
Mycelia migratory bacteria in compost and compost–amended rhizosphere soil in a table grape orchard
J. Soil Sci. Plant Nutr. 24 (3), 4666 - 4680 10.1007/s42729-024-01862-2
Grafmüller, J., Möllmer, J., Muehe, E.M., Kammann, C.I., Kray, D., Schmidt, H.-P., Hagemann, N. (2024):
Granulation compared to co-application of biochar plus mineral fertilizer and its impacts on crop growth and nutrient leaching
Sci. Rep. 14 , art. 16555 10.1038/s41598-024-66992-0
Grimm, H., Drabesch, S., Nicol, A., Straub, D., Joshi, P., Planer-Friedrich, B., Muehe, E.M. (2024):
Arsenic immobilization and greenhouse gas emission depend on quantity and frequency of nitrogen fertilization in paddy soil [Data set]
Zenodo 10.5281/zenodo.10679656
Grimm, H., Drabesch, S., Nicol, A., Straub, D., Joshi, P., Zarfl, C., Planer-Friedrich, B., Muehe, E.M., Kappler, A. (2024):
Arsenic immobilization and greenhouse gas emission depend on quantity and frequency of nitrogen fertilization in paddy soil
Heliyon 10 (16), e35706 10.1016/j.heliyon.2024.e35706
He, J., Castilla Alcantara, J.C., Ortega-Calvo, J.J., Harms, H., Wick, L.Y. (2024):
DC electric fields promote biodegradation of waterborne naphthalene in biofilter systems
Environ. Sci. Technol. 58 (41), 18234 - 18243 10.1021/acs.est.4c02924
Hoffstadt, K., Nikolausz, M., Krafft, S., Bonatelli, M.L., Kumar, V., Harms, H., Kuperjans, I. (2024):
Optimization of the ex situ biomethanation of hydrogen and carbon dioxide in a novel meandering plug flow reactor: Start-up phase and flexible operation
Bioengineering 11 (2), art. 165 10.3390/bioengineering11020165
Jurburg, S.D., Álvarez Blanco, M.J., Chatzinotas, A., Kazem, A., Babin, D., König-Ries, B., Smalla, K., Cerecetto, V., Fernandez-Gnecco, G., Covacevich, F., Viruel, E., Bernaschina, Y., Leoni, C., Garaycochea, S., Terra, J.A., Fresia, P., Figuerola, E.L.M., Wall, L.G., Covelli, J.M., Agnello, A.C., Nieto, E.E., Festa, S., Dominici, L.E., Allegrini, M., Zabaloy, M.C., Morales, M.E., Erijman, L., Coniglio, A., Cassán, F.D., Nievas, S., Roldán, D.M., Menes, R., Jauri, P.V., Marrero, C.S., Massa, A.M., Morel Revetria, M.A., Fernández-Scavino, A., Pereira-Mora, L., Martínez, S., Frene, J.P., Datathon 2022 Consortium, (2024):
Datathons: fostering equitability in data reuse in ecology
Trends Microbiol. 32 (5), 415 - 418 10.1016/j.tim.2024.02.010
Jurburg, S.D., Blowes, S.A., Shade, A., Eisenhauer, N., Chase, J.M. (2024):
Synthesis of recovery patterns in microbial communities across environments
Microbiome 12 , art. 79 10.1186/s40168-024-01802-3
Keller, N.S., Lüders, K., Hornbruch, G., Birnstengel, S., Vogt, C., Ebert, M., Kallies, R., Dahmke, A., Richnow, H.H. (2024):
Rapid consumption of dihydrogen injected into a shallow aquifer by ecophysiologically different microbes
Environ. Sci. Technol. 58 (1), 333 - 341 10.1021/acs.est.3c04340
Khan, M.J., Brodie, G., Jurburg, S.D., Chen, Q., Hu, H.-W., Gupta, D., Mattner, S.W., He, J.-Z. (2024):
Assessing the effects of microwave heat disturbance on soil microbial communities in Australian agricultural environments: A microcosm study
Appl. Soil Ecol. 198 , art. 105386 10.1016/j.apsoil.2024.105386
Khurana, S., Heße, F., Hildebrandt, A., Thullner, M. (2024):
Microbial mediated carbon and nitrogen cycling in the spatially heterogenous vadose zone: A modeling study
Vadose Zone J. 23 (2), e20315 10.1002/vzj2.20315
Le, A.V., Muehe, E.M., Bone, S., Drabesch, S., Fischer, S., Kappler, A. (2024):
Field and laboratory evidence for manganese redox cycling controlling iron and arsenic retention in household sand filters
ACS ES&T Water 4 (1), 33 - 43 10.1021/acsestwater.3c00245
Nieto, E.E. (2024):
Nieto GC-FID [Data set]
Zenodo 10.5281/zenodo.12220242
Nieto, E.E., Jurburg, S.D., Steinbach, N., Festa, S., Morelli, I.S., Coppotelli, B.M., Chatzinotas, A. (2024):
DNA stable isotope probing reveals the impact of trophic interactions on bioaugmentation of soils with different pollution histories
Microbiome 12 , art. 146 10.1186/s40168-024-01865-2
Ninin, J.M.L., Muehe, E.M., Kölbl, A., Mori, A.H., Nicol, A., Gilfedder, B., Pausch, J., Urbanski, L., Lueders, T., Planer-Friedrich, B. (2024):
Changes in arsenic mobility and speciation across a 2000-year-old paddy soil chronosequence
Sci. Total Environ. 908 , art. 168351 10.1016/j.scitotenv.2023.168351
Nunes da Rocha, U., Kasmanas, J.C., Kallies, R., Saraiva, J.P., Brizola Toscan, R., Štefanič, P., Fleming Bicalho, M., Borim Correa, F., Baştürk, M.N., Fousekis, E., Viana Barbosa, L.M., Plewka, J., Probst, A.J., Baldrian, P., Stadler, P.F., CLUE-TERRA consortium, (2024):
MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy
Mol. Ecol. Resour. 24 (2), e13904 10.1111/1755-0998.13904
Nunes da Rocha, U., Kasmanas, J.C., Toscan, R., Sanches, D.S., Magnúsdóttir, S., Saraiva, J.P. (2024):
Simulation of 69 microbial communities indicates sequencing depth and false positives are major drivers of bias in prokaryotic metagenome-assembled genome recovery
PLoS Comput. Biol. 20 (10), e1012530 10.1371/journal.pcbi.1012530
Okeke, M., Eze, P.M., Chukwudebelu, A.E., Nwankwo, C.J., Eze, N.K., Okafor, U.U., Abonyi, I.C., Okereke, E.E., Obasi, K.O., Ede, O.A., Ejikeugwu, C.P., Ilo, C.I., Okafor, J.O. (2024):
Tuberculosis and HIV/AIDS coinfection in patients attending Directly Observed Treatment Short-course (DOTS) centers in Anambra State, Nigeria: A retrospective study
Health Sci Rep. 7 (6), e2201 10.1002/hsr2.2201
Oliveira, V., Cleary, D.F.R., Polónia, A.R.M., Huang, Y.M., Nunes da Rocha, U., de Voogd, N.J., Gomes, N.C.M. (2024):
Unravelling a latent pathobiome across coral reef biotopes
Environ. Microbiol. 26 (12), e70008 10.1111/1462-2920.70008
Oprei, A., Schreckinger, J., Kamjunke, N., Worrich, A., Mutz, M., Risse-Buhl, U. (2024):
Migrating ripples create streambed heterogeneity altering microbial diversity and metabolic activity
Limnol. Oceanogr. 69 (8), 1882 - 1899 10.1002/lno.12631
Ozbayram, E.G., Kleinsteuber, S., Sträuber, H., Grosch Schroeder, B., Nunes da Rocha, U., Borim Corrêa, F., Harms, H., Nikolausz, M. (2024):
Three-domain microbial communities in the gut of Pachnoda marginata larvae: A comparative study revealing opposing trends in gut compartments
Environ. Microbiol. Rep. 16 (4), e13324 10.1111/1758-2229.13324
Rau, F., Elsner, C., Meister, T.L., Gömer, A., Kallies, R., Dittmer, U., Steinmann, E., Todt, D. (2024):
Monitoring of hepatitis E virus in wastewater can identify clinically relevant variants
Liver Int. 44 (3), 637 - 643 10.1111/liv.15842
Rojas-Serrano, F., Garcia-Garcia, G., Parra-López, C., Sayadi-Gmada, S. (2024):
Sustainability, circular economy and bioeconomy: A conceptual review and integration into the notion of sustainable circular bioeconomy
New Medit 23 (2), 3 - 22 10.30682/nm2402a
Shan, Y., Hao, H., Yin, Y., Hu, N., Zhan, M., Ma, D., Yin, Y., Jiao, W., Wick, L.Y. (2024):
Effects of temperature and DC electric fields on perfluorooctanoic acid sorption kinetics to activated carbon
Environ. Sci. Technol. 58 (13), 5987 - 5995 10.1021/acs.est.3c10590
Shan, Y., Yin, Y., Wei, J., Ma, D., Zhan, M., Yin, Y., Yang, L., Jiao, W., Wick, L.Y. (2024):
Mechanisms of heating-electrokinetic co-driven perfluorooctanoic acid (PFOA) adsorption on zeolite
J. Environ. Sci. 146 , 264 - 271 10.1016/j.jes.2023.10.024
Skliros, D., Kostakou, M., Kokkari, C., Tsertou, M.I., Pavloudi, C., Zafeiropoulos, H., Katharios, P., Flemetakis, E. (2024):
Unveiling emerging opportunistic fish pathogens in aquaculture: A comprehensive seasonal study of microbial composition in Mediterranean fish hatcheries
Microorganisms 12 (11), art. 2281 10.3390/microorganisms12112281
Teixeira, G.M., Montanari, G.C.C., Nicoletto, M.L.A., da Silva, D.V., Noriler, S.A., de Oliveira, J.P., da Silva Rodrigues, M.V., Sanches, D.S., de Padua Pereira, U., Nunes da Rocha, U., de Oliveira, A.G. (2024):
Draft genome of Bacillus velezensis CMRP6330, a suitable biocontrol agent for disease management in crops
Microbiol. Resour. Ann. 13 (12), e00657-24 10.1128/mra.00657-24
Vučić, V., Harms, H., Müller, S. (2024):
Biological recovery of phosphorus (BioP-Rec) from wastewater streams using brewer’s yeast on pilot-scale
Eng. Life Sci. 24 (2), e2300208 10.1002/elsc.202300208
Vuilleumier, S., Barthelmebs, L., Corcoll, N., Hery, M., Karpouzas, D.G., Wick, L.Y. (2024):
Editorial: thematic issue on microbial ecotoxicology
FEMS Microbiol. Ecol. 100 (8), fiae097 10.1093/femsec/fiae097
Wen, X., Chen, M., Ma, B., Xu, J., Zhu, T., Zou, Y., Liao, X., Wang, Y., Worrich, A., Wu, Y. (2024):
Removal of antibiotic resistance genes during swine manure composting is strongly impaired by high levels of doxycycline residues
Waste Manage. 177 , 76 - 85 10.1016/j.wasman.2024.01.037
Wen, X., Xu, J., Wang, Y., Yang, X., Peng, G., Li, S., Ma, B., Zou, Y., Liao, X., Wang, Y., Worrich, A., Wu, Y. (2024):
Community coalescence and plant host filtering determine the spread of tetracycline resistance genes from pig manure into the microbiome continuum of the soil–plant system
Microbiol. Res. 284 , art. 127734 10.1016/j.micres.2024.127734
Wen, X., Xu, J., Worrich, A., Li, X., Yuan, X., Ma, B., Zou, Y., Wang, Y., Liao, X., Wu, Y. (2024):
Priority establishment of soil bacteria in rhizosphere limited the spread of tetracycline resistance genes from pig manure to soil-plant systems based on synthetic communities approach
Environ. Int. 187 , art. 108732 10.1016/j.envint.2024.108732
Yang, S., Di Lodovico, E., Rupp, A., Harms, H., Fricke, C., Miltner, A., Kaestner, M., Maskow, T. (2024):
Enhancing insights: exploring the information content of calorespirometric ratio in dynamic soil microbial growth processes through calorimetry
Front. Microbiol. 15 , art. 1321059 10.3389/fmicb.2024.1321059
Ye, Y., Ghrayeb, M., Miercke, S., Arif, S., Müller, S., Mascher, T., Chai, L., Zaburdaev, V. (2024):
Residual cells and nutrient availability guide wound healing in bacterial biofilms
Soft Matter 20 (5), 1047 - 1060 10.1039/D3SM01032E
Zhang, J., Lu, T., Song, Y., Nunes da Rocha, U., Liu, J., Nikolausz, M., Wei, Y., Richnow, H.H. (2024):
Viral communities contribute more to the lysis of antibiotic-resistant bacteria than the transduction of antibiotic resistance genes in anaerobic digestion revealed by metagenomics
Environ. Sci. Technol. 58 (5), 2346 - 2359 10.1021/acs.est.3c07664

to index

2023 (76)

Abdulkadir, N., Saraiva, J.P., Schattenberg, F., Brizola Toscan, R., Borim Correa, F., Harms, H., Müller, S., Nunes da Rocha, U. (2023):
Combining flow cytometry and metagenomics improves recovery of metagenome-assembled genomes in a cell culture from activated sludge
Microorganisms 11 (1), art. 175 10.3390/microorganisms11010175
Álvarez-Barragán, J., Cravo-Laureau, C., Xiong, B., Wick, L.Y., Duran, R. (2023):
Marine fungi select and transport aerobic and anaerobic bacterial populations from polycyclic aromatic hydrocarbon-contaminated sediments
mBio 14 (2), e02761-22 10.1128/mbio.02761-22
Amarante Colpo, R. (2023):
rcolpo/pgp_reconstruction: First public release
Version: v0.0.4-beta Zenodo 10.5281/zenodo.8205880
Avila Santos, A.P., Kabiru Nata’ala, M., Kasmanas, J.C., Bartholomäus, A., Keller-Costa, T., Jurburg, S.D., Tal, T., Camarinha-Silva, A., Saraiva, J.P., de Carvalho, A.C.P.L.F., Stadler, P.F., Sipoli Sanches, D., Nunes da Rocha, U. (2023):
The AnimalAssociatedMetagenomeDB reveals a bias towards livestock and developed countries and blind spots in functional-potential studies of animal-associated microbiomes
Animal Microbiome 5 , art. 48 10.1186/s42523-023-00267-3
Baleeiro, F.C.F., Raab, J., Kleinsteuber, S., Neumann, A., Sträuber, H. (2023):
Mixotrophic chain elongation with syngas and lactate as electron donors
Microb. Biotechnol. 16 (2), 322 - 336 10.1111/1751-7915.14163
Baleeiro, F.C.F., Varchmin, L., Kleinsteuber, S., Sträuber, H., Neumann, A. (2023):
Formate-induced CO tolerance and methanogenesis inhibition in fermentation of syngas and plant biomass for carboxylate production
Biotechnol. Biofuels Bioprod. 16 , art. 26 10.1186/s13068-023-02271-w
Bates, K.A., Friesen, J., Loyau, A., Butler, H., Vredenburg, V.T., Laufer, J., Chatzinotas, A., Schmeller, D.S. (2023):
Environmental and anthropogenic factors shape the skin bacterial communities of a semi-arid amphibian species
Microb. Ecol. 86 (2), 1393 - 1404 10.1007/s00248-022-02130-5
Becker, D., Popp, D., Bonk, F., Kleinsteuber, S., Harms, H., Centler, F. (2023):
Metagenomic analysis of anaerobic microbial communities degrading short-chain fatty acids as sole carbon sources
Microorganisms 11 (2), art. 420 10.3390/microorganisms11020420
Bonatelli, M.L., Rohwerder, T., Popp, D., Liu, Y., Akay, C., Schultz, C., Liao, K.-P., Ding, C., Reemtsma, T., Adrian, L., Kleinsteuber, S. (2023):
Recently evolved combination of unique sulfatase and amidase genes enables bacterial degradation of the wastewater micropollutant acesulfame worldwide
Front. Microbiol. 14 , art. 1223838 10.3389/fmicb.2023.1223838
Borer, B., Magnúsdóttir, S. (2023):
Data associated with publication "The media composition as a crucial element in high-throughput metabolic network reconstruction"
Zenodo 10.5281/zenodo.7515886
Borer, B., Magnúsdóttir, S. (2023):
The media composition as a crucial element in high-throughput metabolic network reconstruction
Interface Focus 13 (2), art. 20220070 10.1098/rsfs.2022.0070
Boto, S.T., Bardl, B., Harnisch, F., Rosenbaum, M.A. (2023):
Microbial electrosynthesis with Clostridium ljungdahlii benefits from hydrogen electron mediation and permits a greater variety of products
Green Chem. 25 (11), 4375 - 4386 10.1039/D3GC00471F
Bozan, M., Schmidt, M., Musat, N., Schmid, A., Adrian, L., Bühler, K. (2023):
Spatial organization and proteome of a dual-species cyanobacterial biofilm alter among N₂-fixing and non-fixing conditions
mSystems 8 (3), art. 00302-23 10.1128/msystems.00302-23
Breulmann, M., Kallies, R., Bernhard, K., Gasch, A., Müller, R.A., Harms, H., Chatzinotas, A., van Afferden, M. (2023):
A long-term passive sampling approach for wastewater-based monitoring of SARS-CoV-2 in Leipzig, Germany
Sci. Total Environ. 887 , art. 164143 10.1016/j.scitotenv.2023.164143
Buivydaitė, Ž., Aryal, L., Borim Corrêa, F., Chen, T., Langlois, V., Elberg, C.L., Netherway, T., Wang, R., Zhao, T., Acharya, B., Emerson, J.B., Hillary, L., Khadka, R.B., Mason-Jones, K., Sapkota, R., Sutela, S., Trubl, G., White III, R.A., Winding, A., Carreira, C. (2023):
Meeting report: The first soil viral workshop 2022
Virus Res. 331 , art. 199121 10.1016/j.virusres.2023.199121
Çelik, G., Stolte, S., Müller, S., Schattenberg, F., Markiewicz, M. (2023):
Environmental persistence assessment of heterocyclic polyaromatic hydrocarbons – Ultimate and primary biodegradability using adapted and non-adapted microbial communities
J. Hazard. Mater. 460 , art. 132370 10.1016/j.jhazmat.2023.132370
Chafra, F., Borim Correa, F., Oni, F., Konu Karakayalı, Ö., Stadler, P.F., Nunes da Rocha, U. (2023):
StandEnA: a customizable workflow for standardized annotation and generating a presence–absence matrix of proteins
Bioinform. Adv. 3 (1), vbad069 10.1093/bioadv/vbad069
Chávez Morejón, M., Franz, A., Karande, R., Harnisch, F. (2023):
Integrated electrosynthesis and biosynthesis for the production of adipic acid from lignin-derived phenols
Green Chem. 25 (12), 4662 - 4666 10.1039/D3GC01105D
Chávez Morejón, M., Kurig, N., Tschauder, Y.S., Harnisch, F., Palkovits, R. (2023):
Electrochemical cellobiose valorization: Anodic oxidation to cellobionic acid and cathodic reduction to cellobitol
ChemistrySelect 8 (27), e202301823 10.1002/slct.202301823
Christgen, B., Spurr, M., Milner, E.M., Izadi, P., McCann, C., Yu, E., Curtis, T., Scott, K., Head, I.M. (2023):
Does pre-enrichment of anodes with acetate to select for Geobacter spp. enhance performance of microbial fuel cells when switched to more complex substrates?
Front. Microbiol. 14 , art. 1199286 10.3389/fmicb.2023.1199286
Dai, S., Harnisch, F., Bin-Hudari, M.S., Keller, N.-S., Vogt, C., Korth, B. (2023):
Improving the performance of bioelectrochemical sulfate removal by applying flow mode
Microb. Biotechnol. 16 (3), 595 - 604 10.1111/1751-7915.14157
de Carvalho, I., Apaza-Castillo, G.A., Paz, I.C.P., Guimarães, A.M., Quecine, M.C., Bonatelli, M.L. (2023):
Draft genome sequence of the plant growth promoter and biocontrol agent Bacillus velezensis strain BIB0110
Microbiol. Resour. Ann. 12 (6), e00231-23 10.1128/mra.00231-23
Dzofou Ngoumelah, D., Harnisch, F., Sulheim, S., Heggeset, T.M.B., Aune, I.H., Wentzel, A., Kretzschmar, J. (2023):
A unified and simple medium for growing model methanogens
Front. Microbiol. 13 , art. 1046260 10.3389/fmicb.2022.1046260
Dzofou Ngoumelah, D., Kuchenbuch, A., Harnisch, F., Kretzschmar, J. (2023):
Combining Geobacter spp. dominated biofilms and anaerobic digestion effluents─The effect of effluent composition and electrode potential on biofilm activity and stability
Environ. Sci. Technol. 57 (6), 2584 - 2594 10.1021/acs.est.2c07574
Eisenhauer, N., Angst, G., Asato, A.E.B., Beugnon, R., Bönisch, E., Cesarz, S., Dietrich, P., Jurburg, S.D., Madaj, A.-M., Reuben, R.C., Ristok, C., Sünnemann, M., Yi, H., Guerra, C.A., Hines, J. (2023):
The heterogeneity–diversity–system performance nexus
Natl. Sci. Rev. 10 (7), nwad109 10.1093/nsr/nwad109
Escher, B.I., Altenburger, R., Blüher, M., Colbourne, J.K., Ebinghaus, R., Fantke, P., Hein, M., Köck, W., Kümmerer, K., Leipold, S., Li, X., Scheringer, M., Scholz, S., Schloter, M., Schweizer, P.-J., Tal, T., Tetko, I., Traidl-Hoffmann, C., Wick, L.Y., Fenner, K. (2023):
Modernizing persistence–bioaccumulation–toxicity (PBT) assessment with high throughput animal-free methods
Arch. Toxicol. 97 (5), 1267 - 1283 10.1007/s00204-023-03485-5
Glidden, C.K., Karakoç, C., Duan, C., Jiang, Y., Beechler, B., Jabbar, A., Jolles, A.E. (2023):
Distinct life history strategies underpin clear patterns of succession in microparasite communities infecting a wild mammalian host
Mol. Ecol. 32 (13), 3733 - 3746 10.1111/mec.16949
Grosch Schroeder, B., İstanbullu, H.B., Schmidt, M., Logroño, W., Harms, H., Nikolausz, M. (2023):
Effect of alkaline and mechanical pretreatment of wheat straw on methanogenic enrichment cultures from Pachnoda marginata larva gut
Fermentation 9 (1), art. 60 10.3390/fermentation9010060
Gu, L., Xiao, X., Lee, S.Y., Lai, B., Solem, C. (2023):
Superior anodic electro-fermentation by enhancing capacity for extracellular electron transfer
Bioresour. Technol. 389 , art. 129813 10.1016/j.biortech.2023.129813
Guo, Y., Rosa, L.F.M., Shan, Y., Harnisch, F., Müller, S. (2023):
Labor division of electroactive and carbon degrading microorganisms in bioelectrochemical laminar flow reactors
J. Environ. Chem. Eng. 11 (5), art. 111074 10.1016/j.jece.2023.111074
Haenelt, S., Wang, G., Kasmanas, J.C., Musat, F., Richnow, H.H., Nunes da Rocha, U., Müller, J.A., Musat, N. (2023):
The fate of sulfonamide resistance genes and anthropogenic pollution marker intI1 after discharge of wastewater into a pristine river stream
Front. Microbiol. 14 , art. 1058350 10.3389/fmicb.2023.1058350
Haenelt, S., Wang, G., Kasmanas, J.C., Musat, F., Richnow, H.H., Nunes da Rocha, U., Müller, J.A., Musat, N. (2023):
Corrigendum: The fate of sulfonamide resistance genes and anthropogenic pollution marker intI1 after discharge of wastewater into a pristine river stream (vol 14, 1058350, 2023)
Front. Microbiol. 14 , art. 1208555 10.3389/fmicb.2023.1208555
Hoffstadt, K., Cheenakula, D., Nikolausz, M., Krafft, S., Harms, H., Kuperjans, I. (2023):
Design and construction of a new reactor for flexible biomethanation of hydrogen
Fermentation 9 (8), art. 774 10.3390/fermentation9080774
Höppner, J., Krohn, S., van den Munckhof, E.H.A., Kallies, R., Herber, A., Zeller, K., Tünnemann, J., Matz-Soja, M., Chatzinotas, A., Böhm, S., Hoffmeister, A., Berg, T., Engelmann, C. (2023):
Changes of the bacterial composition in duodenal fluid from patients with liver cirrhosis and molecular bacterascites
Sci. Rep. 13 , art. 23001 10.1038/s41598-023-49505-3
Izadi, P., Kas, A., Haus, P., Harnisch, F. (2023):
On the stability of electrochemical CO₂ reduction reaction to formate at indium electrodes at biocompatible conditions
Electrochim. Acta 462 , art. 142733 10.1016/j.electacta.2023.142733
Jurburg, S.D., Hom, E.F.Y., Chatzinotas, A. (2023):
Beyond pathogenesis: Detecting the full spectrum of ecological interactions in the virosphere
PLoS Biol. 21 (5), e3002109 10.1371/journal.pbio.3002109
Kaesler, J.M., Lechtenfeld, O., Drabesch, S., Muehe, E.M. (2023):
Liquid chromatorgraphy Fourier transform ion cyclotron resonance mass spectrometry (LC-FT-ICR MS) data of dissolved organic matter (DOM) from soil solution samples of climate and cadmium manipulated soils
Data Investigation Portal UFZ 10.48758/ufz.14199
Kallies, R., Hu, D., Abdulkadir, N., Schloter, M., Nunes da Rocha, U. (2023):
Identification of huge phages from wastewater metagenomes
Viruses 15 (12), art. 2330 10.3390/v15122330
Kang, B.R., Kim, J.J., Hong, J.-K., Schlosser, D., Lee, T.K. (2023):
Continuous operation of fungal wheel reactor based on solid-state fermentation for the removal of pharmaceutical and personal care products
J. Environ. Manage. 331 , art. 117316 10.1016/j.jenvman.2023.117316
Kas, A., Izadi, P., Harnisch, F. (2023):
Cover profile: High salt electrolyte solutions challenge the electrochemical CO₂ reduction reaction to formate at indium and tin cathodes
ChemElectroChem 10 (23), e202300655 10.1002/celc.202300655
Kas, A., Izadi, P., Harnisch, F. (2023):
Front cover: High salt electrolyte solutions challenge the electrochemical CO₂ reduction reaction to formate at indium and tin cathodes (ChemElectroChem 23/2023)
ChemElectroChem 10 (23), e202300656 10.1002/celc.202300656
Kas, A., Izadi, P., Harnisch, F. (2023):
High salt electrolyte solutions challenge the electrochemical CO₂ reduction reaction to formate at indium and tin cathodes
ChemElectroChem 10 (23), e202300311 10.1002/celc.202300311
Kasmanas, J.C. (2023):
MAGs, ARGs, and VFs from the gSpreadComp work
Data Investigation Portal UFZ 10.48758/ufz.14212
Kenkel, A., Karande, R., Bühler, K. (2023):
Evaluating scaling of capillary photo‐biofilm reactors for high cell density cultivation of mixed trophies artificial microbial consortia
Eng. Life Sci. 23 (9), e2300014 10.1002/elsc.202300014
Khan, N., Muge, E., Mulaa, F.J., Wamalwa, B., von Bergen, M., Jehmlich, N., Wick, L.Y. (2023):
Mycelial nutrient transfer promotes bacterial co-metabolic organochlorine pesticide degradation in nutrient-deprived environments
ISME J. 17 (4), 570 - 578 10.1038/s41396-023-01371-7
Knecht, C.A., Hinkel, M., Mäusezahl, I., Kaster, A.-K., Nivala, J., Müller, J.A. (2023):
Identification of antibiotic resistance gene hosts in treatment wetlands using a single-cell based high-throughput approach
Water 15 (13), art. 2432 10.3390/w15132432
Korth, B., Pereira, J., Sleutels, T., Harnisch, F., ter Heijne, A. (2023):
Comparing theoretical and practical biomass yields calls for revisiting thermodynamic growth models for electroactive microorganisms
Water Res. 242 , art. 120279 10.1016/j.watres.2023.120279
Lai, B., Krömer, J., Aulenta, F., Wu, H., Nikel, P.I. (2023):
Exploiting synergies between microbial electrochemical technologies and synthetic biology
Microb. Biotechnol. 16 (3), 485 - 488 10.1111/1751-7915.14208
Le, A.V., Větrovský, T., Barucic, D., Saraiva, J.P., Dobbler, P.T., Kohout, P., Pospíšek, M., Nunes da Rocha, U., Kléma, J., Baldrian, P. (2023):
Improved recovery and annotation of genes in metagenomes through the prediction of fungal introns
Mol. Ecol. Resour. 23 (8), 1800 - 1811 10.1111/1755-0998.13852
Li, S., Müller, S. (2023):
Ecological forces dictate microbial community assembly processes in bioreactor systems
Curr. Opin. Biotechnol. 81 , art. 102917 10.1016/j.copbio.2023.102917
Liu, B., Sträuber, H., Centler, F., Harms, H., Nunes da Rocha, U., Kleinsteuber, S. (2023):
Functional redundancy secures resilience of chain elongation communities upon pH shifts in closed bioreactor ecosystems
Environ. Sci. Technol. 57 (46), 18350 - 18361 10.1021/acs.est.2c09573
Logroño, W., Kleinsteuber, S., Kretzschmar, J., Harnisch, F., De Vrieze, J., Nikolausz, M. (2023):
The microbiology of Power-to-X applications
FEMS Microbiol. Rev. 47 (2), fuad013 10.1093/femsre/fuad013
López-Gálvez, J., Schiessl, K., Besmer, M.D., Bruckmann, C., Harms, H., Müller, S. (2023):
Development of an automated online flow cytometry method to quantify cell density and fingerprint bacterial communities
Cells 12 (12), art. 1559 10.3390/cells12121559
Lorca, G.L., Kleinsteuber, S. (2023):
Women in microbial physiology and metabolism: 2022. Editorial
Front. Microbiol. 14 , art. 1268568 10.3389/fmicb.2023.1268568
Magnúsdóttir, S., Saraiva, J.P., Bartholomäus, A., Soheili, M., Brizola Toscan, R., Zhang, J., Nunes da Rocha, U. (2023):
Metagenome-assembled genomes indicate that antimicrobial resistance genes are highly prevalent among urban bacteria and multidrug and glycopeptide resistances are ubiquitous in most taxa
Front. Microbiol. 14 , art. 1037845 10.3389/fmicb.2023.1037845
Opel, F., Itzenhäuser, M.A., Wehner, I., Lupacchini, S., Lauterbach, L., Lenz, O., Klähn, S. (2023):
Towards a synthetic hydrogen sensor in cyanobacteria: Functional production of an oxygen-tolerant regulatory hydrogenase in Synechocystis sp. PCC 6803
Front. Microbiol. 14 , art. 1122078 10.3389/fmicb.2023.1122078
Pan, M., Wang, Y., Krömer, J.O., Zhu, X., Lin, M.K.T.H., Angelidaki, I. (2023):
A coculture of photoautotrophs and hydrolytic heterotrophs enables efficient upcycling of starch from wastewater toward biomass-derived products: Synergistic interactions impacting metabolism of the consortium
Environ. Sci. Technol. 57 (41), 15523 - 15532 10.1021/acs.est.3c05321
Reuben, R.C., Beugnon, R., Jurburg, S.D. (2023):
COVID-19 alters human microbiomes: a meta-analysis
Front. Cell. Infect. Microbiol. 13 , art. 1211348 10.3389/fcimb.2023.1211348
Reuben, R.C., Langer, D., Eisenhauer, N., Jurburg, S.D. (2023):
Universal drivers of cheese microbiomes
iScience 26 (1), art. 105744 10.1016/j.isci.2022.105744
Rosado, P.M., Cardoso, P.M., Rosado, J.G., Schultz, J., Nunes da Rocha, U., Keller-Costa, T., Peixoto, R.S. (2023):
Exploring the potential molecular mechanisms of interactions between a probiotic consortium and its coral host
mSystems 8 (1), e00921-22 10.1128/msystems.00921-22
Saeidi, N., Harnisch, F., Presser, V., Kopinke, F.-D., Georgi, A. (2023):
Electrosorption of organic compounds: State of the art, challenges, performance, and perspectives
Chem. Eng. J. 471 , art. 144354 10.1016/j.cej.2023.144354
Saraiva, J.P., Bartholomäus, A., Brizola Toscan, R., Baldrian, P., Nunes da Rocha, U. (2023):
Recovery of 197 eukaryotic bins reveals major challenges for eukaryote genome reconstruction from terrestrial metagenomes
Mol. Ecol. Resour. 23 (5), 1066 - 1076 10.1111/1755-0998.13776
Schneider, H., Lai, B., Krömer, J. (2023):
Interference of electron transfer chain inhibitors in bioelectrochemical systems
Electrochem. Commun. 152 , art. 107527 10.1016/j.elecom.2023.107527
Schwab, L., Prinsen, L., Nowack, G., Popp, D., Noll, M., Vogt, C., Wagner, M. (2023):
Sulfate reduction and homoacetogenesis at various hypersaline conditions: Implications for H₂ underground gas storage
Front. Energy Res. 11 , art. 1125619 10.3389/fenrg.2023.1125619
Silva, S.G., Homsi, M.N., Keller-Costa, T., Nunes da Rocha, U., Costa, R. (2023):
Natural product biosynthetic potential reflects macroevolutionary diversification within a widely distributed bacterial taxon
mSystems 8 (6), e00643-23 10.1128/msystems.00643-23
Stöckl, M., Lange, T., Izadi, P., Bolat, S., Teetz, N., Harnisch, F., Holtmann, D. (2023):
Application of gas diffusion electrodes in bioeconomy: An update
Biotechnol. Bioeng. 120 (6), 1465 - 1477 10.1002/bit.28383
Straessner, R., Nikolausz, M., Silve, A., Nazarova, N., Wuestner, R., Papachristou, I., Akaberi, S., Leber, K., Mueller, G., Frey, W. (2023):
Holistic exploitation of pulsed electric field (PEF)-treated and lipid extracted microalgae Auxenochlorella protothecoides, utilizing anaerobic digestion (AD)
Algal Res. 69 , art. 102950 10.1016/j.algal.2022.102950
Toepel, J., Karande, R., Bühler, B., Bühler, K., Schmid, A. (2023):
Photosynthesis driven continuous hydrogen production by diazotrophic cyanobacteria in high cell density capillary photobiofilm reactors
Bioresour. Technol. 373 , art. 128703 10.1016/j.biortech.2023.128703
Toepel, J., Karande, R., Klähn, S., Bühler, B. (2023):
Cyanobacteria as whole-cell factories: current status and future prospectives
Curr. Opin. Biotechnol. 80 , art. 102892 10.1016/j.copbio.2023.102892
Tüllinghoff, A., Djaya-Mbissam, H., Toepel, J., Bühler, B. (2023):
Light‐driven redox biocatalysis on gram‐scale in Synechocystis sp. PCC 6803 via an in vivo cascade
Plant Biotechnol. J. 21 (10), 2074 - 2083 10.1111/pbi.14113
Veen, J., Jang, H., Raubenheimer, D., van Pinxteren, B.O.C.M., Kandza, V., Meirmans, P.G., van Dam, N.M., Dunker, S., Hoffmann, P., Worrich, A., Janmaat, K.R.L. (2023):
Development of embodied capital: diet composition, foraging skills, and botanical knowledge of forager children in the Congo Basin
Front. Ecol. Evol. 11 , art. 935987 10.3389/fevo.2023.935987
Wang, M., Ji, Q., Lai, B., Liu, Y., Mei, K. (2023):
Structure-function and engineering of plant UDP-glycosyltransferase
Comp. Struct. Biotechnol. J. 21 , 5358 - 5371 10.1016/j.csbj.2023.10.046
Werner, K.A., Feyen, L., Hübner, T., Brüggemann, N., Prost, K., Grohmann, E. (2023):
Fate of horizontal-gene-transfer markers and beta-lactamase genes during thermophilic composting of human excreta
Microorganisms 11 (2), art. 308 10.3390/microorganisms11020308
Wirsching, J., Chavez Rodriguez, L., Ditterich, F., Pagel, H., He, R., Uksa, M., Zwiener, C., Kandeler, E., Poll, C. (2023):
Temperature and soil moisture change microbial allocation of pesticide-derived carbon
Eur. J. Soil Sci. 74 (5), e13417 10.1111/ejss.13417
Wolthuis, J.C., Magnúsdóttir, S., Stigter, E., Tang, Y.F., Jans, J., Gilbert, M., van der Hee, B., Langhout, P., Gerrits, W., Kies, A., de Ridder, J., van Mil, S. (2023):
Multi-country metabolic signature discovery for chicken health classification
Metabolomics 19 (2), art. 9 10.1007/s11306-023-01973-4
Yang, S., Di Lodovico, E. (2023):
Enhancing Insights: Exploring the Information Content of Calorespirometric Measurements in Dynamic Soil Processes (Version 1.0)
Data Investigation Portal UFZ 10.48758/UFZ.14030

to index

2022 (87)

Abdollahi, M., Al Sbei, S., Rosenbaum, M.A., Harnisch, F. (2022):
The oxygen dilemma: The challenge of the anode reaction for microbial electrosynthesis from CO₂
Front. Microbiol. 13 , art. 947550 10.3389/fmicb.2022.947550
Abramov, S.M., He, J., Wimmer, D., Muehe, E.M., Helle, T., Thorwarth, H., Kappler, A. (2022):
Thiourea leaching of gold from processed municipal solid waste incineration residues
J. Mater. Cycles Waste Manag. 24 (6), 2243 - 2254 10.1007/s10163-022-01476-9
Bachmann, M., Wensch-Dorendorf, M., Kuhnitzsch, C., Kleinsteuber, S., Popp, D., Thierbach, A., Martens, S.D., Steinhöfel, O., Zeyner, A. (2022):
Changes in composition and diversity of epiphytic microorganisms on field pea seeds, partial crop peas, and whole crop peas during maturation and ensiling with or without lactic acid bacteria inoculant
Microbiol. Spectr. 10 (4), e00953-22 10.1128/spectrum.00953-22
Baleeiro, F.C.F., Kleinsteuber, S., Sträuber, H. (2022):
Recirculation of H₂, CO₂, and ethylene improves carbon fixation and carboxylate yields in anaerobic fermentation
ACS Sustain. Chem. Eng. 10 (13), 4073 - 4081 10.1021/acssuschemeng.1c05133
Bertê, R., Teixeira, G.M., de Oliveira, J.P., Nicoletto, M.L.A., da Silva, D.V., de Godoy, G.G., Sipoli Sanches, D., de Resende, J.T.V., de Padua Pereira, U., Nunes da Rocha, U., de Oliveira, A.G. (2022):
Genome mining reveals high biosynthetic potential of biocontrol agent Bacillus velezensis B.BV10
Genes 13 (11), art. 1984 10.3390/genes13111984
Blombach, B., Grünberger, A., Centler, F., Wierckx, N., Schmid, J. (2022):
Exploiting unconventional prokaryotic hosts for industrial biotechnology
Trends Biotechnol. 40 (4), 385 - 397 10.1016/j.tibtech.2021.08.003
Bonidia, R.P., Avila Santos, A.P., Almeida, B.L.S., Stadler, P.F., Nunes da Rocha, U., Sipoli Sanches, D., de Carvalho, A.C.P.L.F. (2022):
Information theory for biological sequence classification: A novel feature extraction technique based on Tsallis entropy
Entropy 24 (10), art. 1398 10.3390/e24101398
Bonidia, R.P., Avila Santos, A.P., de Almeida, B.L.S., Stadler, P.F., Nunes da Rocha, U., Sanches, D.S., de Carvalho, A.C.P.L.F. (2022):
BioAutoML: automated feature engineering and metalearning to predict noncoding RNAs in bacteria
Brief. Bioinform. 23 (4), bbac218 10.1093/bib/bbac218
Bozan, M., Popp, D., Kallies, R., Nunes da Rocha, U., Klähn, S., Bühler, K. (2022):
Whole-genome sequence of the filamentous diazotrophic cyanobacterium Tolypothrix sp. PCC 7712 and its comparison with non-diazotrophic Tolypothrix sp. PCC 7601
Front. Microbiol. 13 , art. 1042437 10.3389/fmicb.2022.1042437
Braune, M., Yuan, B., Sträuber, H., Mcdowall, S.C., Nitzsche, R., Gröngröft, A. (2022):
Corrigendum: A downstream processing cascade for separation of caproic and caprylic acid from maize silage-based fermentation broth
Front. Bioeng. Biotechnol. 10 , art. 1049451 10.3389/fbioe.2022.1049451
Bruckmann, C., Müller, S., Höner zu Siederdissen, C. (2022):
Automatic, fast, hierarchical, and non-overlapping gating of flow cytometric data with flowEMMi v2
Comp. Struct. Biotechnol. J. 20 , 6473 - 6489 10.1016/j.csbj.2022.11.033
Bruckmann, C., Stadler, P.F., Hellmuth, M. (2022):
From modular decomposition trees to rooted median graphs
Discrete Appl. Math. 310 , 1 - 9 10.1016/j.dam.2021.12.017
Cárdenas-Rey, I., d. J. Bello Gonzalez, T., van der Goot, J., Ceccarelli, D., Bouwhuis, G., Schillemans, D., Jurburg, S.D., Veldman, K.T., de Visser, J.A.G.M., Brouwer, M.S.M. (2022):
Succession in the caecal microbiota of developing broilers colonised by extended-spectrum β-lactamase-producing Escherichia coli
Animal Microbiome 4 , art. 51 10.1186/s42523-022-00199-4
Chen, S.-C., Ji, J., Popp, D., Jaekel, U., Richnow, H.-H., Sievert, S.M., Musat, F. (2022):
Genome and proteome analyses show the gaseous alkane degrader Desulfosarcina sp. strain BuS5 as an extreme metabolic specialist
Environ. Microbiol. 24 (4), 1964 - 1976 10.1111/1462-2920.15956
Dai, S., Korth, B., Schwab, L., Aulenta, F., Vogt, C., Harnisch, F. (2022):
Deciphering the fate of sulfate in one- and two-chamber bioelectrochemical systems
Electrochim. Acta 408 , art. 139942 10.1016/j.electacta.2022.139942
Duong, H.L., Paufler, S., Harms, H., Maskow, T., Schlosser, D. (2022):
Applicability and information value of biocalorimetry for the monitoring of fungal solid-state fermentation of lignocellulosic agricultural by-products
New Biotech. 66 , 97 - 106 10.1016/j.nbt.2021.11.001
Duong, H.L., Paufler, S., Harms, H., Schlosser, D., Maskow, T. (2022):
Fungal lignocellulose utilization strategies from a bioenergetic perspective: Quantification of related functional traits using biocalorimetry
Microorganisms 10 (8), art. 1675 10.3390/microorganisms10081675
Eziuzor, S.C., Borim Corrêa, F., Peng, S., Schultz, J., Kleinsteuber, S., Nunes da Rocha, U., Adrian, L., Vogt, C. (2022):
Structure and functional capacity of a benzene‐mineralizing, nitrate‐reducing microbial community
J. Appl. Microbiol. 132 (4), 2795 - 2811 10.1111/jam.15443
Gharasoo, M., Elsner, M., van Cappellen, P., Thullner, M. (2022):
Pore-scale heterogeneities improve the degradation of a self-inhibiting substrate: Insights from reactive transport modeling
Environ. Sci. Technol. 56 (18), 13008 - 13018 10.1021/acs.est.2c01433
Golparvar, A. (2022):
amirgolp/P3D-BRNS: v0.1.0-beta
Zenodo 10.5281/zenodo.6301317
Grosch Schroeder, B., Logroño, W., Nunes da Rocha, U., Harms, H., Nikolausz, M. (2022):
Enrichment of anaerobic microbial communities from midgut and hindgut of sun beetle larvae (Pachnoda marginata) on wheat straw: effect of inoculum preparation
Microorganisms 10 (4), art. 761 10.3390/microorganisms10040761
Hallama, M., Pekrun, C., Mayer-Gruner, P., Uksa, M., Abdullaeva, Y., Pilz, S., Schloter, M., Lambers, H., Kandeler, E. (2022):
The role of microbes in the increase of organic phosphorus availability in the rhizosheath of cover crops
Plant Soil 476 (1-2), 353 - 373 10.1007/s11104-022-05340-5
Hoffstadt, K., Krafft, S., Nikolausz, M., Kuperjans, I. (2022):
Power-to-methane – Design and optimization of two new bubble column reactors
Chem. Ing. Tech. 94 (9), 1323 - 1323 10.1002/cite.202255250
Houwaart, T., Belhaj, S., Tawalbeh, E., Nagels, D., Fröhlich, Y., Finzer, P., Ciruela, P., Nunes da Rocha, U., Rosenstiel, P., et al. (2022):
Integrated genomic surveillance enables tracing of person-to-person SARS-CoV-2 transmission chains during community transmission and reveals extensive onward transmission of travel-imported infections, Germany, June to July 2021
Eurosurveillance 27 (43), art. 2101089 10.2807/1560-7917.ES.2022.27.43.2101089
Izadi, P., Harnisch, F. (2022):
Microbial | electrochemical CO₂ reduction: To integrate or not to integrate?
Joule 6 (5), 935 - 940 10.1016/j.joule.2022.04.005
Izadi, P., Schröder, U. (2022):
What is the role of individual species within bidirectional electroactive microbial biofilms: A case study on Desulfarculus baarsii and Desulfurivibrio alkaliphilus
ChemElectroChem 9 (2), e202101116 10.1002/celc.202101116
Jadeja, N.B., Worrich, A. (2022):
From gut to mud: dissemination of antimicrobial resistance between animal and agricultural niches
Environ. Microbiol. 24 (8), 3290 - 3306 10.1111/1462-2920.15927
Jensen Pedersen, K., Haange, S.-B., Žížalová, K., Viehof, A., Clavel, T., Leniček, M., Engelmann, B., Wick, L.Y., Schaap, F.G., Jehmlich, N., Rolle-Kampczyk, U., von Bergen, M. (2022):
Eggerthella lenta DSM 2243 alleviates bile acid stress response in Clostridium ramosum and Anaerostipes caccae by transformation of bile acids
Microorganisms 10 (10), art. 2025 10.3390/microorganisms10102025
Jurburg, S.D., Buscot, F., Chatzinotas, A., Chaudhari, N.M., Clark, A.T., Garbowski, M., Grenié, M., Hom, E.F.Y., Karakoç, C., Marr, S., Neumann, S., Tarkka, M., van Dam, N.M., Weinhold, A., Heintz-Buschart, A. (2022):
The community ecology perspective of omics data
Microbiome 10 , art. 225 10.1186/s40168-022-01423-8
Jurburg, S.D., Eisenhauer, N., Buscot, F., Chatzinotas, A., Chaudhari, N.M., Heintz-Buschart, A., Kallies, R., Küsel, K., Litchman, E., Macdonald, C.A., Müller, S., Reuben, R.C., Nunes da Rocha, U., Panagiotou, G., Rillig, M.C., Singh, B.K. (2022):
Potential of microbiome-based solutions for agrifood systems
Nat. Food 3 (8), 557 - 560 10.1038/s43016-022-00576-x
Kabiru Nata’ala, M., Avila Santos, A.P., Kasmanas, J.C., Bartholomäus, A., Saraiva, J.P., Silva, S.G., Keller-Costa, T., Costa, R., Gomes, N.C.M., de Carvalho, A.C.P.L.F., Stadler, P.F., Sipoli Sanches, D., Nunes da Rocha, U. (2022):
MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes
Environ. Microbiome 17 , art. 57 10.1186/s40793-022-00449-7
Kamjunke, N., Beckers, L.-M., Herzsprung, P., von Tümpling, W., Lechtenfeld, O., Tittel, J., Risse-Buhl, U., Rode, M., Wachholz, A., Kallies, R., Schulze, T., Krauss, M., Brack, W., Comero, S., Gawlik, B.M., Skejo, H., Tavazzi, S., Mariani, G., Borchardt, D., Weitere, M. (2022):
Lagrangian profiles of riverine autotrophy, organic matter transformation, and micropollutants at extreme drought
Sci. Total Environ. 828 , art. 154243 10.1016/j.scitotenv.2022.154243
Karagulyan, M., Goebel, M.-O., Diehl, D., Abu Quba, A.A., Kästner, M., Bachmann, J., Wick, L.Y., Schaumann, G.E., Miltner, A. (2022):
Water stress-driven changes in bacterial cell surface properties
Appl. Environ. Microb. 88 (21), e00732-22 10.1128/aem.00732-22
Keller-Costa, T., Kozma, L., Silva, S.G., Toscan, R., Gonçalves, J., Lago-Lestón, A., Kyrpides, N.C., Nunes da Rocha, U., Costa, R. (2022):
Metagenomics-resolved genomics provides novel insights into chitin turnover, metabolic specialization, and niche partitioning in the octocoral microbiome
Microbiome 10 , art. 151 10.1186/s40168-022-01343-7
Khan, A.M., Gharasoo, M., Wick, L.Y., Thullner, M. (2022):
Phase-specific stable isotope fractionation effects during combined gas-liquid phase exchange and biodegradation
Environ. Pollut. 309 , art. 119737 10.1016/j.envpol.2022.119737
Khan, N., Brizola Toscan, R., Lunayo, A., Wamalwa, B., Muge, E., Mulaa, F.J., Kallies, R., Harms, H., Wick, L.Y., Nunes da Rocha, U. (2022):
Draft genome sequences of two Sphingobium species associated with hexachlorocyclohexane (HCH) degradation isolated from an HCH-contaminated soil
Microbiol. Resour. Ann. 11 (3), e00886-21 10.1128/mra.00886-21
Khurana, S., Heße, F., Hildebrandt, A., Thullner, M. (2022):
Predicting the impact of spatial heterogeneity on microbially mediated nutrient cycling in the subsurface
Biogeosciences 19 (3), 665 - 688 10.5194/bg-19-665-2022
Khurana, S., Heße, F., Hildebrandt, A., Thullner, M. (2022):
Should we worry about surficial dynamics when assessing nutrient cycling in the groundwater?
Front. Water 4 , art. 780297 10.3389/frwa.2022.780297
Knecht, C.A., Krüger, M., Kellmann, S., Mäusezahl, I., Möder, M., Adelowo, O.O., Vollmers, J., Kaster, A.-K., Nivala, J., Müller, J.A. (2022):
Cellular stress affects the fate of microbial resistance to folate inhibitors in treatment wetlands
Sci. Total Environ. 845 , art. 157318 10.1016/j.scitotenv.2022.157318
Koók, L., Rosa, L.F.M., Harnisch, F., Žitka, J., Otmar, M., Nemestóthy, N., Bakonyi, P., Kretzschmar, J. (2022):
Functional stability of novel homogeneous and heterogeneous cation exchange membranes for abiotic and microbial electrochemical technologies
J. Membr. Sci. 658 , art. 120705 10.1016/j.memsci.2022.120705
Korth, B., Pous, N., Hönig, R., Haus, P., Borim Corrêa, F., Nunes da Rocha, U., Puig, S., Harnisch, F. (2022):
Electrochemical and microbial dissection of electrified biotrickling filters
Front. Microbiol. 13 , art. 869474 10.3389/fmicb.2022.869474
Koskimäki, J.J., Pohjanen, J., Kvist, J., Fester, T., Härtig, C., Podolich, O., Fluch, S., Edesi, J., Häggman, H., Pirttilä, A.M. (2022):
The meristem-associated endosymbiont Methylorubrum extorquens DSM13060 reprograms development and stress responses of pine seedlings
Tree Physiol. 42 (2), 391 - 410 10.1093/treephys/tpab102
Krause, J.L., Engelmann, B., Nunes da Rocha, U., Pierzchalski, A., Chang, H.D., Zenclussen, A.C., von Bergen, M., Rolle-Kampczyk, U., Herberth, G. (2022):
MAIT cell activation is reduced by direct and microbiota-mediated exposure to bisphenols
Environ. Int. 158 , art. 106985 10.1016/j.envint.2021.106985
Kuchenbuch, A., Frank, R., Vazquez Ramos, J., Jahnke, H.-G., Harnisch, F. (2022):
Electrochemical microwell plate to study electroactive microorganisms in parallel and real-time
Front. Bioeng. Biotechnol. 10 , art. 821734 10.3389/fbioe.2021.821734
Kuhn, T., Buffi, M., Bindschedler, S., Chain, P.S., Gonzalez, D., Stanley, C.E., Wick, L.Y., Junier, P., Li Richter, X.-Y. (2022):
Design and construction of 3D printed devices to investigate active and passive bacterial dispersal on hydrated surfaces
BMC Biol. 20 , art. 203 10.1186/s12915-022-01406-z
Le, A.V., Muehe, E.M., Drabesch, S., Pacheco, J.L., Bayer, T., Joshi, P., Kappler, A., Mansor, M. (2022):
Environmental risk of arsenic mobilization from disposed sand filter materials
Environ. Sci. Technol. 56 (23), 16822 - 16830 10.1021/acs.est.2c04915
Li, S., Abdulkadir, N., Schattenberg, F., Nunes da Rocha, U., Grimm, V., Müller, S., Liu, Z. (2022):
Stabilizing microbial communities by looped mass transfer
Proc. Natl. Acad. Sci. U.S.A. 119 (17), e2117814119 10.1073/pnas.2117814119
Li, S., Liu, Z., Süring, C., Müller, S., Zeng, P. (2022):
The impact of the antibiotic fosfomycin on wastewater communities measured by flow cytometry
Front. Microbiol. 12 , art. 737831 10.3389/fmicb.2021.737831
Liu, B., Sträuber, H., Saraiva, J., Harms, H., Silva, S.G., Kasmanas, J.C., Kleinsteuber, S., Nunes da Rocha, U. (2022):
Machine learning-assisted identification of bioindicators predicts medium-chain carboxylate production performance of an anaerobic mixed culture
Microbiome 10 , art. 48 10.1186/s40168-021-01219-2
Lo, H.-Y., Martínez-Lavanchy, P., Goris, T., Heider, J., Boll, M., Kaster, A.-K., Müller, J.A. (2022):
IncP-type plasmids carrying genes for antibiotic resistance or for aromatic compound degradation are prevalent in sequenced Aromatoleum and Thauera strains
Environ. Microbiol. 24 (12), 6411 - 6425 10.1111/1462-2920.16262
Logroño, W., Kluge, P., Kleinsteuber, S., Harms, H., Nikolausz, M. (2022):
Effect of inoculum microbial diversity in ex situ biomethanation of hydrogen
Bioengineering-Basel 9 (11), art. 678 10.3390/bioengineering9110678
Logroño, W., Nikolausz, M., Harms, H., Kleinsteuber, S. (2022):
Physiological effects of 2-bromoethanesulfonate on hydrogenotrophic pure and mixed cultures
Microorganisms 10 (2), art. 355 10.3390/microorganisms10020355
López-Mondéjar, R., Tláskal, V., Nunes da Rocha, U., Baldrian, P. (2022):
Global distribution of carbohydrate utilization potential in the prokaryotic tree of life
mSystems 7 (6), e00829-22 10.1128/msystems.00829-22
Mahecha, M.D., Bastos, A., Bohn, F.J., Eisenhauer, N., Feilhauer, H., Hartmann, H., Hickler, T., Kalesse-Los, H., Migliavacca, M., Otto, F.E.L., Peng, J., Quaas, J., Tegen, I., Weigelt, A., Wendisch, M., Wirth, C. (2022):
Biodiversity loss and climate extremes — study the feedbacks
Nature 612 (7938), 30 - 32 10.1038/d41586-022-04152-y
Menezes Bergo, N., Torres-Ballesteros, A., Negrão Signori, C., Benites, M., Jovane, L., Murton, B.J., Nunes da Rocha, U., Pellizari, V.H. (2022):
Spatial patterns of microbial diversity in Fe-Mn deposits and associated sediments in the Atlantic and Pacific oceans
Sci. Total Environ. 837 , art. 155792 10.1016/j.scitotenv.2022.155792
Neubert, K., Hell, M., Chávez Morejón, M., Harnisch, F. (2022):
Hetero-coupling of bio-based medium chain carboxylic acids by Kolbe electrolysis enables high fuel yield and efficiency
ChemSusChem 15 (21), e202201426 10.1002/cssc.202201426
Oliveira Monteiro, L.M., Saraiva, J.P., Brizola Toscan, R., Stadler, P.F., Silva-Rocha, R., Nunes da Rocha, U. (2022):
PredicTF: prediction of bacterial transcription factors in complex microbial communities using deep learning
Environ. Microbiome 17 , art. 7 10.1186/s40793-021-00394-x
Pozdnyakova, N., Dubrovskaya, E., Schlosser, D., Kuznetsova, S., Sigida, E., Grinev, V., Golubev, S., Kryuchkova, E., Varese, G.C., Turkovskaya, O. (2022):
Widespread ability of ligninolytic fungi to degrade hazardous organic pollutants as the basis for the self-purification ability of natural ecosystems and for mycoremediation technologies
Appl. Sci. 12 (4), art. 2164 10.3390/app12042164
Puiggené, Ò., Cárdenas Espinosa, M.J., Schlosser, D., Thies, S., Jehmlich, N., Kappelmeyer, U., Schreiber, S., Wibberg, D., Kalinowski, J., Harms, H., Heipieper, H.J., Eberlein, C. (2022):
Extracellular degradation of a polyurethane oligomer involving outer membrane vesicles and further insights on the degradation of 2,4-diaminotoluene in Pseudomonas capeferrum TDA1
Sci. Rep. 12 , art. 2666 10.1038/s41598-022-06558-0
Qin, W., Stärk, H.-J., Müller, S., Reemtsma, T. (2022):
Exploring the extent of phosphorus and heavy metal uptake by single cells of Saccharomyces cerevisiae and their effects on intrinsic elements by SC-ICP-TOF-MS
Front. Microbiol. 13 , art. 870931 10.3389/fmicb.2022.870931
Robazza, A., Welter, C., Kubisch, C., Baleeiro, F.C.F., Ochsenreither, K., Neumann, A. (2022):
Co-fermenting pyrolysis aqueous condensate and pyrolysis syngas with anaerobic microbial communities enables L-malate production in a secondary fermentative stage
Fermentation 8 (10), art. 512 10.3390/fermentation8100512
Scarabotti, F., Bühler, K., Schmidt, M., Harnisch, F. (2022):
Thickness and roughness of transparent gold-palladium anodes have no impact on growth kinetics and yield coefficients of early-stage Geobacter sulfurreducens biofilms
Bioelectrochemistry 144 , art. 108043 10.1016/j.bioelechem.2021.108043
Scarabotti, F., Kuchenbuch, A., Kallies, R., Bühler, K., Harnisch, F. (2022):
Towards real-time determination of yield coefficients of early-stage electroactive biofilms using optical microscopy
Front. Energy Res. 10 , art. 920266 10.3389/fenrg.2022.920266
Scholz, S., Brack, W., Escher, B.I., Hackermüller, J., Liess, M., von Bergen, M., Wick, L.Y., Zenclussen, A.C., Altenburger, R. (2022):
The EU chemicals strategy for sustainability: an opportunity to develop new approaches for hazard and risk assessment
Arch. Toxicol. 96 (8), 2381 - 2386 10.1007/s00204-022-03313-2
Schultz, J., Argentino, I.C.V., Kallies, R., Nunes da Rocha, U., Rosado, A.S. (2022):
Polyphasic analysis reveals potential petroleum hydrocarbon degradation and biosurfactant production by rare biosphere thermophilic bacteria from Deception Island, an active Antarctic volcano
Front. Microbiol. 13 , art. 885557 10.3389/fmicb.2022.885557
Schwab, L., Popp, D., Nowack, G., Bombach, P., Vogt, C., Richnow, H.H. (2022):
Structural analysis of microbiomes from salt caverns used for underground gas storage
Int. J. Hydrog. Energy 47 (47), 20684 - 20694 10.1016/j.ijhydene.2022.04.170
Schwarz, E., Khurana, S., Chakrawal, A., Chavez Rodriguez, L., Wirsching, J., Streck, T., Manzoni, S., Thullner, M., Pagel, H. (2022):
Spatial control of microbial pesticide degradation in soil: A model-based scenario analysis
Environ. Sci. Technol. 56 (20), 14427 - 14438 10.1021/acs.est.2c03397
Spake, R., Barajas-Barbosa, M.P., Blowes, S.A., Bowler, D.E., Callaghan, C.T., Garbowski, M., Jurburg, S.D., van Klink, R., Korell, L., Ladouceur, E., Rozzi, R., Viana, D.S., Xu, W.-B., Chase, J.M. (2022):
Detecting thresholds of ecological change in the anthropocene
Annu. Rev. Environ. Resour. 47 , 797 - 821 10.1146/annurev-environ-112420-015910
Sturion Lorenzi, A., Bonatelli, M.L., Ahii Chia, M., Peressim, L., Quecine, M.C. (2022):
Opposite sides of Pantoea agglomerans and its associated commercial outlook
Microorganisms 10 (10), art. 2072 10.3390/microorganisms10102072
Sun, F., Mellage, A., Wang, Z., Bakkour, R., Griebler, C., Thullner, M., Cirpka, O.A., Elsner, M. (2022):
Toward improved bioremediation strategies: Response of BAM-degradation activity to concentration and flow changes in an inoculated bench-scale sediment tank
Environ. Sci. Technol. 56 (7), 4050 - 4061 10.1021/acs.est.1c05259
Teetz, N., Holtmann, D., Harnisch, F., Stöckl, M. (2022):
Upgrading Kolbe electrolysis – Highly efficient production of green fuels and solvents by coupling biosynthesis and electrosynthesis
Angew. Chem.-Int. Edit. 61 (50), e202210596 10.1002/anie.202210596
Tucci, M., Cruz Viggi, C., Crognale, S., Matturro, B., Rossetti, S., Capriotti, A.L., Cavaliere, C., Cerrato, A., Montone, C.M., Harnisch, F., Aulenta, F. (2022):
Insights into the syntrophic microbial electrochemical oxidation of toluene: a combined chemical, electrochemical, taxonomical, functional gene-based, and metaproteomic approach
Sci. Total Environ. 850 , art. 157919 10.1016/j.scitotenv.2022.157919
Tucci, M., Milani, A., Resitano, M., Cruz Viggi, C., Giampaoli, O., Miccheli, A., Crognale, S., Matturro, B., Rossetti, S., Harnisch, F., Aulenta, F. (2022):
Syntrophy drives the microbial electrochemical oxidation of toluene in a continuous-flow “bioelectric well”
J. Environ. Chem. Eng. 10 (3), art. 107799 10.1016/j.jece.2022.107799
Undiandeye, J., Gallegos, D., Sträuber, H., Nelles, M., Stinner, W. (2022):
Ensiling parameters in vertical columns and multiple kinetic models evaluation of biomethane potential of ensiled sugar beet leaves
Biofuels-UK 13 (8), 995 - 1005 10.1080/17597269.2022.2059964
Vasileiadis, S., Perruchon, C., Scheer, B., Adrian, L., Steinbach, N., Trevisan, M., Plaza-Bolaños, P., Agüera, A., Chatzinotas, A., Karpouzas, D.G. (2022):
Nutritional inter-dependencies and a carbazole-dioxygenase are key elements of a bacterial consortium relying on a Sphingomonas for the degradation of the fungicide thiabendazole
Environ. Microbiol. 24 (11), 5105 - 5122 10.1111/1462-2920.16116
Walker, A., Houwaart, T., Finzer, P., Ehlkes, L., Tyshaieva, A., Damagnez, M., Strelow, D., Nunes da Rocha, U., Rosenstiel, P., et al. (2022):
Characterization of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection clusters based on integrated genomic surveillance, outbreak analysis and contact tracing in an urban setting
Clin. Infect. Dis. 74 (6), 1039 - 1046 10.1093/cid/ciab588
Werner, K.A., Poehlein, A., Schneider, D., El-Said, K., Wöhrmann, M., Linkert, I., Hübner, T., Brüggemann, N., Prost, K., Daniel, R., Grohmann, E. (2022):
Thermophilic composting of human feces: Development of bacterial community composition and antimicrobial resistance gene pool
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Werner, K.A., Schneider, D., Poehlein, A., Diederich, N., Feyen, L., Axtmann, K., Hübner, T., Brüggemann, N., Prost, K., Daniel, R., Grohmann, E. (2022):
Metagenomic insights into the changes of antibiotic resistance and pathogenicity factor pools upon thermophilic composting of human excreta
Front. Microbiol. 13 , art. 826071 10.3389/fmicb.2022.826071
Xiong, B.-J., Kleinsteuber, S., Sträuber, H., Dusny, C., Harms, H., Wick, L.Y. (2022):
Impact of fungal hyphae on growth and dispersal of obligate anaerobic bacteria in aerated habitats
mBio 13 (3), e00769-22 10.1128/mbio.00769-22
Xiong, B.-J., Stanley, C.E., Dusny, C., Schlosser, D., Harms, H., Wick, L.Y. (2022):
pH distribution along growing fungal hyphae at microscale
J. Fungi 8 (6), art. 599 10.3390/jof8060599
You, X., Kallies, R., Hild, K., Hildebrandt, A., Harms, H., Chatzinotas, A., Wick, L.Y. (2022):
Transport of marine tracer phage particles in soil
Sci. Total Environ. 814 , art. 152704 10.1016/j.scitotenv.2021.152704
You, X., Kallies, R., Kühn, I., Schmidt, M., Harms, H., Chatzinotas, A., Wick, L.Y. (2022):
Phage co-transport with hyphal-riding bacteria fuels bacterial invasion in a water-unsaturated microbial model system
ISME J. 16 (5), 1275 - 1283 10.1038/s41396-021-01155-x
You, X., Klose, N., Kallies, R., Harms, H., Chatzinotas, A., Wick, L.Y. (2022):
Mycelia-assisted isolation of non-host bacteria able to co-transport phages
Viruses 14 (2), art. 195 10.3390/v14020195
Zahn, M., König, G., Pham, H.V.C., Seroka, B., Lazny, R., Yang, G., Ouerfelli, O., Lotowski, Z., Rohwerder, T. (2022):
Mechanistic details of the actinobacterial lyase-catalyzed degradation reaction of 2-hydroxyisobutyryl-CoA
J. Biol. Chem. 298 (1), art. 101522 10.1016/j.jbc.2021.101522
Zhang, X., Barceló, D., Clougherty, R.J., Gao, B., Harms, H., Tefsen, B., Vithanage, M., Wang, H., Wang, Z., Wells, M. (2022):
“Potentially toxic element”─Something that means everything means nothing
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Zhou, J., Saeidi, N., Wick, L.Y., Xie, Y., Kopinke, F.-D., Georgi, A. (2022):
Efficient removal of trifluoroacetic acid from water using surface-modified activated carbon and electro-assisted desorption
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Zhou, L.-J., Wang, Y.-Y., Li, S.-L., Cao, L., Jiang, F.-L., Maskow, T., Liu, Y. (2022):
Core–shell polydopamine/Cu nanometer rods efficiently deactivate microbes by mimicking chloride-activated peroxidases
ACS Omega 7 (34), 29984 - 29994 10.1021/acsomega.2c02986

to index

2021 (64)

Álvarez-Barragán, J., Cravo-Laureau, C., Wick, L.Y., Duran, R. (2021):
Fungi in PAH-contaminated marine sediments: Cultivable diversity and tolerance capacity towards PAH
Mar. Pollut. Bull. 164 , art. 112082 10.1016/j.marpolbul.2021.112082
Aschenbrenner, A.C., Mouktaroudi, M., Krämer, B., Oestreich, M., Antonakos, N., Nuesch-Germano, M., Gkizeli, K., Nunes da Rocha, U., Rosenstiel, P., et al. (2021):
Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients
Genome Med. 13 , art. 7 10.1186/s13073-020-00823-5
Baleeiro, F.C.F., Ardila, M.S., Kleinsteuber, S., Sträuber, H. (2021):
Effect of oxygen contamination on propionate and caproate formation in anaerobic fermentation
Front. Bioeng. Biotechnol. 9 , art. 725443 10.3389/fbioe.2021.725443
Baleeiro, F.C.F., Kleinsteuber, S., Sträuber, H. (2021):
Hydrogen as a co-electron donor for chain elongation with complex communities
Front. Bioeng. Biotechnol. 9 , art. 650631 10.3389/fbioe.2021.650631
Braune, M., Yuan, B., Sträuber, H., Mcdowall, S.C., Nitzsche, R., Gröngröft, A. (2021):
A downstream processing cascade for separation of caproic and caprylic acid from maize silage-based fermentation broth
Front. Bioeng. Biotechnol. 9 , art. 725578 10.3389/fbioe.2021.725578
Calabrese, F., Stryhanyuk, H., Moraru, C., Schlömann, M., Wick, L.Y., Richnow, H.H., Musat, F., Musat, N. (2021):
Metabolic history and metabolic fitness as drivers of anabolic heterogeneity in isogenic microbial populations
Environ. Microbiol. 23 (11), 6764 - 6776 10.1111/1462-2920.15756
Ceballos-Escalera, A., Pous, N., Chiluiza-Ramos, P., Korth, B., Harnisch, F., Bañeras, L., Balaguer, M.D., Puig, S. (2021):
Electro-bioremediation of nitrate and arsenite polluted groundwater
Water Res. 190 , art. 116748 10.1016/j.watres.2020.116748
Clark, A.T., Arnoldi, J.-F., Zelnik, Y.R., Barabas, G., Hodapp, D., Karakoç, C., König, S., Radchuk, V., Donohue, I., Huth, A., Jacquet, C., de Mazancourt, C., Mentges, A., Nothaaß, D., Shoemaker, L.G., Taubert, F., Wiegand, T., Wang, S., Chase, J.M., Loreau, M., Harpole, S. (2021):
General statistical scaling laws for stability in ecological systems
Ecol. Lett. 24 (7), 1474 - 1486 10.1111/ele.13760
Cohen, Y., Pasternak, Z., Müller, S., Hübschmann, T., Schattenberg, F., Sivakala, K.K., Abed-Rabbo, A., Chatzinotas, A., Jurkevitch, E. (2021):
Community and single cell analyses reveal complex predatory interactions between bacteria in high diversity systems
Nat. Commun. 12 , art. 5481 10.1038/s41467-021-25824-9
da Rosa Braun, P.H., Canuto de Almeida e Silva, T., Rodrigo Quejigo, J., Kuchenbuch, A., Rezwan, K., Harnisch, F., Wilhelm, M. (2021):
Impact of surface properties of porous SiOC‐based materials on the performance of Geobacter biofilm anodes
ChemElectroChem 8 (5), 850 - 857 10.1002/celc.202001568
Dalby, F.R., Nikolausz, M., Hansen, M.J., Feilberg, A. (2021):
Effects of combined tannic acid/fluoride on sulfur transformations and methanogenic pathways in swine manure
PLOS One 16 (9), art. e0257759 10.1371/journal.pone.0257759
Dumke, R., de la Cruz Barron, M., Oertel, R., Helm, B., Kallies, R., Berendonk, T.U., Dalpke, A. (2021):
Evaluation of two methods to concentrate SARS-CoV-2 from untreated wastewater
Pathogens 10 (2), art. 195 10.3390/pathogens10020195
Dzofou Ngoumelah, D., Harnisch, F., Kretzschmar, J. (2021):
Benefits of age–Improved resistance of mature electroactive biofilm anodes in anaerobic digestion
Environ. Sci. Technol. 55 (12), 8258 - 8266 10.1021/acs.est.0c07320
Fricke, C., Klee, T., Richter, S., Paufler, S., Harms, H., Maskow, T. (2021):
Numerical heat flow and transport simulation as a development tool for the design of isothermal microcalorimeters
Thermochim. Acta 706 , art. 179070 10.1016/j.tca.2021.179070
Golparvar, A., Kästner, M., Thullner, M. (2021):
Pore-scale modeling of microbial activity: What we have and what we need
Vadose Zone J. 20 (1), e20087 10.1002/vzj2.20087
González-González, S., Astorga-Eló, M., Campos, M., Wick, L.Y., Acuña, J.J., Jorquera, M.A. (2021):
Compost fungi allow for effective dispersal of putative PGP bacteria
Agronomy-Basel 11 (8), art. 1567 10.3390/agronomy11081567
Greinert, T., Vogel, K., Maskow, T., Held, C. (2021):
New thermodynamic activity-based approach allows predicting the feasibility of glycolysis
Sci. Rep. 11 , art. 6125 10.1038/s41598-021-85594-8
Guerra, C.A., Bardgett, R.D., Caon, L., Crowther, T.W., Delgado-Baquerizo, M., Montanarella, L., Navarro, L.M., Orgiazzi, A., Singh, B.K., Tedersoo, L., Vargas-Rojas, R., Briones, M.J.I., Buscot, F., Cameron, E.K., Cesarz, S., Chatzinotas, A., Cowan, D.A., Djukic, I., van der Hoogen, J., Lehmann, A., Maestre, F.T., Marín, C., Reitz, T., Rillig, M.C., Smith, L.C., de Vries, F.T., Weigelt, A., Wall, D.H., Eisenhauer, N. (2021):
Tracking, targeting, and conserving soil biodiversity - A monitoring and indicator system can inform policy
Science 371 (6526), 239 - 241 10.1126/science.abd7926
Harnisch, F., Chávez Morejón, M. (2021):
Hydrogen from water is more than a fuel: Hydrogenations and hydrodeoxygenations for a biobased economy
Chem. Rec. 21 (9), 2277 - 2289 10.1002/tcr.202100034
Harnisch, F., Korth, B. (2021):
First settlers persist
Joule 5 (6), 1316 - 1319 10.1016/j.joule.2021.05.022
Heeger, F., Bourne, E.C., Wurzbacher, C., Funke, E., Lipzen, A., He, G., Ng, V., Grigoriev, I.V., Schlosser, D., Monaghan, M.T. (2021):
Evidence for lignocellulose-decomposing enzymes in the genome and transcriptome of the aquatic hyphomycete Clavariopsis aquatica
J. Fungi 7 (10), art. 854 10.3390/jof7100854
Heyse, J., Schattenberg, F., Rubbens, P., Müller, S., Waegeman, W., Boon, N., Props, R. (2021):
Predicting the presence and abundance of bacterial taxa in environmental communities through flow cytometric fingerprinting
mSystems 6 (5), e00551-21 10.1128/mSystems.00551-21
Hofmann, P., Clark, A., Hoffmann, P., Chatzinotas, A., Harpole, W.S., Dunker, S. (2021):
Beyond nitrogen: phosphorus - estimating the minimum niche dimensionality for resource competition between phytoplankton
Ecol. Lett. 24 (4), 761 - 771 10.1111/ele.13695
Kasmanas, J.C., Bartholomäus, A., Borim Corrêa, F., Tal, T., Jehmlich, N., Herberth, G., von Bergen, M., Stadler, P.F., de Carvalho, A.C.P.L.F., Nunes da Rocha, U. (2021):
HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes
Nucleic Acids Res. 49 (D1), D743 - D750 10.1093/nar/gkaa1031
Keller, N.-S., Hornbruch, G., Lüders, K., Werban, U., Vogt, C., Kallies, R., Dahmke, A., Richnow, H.H. (2021):
Monitoring of the effects of a temporally limited heat stress on microbial communities in a shallow aquifer
Sci. Total Environ. 781 , art. 146377 10.1016/j.scitotenv.2021.146377
Keller-Costa, T., Lago-Lestón, A., Saraiva, J.P., Toscan, R., Silva, S.G., Gonçalves, J., Cox, C.J., Kyrpides, N., Nunes da Rocha, U., Costa, R. (2021):
Metagenomic insights into the taxonomy, function, and dysbiosis of prokaryotic communities in octocorals
Microbiome 9 , art. 72 10.1186/s40168-021-01031-y
Khan, N., Brizola Toscan, R., Lunayo, A., Wamalwa, B., Muge, E., Mulaa, F.J., Kallies, R., Harms, H., Wick, L.Y., Nunes da Rocha, U. (2021):
Draft genome sequence of Fusarium equiseti K3, a fungal species isolated from hexachlorocyclohexane-contaminated soil
Microbiol. Resour. Ann. 10 (47), e00885-21 10.1128/MRA.00885-21
Korth, B., Heber, C., Normant-Saremba, M., Maskow, T., Harnisch, F. (2021):
Precious data from tiny samples: Revealing the correlation between energy content and the chemical oxygen demand of municipal wastewater using micro-bomb combustion calorimetry
Front. Energy Res. 9 , art. 705800 10.3389/fenrg.2021.705800
Krämer, B., Knoll, R., Bonaguro, L., ToVinh, M., Raabe, J., Astaburuaga-García, R., Schulte-Schrepping, J., Nunes da Rocha, U., Rosenstiel, P., et al. (2021):
Early IFN-α signatures and persistent dysfunction are distinguishing features of NK cells in severe COVID-19
Immunity 54 (11), 2650 - 2669.e14 10.1016/j.immuni.2021.09.002
Kretzschmar, J., Harnisch, F. (2021):
Electrochemical impedance spectroscopy on biofilm electrodes – conclusive or euphonious?
Curr. Opin. Electrochem. 29 , art. 100757 10.1016/j.coelec.2021.100757
Li, D., Zhang, H., Xiang, H., Rasul, S., Fontmorin, J.-M., Izadi, P., Roldan, A., Taylor, R., Feng, Y., Banerji, L., Cowan, A., Yu, E.H., Xuan, J. (2021):
How to go beyond C₁ products with electrochemical reduction of CO₂
Sustain. Energ. Fuels 5 (23), 5893 - 5914 10.1039/d1se00861g
Liess, M., Liebmann, L., Vormeier, P., Weisner, O., Altenburger, R., Borchardt, D., Brack, W., Chatzinotas, A., Escher, B., Foit, K., Gunold, R., Henz, S., Hitzfeld, K.L., Schmitt-Jansen, M., Kamjunke, N., Kaske, O., Knillmann, S., Krauss, M., Küster, E., Link, M., Lück, M., Möder, M., Müller, A., Paschke, A., Schäfer, R.B., Schneeweiss, A., Schreiner, V.C., Schulze, T., Schüürmann, G., von Tümpling, W., Weitere, M., Wogram, J., Reemtsma, T. (2021):
Pesticides are the dominant stressors for vulnerable insects in lowland streams
Water Res. 201 , art. 117262 10.1016/j.watres.2021.117262
Logroño, W., Popp, D., Nikolausz, M., Kluge, P., Harms, H., Kleinsteuber, S. (2021):
Microbial communities in flexible biomethanation of hydrogen are functionally resilient upon starvation
Front. Microbiol. 12 , art. 619632 10.3389/fmicb.2021.619632
Melkonian, C., Fillinger, L., Atashgahi, S., Nunes da Rocha, U., Kuiper, E., Olivier, B., Braster, M., Gottstein, W., Helmus, R., Parsons, J.R., Smidt, H., van der Waals, M., Gerritse, J., Brandt, B.W., Röling, W.F.M., Molenaar, D., van Spanning, R.J.M. (2021):
Author correction: High biodiversity in a benzene-degrading nitrate-reducing culture is sustained by a few primary consumers (Communications biology (2021) 4 1 (530))
Commun. Biol. 4 , art. 774 10.1038/s42003-021-02311-x
Melkonian, C., Fillinger, L., Atashgahi, S., Nunes da Rocha, U., Kuiper, E., Olivier, B., Braster, M., Gottstein, W., Helmus, R., Parsons, J.R., Smidt, H., van der Waals, M., Gerritse, J., Brandt, B.W., Röling, W.F.M., Molenaar, D., van Spanning, R.J.M. (2021):
High biodiversity in a benzene-degrading nitrate-reducing culture is sustained by a few primary consumers
Commun. Biol. 4 , art. 530 10.1038/s42003-021-01948-y
Metze, D., Popp, D., Schwab, L., Keller, N.-S., Nunes da Rocha, U., Richnow, H.-H., Vogt, C. (2021):
Temperature management potentially affects carbon mineralization capacity and microbial community composition of a shallow aquifer
FEMS Microbiol. Ecol. 97 (2), fiaa261 10.1093/femsec/fiaa261
Müller, C., Knöller, K., Lucas, R., Kleinsteuber, S., Trabitzsch, R., Weiß, H., Stollberg, R., Richnow, H.H., Vogt, C. (2021):
Benzene degradation in contaminated aquifers: Enhancing natural attenuation by injecting nitrate
J. Contam. Hydrol. 238 , art. 103759 10.1016/j.jconhyd.2020.103759
Neubert, K., Kretzschmar, J., dos Santos, T.R., Härtig, C., Harnisch, F. (2021):
Making sense of gas measurements: quantification of multicomponent gas mixtures in biological and chemical laboratory experiments
ChemTexts 7 (4), art. 27 10.1007/s40828-021-00151-0
Neubert, K., Schmidt, M., Harnisch, F. (2021):
Platinized titanium as alternative cost-effective anodes for the efficient Kolbe electrolysis in aqueous electrolyte solutions
ChemSusChem 14 (15), 3097 - 3109 10.1002/cssc.202100854
Oliveira, V., Polónia, A.R.M., Cleary, D.F.R., Huang, Y.M., de Voogd, N.J., Nunes da Rocha, U., Gomes, N.C.M. (2021):
Characterization of putative circular plasmids in sponge‐associated bacterial communities using a selective multiply‐primed rolling circle amplification
Mol. Ecol. Resour. 21 (1), 110 - 121 10.1111/1755-0998.13248
Pous, N., Korth, B., Osset-Álvarez, M., Balaguer, M.D., Harnisch, F., Puig, S. (2021):
Electrifying biotrickling filters for the treatment of aquaponics wastewater
Bioresour. Technol. 319 , art. 124221 10.1016/j.biortech.2020.124221
Qin, W., Stärk, H.-J., Müller, S., Reemtsma, T., Wagner, S. (2021):
Determination of elemental distribution and evaluation of elemental concentration in single Saccharomyces cerevisiae cells using single cell-inductively coupled plasma mass spectrometry
Metallomics 13 (6), mfab032 10.1093/mtomcs/mfab032
Rago, L., Popp, D., Heiker, J.T., Harnisch, F. (2021):
Electroactive microorganisms in mouse feces
Electrochim. Acta 365 , art. 137326 10.1016/j.electacta.2020.137326
Rodrigo Quejigo, J., Korth, B., Kuchenbuch, A., Harnisch, F. (2021):
Redox potential heterogeneity in fixed bed electrodes leads to microbial stratification and inhomogeneous performance
ChemSusChem 14 (4), 1155 - 1165 10.1002/cssc.202002611
Rossi, C., Zadra, N., Fevola, C., Ecke, F., Hörnfeldt, B., Kallies, R., Kazimirova, M., Magnusson, M., Olsson, G.E., Ulrich, R.G., Jääskeläinen, A.J., Henttonen, H., Hauffe, H.C. (2021):
Evolutionary relationships of Ljungan virus variants circulating in multi-host systems across Europe
Viruses 13 (7), art. 1317 10.3390/v13071317
Rummel, C.D., Lechtenfeld, O.J., Kallies, R., Benke, A., Herzsprung, P., Rynek, R., Wagner, S., Potthoff, A., Jahnke, A., Schmitt-Jansen, M. (2021):
Conditioning film and early biofilm succession on plastic surfaces
Environ. Sci. Technol. 55 (16), 11006 - 11018 10.1021/acs.est.0c07875
Santoro, C., Babanova, S., Cristiani, P., Artyushkova, K., Atanassov, P., Bergel, A., Bretschger, O., Brown, R.K., Carpenter, K., Colombo, A., Cortese, R., Erable, B., Harnisch, F., Kodali, M., Phadke, S., Riedl, S., Rosa, L.F.M., Schröder, G. (2021):
How comparable are microbial electrochemical systems around the globe? An electrochemical and microbiological cross‐laboratory study
ChemSusChem 14 (11), 2313 - 2330 10.1002/cssc.202100294
Santoro, C., Babanova, S., Cristiani, P., Artyushkova, K., Atanassov, P., Bergel, A., Bretschger, O., Brown, R.K., Carpenter, K., Colombo, A., Cortese, R., Erable, B., Harnisch, F., Kodali, M., Phadke, S., Riedl, S., Rosa, L.F.M., Schröder, U. (2021):
Cover profile: How comparable are microbial electrochemical systems around the globe? An electrochemical and microbiological cross‐laboratory study
ChemSusChem 14 (11), 2267 - 2267 10.1002/cssc.202100824
Saraiva, J.P., Bartholomäus, A., Kallies, R., Gomes, M., Bicalho, M., Kasmanas, J.C., Vogt, C., Chatzinotas, A., Stadler, P., Dias, O., Nunes da Rocha, U. (2021):
OrtSuite: from genomes to prediction of microbial interactions within targeted ecosystem processes
Life Sci. Alliance 4 (12), e202101167 10.26508/lsa.202101167
Saraiva, J.P., Worrich, A., Karakoç, C., Kallies, R., Chatzinotas, A., Centler, F., Nunes da Rocha, U. (2021):
Mining synergistic microbial interactions: a roadmap on how to integrate multi-omics data
Microorganisms 9 (4), art. 840 10.3390/microorganisms9040840
Scarabotti, F., Rago, L., Bühler, K., Harnisch, F. (2021):
The electrode potential determines the yield coefficients of early-stage Geobacter sulfurreducens biofilm anodes
Bioelectrochemistry 140 , art. 107752 10.1016/j.bioelechem.2021.107752
Schmidt, J., Krohn, S., Kallies, R., Schneider, H., Zeller, K., Ziebolz, D., Berg, T., Haak, R. (2021):
Antibacterial effect of a brominated self-etch adhesive on carious dentin - An in vivo study
J. Dent. 105 , art. 103555 10.1016/j.jdent.2020.103555
Sun, F., Mellage, A., Gharasoo, M., Melsbach, A., Cao, X., Zimmermann, R., Griebler, C., Thullner, M., Cirpka, O.A., Elsner, M. (2021):
Mass-transfer-limited biodegradation at low concentrations—Evidence from reactive transport modeling of isotope profiles in a bench-scale aquifer
Environ. Sci. Technol. 55 (11), 7386 - 7397 10.1021/acs.est.0c08566
Sun, F., Peters, J., Thullner, M., Cirpka, O.A., Elsner, M. (2021):
Magnitude of diffusion- and transverse dispersion-induced isotope fractionation of organic compounds in aqueous systems
Environ. Sci. Technol. 55 (8), 4772 - 4782 10.1021/acs.est.0c06741
Tláskal, V., Brabcová, V., Větrovský, T., Jomura, M., López-Mondéjar, R., Oliveira Monteiro, L.M., Saraiva, J.P., Human, Z.R., Cajthaml, T., Nunes da Rocha, U., Baldrian, P. (2021):
Complementary roles of wood-inhabiting fungi and bacteria facilitate deadwood decomposition
mSystems 6 (1), e01078-20 10.1128/mSystems.01078-20
Tláskal, V., Brabcová, V., Větrovský, T., López-Mondéjar, R., Oliveira Monteiro, L.M., Saraiva, J.P., Nunes da Rocha, U., Baldrian, P. (2021):
Metagenomes, metatranscriptomes and microbiomes of naturally decomposing deadwood
Sci. Data 8 , art. 198 10.1038/s41597-021-00987-8
Tucci, M., Cruz Viggi, C., Resitano, M., Matturro, B., Crognale, S., Pietrini, I., Rossetti, S., Harnisch, F., Aulenta, F. (2021):
Simultaneous removal of hydrocarbons and sulfate from groundwater using a “bioelectric well”
Electrochim. Acta 388 , art. 138636 10.1016/j.electacta.2021.138636
Vogel, K., Wei, R., Pfaff, L., Breite, D., Al-Fathi, H., Ortmann, C., Estrela-Lopis, I., Venus, T., Schulze, A., Harms, H., Bornscheuer, U.T., Maskow, T. (2021):
Enzymatic degradation of polyethylene terephthalate nanoplastics analyzed in real time by isothermal titration calorimetry
Sci. Total Environ. 773 , art. 145111 10.1016/j.scitotenv.2021.145111
Voigt, E., Rall, B.C., Chatzinotas, A., Brose, U., Rosenbaum, B. (2021):
Phage strategies facilitate bacterial coexistence under environmental variability
PeerJ 9 , art. e12194 10.7717/peerj.12194
Vučić, V., Müller, S. (2021):
New developments in biological phosphorus accessibility and recovery approaches from soil and waste streams
Eng. Life Sci. 21 (3-4), 77 - 86 10.1002/elsc.202000076
Vučić, V., Süring, C., Harms, H., Müller, S., Günther, S. (2021):
A framework for P-cycle assessment in wastewater treatment plants
Sci. Total Environ. 760 , art. 143392 10.1016/j.scitotenv.2020.143392
Warnat-Herresthal, S., Schultze, H., Shastry, K.L., Manamohan, S., Mukherjee, S., Garg, V., Sarveswara, R., Händler, K., Nunes da Rocha, U., Rosenstiel, P., et al. (2021):
Swarm Learning for decentralized and confidential clinical machine learning
Nature 594 (7862), 265 - 270 10.1038/s41586-021-03583-3
Weitere, M., Altenburger, R., Anlanger, C., Baborowski, M., Bärlund, I., Beckers, L.-M., Borchardt, D., Brack, W., Brase, L., Busch, W., Chatzinotas, A., Deutschmann, B., Eligehausen, J., Frank, K., Graeber, D., Griebler, C., Hagemann, J., Herzsprung, P., Hollert, H., Inostroza, P.A., Jäger, C.G., Kallies, R., Kamjunke, N., Karrasch, B., Kaschuba, S., Kaus, A., Klauer, B., Knöller, K., Koschorreck, M., Krauss, M., Kunz, J.V., Kurz, M.J., Liess, M., Mages, M., Müller, C., Muschket, M., Musolff, A., Norf, H., Pöhlein, F., Reiber, L., Risse-Buhl, U., Schramm, K.-W., Schmitt-Jansen, M., Schmitz, M., Strachauer, U., von Tümpling, W., Weber, N., Wild, R., Wolf, C., Brauns, M. (2021):
Disentangling multiple chemical and non-chemical stressors in a lotic ecosystem using a longitudinal approach
Sci. Total Environ. 769 , art. 144324 10.1016/j.scitotenv.2020.144324
Zhou, J., Saeidi, N., Wick, L.Y., Kopinke, F.-D., Georgi, A. (2021):
Adsorption of polar and ionic organic compounds on activated carbon: Surface chemistry matters
Sci. Total Environ. 794 , art. 148508 10.1016/j.scitotenv.2021.148508

to index

2020 (60)

Alvarez Esquivel, D.Y., Guo, Y., Brown, R.K., Müller, S., Schröder, U., Harnisch, F. (2020):
Investigating community dynamics and performance during microbial electrochemical degradation of whey
ChemElectroChem 7 (4), 989 - 997 10.1002/celc.201902109
Askitosari, T.D., Berger, C., Tiso, T., Harnisch, F., Blank, L.M., Rosenbaum, M.A. (2020):
Coupling an electroactive Pseudomonas putida KT2440 with bioelectrochemical rhamnolipid production
Microorganisms 8 (12), art. 1959 10.3390/microorganisms8121959
Balciunas, E.M., Kappelmeyer, U., Harms, H., Heipieper, H.J. (2020):
Increasing ibuprofen degradation in constructed wetlands by bioaugmentation with gravel containing biofilms of an ibuprofen-degrading Sphingobium yanoikuyae
Eng. Life Sci. 20 (5-6), 160 - 167 10.1002/elsc.201900097
Banitz, T., Chatzinotas, A., Worrich, A. (2020):
Prospects for integrating disturbances, biodiversity and ecosystem functioning using microbial systems
Front. Ecol. Evol. 8 , art. 21 10.3389/fevo.2020.00021
Becker, D., Popp, D., Harms, H., Centler, F. (2020):
A modular metagenomics pipeline allowing for the inclusion of prior knowledge using the example of anaerobic digestion
Microorganisms 8 (5), art. 669 10.3390/microorganisms8050669
Bernardes, J.P., Mishra, N., Tran, F., Bahmer, T., Best, L., Blase, J.I., Bordoni, D., Franzenburg, J., Geisen, U., Josephs-Spaulding, J., Köhler, P., Künstner, A., Rosati, E., Aschenbrenner, A.C., Bacher, P., Baran, N., Boysen, T., Brandt, B., Bruse, N., Dörr, J., Dräger, A., Elke, G., Ellinghaus, D., Fischer, J., Forster, M., Franke, A., Franzenburg, S., Frey, N., Friedrichs, A., Fuß, J., Glück, A., Hamm, J., Hinrichsen, F., Hoeppner, M.P., Imm, S., Junker, R., Kaiser, S., Kan, Y.H., Knoll, R., Lange, C., Laue, G., Lier, C., Lindner, M., Marinos, G., Markewitz, R., Nattermann, J., Noth, R., Pickkers, P., Rabe, K.F., Renz, A., Röcken, C., Rupp, J., Schaffarzyk, A., Scheffold, A., Schulte-Schrepping, J., Schunk, D., Skowasch, D., Ulas, T., Wandinger, K.-P., Wittig, M., Zimmermann, J., Busch, H., Hoyer, B.F., Kaleta, C., Heyckendorf, J., Kox, M., Rybniker, J., Schreiber, S., Schultze, J.L., Rosenstiel, P., Banovich, N.E., Desai, T., Eickelberg, O., Haniffa, M., Horvath, P., Kropski, J.A., Lafyatis, R., Lundeberg, J., Meyer, K., Nawijn, M.C., Nikolic, M., Montanes, J.O., Pe’er, D., Tata, P.R., Rawlins, E., Regev, A., Reyfman, P., Samakovlis, C., Schultze, J., Shalek, A., Shepherd, D., Spence, J., Teichmann, S., Theis, F., Tsankov, A., van den Berge, M., von Papen, M., Whitsett, J., Zaragosi, L.E., Angelov, A., Bals, R., Bartholomäus, A., Becker, A., Bezdan, D., Bonifacio, E., Bork, P., Clavel, T., Colme-Tatche, M., Diefenbach, A., Dilthey, A., Fischer, N., Förstner, K., Frick, J.-S., Gagneur, J., Goesmann, A., Hain, T., Hummel, M., Janssen, S., Kalinowski, J., Kallies, R., Kehr, B., Keller, A., Kim-Hellmuth, S., Klein, C., Kohlbacher, O., Korbel, J.O., Kurth, I., Landthaler, M., Li, Y., Ludwig, K., Makarewicz, O., Marz, M., McHardy, A., Mertes, C., Nöthen, M., Nürnberg, P., Ohler, U., Ossowski, S., Overmann, J., Peter, S., Pfeffer, K., Poetsch, A.R., Pühler, A., Rajewsky, N., Ralser, M., Rieß, O., Ripke, S., Nunes da Rocha, U., Saliba, A.-E., Sander, L.E., Sawitzki, B., Schiffer, P., Schulte, E.-C., Sczyrba, A., Stegle, O., Stoye, J., Vehreschild, J., Vogel, J., von Kleist, M., Walker, A., Walter, J., Wieczorek, D., Ziebuhr, J. (2020):
Longitudinal multi-omics analyses identify responses of megakaryocytes, erythroid cells, and plasmablasts as hallmarks of severe COVID-19
Immunity 53 (6), 1296 - 1314 10.1016/j.immuni.2020.11.017
Bernardo-Cravo, A.P., Schmeller, D.S., Chatzinotas, A., Vredenburg, V.T., Loyau, A. (2020):
Environmental factors and host microbiomes shape host–pathogen dynamics
Trends Parasitol. 36 (7), 616 - 633 10.1016/j.pt.2020.04.010
Borim Corrêa, F., Saraiva, J.P., Stadler, P.F., Nunes da Rocha, U. (2020):
TerrestrialMetagenomeDB: a public repository of curated and standardized metadata for terrestrial metagenomes
Nucleic Acids Res. 48 (D1), D626 - D632 10.1093/nar/gkz994
Carstens, L., Cowan, A.R., Seiwert, B., Schlosser, D. (2020):
Biotransformation of phthalate plasticizers and bisphenol A by marine-derived, freshwater, and terrestrial fungi
Front. Microbiol. 11 , art. 317 10.3389/fmicb.2020.00317
Centler, F., Günnigmann, S., Fetzer, I., Wendeberg, A. (2020):
Keystone species and modularity in microbial hydrocarbon degradation uncovered by network analysis and association rule mining
Microorganisms 8 (2), art. 190 10.3390/microorganisms8020190
Chen, S.-C., Sun, G.-X., Yan, Y., Konstantinidis, K.T., Zhang, S.-Y., Deng, Y., Li, X.-M., Cui, H.-L., Musat, F., Popp, D., Rosen, B.P., Zhu, Y.-G. (2020):
The Great Oxidation Event expanded the genetic repertoire of arsenic metabolism and cycling
Proc. Natl. Acad. Sci. U.S.A. 117 (19), 10414 - 10421 10.1073/pnas.2001063117
Cichocki, N., Hübschmann, T., Schattenberg, F., Kerckhof, F.M., Overmann, J., Müller, S. (2020):
Bacterial mock communities as standards for reproducible cytometric microbiome analysis
Nat. Protoc. 15 , 2788 - 2812 10.1038/s41596-020-0362-0
Dalby, F.R., Hansen, M.J., Feilberg, A., Kümmel, S., Nikolausz, M. (2020):
Effect of tannic acid combined with fluoride and lignosulfonic acid on anaerobic digestion in the agricultural waste management chain
Bioresour. Technol. 307 , art. 123171 10.1016/j.biortech.2020.123171
Feng, L., Lemes Perschke, Y.M., Fontaine, D., Nikolausz, M., Ward, A.J., Nunes da Rocha, U., Borim Corrêa, F., Eriksen, J., Sørensen, P., Møller, H.B. (2020):
Anaerobic digestion of co-ensiled cover crop and barley straw: Effect of co-ensiling ratios, manure addition and impact on microbial community structure
Ind. Crop. Prod. 144 , art. 112025 10.1016/j.indcrop.2019.112025
Formann, S., Hahn, A., Janke, L., Stinner, W., Sträuber, H., Logroño, W., Nikolausz, M. (2020):
Beyond sugar and ethanol production: Value generation opportunities through sugarcane residues
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Fricke, C., Harms, H., Maskow, T. (2020):
How to speed up the detection of aerobic microbial contaminations by using isothermal microcalorimetry
J. Therm. Anal. Calorim. 142 (5), 1933 - 1949 10.1007/s10973-020-09986-0
Fricke, C., Xu, J., Jiang, F.-L., Liu, Y., Harms, H., Maskow, T. (2020):
Rapid culture‐based detection of Legionella pneumophila using isothermal microcalorimetry with an improved evaluation method
Microb. Biotechnol. 13 (4), 1262 - 1272 10.1111/1751-7915.13563
Fruehauf, H.M., Enzmann, F., Harnisch, F., Ulber, R., Holtmann, D. (2020):
Microbial electrosynthesis – An inventory on technology readiness level and performance of different process variants
Biotechnol. J. 15 (10), art. 2000066 10.1002/biot.202000066
Greinert, T., Vogel, K., Mühlenweg, J.-K., Sadowski, G., Maskow, T., Held, C. (2020):
Standard Gibbs energy of metabolic reactions: VI. Glyceraldehyde 3-phosphate dehydrogenase reaction
Fluid Phase Equilib. 517 , art. 112597 10.1016/j.fluid.2020.112597
Greinert, T., Vogel, K., Seifert, A.I., Siewert, R., Andreeva, I.V., Verevkin, S.P., Maskow, T., Sadowski, G., Held, C. (2020):
Standard Gibbs energy of metabolic reactions: V. Enolase reaction
BBA-Proteins Proteomics 1868 (4), art. 140365 10.1016/j.bbapap.2020.140365
Guerra, C.A., Heintz-Buschart, A., Sikorski, J., Chatzinotas, A., Guerrero-Ramírez, N., Cesarz, S., Beaumelle, L., Rillig, M.C., Maestre, F.T., Delgado-Baquerizo, M., Buscot, F., Overmann, J., Patoine, G., Phillips, H.R.P., Winter, M., Wubet, T., Küsel, K., Bardgett, R.D., Cameron, E.K., Cowan, D., Grebenc, T., Marín, C., Orgiazzi, A., Singh, B.K., Wall, D.H., Eisenhauer, N. (2020):
Blind spots in global soil biodiversity and ecosystem function research
Nat. Commun. 11 (1), art. 3870 10.1038/s41467-020-17688-2
Guo, Y., Rosa, L.F.M., Müller, S., Harnisch, F. (2020):
Monitoring stratification of anode biofilms in bioelectrochemical laminar flow reactors using flow cytometry
Environ. Sci. Ecotechnol. 4 , art. 10062 10.1016/j.ese.2020.100062
Haange, S.-B., Jehmlich, N., Krügel, U., Hintschich, C., Wehrmann, D., Hankir, M., Seyfried, F., Froment, J., Hübschmann, T., Müller, S., Wissenbach, D.K., Kang, K.H., Buettner, C., Panagiotou, G., Noll, M., Rolle-Kampczyk, U., Fenske, W., von Bergen, M. (2020):
Gastric bypass surgery in a rat model alters the community structure and functional composition of the intestinal microbiota independently of weight loss
Microbiome 8 , art. 13 10.1186/s40168-020-0788-1
Hegner, R., Neubert, K., Kroner, C., Holtmann, D., Harnisch, F. (2020):
Coupled electrochemical and microbial catalysis for the production of polymer bricks
ChemSusChem 13 (19), 5295 - 5300 10.1002/cssc.202001272
Karakoç, C., Clark, A.T., Chatzinotas, A. (2020):
Diversity and coexistence are influenced by time-dependent species interactions in a predator-prey system
Ecol. Lett. 23 (6), 983 - 993 10.1111/ele.13500
Koch, C., Kuchenbuch, A., Marosvölgyi, M., Weisshart, K., Harnisch, F. (2020):
Label‐free four‐dimensional visualization of anaerobically growing electroactive biofilms
Cytom. Part A 97 (7), 737 - 741 10.1002/cyto.a.24169
König, S., Vogel, H.-J., Harms, H., Worrich, A. (2020):
Physical, chemical and biological effects on soil bacterial dynamics in microscale models
Front. Ecol. Evol. 8 , art. 53 10.3389/fevo.2020.00053
Kopinke, F.-D., Harms, H. (2020):
Letter: What are the active species in the photocatalytic disinfection of water?
Chem 6 (4), 806 - 807 10.1016/j.chempr.2020.03.008
Korth, B., Kretzschmar, J., Bartz, M., Kuchenbuch, A., Harnisch, F. (2020):
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms
PLOS One 15 (6), e0234077 10.1371/journal.pone.0234077
Korth, B., Kuchenbuch, A., Harnisch, F. (2020):
Cover profile: Availability of hydrogen shapes the microbial abundance in biofilm anodes based on Geobacter enrichment
ChemElectroChem 7 (18), 3683 - 3683 10.1002/celc.202001006
Korth, B., Kuchenbuch, A., Harnisch, F. (2020):
Availability of hydrogen shapes the microbial abundance in biofilm anodes based on Geobacter enrichment
ChemElectroChem 7 (18), 3720 - 3724 10.1002/celc.202000731
Krause, J.L., Schaepe, S.S., Fritz-Wallace, K., Engelmann, B., Rolle-Kampczyk, U., Kleinsteuber, S., Schattenberg, F., Liu, Z., Müller, S., Jehmlich, N., von Bergen, M., Herberth, G. (2020):
Following the community development of SIHUMIx – a new intestinal in vitro model for bioreactor use
Gut Microbes 11 (4), 1116 - 1129 10.1080/19490976.2019.1702431
Krause, J.L., Schäpe, S.S., Schattenberg, F., Müller, S., Ackermann, G., Rolle-Kampczyk, U.E., Jehmlich, N., Pierzchalski, A., von Bergen, M., Herberth, G. (2020):
The activation of mucosal-associated invariant T (MAIT) cells is affected by microbial diversity and riboflavin utilization in vitro
Front. Microbiol. 11 , art. 755 10.3389/fmicb.2020.00755
Lian, S., Nikolausz, M., Nijenhuis, I., Nunes da Rocha, U., Liu, B., Borim Corrêa, F., Saraiva, J.P., Richnow, H.H. (2020):
Biotransformation of hexachlorocyclohexanes contaminated biomass for energetic utilization demonstrated in continuous anaerobic digestion system
J. Hazard. Mater. 384 , art. 121448 10.1016/j.jhazmat.2019.121448
Liu, B., Kleinsteuber, S., Centler, F., Harms, H., Sträuber, H. (2020):
Competition between butyrate fermenters and chain-elongating bacteria limits the efficiency of medium-chain carboxylate production
Front. Microbiol. 11 , art. 336 10.3389/fmicb.2020.00336
Liu, B., Popp, D., Müller, N., Sträuber, H., Harms, H., Kleinsteuber, S. (2020):
Three novel Clostridia isolates produce n-caproate and iso-butyrate from lactate: comparative genomics of chain-elongating bacteria
Microorganisms 8 (12), art. 1970 10.3390/microorganisms8121970
Liu, B., Popp, D., Sträuber, H., Harms, H., Kleinsteuber, S. (2020):
Draft genome sequences of three Clostridia isolates involved in lactate-based chain elongation
Microbiol. Resour. Ann. 9 (32), e00679-20 10.1128/MRA.00679-20
Liu, Z., Müller, S. (2020):
Bacterial community diversity dynamics highlight degrees of nestedness and turnover patterns
Cytom. Part A 97 (7), 742 - 748 10.1002/cyto.a.23965
Logroño, W., Popp, D., Kleinsteuber, S., Sträuber, H., Harms, H., Nikolausz, M. (2020):
Microbial resource management for ex situ biomethanation of hydrogen at alkaline pH
Microorganisms 8 , art. 614 10.3390/microorganisms8040614
López-Mondéjar, R., Tláskal, V., Větrovský, T., Štursová, M., Toscan, R., Nunes da Rocha, U., Baldrian, P. (2020):
Metagenomics and stable isotope probing reveal the complementary contribution of fungal and bacterial communities in the recycling of dead biomass in forest soil
Soil Biol. Biochem. 148 , art. 107875 10.1016/j.soilbio.2020.107875
Marques, M., Borges, N., Silva, S.G., Nunes da Rocha, U., Lago-Lestón, A., Keller-Costa, T., Costa, R. (2020):
Metagenome-assembled genome sequences of three uncultured Planktomarina sp. strains from the Northeast Atlantic Ocean
Microbiol. Resour. Ann. 9 (12), e00127-20 10.1128/MRA.00127-20
Mayr, J.C., Rosa, L.F.M., Klinger, N., Grosch, J.-H., Harnisch, F., Spiess, A.C. (2020):
Response‐surface‐optimized and scaled‐up microbial electrosynthesis of chiral alcohols
ChemSusChem 13 (7), 1808 - 1816 10.1002/cssc.201903428
Mogodiniyai Kasmaei, K., Schlosser, D., Sträuber, H., Kleinsteuber, S. (2020):
Does glucose affect the de-esterification of methyl ferulate by Lactobacillus buchneri?
MicrobiologyOpen 9 (2), e971 10.1002/mbo3.971
Müller, S., Chang, H.-D. (2020):
Microorganisms and their activities within microbial communities
Cytom. Part A 97 (7), 681 - 682 10.1002/cyto.a.24175
Ozbayram, E.G., Kleinsteuber, S., Nikolausz, M. (2020):
Biotechnological utilization of animal gut microbiota for valorization of lignocellulosic biomass
Appl. Microbiol. Biotechnol. 104 (2), 489 - 508 10.1007/s00253-019-10239-w
Popp, D., Centler, F. (2020):
μBialSim: Constraint-based dynamic simulation of complex microbiomes
Front. Bioeng. Biotechnol. 8 , art. 574 10.3389/fbioe.2020.00574
Risse-Buhl, U., Anlanger, C., Chatzinotas, A., Noss, C., Lorke, A., Weitere, M. (2020):
Near streambed flow shapes microbial guilds within and across trophic levels in fluvial biofilms
Limnol. Oceanogr. 65 (10), 2261 - 2277 10.1002/lno.11451
Rohwerder, T. (2020):
New structural insights into bacterial sulfoacetaldehyde and taurine metabolism
Biochem. J. 477 (8), 1367 - 1371 10.1042/BCJ20200079
Rohwerder, T., Rohde, M.-T., Jehmlich, N., Purswani, J. (2020):
Actinobacterial degradation of 2-hydroxyisobutyric acid proceeds via acetone and formyl-CoA by employing a thiamine-dependent lyase reaction
Front. Microbiol. 11 , art. 691 10.3389/fmicb.2020.00691
Sadik, A., Somarribas Patterson, L.F., Öztürk, S., Mohapatra, S.R., Panitz, V., Secker, P.F., Pfänder, P., Loth, S., Salem, H., Prentzell, M.T., Berdel, B., Iskar, M., Faessler, E., Reuter, F., Kirst, I., Kalter, V., Foerster, K.I., Jäger, E., Ramallo Guevara, C., Sobeh, M., Hielscher, T., Poschet, G., Reinhardt, A., Hassel, J.C., Zapatka, M., Hahn, U., von Deimling, A., Hopf, C., Schlichting, R., Escher, B.I., Burhenne, J., Haefeli, W.E., Ishaque, N., Böhme, A., Schäuble, S., Thedieck, K., Trump, S., Seiffert, M., Opitz, C.A. (2020):
IL4I1 is a metabolic immune checkpoint that activates the AHR and promotes tumor progression
Cell 182 (5), 1252 - 1270.e34 10.1016/j.cell.2020.07.038
Schmidt, J., Buenger, L., Krohn, S., Kallies, R., Zeller, K., Schneider, H., Ziebolz, D., Berg, T., Haak, R. (2020):
Effect of a bioactive cement on the microbial community in carious dentin after selective caries removal – An in-vivo study
J. Dent. 92 , art. 103264 10.1016/j.jdent.2019.103264
Schulte-Schrepping, J., Reusch, N., Paclik, D., Baßler, K., Schlickeiser, S., Zhang, B., Krämer, B., Krammer, T., Brumhard, S., Bonaguro, L., De Domenico, E., Wendisch, D., Grasshoff, M., Kapellos, T.S., Beckstette, M., Pecht, T., Saglam, A., Dietrich, O., Mei, H.E., Schulz, A.R., Conrad, C., Kunkel, D., Vafadarnejad, E., Xu, C.-J., Horne, A., Herbert, M., Drews, A., Thibeault, C., Pfeiffer, M., Hippenstiel, S., Hocke, A., Müller-Redetzky, H., Heim, K.-M., Machleidt, F., Uhrig, A., Bosquillon de Jarcy, L., Jürgens, L., Stegemann, M., Glösenkamp, C.R., Volk, H.-D., Goffinet, C., Landthaler, M., Wyler, E., Georg, P., Schneider, M., Dang-Heine, C., Neuwinger, N., Kappert, K., Tauber, R., Corman, V., Raabe, J., Kaiser, K.M., Vinh, M.T., Rieke, G., Meisel, C., Ulas, T., Becker, M., Geffers, R., Witzenrath, M., Drosten, C., Suttorp, N., von Kalle, C., Kurth, F., Händler, K., Schultze, J.L., Aschenbrenner, A.C., Li, Y., Nattermann, J., Sawitzki, B., Saliba, A.-E., Sander, L.E., Angelov, A., Bals, R., Bartholomäus, A., Becker, A., Bezdan, D., Bonifacio, E., Bork, P., Clavel, T., Colome-Tatche, M., Diefenbach, A., Dilthey, A., Fischer, N., Förstner, K., Frick, J.-S., Gagneur, J., Goesmann, A., Hain, T., Hummel, M., Janssen, S., Kalinowski, J., Kallies, R., Kehr, B., Keller, A., Kim-Hellmuth, S., Klein, C., Kohlbacher, O., Korbel, J.O., Kurth, I., Ludwig, K., Makarewicz, O., Marz, M., McHardy, A., Mertes, C., Nöthen, M., Nürnberg, P., Ohler, U., Ossowski, S., Overmann, J., Peter, S., Pfeffer, K., Poetsch, A.R., Pühler, A., Rajewsky, N., Ralser, M., Rieß, O., Ripke, S., Nunes da Rocha, U., Rosenstiel, P., Schiffer, P., Schulte, E.-C., Sczyrba, A., Stegle, O., Stoye, J., Theis, F., Vehreschild, J., Vogel, J., von Kleist, M., Walker, A., Walter, J., Wieczorek, D., Ziebuhr, J. (2020):
Severe COVID-19 is marked by a dysregulated myeloid cell compartment
Cell 182 (6), 1419 - 1440 10.1016/j.cell.2020.08.001
Shan, Y., Liu, L., Liu, Y., Harms, H., Wick, L.Y. (2020):
Effects of electrokinetic phenomena on bacterial deposition monitored by quartz crystal microbalance with dissipation monitoring
Environ. Sci. Technol. 54 (21), 14036 - 14045 10.1021/acs.est.0c04347
Shan, Y., Qin, J., Harms, H., Wick, L.Y. (2020):
Electrokinetic effects on the interaction of phenanthrene with geo-sorbents
Chemosphere 242 , art. 125161 10.1016/j.chemosphere.2019.125161
Tomaszewski, E.J., Olson, L., Obst, M., Byrne, J.M., Kappler, A., Muehe, E.M. (2020):
Complexation by cysteine and iron mineral adsorption limit cadmium mobility during metabolic activity of Geobacter sulfurreducens
Environ. Sci.-Process Impacts 22 (9), 1877 - 1887 10.1039/d0em00244e
Vogel, K., Greinert, T., Harms, H., Sadowski, G., Held, C., Maskow, T. (2020):
Influence of cytosolic conditions on the reaction equilibrium and the reaction enthalpy of the enolase reaction accessed by calorimetry and van ‘t HOFF
Biochim. Biophys. Acta-Gen. Subj. 1864 (10), art. 129675 10.1016/j.bbagen.2020.129675
Vogel, K., Greinert, T., Held, C., Harms, H., Maskow, T. (2020):
Application of irreversible thermodynamics to determine the influence of cell mimicking conditions on the kinetics of equilibrium reactions of the glycolysis
Biophys. J. 118 (3, Suppl. 1), 346a - 347a 10.1016/j.bpj.2019.11.2000
Vogel, K., Greinert, T., Reichard, M., Held, C., Harms, H., Maskow, T. (2020):
Thermodynamics and kinetics of glycolytic reactions. Part II: Influence of cytosolic conditions on thermodynamic state variables and kinetic parameters
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Vogel, K., Greinert, T., Reichard, M., Held, C., Harms, H., Maskow, T. (2020):
Thermodynamics and kinetics of glycolytic reactions. Part I: Kinetic modeling based on irreversible thermodynamics and validation by calorimetry
Int. J. Mol. Sci. 21 (21), art. 8341 10.3390/ijms21218341
Weise, H., Auge, H., Baessler, C., Bärlund, I., Bennett, E.M., Berger, U., Bohn, F., Bonn, A., Borchardt, D., Brand, F., Chatzinotas, A., Corstanje, R., De Laender, F., Dietrich, P., Dunker, S., Durka, W., Fazey, I., Groeneveld, J., Guilbaud, C.S.E., Harms, H., Harpole, S., Harris, J., Jax, K., Jeltsch, F., Johst, K., Joshi, J., Klotz, S., Kühn, I., Kuhlicke, C., Müller, B., Radchuk, V., Reuter, H., Rinke, K., Schmitt-Jansen, M., Seppelt, R., Singer, A., Standish, R.J., Thulke, H.-H., Tietjen, B., Weitere, M., Wirth, C., Wolf, C., Grimm, V. (2020):
Resilience trinity: safeguarding ecosystem functioning and services across three different time horizons and decision contexts
Oikos 129 (4), 445 - 456 10.1111/oik.07213

to index

2019 (57)

Al-Fathi, H., Koch, M., Lorenz, W.G., Lechner, U. (2019):
Anaerobic degradation of 2,4,5-trichlorophenoxyacetic acid by enrichment cultures from freshwater sediments
Environ. Sci. Pollut. Res. 26 (33), 34459 - 34467 10.1007/s11356-019-06584-y
Badia-Fabregat, M., Rago, L., Baeza, J.A., Guisasola, A. (2019):
Hydrogen production from crude glycerol in an alkaline microbial electrolysis cell
Int. J. Hydrog. Energy 44 (32), 17204 - 17213 10.1016/j.ijhydene.2019.03.193
Baleeiro, F.C.F., Kleinsteuber, S., Neumann, A., Sträuber, H. (2019):
Syngas-aided anaerobic fermentation for medium-chain carboxylate and alcohol production: the case for microbial communities
Appl. Microbiol. Biotechnol. 103 (21-22), 8689 - 8709 10.1007/s00253-019-10086-9
Bonk, F., Popp, D., Weinrich, S., Sträuber, H., Becker, D., Kleinsteuber, S., Harms, H., Centler, F. (2019):
Determination of microbial maintenance in acetogenesis and methanogenesis by experimental and modeling techniques
Front. Microbiol. 10 , art. 166 10.3389/fmicb.2019.00166
Borsetto, C., Amos, G.C.A., Nunes da Rocha, U., Mitchell, A.L., Finn, R.D., Laidi, R.F., Vallin, C., Pearce, D.A., Newsham, K.K., Wellington, E.M.H. (2019):
Microbial community drivers of PK/NRP gene diversity in selected global soils
Microbiome 7 , art. 78 10.1186/s40168-019-0692-8
Calabrese, F., Voloshynovska, I., Musat, F., Thullner, M., Schlömann, M., Richnow, H.H., Lambrecht, J., Müller, S., Wick, L.Y., Musat, N., Stryhanyuk, H. (2019):
Quantitation and comparison of phenotypic heterogeneity among single cells of monoclonal microbial populations
Front. Microbiol. 10 , art. 2814 10.3389/fmicb.2019.02814
Chen, S.-C., Musat, N., Lechtenfeld, O.J., Paschke, H., Schmidt, M., Said, N., Popp, D., Calabrese, F., Stryhanyuk, H., Jaekel, U., Zhu, Y.-G., Joye, S.B., Richnow, H.-H., Widdel, F., Musat, F. (2019):
Anaerobic oxidation of ethane by archaea from a marine hydrocarbon seep
Nature 568 (7750), 108 - 111 10.1038/s41586-019-1063-0
Chowdhury, R., Ghosh, S., Manna, D., Das, S., Dutta, S., Kleinsteuber, S., Sträuber, H., Hassan, M.K., Kuittinen, S., Pappinen, A. (2019):
Hybridization of sugar-carboxylate-syngas platforms for the production of bio-alcohols from lignocellulosic biomass (LCB) – A state-of-the-art review and recommendations
Energy Conv. Manag. 200 , art. 112111 10.1016/j.enconman.2019.112111
Cohen, Y., Pasternak, Z., Johnke, J., Abed‐Rabbo, A., Kushmaro, A., Chatzinotas, A., Jurkevitch, E. (2019):
Bacteria and micro‐eukaryotes are differentially segregated in sympatric wastewater microhabitats
Environ. Microbiol. 21 (5), 1757 - 1770 10.1111/1462-2920.14548
Cossarizza, A., Chang, H.-D., Radbruch, A., Acs, A., Adam, D., Adam-Klages, S., Müller, S., Agace, W.W., et al. (2019):
Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition)
Eur. J. Immunol. 49 (10), 1457 - 1973 10.1002/eji.201970107
Czechowska, K., Lannigan, J., Wang, L., Arcidiacono, J., Ashhurst, T.M., Barnard, R.M., Bauer, S., Bispo, C., Bonilla, D.L., Brinkman, R.R., Cabanski, M., Chang, H.-D., Chakrabarti, L., Chojnowski, G., Cotleur, B., Degheidy, H., Dela Cruz, G.V., Eck, S., Elliott, J., Errington, R., Filby, A., Gagnon, D., Gardner, R., Green, C., Gregory, M., Groves, C.J., Hall, C., Hammes, F., Hedrick, M., Hoffman, R., Icha, J., Ivaska, J., Jenner, D.C., Jones, D., Kerckhof, F.M., Kukat, C., Lanham, D., Leavesley, S., Lee, M., Lin‐Gibson, S., Litwin, V., Liu, Y., Molloy, J., Moore, J.S., Müller, S., Nedbal, J., Niesner, R., Nitta, N., Ohlsson‐Wilhelm, B., Paul, N.E., Perfetto, S., Portat, Z., Props, R., Radtke, S., Rayanki, R., Rieger, A., Rogers, S., Rubbens, P., Salomon, R., Schiemann, M., Sharpe, J., Sonder, S.U., Stewart, J.J., Sun, Y., Ulrich, H., Van Isterdael, G., Vitaliti, A., van Vreden, C., Weber, M., Zimmermann, J., Vacca, G., Wallace, P., Tárnok, A. (2019):
Cyt‐Geist: Current and Future Challenges in Cytometry: Reports of the CYTO 2018 Conference Workshops
Cytom. Part A 95 (6), 598 - 644 10.1002/cyto.a.23777
Dias, O., Saraiva, J., Faria, C., Ramirez, M., Pinto, F., Rocha, I. (2019):
iDS372, a phenotypically reconciled model for the metabolism of Streptococcus pneumoniae strain R6
Front. Microbiol. 10 , art. 1283 10.3389/fmicb.2019.01283
Donnenberg, V.S., Müller, S., Houston, J.P., Holden, E. (2019):
Cytometry score: 23 to 4
Cytom. Part A 95 (3), 259 - 260 10.1002/cyto.a.23713
Engel, C., Schattenberg, F., Dohnt, K., Schröder, U., Müller, S., Krull, R. (2019):
Long-term behavior of defined mixed cultures of Geobacter sulfurreducens and Shewanella oneidensis in bioelectrochemical systems
Front. Bioeng. Biotechnol. 7 , art. 60 10.3389/fbioe.2019.00060
Fricke, C., Harms, H., Maskow, T. (2019):
Rapid calorimetric detection of bacterial contamination: Influence of the cultivation technique
Front. Microbiol. 10 , art. 2530 10.3389/fmicb.2019.02530
Ghanem, N., Stanley, C.E., Harms, H., Chatzinotas, A., Wick, L.Y. (2019):
Mycelial effects on phage retention during transport in a microfluidic platform
Environ. Sci. Technol. 53 (20), 11755 - 11763 10.1021/acs.est.9b03502
Guo, Y., Cichocki, N., Schattenberg, F., Geffers, R., Harms, H., Müller, S. (2019):
AgNPs change microbial community structures of wastewater
Front. Microbiol. 9 , art. 3211 10.3389/fmicb.2018.03211
Harnisch, F., Schröder, U. (2019):
Tapping renewables: a new dawn for organic electrosynthesis in aqueous reaction media
ChemElectroChem 6 (16), 4126 - 4133 10.1002/celc.201900456
Hegner, R., Neubert, K., Rosa, L.F.M., Harnisch, F. (2019):
Engineering electrochemical CO₂ reduction to formate under bioprocess‐compatible conditions to bioreactor scale
ChemElectroChem 6 (14), 3731 - 3735 10.1002/celc.201900526
Hofmann, P., Chatzinotas, A., Harpole, W.S., Dunker, S. (2019):
Temperature and stoichiometric dependence of phytoplankton traits
Ecology 100 (12), e02875 10.1002/ecy.2875
Hübner, T., Herrmann, A., Kretzschmar, J., Harnisch, F. (2019):
Suitability of fecal sludge from composting toilets as feedstock for carbonization
Journal of Water, Sanitation and Hygiene for Development 9 (4), 616 - 626 10.2166/washdev.2019.047
Janke, L., Weinrich, S., Leite, A.F., Sträuber, H., Nikolausz, M., Nelles, M. (2019):
Pre-treatment of filter cake for anaerobic digestion in sugarcane biorefineries: Assessment of batch versus semi-continuous experiments
Renew. Energy 143 , 1416 - 1426 10.1016/j.renene.2019.05.029
Kallies, R., Hölzer, M., Brizola Toscan, R., Nunes da Rocha, U., Anders, J., Marz, M., Chatzinotas, A. (2019):
Evaluation of sequencing library preparation protocols for viral metagenomic analysis from pristine aquifer groundwaters
Viruses 11 (6), art. 484 10.3390/v11060484
Kallies, R., Kiesel, B., Schmidt, M., Ghanem, N., Zopfi, J., Hackermüller, J., Harms, H., Wick, L.Y., Chatzinotas, A. (2019):
Complete genome sequence of Pseudoalteromonas virus vB_PspP-H6/1 that infects Pseudoalteromonas sp. strain H6
Mar. Genom. 47 , art. 100667 10.1016/j.margen.2019.03.002
Karimi, E., Keller-Costa, T., Slaby, B.M., Cox, C.J., Nunes da Rocha, U., Hentschel, U., Costa, R. (2019):
Genomic blueprints of sponge-prokaryote symbiosis are shared by low abundant and cultivatable Alphaproteobacteria
Sci. Rep. 9 , art. 1999 10.1038/s41598-019-38737-x
Kleinsteuber, S., Rohwerder, T., Lohse, U., Seiwert, B., Reemtsma, T. (2019):
Sated by a zero-calorie sweetener: Wastewater bacteria can feed on acesulfame
Front. Microbiol. 10 , art. 2606 10.3389/fmicb.2019.02606
Klünemann, T., Preuß, A., Adamczack, J., Rosa, L.F.M., Harnisch, F., Layer, G., Blankenfeldt, W. (2019):
Crystal structure of dihydro-heme d₁ dehydrogenase NirN from Pseudomonas aeruginosa reveals amino acid residues essential for catalysis
J. Mol. Biol. 431 (17), 3246 - 3260 10.1016/j.jmb.2019.05.046
Koch, C., Huber, K.J., Bunk, B., Overmann, J., Harnisch, F. (2019):
Trophic networks improve the performance of microbial anodes treating wastewater
npj Biofilms Microbiomes 5 , art. 27 10.1038/s41522-019-0100-y
König, S., Köhnke, M.C., Firle, A.-L., Banitz, T., Centler, F., Frank, K., Thullner, M. (2019):
Disturbance size can be compensated for by spatial fragmentation in soil microbial ecosystems
Front. Ecol. Evol. 7 , art. 290 10.3389/fevo.2019.00290
Koók, L., Bakonyi, P., Harnisch, F., Kretzschmar, J., Chae, K.-J., Zhen, G., Kumar, G., Rózsenberszki, T., Tóth, G., Nemestóthy, N., Bélafi-Bakó, K. (2019):
Biofouling of membranes in microbial electrochemical technologies: Causes, characterization methods and mitigation strategies
Bioresour. Technol. 279 , 327 - 338 10.1016/j.biortech.2019.02.001
Korth, B., Harnisch, F. (2019):
Corrigendum: Spotlight on the energy harvest of electroactive microorganisms: The impact of the applied anode potential
Front. Microbiol. 10 , art. 2744 10.3389/fmicb.2019.02744
Korth, B., Harnisch, F. (2019):
Spotlight on the energy harvest of electroactive microorganisms: The impact of the applied anode potential
Front. Microbiol. 10 , art. 1352 10.3389/fmicb.2019.01352
Lambrecht, J., Cichocki, N., Schattenberg, F., Kleinsteuber, S., Harms, H., Müller, S., Sträuber, H. (2019):
Key sub‑community dynamics of medium‑chain carboxylate production
Microb. Cell. Fact. 18 , art. 92 10.1186/s12934-019-1143-8
Lian, S., Wu, L., Nikolausz, M., Lechtenfeld, O.J., Richnow, H.H. (2019):
²H and ¹³C isotope fractionation analysis of organophosphorus compounds for characterizing transformation reactions in biogas slurry: Potential for anaerobic treatment of contaminated biomass
Water Res. 163 , art. 114882 10.1016/j.watres.2019.114882
Liu, Z., Cichocki, N., Hübschmann, T., Süring, C., Ofiţeru, I.D., Sloan, W.T., Grimm, V., Müller, S. (2019):
Neutral mechanisms and niche differentiation in steady-state insular microbial communities revealed by single cell analysis
Environ. Microbiol. 21 (1), 164 - 181 10.1111/1462-2920.14437
Ludwig, J., Höner zu Siederdissen, C., Liu, Z., Stadler, P.F., Müller, S. (2019):
flowEMMi: an automated model-based clustering tool for microbial cytometric data
BMC Bioinformatics 20 , art. 643 10.1186/s12859-019-3152-3
Lv, Z., Leite, A.F., Harms, H., Glaser, K., Liebetrau, J., Kleinsteuber, S., Nikolausz, M. (2019):
Microbial community shifts in biogas reactors upon complete or partial ammonia inhibition
Appl. Microbiol. Biotechnol. 103 (1), 519 - 533 10.1007/s00253-018-9444-0
Maskow, T., Rothe, A., Jakob, T., Paufler, S., Wilhelm, C. (2019):
Photocalorespirometry (Photo-CR): A novel method for access to photosynthetic energy conversion efficiency

Sci. Rep. 9 , art. 9298 10.1038/s41598-019-45296-8
Matz, B., Kupfer, B., Kallies, R., Külshammer, M., Flötenmeyer, M., Kreil, T.R., Eis-Hübinger, A.M. (2019):
Secondary structure of DNA released from purified capsids of human parvovirus B19 under moderate denaturing conditions
J. Gen. Virol. 100 (5), 812 - 827 10.1099/jgv.0.001253
Mayr, J.C., Grosch, J.-H., Hartmann, L., Rosa, L.F.M., Spiess, A.C., Harnisch, F. (2019):
Resting Escherichia coli as chassis for microbial electrosynthesis: production of chiral alcohols
ChemSusChem 12 (8), 1631 - 1634 10.1002/cssc.201900413
Mayr, J.C., Grosch, J.-H., Hartmann, L., Rosa, L.F.M., Spiess, A.C., Harnisch, F. (2019):
Front cover: Resting Escherichia coli as chassis for microbial electrosynthesis: production of chiral alcohols (ChemSusChem 8/2019)
ChemSusChem 12 (8), 1478, 1482 10.1002/cssc.201900931
Meng, X., Liu, B., Zhang, H., Wu, J., Yuan, X., Cui, Z. (2019):
Co-composting of the biogas residues and spent mushroom substrate: Physicochemical properties and maturity assessment
Bioresour. Technol. 276 , 281 - 287 10.1016/j.biortech.2018.12.097
Richert, I., Yager, P.L., Dinasquet, J., Logares, R., Riemann, L., Wendeberg, A., Bertilsson, S., Scofield, D.G. (2019):
Summer comes to the Southern Ocean: how phytoplankton shape bacterioplankton communities far into the deep dark sea
Ecosphere 10 (3), e02641 10.1002/ecs2.2641
Rosa, L.F.M., Hunger, S., Zschernitz, T., Strehlitz, B., Harnisch, F. (2019):
Integrating electrochemistry into bioreactors: effect of the upgrade kit on mass transfer, mixing time and sterilizability
Front. Energy Res. 7 , art. 98 10.3389/fenrg.2019.00098
Rosado, P.M., Leite, D.C.A., Duarte, G.A.S., Chaloub, R.M., Jospin, G., Nunes da Rocha, U., Saraiva, J.P., Dini-Andreote, F., Eisen, J.A., Bourne, D.G., Peixoto, R.S. (2019):
Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation
ISME J. 13 (4), 921 - 936 10.1038/s41396-018-0323-6
Schäpe, S.S., Krause, J.L., Engelmann, B., Fritz-Wallace, K., Schattenberg, F., Liu, Z., Müller, S., Jehmlich, N., Rolle-Kampczyk, U., Herberth, G., von Bergen, M. (2019):
The simplified human intestinal microbiota (SIHUMIx) shows high structural and functional resistance against changing transit times in in vitro bioreactors
Microorganisms 7 (12), art. 641 10.3390/microorganisms7120641
Schmidt, R., Ulanova, D., Wick, L.Y., Bode, H.B., Garbeva, P. (2019):
Microbe-driven chemical ecology: past, present and future
ISME J. 13 (11), 2656 - 2663 10.1038/s41396-019-0469-x
Schultz, J., Kallies, R., Nunes da Rocha, U., Rosado, A.S. (2019):
Draft genome sequence of Brevibacillus sp. Strain LEMMJ03, isolated from an Antarctic volcano
Microbiol. Resour. Ann. 8 (40), e00921-19 10.1128/mra.00921-19
Schwab, L., Rago, L., Koch, C., Harnisch, F. (2019):
Identification of Clostridium cochlearium as an electroactive microorganism from the mouse gut microbiome
Bioelectrochemistry 130 , art. 107334 10.1016/j.bioelechem.2019.107334
Sendek, A., Karakoç, C., Wagg, C., Domínguez-Begines, J., Martucci do Couto, G., van der Heijden, M.G.A., Naz, A.A., Lochner, A., Chatzinotas, A., Klotz, S., Gómez-Aparicio, L., Eisenhauer, N. (2019):
Drought modulates interactions between arbuscular mycorrhizal fungal diversity and barley genotype diversity
Sci. Rep. 9 , art. 9650 10.1038/s41598-019-45702-1
Vásquez Piñeros, M.A., Martínez-Lavanchy, P.M., Schmidt, K., Mardones, M., Heipieper, H.J. (2019):
Changes in bacterial diversity and catabolic gene abundance during the removal of dimethylphenol isomers in laboratory scale constructed wetlands
Appl. Microbiol. Biotechnol. 103 (1), 505 - 517 10.1007/s00253-018-9479-2
Weinrich, S., Koch, S., Bonk, F., Popp, D., Benndorf, D., Klamt, S., Centler, F. (2019):
Augmenting biogas process modeling by resolving intracellular metabolic activity
Front. Microbiol. 10 , art. 1095 10.3389/fmicb.2019.01095
Wieczorek, A.S., Schmidt, O., Chatzinotas, A., von Bergen, M., Gorissen, A., Kolb, S. (2019):
Ecological functions of agricultural soil bacteria and microeukaryotes in chitin degradation: A case study
Front. Microbiol. 10 , art. 1293 10.3389/fmicb.2019.01293
Witkowski, P.T., Drexler, J.F., Kallies, R., Ličková, M., Bokorová, S., Maganga, G.D., Szemes, T., Leroy, E.M., Krüger, D.H., Drosten, C., Klempa, B. (2019):
Corrigendum to “Phylogenetic analysis of a newfound bat-borne hantavirus supports a Laurasiatherian host association for ancestral mammalian hantaviruses” [Infect. Genet. Evol. 41 (2016) 113–119]
Infect. Genet. Evol. 67 , 245 10.1016/j.meegid.2018.02.033
Worrich, A., Musat, N., Harms, H. (2019):
Associational effects in the microbial neighborhood
ISME J. 13 (9), 2143 - 2149 10.1038/s41396-019-0444-6
Zahn, M., Kurteva-Yaneva, N., Schuster, J., Krug, U., Georgi, T., Müller, R.H., Rohwerder, T., Sträter, N. (2019):
Structures of 2-Hydroxyisobutyric Acid-CoA ligase reveal determinants of substrate specificity and describe a multi-conformational catalytic cycle
J. Mol. Biol. 431 (15), 2747 - 2761 10.1016/j.jmb.2019.05.027
Ziganshin, A.M., Wintsche, B., Seifert, J., Carstensen, M., Born, J., Kleinsteuber, S. (2019):
Spatial separation of metabolic stages in a tube anaerobic baffled reactor: reactor performance and microbial community dynamics
Appl. Microbiol. Biotechnol. 103 (9), 3915 - 3929 10.1007/s00253-019-09767-2

to index

2018 (64)

Atashgahi, S., Hornung, B., van der Waals, M.J., Nunes da Rocha, U., Hugenholtz, F., Nijsse, B., Molenaar, D., van Spanning, R., Stams, A.J.M., Gerritse, J., Smidt, H. (2018):
A benzene-degrading nitrate-reducing microbial consortium displays aerobic and anaerobic benzene degradation pathways
Sci. Rep. 8 , art. 4490 10.1038/s41598-018-22617-x
Aulenta, F., Puig, S., Harnisch, F. (2018):
Microbial electrochemical technologies: maturing but not mature. Editorial
Microb. Biotechnol. 11 (1), 18 - 19 10.1111/1751-7915.13045
Becher, E., Heese, A., Claußen, L., Eisen, S., Jehmlich, N., Rohwerder, T., Purswani, J. (2018):
Active site alanine preceding catalytic cysteine determines unique substrate specificity in bacterial CoA‐acylating prenal dehydrogenase
FEBS Lett. 592 (7), 1150 - 1160 10.1002/1873-3468.13019
Bonk, F., Popp, D., Harms, H., Centler, F. (2018):
PCR-based quantification of taxa-specific abundances in microbial communities: Quantifying and avoiding common pitfalls
J. Microbiol. Methods 153 , 139 - 147 10.1016/j.mimet.2018.09.015
Bonk, F., Popp, D., Weinrich, S., Sträuber, H., Kleinsteuber, S., Harms, H., Centler, F. (2018):
Ammonia inhibition of anaerobic volatile fatty acid degrading microbial communities
Front. Microbiol. 9 , art. 2921 10.3389/fmicb.2018.02921
Bonk, F., Popp, D., Weinrich, S., Sträuber, H., Kleinsteuber, S., Harms, H., Centler, F. (2018):
Intermittent fasting for microbes: how discontinuous feeding increases functional stability in anaerobic digestion
Biotechnol. Biofuels 11 , art. 274 10.1186/s13068-018-1279-5
Broekgaarden, C., Pelgrom, K.T.B., Bucher, J., van Dam, N.M., Grosser, K., Pieterse, C.M.J., van Kaauwen, M., Steenhuis, G., Voorrips, R.E., de Vos, M., Vosman, B., Worrich, A., van Wees, S.C.M. (2018):
Combining QTL mapping with transcriptome and metabolome profiling reveals a possible role for ABA signaling in resistance against the cabbage whitefly in cabbage
PLOS One 13 (11), e0206103 10.1371/journal.pone.0206103
Concha, E., Heipieper, H.J., Wick, L.Y., Ciudad, G.A., Navia, R. (2018):
Effects of limonene, n-decane and n-decanol on growth and membrane fatty acid composition of the microalga Botryococcus braunii
AMB Express 8 (1), art. 189 10.1186/s13568-018-0718-9
Deveau, A., Bonito, G., Uehling, J., Paoletti, M., Becker, M., Bindschedler, S., Hacquard, S., Hervé, V., Labbé, J., Lastovetsky, O.A., Mieszkin, S., Millet, L.J., Vajna, B., Junier, P., Bonfante, P., Krom, B.P., Olsson, S., van Elsas, J.D., Wick, L.Y. (2018):
Bacterial–fungal interactions: ecology, mechanisms and challenges
FEMS Microbiol. Rev. 42 (3), 335 - 352 10.1093/femsre/fuy008
Fiedler, D., Maskow, T. (2018):
A note of thanks from the guest editors to Professor Wolfgang Babel – An inspiring researcher and highly esteemed teacher
Eng. Life Sci. 18 (7), 412 - 413 10.1002/elsc.201800092
Ghanem, N., Trost, M., Sanchez Fontanet, L., Harms, H., Chatzinotas, A., Wick, L.Y. (2018):
Changes of the specific infectivity of tracer phages during transport in porous media
Environ. Sci. Technol. 52 (6), 3486 - 3492 10.1021/acs.est.7b06271
Grobbler, C., Virdis, B., Nouwens, A., Harnisch, F., Rabaey, K., Bond, P.L. (2018):
Effect of the anode potential on the physiology and proteome of Shewanella oneidensis MR-1
Bioelectrochemistry 119 , 172 - 179 10.1016/j.bioelechem.2017.10.001
Günther, S., Becker, D., Hübschmann, T., Reinert, S., Kleinsteuber, S., Müller, S., Wilhelm, C. (2018):
Long-term biogas production from glycolate by diverse and highly dynamic communities
Microorganisms 6 (4), art. 130 10.3390/microorganisms6040103
Günther, S., Grunert, M., Müller, S. (2018):
Overview of recent advances in phosphorus recovery for fertilizer production
Eng. Life Sci. 18 (7), 434 - 439 10.1002/elsc.201700171
Harnisch, F., Urban, C. (2018):
Electrobiorefineries: Unlocking the synergy of electrochemical and microbial conversions
Angew. Chem.-Int. Edit. 57 (32), 10016 - 10023 10.1002/anie.201711727
Hegner, R., Rosa, L.F.M., Harnisch, F. (2018):
Electrochemical CO₂ reduction to formate at indium electrodes with high efficiency and selectivity in pH neutral electrolytes
Appl. Catal. B-Environ. 238 , 546 - 556 10.1016/j.apcatb.2018.07.030
Hofmann, U., Fenu, A., Beffa, T., Beimfohr, C., Weemaes, M., Yu, L., Schrader, S., Moeder, M., Schlosser, D. (2018):
Evaluation of the applicability of the aquatic ascomycete Phoma sp. UHH 5‐1‐03 for the removal of pharmaceutically active compounds from municipal wastewaters using membrane bioreactors
Eng. Life Sci. 18 (7), 510 - 519 10.1002/elsc.201800070
Jahangiri, E., Thomas, I., Schulze, A., Seiwert, B., Cabana, H., Schlosser, D. (2018):
Characterisation of electron beam irradiation-immobilised laccase for application in wastewater treatment
Sci. Total Environ. 624 , 309 - 322 10.1016/j.scitotenv.2017.12.127
Janke, L., Weinrich, S., Leite, A.F., Sträuber, H., Radetski, C.M., Nikolausz, M., Nelles, M., Stinner, W. (2018):
Year-round biogas production in sugarcane biorefineries: Process stability, optimization and performance of a two-stage reactor system
Energy Conv. Manag. 168 , 188 - 199 10.1016/j.enconman.2018.04.101
Jimenez-Sanchez, C., Wick, L.Y., Ortega-Calvo, J.-J. (2018):
Impact of chemoeffectors on bacterial motility, transport, and contaminant degradation in sand-filled percolation columns
Environ. Sci. Technol. 52 (18), 10673 - 10679 10.1021/acs.est.8b02370
Kahl, S., Kleinsteuber, S., Nivala, J., van Afferden, M., Reemtsma, T. (2018):
Emerging biodegradation of the previously persistent artificial sweetener acesulfame in biological wastewater treatment
Environ. Sci. Technol. 55 (5), 2717 - 2725 10.1021/acs.est.7b05619
Karakoç, C., Radchuk, V., Harms, H., Chatzinotas, A. (2018):
Interactions between predation and disturbances shape prey communities
Sci. Rep. 8 , art. 2968 10.1038/s41598-018-21219-x
Karaoz, U., Couradeau, E., Nunes da Rocha, U., Lim, H.-C., Northen, T., Garcia-Pichel, F., Brodie, E.L. (2018):
Large blooms of Bacillales (Firmicutes) underlie the response to wetting of cyanobacterial biocrusts at various stages of maturity
mBio 9 (2), e01366-16 10.1128/mBio.01366-16
Keller, A.H., Kleinsteuber, S., Vogt, C. (2018):
Anaerobic benzene mineralization by nitrate-reducing and sulfate-reducing microbial consortia enriched
from the same site: comparison of community composition and degradation characteristics
Microb. Ecol. 75 (4), 941 - 953 10.1007/s00248-017-1100-1
Keller, A.H., Kleinsteuber, S., Vogt, C. (2018):
Correction to: Anaerobic benzene mineralization by nitrate-reducing and sulfate-reducing microbial consortia enriched from the same site: comparison of community composition and degradation characteristics (vol 75, pg 941, 2017)
Microb. Ecol. 75 (4), 954 - 954 10.1007/s00248-017-1111-y
Khan, A.M., Wick, L.Y., Thullner, M. (2018):
Applying the Rayleigh approach for stable isotope-based analysis of VOC biodegradation in diffusion-dominated systems
Environ. Sci. Technol. 52 (14), 7785 - 7795 10.1021/acs.est.8b01757
Koch, C., Korth, B., Harnisch, F. (2018):
Microbial ecology-based engineering of Microbial Electrochemical Technologies
Microb. Biotechnol. 11 (1), 22 - 38 10.1111/1751-7915.12802
Koch, C., Müller, S. (2018):
Personalized microbiome dynamics – Cytometric fingerprints for routine diagnostics
Mol. Asp. Med. 59 , 123 - 134 10.1016/j.mam.2017.06.005
König, S., Worrich, A., Banitz, T., Centler, F., Harms, H., Kästner, M., Miltner, A., Wick, L.Y., Thullner, M., Frank, K. (2018):
Spatiotemporal disturbance characteristics determine functional stability and collapse risk of simulated microbial ecosystems
Sci. Rep. 8 , art. 9488 10.1038/s41598-018-27785-4
König, S., Worrich, A., Banitz, T., Harms, H., Kästner, M., Miltner, A., Wick, L.Y., Frank, K., Thullner, M., Centler, F. (2018):
Functional resistance to recurrent spatially heterogeneous disturbances is facilitated by increased activity of surviving bacteria in a virtual ecosystem
Front. Microbiol. 9 , art. 734 10.3389/fmicb.2018.00734
Kretzschmar, J., Böhme, P., Liebetrau, J., Mertig, M., Harnisch, F. (2018):
Microbial electrochemical sensors for anaerobic digestion process control – performance of electroactive biofilms under real conditions
Chem. Eng. Technol. 41 (4), 687 - 695 10.1002/ceat.201700539
Krohn, S., Zeller, K., Böhm, S., Chatzinotas, A., Harms, H., Hartmann, I., Heidtmann, A., Herber, A., Kaiser, T., Treuheit, M., Hoffmeister, A., Berg, T., Engelmann, C. (2018):
Molecular quantification and differentiation of Candida species in biological specimens of patients with liver cirrhosis
PLOS One 13 (6), e0197319 10.1371/journal.pone.0197319
Kuppardt, A., Fester, T., Härtig, C., Chatzinotas, A. (2018):
Rhizosphere protists change metabolite profiles in Zea mays
Front. Microbiol. 9 , art. 857 10.3389/fmicb.2018.00857
Lambrecht, J., Schattenberg, F., Harms, H., Müller, S. (2018):
Characterizing microbiome dynamics – flow cytometry based workflows from pure cultures to natural communities
J. Vis. Exp. 2018 (137), e58033 10.3791/58033
Lechner, U., Türkowsky, D., Dinh, T.T.H., Al-Fathi, H., Schwoch, S., Franke, S., Gerlach, M.-S., Koch, M., von Bergen, M., Jehmlich, N., Dang, T.C.H. (2018):
Desulfitobacterium contributes to the microbial transformation of 2,4,5‐T by methanogenic enrichment cultures from a Vietnamese active landfill
Microb. Biotechnol. 11 (6), 1137 - 1156 10.1111/1751-7915.13301
Lian, S., Nikolausz, M., Nijenhuis, I., Leite, A.F., Richnow, H.H. (2018):
Biotransformation and inhibition effects of hexachlorocyclohexanes during biogas production from contaminated biomass characterized by isotope fractionation concepts
Bioresour. Technol. 250 , 683 - 690 10.1016/j.biortech.2017.11.076
Liu, Z., Cichocki, N., Bonk, F., Günther, S., Schattenberg, F., Harms, H., Centler, F., Müller, S. (2018):
Ecological stability properties of microbial communities assessed by flow cytometry
mSphere 3 (1), e00564-17 10.1128/mSphere.00564-17
Lv, Z., Jiang, J.H., Liebetrau, J., Richnow, H.H., Fischer, A., Ács, N., Nikolausz, M. (2018):
Ammonium chloride vs urea-induced ammonia inhibition of the biogas process assessed by stable isotope analysis
Chem. Eng. Technol. 41 (4), 671 - 679 10.1002/ceat.201700482
Meng, X., Liu, B., Xi, C., Luo, X., Yuan, X., Wang, X., Zhu, W., Wang, H., Cui, Z. (2018):
Effect of pig manure on the chemical composition and microbial diversity during co-composting with spent mushroom substrate and rice husks
Bioresour. Technol. 251 , 22 - 30 10.1016/j.biortech.2017.09.077
Newcomer, M.E., Hubbard, S.S., Fleckenstein, J.H., Maier, U., Schmidt, C., Thullner, M., Ulrich, C., Flipo, F., Rubin, Y. (2018):
Influence of hydrological perturbations and riverbed sediment characteristics on hyporheic zone respiration of CO₂ and N₂
J. Geophys. Res.-Biogeosci. 123 (3), 902 - 922 10.1002/2017JG004090
Ozbayram, E.G., Akyol, C., Ince, B., Karakoç, C., Ince, O. (2018):
Rumen bacteria at work: bioaugmentation strategies to enhance biogas production from cow manure
J. Appl. Microbiol. 124 (2), 491 - 502 10.1111/jam.13668
Ozbayram, E.G., Ince, O., Ince, B., Harms, H., Kleinsteuber, S. (2018):
Comparison of rumen and manure microbiomes and implications for the inoculation of anaerobic digesters
Microorganisms 6 (1), art. 15 10.3390/microorganisms6010015
Ozbayram, E.G., Kleinsteuber, S., Nikolausz, M., Ince, B., Ince, O. (2018):
Bioaugmentation of anaerobic digesters treating lignocellulosic feedstock by enriched microbial consortia
Eng. Life Sci. 18 (7), 440 - 446 10.1002/elsc.201700199
Ozbayram, E.G., Kleinsteuber, S., Nikolausz, M., Ince, B., Ince, O. (2018):
Enrichment of lignocellulose-degrading microbial communities from natural and engineered methanogenic environments
Appl. Microbiol. Biotechnol. 102 (2), 1035 - 1043 10.1007/s00253-017-8632-7
Peters, K., Worrich, A., Weinhold, A., Alka, O., Balcke, G., Birkemeyer, C., Bruelheide, H., Calf, O.W., Dietz, S., Dührkop, K., Gaquerel, E., Heinig, U., Kücklich, M., Macel, M., Müller, C., Poeschl, Y., Pohnert, G., Ristok, C., Rodríguez, V.M., Ruttkies, C., Schumann, M., Schweiger, R., Shahaf, N., Steinbeck, C., Tortosa, M., Treutler, H., Ueberschaar, N., Velasco, P., Weiß, B.M., Widdig, A., Neumann, S., van Dam, N.M. (2018):
Current challenges in plant eco-metabolomics
Int. J. Mol. Sci. 19 (5), art. 1385 10.3390/ijms19051385
Pons, S., Bindschedler, S., Sebag, D., Junier, P., Verrecchia, E., Cailleau, G. (2018):
Biocontrolled soil nutrient distribution under the influence of an oxalogenic-oxalotrophic ecosystem
Plant Soil 425 (1–2), 145 - 160 10.1007/s11104-018-3573-1
Pozdnyakova, N., Schlosser, D., Dubrovskaya, E., Balandina, S., Sigida, E., Grinev, V., Turkovskaya, O. (2018):
The degradative activity and adaptation potential of the litter-decomposing fungus Stropharia rugosoannulata
World J. Microbiol. Biotechnol. 34 , art. 133 10.1007/s11274-018-2516-6
Rodrigo Quejigo, J., Rosa, L.F.M., Harnisch, F. (2018):
Electrochemical characterization of bed electrodes using voltammetry of single granules
Electrochem. Commun. 90 , 78 - 82 10.1016/j.elecom.2018.04.009
Russel, M., Sophocleous, M., JiaJia, S., Xu, W., Xiao, L., Maskow, T., Alam, M., Georgiou, J. (2018):
High-frequency, dielectric spectroscopy for the detection of electrophysiological/biophysical differences in different bacteria types and concentrations
Anal. Chim. Acta 1028 , 86 - 95 10.1016/j.aca.2018.04.045
Schmeller, D.S., Loyau, A., Bao, D., Brack, W., Chatzinotas, A., De Vleeschouwer, F., Friesen, J., Gandois, L., Hansson, S.V., Haver, M., Le Roux, G., Shen, J., Teisserenc, R., Vredenburg, V.T. (2018):
People, pollution and pathogens – Global change impacts in mountain freshwater ecosystems
Sci. Total Environ. 622-623 , 756 - 763 10.1016/j.scitotenv.2017.12.006
Schmidt, S.I., Kreft, J.-U., Mackay, R., Picioreanu, C., Thullner, M. (2018):
Elucidating the impact of micro-scale heterogeneous bacterial distribution on biodegradation
Adv. Water Resour. 116 , 67 - 76 10.1016/j.advwatres.2018.01.013
Shan, Y., Harms, H., Wick, L.Y. (2018):
Electric field effects on bacterial deposition and transport in porous media
Environ. Sci. Technol. 52 (24), 14294 - 14301 10.1021/acs.est.8b03648
Sharma, A., Schmidt, M., Kiesel, B., Mahato, N.K., Cralle, L., Singh, Y., Richnow, H.H., Gilbert, J.A., Arnold, W., Lal, R. (2018):
Bacterial and archaeal viruses of Himalayan hot springs at Manikaran modulate host genomes
Front. Microbiol. 9 , art. 3095 10.3389/fmicb.2018.03095
Sträuber, H., Bühligen, F., Kleinsteuber, S., Dittrich‐Zechendorf, M. (2018):
Carboxylic acid production from ensiled crops in anaerobic solid‐state fermentation ‐ trace elements as pH controlling agents support microbial chain elongation with lactic acid
Eng. Life Sci. 18 (7), 447 - 458 10.1002/elsc.201700186
van Gelder, S., Röhrig, N., Schattenberg, F., Cichocki, N., Schumann, J., Schmalz, G., Haak, R., Ziebolz, D., Müller, S. (2018):
A cytometric approach to follow variation and dynamics of the salivary microbiota
Methods 134–135 , 67 - 79 10.1016/j.ymeth.2017.08.009
Vásquez-Piñeros, M.A., Martínez-Lavanchy, P.M., Jehmlich, N., Pieper, D.H., Rincón, C.A., Harms, H., Junca, H., Heipieper, H.J. (2018):
Delftia sp. LCW, a strain isolated from a constructed wetland shows novel properties for dimethylphenol isomers degradation
BMC Microbiol. 18 , art. 108 10.1186/s12866-018-1255-z
Vilajeliu-Pons, A., Koch, C., Balaguer, M.D., Colprim, J., Harnisch, F., Puig, S. (2018):
Microbial electricity driven anoxic ammonium removal
Water Res. 130 , 168 - 175 10.1016/j.watres.2017.11.059
Wintsche, B., Jehmlich, N., Popp, D., Harms, H., Kleinsteuber, S. (2018):
Metabolic adaptation of methanogens in anaerobic digesters upon trace element limitation
Front. Microbiol. 9 , art. 405 10.3389/fmicb.2018.00405
Xu, J., He, H., Wang, Y.-Y., Yan, R., Zhou, L.-J., Liu, Y., Jiang, F.-L., Maskow, T., Liu, Y. (2018):
New aspects of the environmental risks of quantum dots: prophage activation
Environ. Sci.-Nano 5 (7), 1556 - 1566 10.1039/c8en00142a
Xu, J., Jiang, F.-L., Liu, Y., Kiesel, B., Maskow, T. (2018):
An enhanced bioindicator for calorimetric monitoring of prophage-activating chemicals in the trace concentration range
Eng. Life Sci. 18 (7), 475 - 483 10.1002/elsc.201800026
Xu, J., Kiesel, B., Kallies, R., Jiang, F.-L., Liu, Y., Maskow, T. (2018):
A fast and reliable method for monitoring of prophage-activating chemicals
Microb. Biotechnol. 11 (6), 1112 - 1120 10.1111/1751-7915.13042
Ye, F., Ma, M.-H., Op den Camp, H.J.M., Chatzinotas, A., Li, L., Lv, M.-Q., Wu, S.-J., Wang, Y. (2018):
Different recovery processes of soil ammonia oxidizers from flooding disturbance
Microb. Ecol. 76 (4), 1041 - 1052 10.1007/s00248-018-1183-3
Zhalnina, K., Louie, K.B., Hao, Z., Mansoori, N., Nunes da Rocha, U., Shi, S., Cho, H., Karaoz, U., Loqué, D., Bowen, B.P., Firestone, M.K., Northen, T.R., Brodie, E.L. (2018):
Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly
Nat. Microbiol. 3 (4), 470 - 480 10.1038/s41564-018-0129-3
Zimmermann, J., Durek, P., Kühl, A.A., Schattenberg, F., Maschmeyer, P., Siracusa, F., Lehmann, K., Westendorf, K., Weber, M., Riedel, R., Müller, S., Radbruch, A., Chang, H.-D. (2018):
The intestinal microbiota determines the colitis-inducing potential of T-bet-deficient Th cells in mice
Eur. J. Immunol. 48 (1), 161 - 167 10.1002/eji.201747100

to index

2017 (56)

Altwasser, V., Pätz, R.R., Lemke, T., Paufler, S., Maskow, T. (2017):
A simple method for the measurement of metabolic heat production rates during solid-state fermentations using β-carotene production with Blakeslea trispora as a model system
Eng. Life Sci. 17 (6), 620 - 628 10.1002/elsc.201600208
Bock, C., Chatzinotas, A., Boenigk, J. (2017):
Genetic diversity in chrysophytes: Comparison of different gene markers
Fottea 17 (2), 209 - 221 10.5507/fot.2017.005
Bonk, F., Bastidas-Oyanedel, J.-R., Yousef, A.F., Schmidt, J.E. (2017):
Exploring the selective lactic acid production from food waste in uncontrolled pH mixed culture fermentations using different reactor configurations
Bioresour. Technol. 238 , 416 - 424 10.1016/j.biortech.2017.04.057
Brown, R.K., Schmidt, U.C., Harnisch, F., Schröder, U. (2017):
Combining hydrogen evolution and corrosion data - A case study on the economic viability of selected metal cathodes in microbial electrolysis cells
J. Power Sources 356 , 473 - 483 10.1016/j.jpowsour.2017.01.076
Cossarizza, A., Chang, H.-D., Radbruch, A., Akdis, M., Andrä, I., Annunziato, F., Bacher, P., Barnaba, V., Battistini, L., Bauer, W.M., Baumgart, S., Becher, B., Beisker, W., Berek, C., Blanco, A., Borsellino, G., Boulais, P.E., Brinkman, R.R., Büscher, M., Busch, D.H., Bushnell, T.P., Cao, X., Cavani, A., Chattopadhyay, P.K., Cheng, Q., Chow, S., Clerici, M., Cooke, A., Cosma, A., Cosmi, L., Cumano, A., Dang, V.D., Davies, D., De Biasi, S., Del Zotto, G., Müller, S., Müller, W., et al. (2017):
Guidelines for the use of flow cytometry and cell sorting in immunological studies
Eur. J. Immunol. 47 (10), 1584 - 1797 10.1002/eji.201646632
Cruz Viggi, C., Simonetti, S., Palma, E., Pagliaccia, P., Braguglia, C., Fazi, S., Baronti, S., Assunta Navarra, M., Pettiti, I., Koch, C., Harnisch, F., Aulenta, F. (2017):
Enhancing methane production from food waste fermentate using biochar: the added value of electrochemical testing in pre‑selecting the most effective type of biochar
Biotechnol. Biofuels 10 , art. 303 10.1186/s13068-017-0994-7
Dinasquet, J., Richert, I., Logares, R., Yager, P., Bertilsson, S., Riemann, L. (2017):
Mixing of water masses caused by a drifting iceberg affects bacterial activity, community composition and substrate utilization capability in the Southern Ocean
Environ. Microbiol. 19 (6), 2453 - 2467 10.1111/1462-2920.13769
Geisen, S., Mitchell, E.A.D., Wilkinson, D.M., Adl, S., Bonkowski, M., Brown, M.W., Fiore-Donno, A.M., Heger, T.J., Jassey, V.E.J., Krashevska, V., Lahr, D.J.G., Marcisz, K., Mulot, M., Payne, R., Singer, D., Anderson, O.R., Charman, D.J., Ekelund, F., Griffiths, B.S., Rønn, R., Smirnov, A., Bass, ´D., Belbahri, L., Berney, C., Blandenier, Q., Chatzinotas, A., Clarholm, M., Dunthorn, M., Feest, A., Fernández, L.D., Foissner, W., Fournier, B., Gentekaki, E., Hájek, M., Helder, J., Jousset, A., Koller, R., Kumar, S., La Terza, A., Lamentowicz, M., Mazei, Y., Santos, S.S., Seppey, C.V.W., Spiegel, F.W., Walochnik, J., Winding, A., Lara, E. (2017):
Soil protistology rebooted: 30 fundamental questions to start with
Soil Biol. Biochem. 111 , 94 - 103 10.1016/j.soilbio.2017.04.001
Gharasoo, M., Thullner, M., Elsner, M. (2017):
Introduction of a new platform for parameter estimation of kinetically complex environmental systems
Environ. Modell. Softw. 98 , 12 - 20 10.1016/j.envsoft.2017.09.005
Gimkiewicz, C., Hegner, R., Gutensohn, M., Koch, C., Harnisch, F. (2017):
Study of electrochemical reduction of CO₂ for future use in secondary microbial electrochemical technologies
ChemSusChem 10 (5), 958 - 967 10.1002/cssc.201601675
Guo, Y., Baumgart, S., Stärk, H.-J., Harms, H., Müller, S. (2017):
Mass cytometry for detection of silver at the bacterial single cell level
Front. Microbiol. 8 , art. 1326 10.3389/fmicb.2017.01326
Guo, Y., Stärk, H.J., Hause, G., Schmidt, M., Harms, H., Wick, L.Y., Müller, S. (2017):
Heterogenic response of prokaryotes toward silver nanoparticles and ions is facilitated by phenotypes and attachment of silver aggregates to cell surfaces
Cytom. Part A 91 (8), 775 - 784 10.1002/cyto.a.23055
Harnisch, F., Schmid, J. (2017):
Editorial to special issue of Engineering in Life Sciences Emerging biotechnologies viewed by emerging bioengineers (EBEB)
Eng. Life Sci. 17 (1), 4 - 5 10.1002/elsc.201600235
Hegner, R., Koch, C., Riechert, V., Harnisch, F. (2017):
Microbiome-based carboxylic acids production: from serum bottles to bioreactors
RSC Advances 7 (25), 15362 - 15371 10.1039/C6RA28259H
Hubalek, V., Buck, M., Tan, B., Foght, J., Wendeberg, A., Berry, D., Bertilsson, S., Eiler, A. (2017):
Vitamin and amino acid auxotrophy in anaerobic consortia operating under methanogenic conditions
mSystems 2 (5), e00038-17 10.1128/mSystems.00038-17
Inostroza, N.G., Barra, P.J., Wick, L.Y., Mora, M.L., Jorquera, M.A. (2017):
Effect of rhizobacterial consortia from undisturbed arid- and agro-ecosystems on wheat growth under different conditions
Lett. Appl. Microbiol. 64 (2), 158 - 163 10.1111/lam.12697
Jahangiri, E., Seiwert, B., Reemtsma, T., Schlosser, D. (2017):
Laccase- and electrochemically mediated conversion of triclosan: Metabolite formation and influence on antibacterial activity
Chemosphere 168 , 549 - 558 10.1016/j.chemosphere.2016.11.030
Janke, L., Weinrich, S., Leite, A.F., Schüch, A., Nikolausz, M., Nelles, M., Stinner, W. (2017):
Optimization of semi-continuous anaerobic digestion of sugarcane straw co-digested with filter cake: Effects of macronutrients supplementation on conversion kinetics
Bioresour. Technol. 245 , 35 - 43 10.1016/j.biortech.2017.08.084
Janke, L., Weinrich, S., Leite, A.F., Terzariol, F.K., Nikolausz, M., Nelles, M., Stinner, W. (2017):
Improving anaerobic digestion of sugarcane straw for methane production: combined benefits of mechanical and sodium hydroxide pretreatment for process designing
Energy Conv. Manag. 141 , 378 - 389 10.1016/j.enconman.2016.09.083
Johnke, J., Baron, M., Leeuw, M., Kushmaro, A., Jurkevitch, E., Harms, H., Chatzinotas, A. (2017):
A generalist protist predator enables coexistence in multitrophic predator-prey systems containing a phage and the bacterial predator Bdellovibrio
Front. Ecol. Evol. 5 , art. 124 10.3389/fevo.2017.00124
Johnke, J., Boenigk, J., Harms, H., Chatzinotas, A. (2017):
Killing the killer: predation between protists and predatory bacteria
FEMS Microbiol. Lett. 364 (9), fnx089 10.1093/femsle/fnx089
Jousset, A., Bienhold, C., Chatzinotas, A., Gallien, L., Gobet, A., Kurm, V., Küsel, K., Rillig, M.C., Rivett, D.W., Salles, J.F., van der Heijden, M.G.A., Youssef, N.H., Zhang, X., Wei, Z., Hol, W.H.G. (2017):
Where less may be more: how the rare biosphere pulls ecosystems strings
ISME J. 11 (4), 853 - 862 10.1038/ismej.2016.174
Kallies, R., Kiesel, B., Schmidt, M., Kacza, J., Ghanem, N., Narr, A., Zopfi, J., Wick, L.Y., Hackermüller, J., Harms, H., Chatzinotas, A. (2017):
Complete genome sequence of Pseudoalteromonas phage vB_PspS-H40/1 (formerly H40/1) that infects Pseudoalteromonas sp. strain H40 and is used as biological tracer in hydrological transport studies
Stand. Genomic Sci. 12 , art. 20 10.1186/s40793-017-0235-5
Karakoç, C., Singer, A., Johst, K., Harms, H., Chatzinotas, A. (2017):
Transient recovery dynamics of a predator–prey system under press and pulse disturbances
BMC Ecology 17 , art. 13 10.1186/s12898-017-0123-2
Kleinert, F., Kallies, R., Hort, M., Zweynert, A., Szekat, C., Nagel, M., Bierbaum, G. (2017):
Influence of IS256 on genome variability and formation of small-colony variants in Staphylococcus aureus
Antimicrob. Agents Chemother. 61 (8), e00144-17 10.1128/AAC.00144-17
Koch, C., Kuchenbuch, A., Kracke, F., Bernhardt, P.V., Krömer, J.O., Harnisch, F. (2017):
Predicting and experimental evaluating bio-electrochemical synthesis — A case study with Clostridium kluyveri
Bioelectrochemistry 118 , 114 - 122 10.1016/j.bioelechem.2017.07.009
König, S., Worrich, A., Centler, F., Wick, L.Y., Miltner, A., Kästner, M., Thullner, M., Frank, K., Banitz, T. (2017):
Modelling functional resilience of microbial ecosystems: Analysis of governing processes
Environ. Modell. Softw. 89 , 31 - 39 10.1016/j.envsoft.2016.11.025
Korth, B., Maskow, T., Günther, S., Harnisch, F. (2017):
Estimating the energy content of wastewater using combustion calorimetry and different drying processes
Front. Energy Res. 5 , art. 23 10.3389/fenrg.2017.00023
Kretzschmar, J., Koch, C., Liebetrau, J., Mertig, M., Harnisch, F. (2017):
Electroactive biofilms as sensor for volatile fatty acids: Cross sensitivity, response dynamics, latency and stability
Sens. Actuator B-Chem. 241 , 466 - 472 10.1016/j.snb.2016.10.097
Kretzschmar, J., Riedl, S., Brown, R.K., Schröder, U., Harnisch, F. (2017):
eLatrine: lessons learned from the development of a low-tech MFC based on cardboard electrodes for the treatment of human feces
J. Electrochem. Soc. 164 (3), H3065 - H3072 10.1149/2.0121703jes
Krueger, M.C., Seiwert, B., Prager, A., Zhang, S., Abel, B., Harms, H., Schlosser, D. (2017):
Degradation of polystyrene and selected analogues by biological Fenton chemistry approaches: opportunities and limitations
Chemosphere 173 , 520 - 528 10.1016/j.chemosphere.2017.01.089
Lambrecht, J., Cichocki, N., Hübschmann, T., Koch, C., Harms, H., Müller, S. (2017):
Flow cytometric quantification, sorting and sequencing of methanogenic archaea based on F₄₂₀ autofluorescence
Microb. Cell. Fact. 16 , art. 180 10.1186/s12934-017-0793-7
Liang, X., Guo, C., Liao, C., Liu, S., Wick, L.Y., Peng, D., Yi, X., Lu, G., Yin, H., Dang, Z. (2017):
Drivers and applications of integrated clean-up technologies for surfactant-enhanced remediation of environments contaminated with polycyclic aromatic hydrocarbons (PAHs)
Environ. Pollut. 225 , 129 - 140 10.1016/j.envpol.2017.03.045
Lucas, R., Groeneveld, J., Harms, H., Johst, K., Frank, K., Kleinsteuber, S. (2017):
A critical evaluation of ecological indices for the comparative analysis of microbial communities based on molecular datasets
FEMS Microbiol. Ecol. 93 (1), fiw209 10.1093/femsec/fiw209
Meyer-Cifuentes, I., Martinez-Lavanchy, P.M., Marin-Cevada, V., Böhnke, S., Harms, H., Müller, J.A., Heipieper, H.J. (2017):
Isolation and characterization of Magnetospirillum sp. strain 15-1 as a representative anaerobic toluene-degrader from a constructed wetland model
PLOS One 12 (4), e0174750 10.1371/journal.pone.0174750
Narr, A., Nawaz, A., Wick, L.Y., Harms, H., Chatzinotas, A. (2017):
Soil viral communities vary temporally and along a land use transect as revealed by virus-like particle counting and a modified community fingerprinting approach (fRAPD)
Front. Microbiol. 8 , art. 1975 10.3389/fmicb.2017.01975
Otto, S., Bruni, E.P., Harms, H., Wick, L.Y. (2017):
Catch me if you can: dispersal and foraging of Bdellovibrio bacteriovorus 109J along mycelia
ISME J. 11 (2), 386 - 393 10.1038/ismej.2016.135
Otto, S., Harms, H., Wick, L.Y. (2017):
Effects of predation and dispersal on bacterial abundance and contaminant biodegradation
FEMS Microbiol. Ecol. 93 (2), fiw241 10.1093/femsec/fiw241
Ozbayram, E.G., Kleinsteuber, S., Nikolausz, M., Ince, B., Ince, O. (2017):
Effect of bioaugmentation by cellulolytic bacteria enriched from sheep rumen on methane production from wheat straw
Anaerobe 46 , 122 - 130 10.1016/j.anaerobe.2017.03.013
Perruchon, C., Chatzinotas, A., Omirou, M., Vasileiadis, S., Menkissoglou-Spiroudi, U., Karpouzas, D.G. (2017):
Isolation of a bacterial consortium able to degrade the fungicide thiabendazole: the key role of a Sphingomonas phylotype
Appl. Microbiol. Biotechnol. 101 (9), 3881 - 3893 10.1007/s00253-017-8128-5
Pezzella, C., Macellaro, G., Sannia, G., Raganati, F., Olivieri, G., Marzocchella, A., Schlosser, D., Piscitelli, A. (2017):
Exploitation of Trametes versicolor for bioremediation of endocrine disrupting chemicals in bioreactors
PLOS One 12 (6), e0178758 10.1371/journal.pone.0178758
Popp, D., Plugge, C.M., Kleinsteuber, S., Harms, H., Sträuber, H. (2017):
Inhibitory effect of coumarin on syntrophic fatty acid-oxidizing and methanogenic cultures and biogas reactor microbiomes
Appl. Environ. Microb. 83 (13), e00438-17 10.1128/AEM.00438-17
Popp, D., von Gillhaussen, P., Weidlich, E.W.A., Sträuber, H., Harms, H., Temperton, V.M. (2017):
Methane yield of biomass from extensive grassland is affected by compositional changes induced by order of arrival
GCB Bioenergy 9 (10), 1555 - 1562 10.1111/gcbb.12441
Pronk, G.J., Heister, K., Vogel, C., Babin, D., Bachmann, J., Ding, G.-C., Ditterich, F., Gerzabek, M.H., Giebler, J., Hemkemeyer, M., Kandeler, E., Mouvenchery, Y.K., Miltner, A., Poll, C., Schaumann, G.E., Smalla, K., Steinbach, A., Tanuwidjaja, I., Tebbe, C.C., Wick, L.Y., Woche, S.K., Totsche, K.U., Schloter, M., Kögel-Knabner, I. (2017):
Interaction of minerals, organic matter, and microorganisms during biogeochemical interface formation as shown by a series of artificial soil experiments
Biol. Fert. Soils 53 (1), 9 - 22 10.1007/s00374-016-1161-1
Rakowska, M.I., Smit, M.P.J., Kupryianchyk, D., Qin, J., Koelmans, A.A., Rijnaarts, H.H.M., Grotenhuis, T. (2017):
Turbulent mixing accelerates PAH desorption due to fragmentation of sediment particle aggregates
J. Soils Sediments 17 (1), 277 - 285 10.1007/s11368-016-1556-5
Rohde, M.-T., Tischer, S., Harms, H., Rohwerder, T. (2017):
Production of 2-hydroxyisobutyric acid from methanol by Methylobacterium extorquens AM1 expressing (R)-3-hydroxybutyryl coenzyme A-isomerizing enzymes
Appl. Environ. Microb. 83 (3), e02622-16 10.1128/AEM.02622-16
Rosa, L.F.M., Hunger, S., Gimkiewicz, C., Zehnsdorf, A., Harnisch, F. (2017):
Paving the way for bioelectrotechnology: Integrating electrochemistry into bioreactors
Eng. Life Sci. 17 (1), 77 - 85 10.1002/elsc.201600105
Rosa, L.F.M., Koch, C., Korth, B., Harnisch, F. (2017):
Electron harvest and treatment of amendment free municipal wastewater using microbial anodes: A case study
J. Power Sources 356 , 319 - 323 10.1016/j.jpowsour.2017.03.095
Schmidt, J., Fester, T., Schulz, E., Michalzik, B., Buscot, F., Gutknecht, J. (2017):
Effects of plant-symbiotic relationships on the living soil microbial community and microbial necromass in a long-term agro-ecosystem
Sci. Total Environ. 581–582 , 756 - 765 10.1016/j.scitotenv.2017.01.005
Schröder, U., Harnisch, F. (2017):
Life electric—nature as a blueprint for the development of microbial electrochemical technologies
Joule 1 (2), 244 - 252 10.1016/j.joule.2017.07.010
Schultze-Nobre, L., Wiessner, A., Bartsch, C., Paschke, H., Stefanakis, A.I., Aylward, L.A., Kuschk, P. (2017):
Removal of dimethylphenols and ammonium in laboratory-scale horizontal subsurface flow constructed wetlands
Eng. Life Sci. 17 (12), 1224 - 1233 10.1002/elsc.201600213
Urban, C., Harnisch, F. (2017):
Deterioration of aqueous n-octanoate electrolysis with electrolytic conductivity collapse caused by the formation of n-octanoic acid/n-octanoate agglomerates
ChemElectroChem 4 (6), 1378 - 1389 10.1002/celc.201700069
Urban, C., Xu, J., Sträuber, H., dos Santos Dantas, T.R., Mühlenberg, J., Härtig, C., Angenent, L.T., Harnisch, F. (2017):
Production of drop-in fuels from biomass at high selectivity by combined microbial and electrochemical conversion
Energy Environ. Sci. 10 (10), 2231 - 2244 10.1039/c7ee01303e
Winter, M., Thürmann, L., Gu, Z., Schüürmann, G., Herberth, G., Hinz, D., von Bergen, M., Harms, H., Olek, S., Röder, S., Borte, M., Eils, R., Lehmann, I., Trump, S. (2017):
The benzene metabolite 1,4-benzoquinone reduces regulatory T-cell function: A potential mechanism for tobacco smoke–associated atopic dermatitis
J. Allergy Clin. Immunol. 140 (2), 603 - 605 10.1016/j.jaci.2017.01.034
Worrich, A., Stryhanyuk, H., Musat, N., König, S., Banitz, T., Centler, F., Frank, K., Thullner, M., Harms, H., Richnow, H.-H., Miltner, A., Kästner, M., Wick, L.Y. (2017):
Mycelium-mediated transfer of water and nutrients stimulates bacterial activity in dry and oligotrophic environments
Nat. Commun. 8 , art. 15472 10.1038/ncomms15472
Zhou, Z.-Q., Yang, L.-Y., Yan, R., Zhao, J., Liu, Y.-Q., Lai, L., Jiang, F.-L., Maskow, T., Liu, Y. (2017):
Mn-Doped ZnSe quantum dots initiated mild and rapid cation exchange for tailoring the composition and optical properties of colloid nanocrystals: novel template, new applications
Nanoscale 9 (8), 2824 - 2835 10.1039/C6NR09094J

to index

2016 (52)

Akyol, C., Ozbayram, E.G., Kleinsteuber, S., Ince, B. (2016):
Anaerobic co-digestion of cow manure and barley: Effect of cow manure to barley ratio on methane production and digestion stability
Environ. Prog. Sustain. Energy 35 (2), 589 - 595 10.1002/ep.12250
Alvarez-Zaldívar, P., Centler, F., Maier, U., Thullner, M., Imfeld, G. (2016):
Biogeochemical modelling of in situ biodegradation and stable isotope fractionation of intermediate chloroethenes in a horizontal subsurface flow wetland
Ecol. Eng. 90 , 170 - 179 10.1016/j.ecoleng.2016.01.037
Banitz, T., Frank, K., Wick, L.Y., Harms, H., Johst, K. (2016):
Spatial metrics as indicators of biodegradation benefits from bacterial dispersal networks
Ecol. Indic. 60 , 54 - 63 10.1016/j.ecolind.2015.06.021
Berthold, T., Centler, F., Hübschmann, T., Remer, R., Thullner, M., Harms, H., Wick, L.Y. (2016):
Mycelia as a focal point for horizontal gene transfer among soil bacteria
Sci. Rep. 6 , art. 36390 10.1038/srep36390
Brussaard, C.P.D., Peperzak, L., Beggah, S., Wick, L.Y., Wuerz, B., Weber, J., Arey, J.S., van der Burg, B., Jonas, A., Huisman, J., van der Meer, J.R. (2016):
Immediate ecotoxicological effects of short-lived oil spills on marine biota
Nat. Commun. 7 , art. 11206 10.1038/ncomms11206
Bühligen, F., Lucas, R., Nikolausz, M., Kleinsteuber, S. (2016):
A T-RFLP database for the rapid profiling of methanogenic communities in anaerobic digesters
Anaerobe 39 , 114 - 116 10.1016/j.anaerobe.2016.03.013
Chakravorty, S., Bhattacharya, S., Chatzinotas, A., Chakraborty, W., Bhattacharya, D., Gachhui, R. (2016):
Kombucha tea fermentation: Microbial and biochemical dynamics
Int. J. Food Microbiol. 220 , 63 - 72 10.1016/j.ijfoodmicro.2015.12.015
Coban, H., Miltner, A., Centler, F., Kästner, M. (2016):
Effects of compost, biochar and manure on carbon mineralization of biogas residues applied to soil
Eur. J. Soil Sci. 67 (2), 217 - 225 10.1111/ejss.12326
de Carvalho, C.C.C.R., Fischer, M.A., Kirsten, S., Würz, B., Wick, L.Y., Heipieper, H.J. (2016):
Adaptive response of Rhodococcus opacus PWD4 to salt and phenolic stress on the level of mycolic acids
AMB Express 6 , art. 66 10.1186/s13568-016-0241-9
Ehlen, L., Tödtmann, J., Specht, S., Kallies, R., Papies, J., Müller, M.A., Junglen, S., Drosten, C., Eckerle, I. (2016):
Epithelial cell lines of the cotton rat (Sigmodon hispidus) are highly susceptible in vitro models to zoonotic Bunya-, Rhabdo-, and Flaviviruses
Virol. J. 13 , art. 74 10.1186/s12985-016-0531-5
Ghanem, N., Kiesel, B., Kallies, R., Harms, H., Chatzinotas, A., Wick, L.Y. (2016):
Marine phages as tracers: effects of size, morphology, and physico–chemical surface properties on transport in a porous medium
Environ. Sci. Technol. 50 (23), 12816 - 12824 10.1021/acs.est.6b04236
Gimkiewicz, C., Hunger, S., Harnisch, F. (2016):
Evaluating the feasibility of microbial electrosynthesis based on Gluconobacter oxydans
ChemElectroChem 3 (9), 1337 - 1346 10.1002/celc.201600175
Grossmann, L., Beisser, D., Bock, C., Chatzinotas, A., Jensen, M., Preisfeld, A., Psenner, R., Rahmann, S., Wodniok, S., Boenigk, J. (2016):
Trade‐off between taxon diversity and functional diversity in European lake ecosystems
Mol. Ecol. 25 (23), 5876 - 5888 10.1111/mec.13878
Günther, S., Faust, K., Schumann, J., Harms, H., Raes, J., Müller, S. (2016):
Species-sorting and mass-transfer paradigms control managed natural metacommunities
Environ. Microbiol. 18 (12), 4862 - 4877 10.1111/1462-2920.13402
Hofmann, J., Peltri, G., Sträuber, H., Müller, L., Schumacher, B., Müller, U., Liebetrau, J. (2016):
Statistical interpretation of semi-continuous anaerobic digestion experiments on the laboratory scale
Chem. Eng. Technol. 39 (4), 643 - 651 10.1002/ceat.201500473
Hofmann, U., Schlosser, D. (2016):
Biochemical and physicochemical processes contributing to the removal of endocrine-disrupting chemicals and pharmaceuticals by the aquatic ascomycete Phoma sp. UHH 5-1-03
Appl. Microbiol. Biotechnol. 100 (5), 2381 - 2399 10.1007/s00253-015-7113-0
Jahn, M., Vorpahl, C., Hübschmann, T., Harms, H., Müller, S. (2016):
Copy number variability of expression plasmids determined by cell sorting and Droplet Digital PCR
Microb. Cell. Fact. 15 , art. 211 10.1186/s12934-016-0610-8
Janke, A., Leite, A., Batista, K., Weinrich, S., Sträuber, H., Nikolausz, M., Nelles, M., Stinner, W. (2016):
Optimization of hydrolysis and volatile fatty acids production from sugarcane filter cake: Effects of urea supplementation and sodium hydroxide pretreatment
Bioresour. Technol. 199 , 235 - 244 10.1016/j.biortech.2015.07.117
Janke, L., Leite, A.F., Batista, K., Silva, W., Nikolausz, M., Nelles, M., Stinner, W. (2016):
Enhancing biogas production from vinasse in sugarcane biorefineries: Effects of urea and trace elements supplementation on process performance and stability
Bioresour. Technol. 217 , 10 - 20 10.1016/j.biortech.2016.01.110
Janke, L., Leite, A.F., Nikolausz, M., Radetski, C.M., Nelles, M., Stinner, W. (2016):
Comparison of start-up strategies and process performance during semi-continuous anaerobic digestion of sugarcane filter cake co-digested with bagasse
Waste Manage. 48 , 199 - 208 10.1016/j.wasman.2015.11.007
Jeske, J.T., Müller, R.A., Wendeberg, A., Bertilsson, S. (2016):
Microscale decoupling of sediment oxygen consumption and microbial biomass in an oligotrophic lake
Freshw. Biol. 61 (9), 1477 - 1491 10.1111/fwb.12787
Khan, A.M., Wick, L.Y., Harms, H., Thullner, M. (2016):
Biodegradation of vapor-phase toluene in unsaturated porous media: Column experiments
Environ. Pollut. 211 , 325 - 331 10.1016/j.envpol.2016.01.013
Koch, C., Harnisch, F. (2016):
What is the essence of microbial electroactivity?
Front. Microbiol. 7 , art. 1890 10.3389/fmicb.2016.01890
Koch, C., Harnisch, F. (2016):
Is there a specific ecological niche for electroactive microorganisms?
ChemElectroChem 3 (9), 1282 - 1295 10.1002/celc.201600079
Korth, B., Maskow, T., Picioreanu, C., Harnisch, F. (2016):
The microbial electrochemical Peltier heat: an energetic burden and engineering chance for primary microbial electrochemical technologies
Energy Environ. Sci. 9 (8), 2539 - 2544 10.1039/c6ee01428c
Kretzschmar, J., Rosa, L.F.M., Zosel, J., Mertig, M., Liebetrau, J., Harnisch, F. (2016):
A microbial biosensor platform for inline quantification of acetate in anaerobic digestion: potential and challenges
Chem. Eng. Technol. 39 (4), 637 - 642 10.1002/ceat.201500406
Krueger, M.C., Bergmann, M., Schlosser, D. (2016):
Widespread ability of fungi to drive quinone redox cycling for biodegradation
FEMS Microbiol. Lett. 363 (11), fnw105 10.1093/femsle/fnw105
Leite, A.F., Janke, L., Harms, H., Richnow, H.-H., Nikolausz, M. (2016):
Lessons learned from the microbial ecology resulting from different inoculation strategies for biogas production from waste products of the bioethanol/sugar industry
Biotechnol. Biofuels 9 , art. 144 10.1186/s13068-016-0548-4
Lieder, S., Jahn, M., Koepff, J., Müller, S., Takors, R. (2016):
Environmental stress speeds up DNA replication in Pseudomonas putida in chemostat cultivations
Biotechnol. J. 11 (1), 155 - 163 10.1002/biot.201500059
Lünsmann, V., Kappelmeyer, U., Benndorf, R., Martínez-Lavanchy, P.M., Taubert, A., Adrian, L., Duarte, M., Pieper, D.H., von Bergen, M., Müller, J.A., Heipieper, H.J., Jehmlich, N. (2016):
In situ protein-SIP highlights Burkholderiaceae as key players degrading toluene by para ring hydroxylation in a constructed wetland model
Environ. Microbiol. 18 (4), 1176 - 1186 10.1111/1462-2920.13133
Mulat, D.G., Jacobi, H.F., Feilberg, A., Adamsen, A.P.S., Richnow, H.-H., Nikolausz, M. (2016):
Changing feeding regimes to demonstrate flexible biogas production: effects on process performance, microbial community structure, and methanogenesis pathways
Appl. Environ. Microb. 82 (2), 438 - 449 10.1128/AEM.02320-15
Newcomer, M.E., Hubbard, S.S., Fleckenstein, J.H., Maier, U., Schmidt, C., Thullner, M., Ulrich, C., Flipo, N., Rubin, Y. (2016):
Simulating bioclogging effects on dynamic riverbed permeability and infiltration
Water Resour. Res. 52 (4), 2883 - 2900 10.1002/2015wr018351
Otto, S., Banitz, T., Thullner, M., Harms, H., Wick, L.Y. (2016):
Effects of facilitated bacterial dispersal on the degradation and emission of a desorbing contaminant
Environ. Sci. Technol. 50 (12), 6320 - 6326 10.1021/acs.est.6b00567
Popp, D., Harms, H., Sträuber, H. (2016):
The alkaloid gramine in the anaerobic digestion process—inhibition and adaptation of the methanogenic community
Appl. Microbiol. Biotechnol. 100 (16), 7311 - 7322 10.1007/s00253-016-7571-z
Rohde, M.-T., Paufler, S., Harms, H., Maskow, T. (2016):
Calorespirometric feeding control enhances bioproduction from toxic feedstocks—Demonstration for biopolymer production out of methanol
Biotechnol. Bioeng. 113 (10), 2113 - 2121 10.1002/bit.25986
Saleem, M., Fetzer, I., Harms, H., Chatzinotas, A. (2016):
Trophic complexity in aqueous systems: bacterial species richness and protistan predation regulate dissolved organic carbon and dissolved total nitrogen removal
Proc. R. Soc. B-Biol. Sci. 283 (1825), art. 20152724 10.1098/rspb.2015.2724
Schweigert, M., Herrmann, S., Miltner, A., Fester, T., Kästner, M. (2016):
Corrigendum to "Fate of ectomycorrhizal fungal biomass in a soil bioreactor system and its contribution to soil organic matter formation" [Soil Biol. Biogeochem. 88 (2015) 120–127]
Soil Biol. Biochem. 92 , 242 10.1016/j.soilbio.2015.09.004
Stang, C., Harnisch, F. (2016):
The dilemma of supporting electrolytes for electroorganic synthesis: a case study on Kolbe electrolysis
ChemSusChem 9 (1), 50 - 60 10.1002/cssc.201501407
Starke, R., Keller, A., Jehmlich, N., Vogt, C., Richnow, H.H., Kleinsteuber, S., von Bergen, M., Seifert, J. (2016):
Pulsed ¹³C₂-acetate protein-SIP unveils Epsilonproteobacteria as dominant acetate utilizers in a sulfate-reducing microbial community mineralizing benzene
Microb. Ecol. 71 (4), 901 - 911 10.1007/s00248-016-0731-y
Stefanakis, A.I., Seeger, E., Dorer, C., Sinke, A., Thullner, M. (2016):
Performance of pilot-scale horizontal subsurface flow constructed wetlands treating groundwater contaminated with phenols and petroleum derivatives
Ecol. Eng. 95 , 514 - 526 10.1016/j.ecoleng.2016.06.105
Steinauer, K., Chatzinotas, A., Eisenhauer, N. (2016):
Root exudate cocktails: the link between plant diversity and soil microorganisms?
Ecol. Evol. 6 (20), 7387 - 7396 10.1002/ece3.2454
Stolpovsky, K., Fetzer, I., van Cappellen, P., Thullner, M. (2016):
Influence of dormancy on microbial competition under intermittent substrate supply: insights from model simulations
FEMS Microbiol. Ecol. 92 (6), fiw071 10.1093/femsec/fiw071
Sträuber, H., Lucas, R., Kleinsteuber, S. (2016):
Metabolic and microbial community dynamics during the anaerobic digestion of maize silage in a two-phase process
Appl. Microbiol. Biotechnol. 100 (1), 479 - 491 10.1007/s00253-015-6996-0
Vila, T., Nazir, R., Rozental, S., dos Santos, G.M.P., Calixto, R.O.R., Barreto-Bergter, E., Wick, L.Y., van Elsas, J.D. (2016):
The role of hydrophobicity and surface receptors at hyphae of Lyophyllum sp. strain Karsten in the interaction with Burkholderia terrae BS001 – Implications for interactions in soil
Front. Microbiol. 7 , art. 1689 10.3389/fmicb.2016.01689
Wintsche, B., Glaser, K., Sträuber, H., Centler, F., Liebetrau, J., Harms, H., Kleinsteuber, S. (2016):
Trace elements induce predominance among methanogenic activity in anaerobic digestion
Front. Microbiol. 7 , art. 2034 10.3389/fmicb.2016.02034
Witkowski, P.T., Drexler, J.F., Kallies, R., Ličková, M., Bokorová, S., Mananga, G.D., Szemes, T., Leroy, E.M., Krüger, D.H., Drosten, C., Klempa, B. (2016):
Phylogenetic analysis of a newfound bat-borne hantavirus supports a laurasiatherian host association for ancestral mammalian hantaviruses
Infect. Genet. Evol. 41 , 113 - 119 10.1016/j.meegid.2016.03.036
Worrich, A., König, S., Banitz, T., Centler, F., Frank, K., Thullner, M., Harms, H., Miltner, A., Wick, L.Y., Kaestner, M. (2016):
Bacterial dispersal promotes biodegradation in heterogeneous systems exposed to osmotic stress
Front. Microbiol. 7 , art. 1214 10.3389/fmicb.2016.01214
Worrich, A., König, S., Miltner, A., Banitz, T., Centler, F., Frank, K., Thullner, M., Harms, H., Kästner, M., Wick, L.Y. (2016):
Mycelium-like networks increase bacterial dispersal, growth, and biodegradation in a model ecosystem at various water potentials
Appl. Environ. Microb. 82 (10), 2902 - 2908 10.1128/AEM.03901-15
Zhou, S., Nikolausz, M., Zhang, J., Riya, S., Terada, A., Hosomi, M. (2016):
Variation of the microbial community in thermophilic anaerobic digestion of pig manure mixed with different ratios of rice straw
J. Biosci. Bioeng. 122 (3), 334 - 340 10.1016/j.jbiosc.2016.02.012
Ziganshin, A.M., Schmidt, T., Lv, Z., Liebetrau, J., Richnow, H.H., Kleinsteuber, S., Nikolausz, M. (2016):
Reduction of the hydraulic retention time at constant high organic loading rate to reach the microbial limits of anaerobic digestion in various reactor systems
Bioresour. Technol. 217 , 62 - 71 10.1016/j.biortech.2016.01.096
Ziganshin, A.M., Ziganshina, E.E., Kleinsteuber, S., Nikolausz, M. (2016):
Comparative analysis of methanogenic communities in different laboratory-scale anaerobic digesters
Archaea 2016 , art. 3401272 10.1155/2016/3401272
Zimmermann, J., Hübschmann, T., Schattenberg, F., Schumann, J., Durek, P., Riedel, R., Friedrich, M., Glauben, R., Siegmund, B., Radbruch, A., Müller, S., Chang, H.-D. (2016):
High-resolution microbiota flow cytometry reveals dynamic colitis-associated changes in fecal bacterial composition
Eur. J. Immunol. 46 (5), 1300 - 1303 10.1002/eji.201646297

to index

2015 (58)

Šantl-Temkiv, T., Sahyoun, M., Finster, K., Hartmann, S., Augustin-Bauditz, S., Stratmann, F., Wex, H., Clauss, T., Woetmann Nielsen, N., Havskov Sørensen, J., Smith Korsholm, U., Wick, L.Y., Gosewinkel Karlson, U. (2015):
Characterization of airborne ice-nucleation-active bacteria and bacterial fragments
Atmos. Environ. 109 , 105 - 117 10.1016/j.atmosenv.2015.02.060
Araya, K., Ugarte, A., Azócar, L., Valerio, O., Wick, L.Y., Ciudad, G. (2015):
Whole cell three phase bioreactors allow for effective production of fatty acid alkyl esters derived from microalgae lipids
Fuel 144 , 25 - 32 10.1016/j.fuel.2014.12.014
Brown, R.K., Harnisch, F., Dockhorn, T., Schröder, U. (2015):
Examining sludge production in bioelectrochemical systems treating domestic wastewater
Bioresour. Technol. 198 , 913 - 917 10.1016/j.biortech.2015.09.081
Centler, F., Thullner, M. (2015):
Chemotactic preferences govern competition and pattern formation in simulated two-strain microbial communities
Front. Microbiol. 6 , art. 40 10.3389/fmicb.2015.00040
dos Santos, T.R., Harnisch, F., Nilges, P., Schröder, U. (2015):
Electrochemistry for biofuel generation: transformation of fatty acids and triglycerides to diesel-like olefin/ether mixtures and olefins
ChemSusChem 8 (5), 886 - 893 10.1002/cssc.201403249
dos Santos, T.R., Nilges, P., Sauter, W., Harnisch, F., Schröder, U. (2015):
Electrochemistry for the generation of renewable chemicals: electrochemical conversion of levulinic acid
RSC Advances 5 (34), 26634 - 26643 10.1039/c4ra16303f
El Amrani, A., Dumas, A.-S., Wick, L.Y., Yergeau, E., Berthomé, R. (2015):
“Omics” insights into PAH degradation toward improved green remediation biotechnologies
Environ. Sci. Technol. 49 (19), 11281 - 11291 10.1021/acs.est.5b01740
Fester, T. (2015):
Plant metabolite profiles and the buffering capacities of ecosystems
Phytochemistry 110 , 6 - 12 10.1016/j.phytochem.2014.12.015
Fetzer, I., Johst, K., Schäwe, R., Banitz, T., Harms, H., Chatzinotas, A. (2015):
The extent of functional redundancy changes as species’ roles shift in different environments
Proc. Natl. Acad. Sci. U.S.A. 112 (48), 14888 - 14893 10.1073/pnas.1505587112
Freel, K.C., Krueger, M.C., Farasin, J., Brochier-Armanet, C., Barbe, V., Andrès, J., Cholley, P.-E., Dillies, M.-A., Jagla, B., Koechler, S., Leva, Y., Magdelenat, G., Plewniak, F., Proux, C., Coppée, J.-Y., Bertin, P.N., Heipieper, H.J., Arsène-Ploetze, F. (2015):
Adaptation in toxic environments: arsenic genomic islands in the bacterial genus Thiomonas
PLOS One 10 (9), e0139011 10.1371/journal.pone.0139011
Gharasoo, M., Centler, F., van Cappellen, P., Wick, L.Y., Thullner, M. (2015):
Kinetics of substrate biodegradation under the cumulative effects of bioavailability and self-inhibition
Environ. Sci. Technol. 49 (9), 5529 - 5537 10.1021/es505837v
Glaser, K., Kuppardt, A., Boenigk, J., Harms, H., Fetzer, I., Chatzinotas, A. (2015):
The influence of environmental factors on protistan microorganisms in grassland soils along a land-use gradient
Sci. Total Environ. 537 , 33 - 42 10.1016/j.scitotenv.2015.07.158
Grobbler, C., Virdis, B., Nouwens, A., Harnisch, F., Rabaey, K., Bond, P.L. (2015):
Use of SWATH mass spectrometry for quantitative proteomic investigation of Shewanella oneidensis MR-1 biofilms grown on graphite cloth electrodes
Syst. Appl. Microbiol. 38 , 135 - 139 10.1016/j.syapm.2014.11.007
Günther, S., Müller, S. (2015):
Facilitated gate setting by sequential dot plot scanning
Cytom. Part A 87 (7), 661 - 664 10.1002/cyto.a.22656
Harnisch, F., Rosa, L.F.M., Kracke, F., Virdis, B., Krömer, J.O. (2015):
Electrifying white biotechnology: engineering and economic potential of electricity-driven bio-production
ChemSusChem 8 (5), 758 - 766 10.1002/cssc.201402736
Jahn, M., Günther, S., Müller, S. (2015):
Non-random distribution of macromolecules as driving forces for phenotypic variation
Curr. Opin. Microbiol. 25 , 49 - 55 10.1016/j.mib.2015.04.005
Janke, L., Leite, A., Nikolausz, M., Schmidt, T., Liebetrau, J., Nelles, M., Stinner, W. (2015):
Biogas production from sugarcane waste: assessment on kinetic challenges for process designing
Int. J. Mol. Sci. 16 (9), 20685 - 20703 10.3390/ijms160920685
Jimenez-Sanchez, C., Wick, L.Y., Cantos, M., Ortega-Calvo, J.-J. (2015):
Impact of dissolved organic matter on bacterial tactic motility, attachment, and transport
Environ. Sci. Technol. 49 (7), 4498 - 4505 10.1021/es5056484
Keller, A.H., Schleinitz, K.M., Starke, R., Bertilsson, S., Vogt, C., Kleinsteuber, S. (2015):
Metagenome-based metabolic reconstruction revealsthe ecophysiological function of Epsilonproteobacteria in a hydrocarbon-contaminated sulfidic aquifer
Front. Microbiol. 6 , art. 1396 10.3389/fmicb.2015.01396
King, N., Müller, S. (2015):
Environmental microbiology: Revisiting the physiology of microorganisms on the single cell scale. Editorial overview
Curr. Opin. Microbiol. 25 , v - vi 10.1016/j.mib.2015.06.006
Koch, C., Kuchenbuch, A., Kretzschmar, J., Wedwitschka, H., Liebetrau, J., Müller, S., Harnisch, F. (2015):
Coupling electric energy and biogas production in anaerobic digesters – impacts on the microbiome
RSC Advances 5 (40), 31329 - 31340 10.1039/C5RA03496E
Korth, B., Rosa, L.F.M., Harnisch, F., Picioreanu, C. (2015):
A framework for modeling electroactive microbial biofilms performing direct electron transfer
Bioelectrochemistry 106 , 194 - 206 10.1016/j.bioelechem.2015.03.010
Krohn, S., Engelmann, C., Raatz, P., Hoffmeister, A., Böhlig, A., Zeller, K., Böhm, S., Chatzinotas, A., Berg, T. (2015):
Duodenal microbiota is not the origin for bacterial translocation in liver cirrhosis
J. Hepatol. 62 (Suppl. 2), S372 10.1016/S0168-8278(15)30401-3
Krueger, M.C., Harms, H., Schlosser, D. (2015):
Prospects for microbiological solutions to environmental pollution with plastics
Appl. Microbiol. Biotechnol. 99 (1), 8857 - 8874 10.1007/s00253-015-6879-4
Krueger, M.C., Hofmann, U., Moeder, M., Schlosser, D. (2015):
Potential of wood-rotting fungi to attack polystyrene sulfonate and its depolymerisation by Gloeophyllum trabeum via hydroquinone-driven Fenton chemistry
PLOS One 10 (7), e0131773 10.1371/journal.pone.0131773
Kurteva-Yaneva, N., Zahn, M., Weichler, M.-T., Starke, R., Harms, H., Müller, R.H., Sträter, N., Rohwerder, T. (2015):
Structural basis of the stereospecificity of bacterial B₁₂-dependent 2-hydroxyisobutyryl-CoA mutase
J. Biol. Chem. 290 , 9727 - 9737 10.1074/jbc.M115.645689
Leite, A.F., Janke, L., Harms, H., Zang, J.W., Fonseca-Zang, W.A., Stinner, W., Nikolausz, M. (2015):
Assessment of the variations in characteristics and methane potential of major waste products from the Brazilian bioethanol industry along an operating season
Energy Fuels 29 (7), 4022 - 4029 10.1021/ef502807s
Leite, A.F., Janke, L., Lv, Z., Harms, H., Richnow, H.-H., Nikolausz, M. (2015):
Improved monitoring of semi-continuous anaerobic digestion of sugarcane waste: effects of increasing organic loading rate on methanogenic community dynamics
Int. J. Mol. Sci. 16 (10), 23210 - 23226 10.3390/ijms161023210
Lindmeyer, M., Jahn, M., Vorpahl, C., Müller, S., Schmid, A., Bühler, B. (2015):
Variability in subpopulation formation propagates into biocatalytic variability of engineered Pseudomonas putida strains
Front. Microbiol. 6 , art. 1042 10.3389/fmicb.2015.01042
Lucas, R., Kuchenbuch, A., Fetzer, I., Harms, H., Kleinsteuber, S. (2015):
Long-term monitoring reveals stable and remarkably similar microbial communities in parallel full-scale biogas reactors digesting energy crops
FEMS Microbiol. Ecol. 91 (3), fiv004 10.1093/femsec/fiv004
Martínez-Lavanchy, P.M., Chen, Z., Lünsmann, V., Marin-Cevada, V., Vilchez-Vargas, R., Pieper, D.H., Reiche, N., Kappelmeyer, U., Imparato, V., Junca, H., Nijenhuis, I., Müller, J.A., Kuschk, P., Heipieper, H.J. (2015):
Microbial toluene removal in hypoxic model constructed wetlands occurs predominantly via the ring monooxygenation pathway
Appl. Environ. Microb. 81 (18), 6241 - 6252 10.1128/AEM.01822-15
Maskow, T., Paufler, S. (2015):
What does calorimetry and thermodynamics of living cells tell us?
Methods 76 , 3 - 10 10.1016/j.ymeth.2014.10.035
Melzer, S., Winter, G., Jäger, K., Hübschmann, T., Hause, G., Syrowatka, F., Harms, H., Tárnok, A., Müller, S. (2015):
Cytometric patterns reveal growth states of Shewanella putrefaciens
Microb. Biotechnol. 8 (3), 379 - 391 10.1111/1751-7915.12154
Otto, B., Beuchel, C., Liers, C., Reisser, W., Harms, H., Schlosser, D. (2015):
Laccase-like enzyme activities from chlorophycean green algae with potential for bioconversion of phenolic pollutants
FEMS Microbiol. Lett. 362 (11), fnv072 10.1093/femsle/fnv072
Pfeiffer, M., Batbayar, G., Hofmann, J., Siegfried, K., Karthe, D., Hahn-Tomer, S. (2015):
Investigating arsenic (As) occurrence and sources in ground, surface, waste and drinking water in northern Mongolia
Environ. Earth Sci. 73 (2), 649 - 662 10.1007/s12665-013-3029-0
Popp, D., Schrader, S., Kleinsteuber, S., Harms, H., Sträuber, H. (2015):
Biogas production from coumarin-rich plants—inhibition by coumarin and recovery by adaptation of the bacterial community
FEMS Microbiol. Ecol. 91 (9), fiv103 10.1093/femsec/fiv103
Porsch, K., Wirth, B., Tóth, E.M., Schattenberg, F., Nikolausz, M. (2015):
Characterization of wheat straw-degrading anaerobic alkali-tolerant mixed cultures from soda lake sediments by molecular and cultivation techniques
Microb. Biotechnol. 8 (5), 801 - 814 10.1111/1751-7915.12272
Pous, N., Koch, C., Vilà-Rovira, A., Balaguer, M.D., Colprim, J., Mühlenberg, J., Müller, S., Harnisch, F., Puig, S. (2015):
Monitoring and engineering reactor microbiomes of denitrifying bioelectrochemical systems
RSC Advances 5 (84), 68326 - 68333 10.1039/c5ra12113b
Pradhan, A., Seena, S., Schlosser, D., Gerth, K., Helm, S., Dobritzsch, M., Krauss, G.-J., Dobritzsch, D., Pascoal, C., Cássio, F. (2015):
Fungi from metal-polluted streams may have high ability to cope with the oxidative stress induced by copper oxide nanoparticles
Environ. Toxicol. Chem. 34 (4), 923 - 930 10.1002/etc.2879
Przybylski, D., Rohwerder, T., Dilßner, C., Maskow, T., Harms, H., Müller, R.H. (2015):
Exploiting mixtures of H₂, CO₂, and O₂ for improved production of methacrylate precursor 2-hydroxyisobutyric acid by engineered Cupriavidus necator strains
Appl. Microbiol. Biotechnol. 99 (5), 2131 - 2145 10.1007/s00253-014-6266-6
Qin, J., Moustafa, A., Harms, H., El-Din, M.G., Wick, L.Y. (2015):
The power of power: electrokinetic control of PAH interactions with exfoliated graphite
J. Hazard. Mater. 288 , 25 - 33 10.1016/j.jhazmat.2015.02.008
Qin, J., Sun, X., Liu, Y., Berthold, T., Harms, H., Wick, L.Y. (2015):
Electrokinetic control of bacterial deposition and transport
Environ. Sci. Technol. 49 (9), 5663 - 5671 10.1021/es506245y
Richter, S., Fetzer, I., Thullner, M., Centler, F., Dittrich, P. (2015):
Towards rule-based metabolic databases: a requirement analysis based on KEGG
Int. J. Data Min. Bioinform. 13 (3), 289 - 319 10.1504/IJDMB.2015.072103
Rödiger, S., Burdukiewicz, M., Blagodatskikh, K., Jahn, M., Schierack, P. (2015):
R as an environment for the reproducible analysis of DNA amplification experiments
R Journal 7 (1), 127 - 150
Schkolnik, G., Schmidt, M., Mazza, M.G., Harnisch, F., Musat, N. (2015):
In situ analysis of a silver nanoparticle-precipitating Shewanella biofilm by surface enhanced confocal Raman microscopy
PLOS One 10 (12), e0145871 10.1371/journal.pone.0145871
Schröder, U., Harnisch, F., Angenent, L.T. (2015):
Microbial electrochemistry and technology: terminology and classification
Energy Environ. Sci. 8 (2), 513 - 519 10.1039/c4ee03359k
Schweigert, M., Herrmann, S., Miltner, A., Fester, T., Kästner, M. (2015):
Fate of ectomycorrhizal fungal biomass in a soil bioreactor system and its contribution to soil organic matter formation
Soil Biol. Biochem. 88 , 120 - 127 10.1016/j.soilbio.2015.05.012
Shamim, S., Rehman, A. (2015):
Antioxidative enzyme profiling and biosorption ability of Cupriavidus metallidurans CH34 and Pseudomonas putida mt2 under cadmium stress
J. Basic Microbiol. 55 (3), 374 - 381 10.1002/jobm.201300038
Shan, Y., Song, Y., Liu, Y., Liu, R., Du, J., Zeng, P. (2015):
Adsorption of berberine by polymeric resin H103: kinetics and thermodynamics
Environ. Earth Sci. 73 (9), 4989 - 4994 10.1007/s12665-015-4344-4
Siegfried, K., Hahn-Tomer, S., Koelsch, A., Osterwalder, E., Mattusch, J., Stärk, H.-J., Meichtry, M., De Seta, E.G., Reina, F.D., Panigatti, C., Litter, M.I., Harms, H. (2015):
Introducing simple detection of bioavailable arsenic at Rafaela (Santa Fe Province, Argentina) using the ARSOlux biosensor
Int. J. Environ. Res. Public Health 12 (5), 5465 - 5482 10.3390/ijerph120505465
Simon, A., Bindschedler, S., Job, D., Wick, L.Y., Filippidou, S., Kooli, W.M., Verrecchia, E.P., Junier, P. (2015):
Exploiting the fungal highway: development of a novel tool for the in situ isolation of bacteria migrating along fungal mycelium
FEMS Microbiol. Ecol. 91 (11), fiv116 10.1093/femsec/fiv116
Stasik, S., Wick, L.Y., Wendt-Potthoff, K. (2015):
Anaerobic BTEX degradation in oil sands tailings ponds: impact of labile organic carbon and sulfate-reducing bacteria
Chemosphere 138 , 133 - 139 10.1016/j.chemosphere.2015.05.068
Steinbach, A., Schulz, S., Giebler, J., Schulz, S., Pronk, G.J., Kögel-Knabner, I., Harms, H., Wick, L.Y., Schloter, M. (2015):
Clay minerals and metal oxides strongly influence the structure of alkane-degrading microbial communities during soil maturation
ISME J. 9 (7), 1687 - 1691 10.1038/ismej.2014.243
Wei, M., Harnisch, F., Vogt, C., Ahlheim, J., Neu, T.R., Richnow, H.H. (2015):
Harvesting electricity from benzene and ammonium-contaminated groundwater using a microbial fuel cell with an aerated cathode
RSC Advances 5 (7), 5321 - 5330 10.1039/c4ra12144a
Wei, M., Rakoczy, J., Vogt, C., Harnisch, F., Schumann, R., Richnow, H.H. (2015):
Enhancement and monitoring of pollutant removal in a constructed wetland by microbial electrochemical technology
Bioresour. Technol. 196 , 490 - 499 10.1016/j.biortech.2015.07.111
Weichler, M.-T., Kurteva-Yaneva, N., Przybylski, D., Schuster, J., Müller, R.H., Harms, H., Rohwerder, T. (2015):
Thermophilic coenzyme B₁₂-dependent acyl-coenzyme A (CoA) mutase from Kyrpidia tusciae DSM 2912 preferentially catalyzes isomerization of (R)-3-hydroxybutyryl- and 2-hydroxyisobutyryl-CoA
Appl. Environ. Microb. 81 (14), 4564 - 4572 10.1128/AEM.00716-15
Witkowski, P.T., Kallies, R., Hoveka, J., Auste, B., Ithete, N.I., Šoltys, K., Szemes, T., Drosten, C., Preiser, W., Klempa, B., Mfune, J.K.E., Kruger, D.H. (2015):
Novel arenavirus isolates from Namaqua rock mice, Namibia, Southern Africa
Emerg. Infect. Dis. 21 (7), 1213 - 1216 10.3201/eid2107.141341
Zimmermann, M., Escrig, S., Hübschmann, T., Kirf, M.K., Brand, A., Inglis, R.F., Musat, N., Müller, S., Meibom, A., Ackermann, M., Schreiber, F. (2015):
Phenotypic heterogeneity in metabolic traits among single cells of a rare bacterial species in its natural environment quantified with a combination of flow cell sorting and NanoSIMS
Front. Microbiol. 6 , art. 243 10.3389/fmicb.2015.00243

to index

2014 (51)

Banitz, T., Johst, K., Wick, L.Y., Schamfuß, S., Harms, H., Frank, K. (2014):
Corrigendum: Highways versus pipelines: contributions of two fungal transport mechanisms to efficient bioremediation (vol 5, pg 211, 2013)
Environ. Microbiol. Rep. 6 (4), 414 - 414 10.1111/1758-2229.12177
Bosch, J., Lee, K.-Y., Hong, S.-F., Harnisch, F., Schröder, U., Meckenstock, R.U. (2014):
Metabolic efficiency of Geobacter sulfurreducens growing on anodes with different redox potentials
Curr. Microbiol. 68 (6), 763 - 768 10.1007/s00284-014-0539-2
Bozinovski, D., Taubert, M., Kleinsteuber, S., Richnow, H.-H., von Bergen, M., Vogt, C., Seifert, J. (2014):
Metaproteogenomic analysis of a sulfate-reducing enrichment culture reveals genomic organization of key enzymes in the m-xylene degradation pathway and metabolic activity of proteobacteria
Syst. Appl. Microbiol. 37 (7), 488 - 501 10.1016/j.syapm.2014.07.005
Brown, R.K., Harnisch, F., Wirth, S., Wahlandt, H., Dockhorn, T., Dichtl, N., Schröder, U. (2014):
Evaluating the effects of scaling up on the performance of bioelectrochemical systems using a technical scale microbial electrolysis cell
Bioresour. Technol. 163 , 206 - 213 10.1016/j.biortech.2014.04.044
Bühligen, F., Lindner, P., Fetzer, I., Stahl, F., Scheper, T., Harms, H., Müller, S. (2014):
Analysis of aging in lager brewing yeast during serial repitching
J. Biotechnol. 187 , 60 - 70 10.1016/j.jbiotec.2014.07.002
Cailleau, G., Mota, M., Bindschedler, S., Junier, P., Verrecchia, E.P. (2014):
Detection of active oxalate–carbonate pathway ecosystems in the Amazon Basin: Global implications of a natural potential C sink
Catena 116 , 132 - 141 10.1016/j.catena.2013.12.017
Dorer, C., Vogt, C., Kleinsteuber, S., Stams, A.J.M., Richnow, H.-H. (2014):
Compound-specific isotope analysis as a tool to characterize biodegradation of ethylbenzene
Environ. Sci. Technol. 48 (16), 9122 - 9132 10.1021/es500282t
Fester, T., Giebler, J., Wick, L.Y., Schlosser, D., Kästner, M. (2014):
Plant–microbe interactions as drivers of ecosystem functions relevant for the biodegradation of organic contaminants
Curr. Opin. Biotechnol. 27 , 168 - 175 10.1016/j.copbio.2014.01.017
Fester, T., Merbach, I., Schulz, E., Härtig, C. (2014):
Metabolic response of Medicago sativa to severe nutrient imbalances and disturbances under field conditions
J. Plant Nutr. Soil Sci. 177 (2), 245 - 259 10.1002/jpln.201200551
Gharasoo, M., Centler, F., Fetzer, I., Thullner, M. (2014):
How the chemotactic characteristics of bacteria can determine their population patterns
Soil Biol. Biochem. 69 , 346 - 358 /10.1016/j.soilbio.2013.11.019
Giebler, J., Wick, L.Y., Harms, H., Chatzinotas, A. (2014):
Evaluating T-RFLP protocols to sensitively analyze the genetic diversity and community changes of soil alkane degrading bacteria
Eur. J. Soil Biol. 65 , 107 - 113 10.1016/j.ejsobi.2014.10.006
Glaser, K., Kuppardt, A., Krohn, S., Heidtmann, A., Harms, H., Chatzinotas, A. (2014):
Primer pairs for the specific environmental detection and T-RFLP analysis of the ubiquitous flagellate taxa Chrysophyceae and Kinetoplastea
J. Microbiol. Methods 100 , 8 - 16 10.1016/j.mimet.2014.02.006
Gros, J., Nabi, D., Würz, B., Wick, L.Y., Brussaard, C.P.D., Huisman, J., van der Meer, J.R., Reddy, C.M., Arey, J.S. (2014):
First day of an oil spill on the open sea: Early mass transfers of hydrocarbons to air and water
Environ. Sci. Technol. 48 (16), 9400 - 9411 10.1021/es502437e
Harms, H., Junca, H. (2014):
Editorial overview: Environmental Biotechnology
Curr. Opin. Biotechnol. 27 , vii - ix 10.1016/j.copbio.2014.04.002
Heße, F., Prykhodko, V., Attinger, S., Thullner, M. (2014):
Corrigendum to “Assessment of the impact of pore-scale mass-transfer restrictions on microbially-induced stable-isotope fractionation” [ADWR 74C (2014) 79–90]
Adv. Water Resour. 74 , 329 10.1016/j.advwatres.2014.09.010
Heße, F., Prykhodko, V., Attinger, S., Thullner, M. (2014):
Assessment of the impact of pore-scale mass-transfer restrictions on microbially-induced stable-isotope fractionation
Adv. Water Resour. 74 , 79 - 90 10.1016/j.advwatres.2014.08.007
Hoffmann, P., Held, C., Maskow, T., Sadowski, G. (2014):
A thermodynamic investigation of the glucose-6-phosphate isomerization
Biophys. Chem. 195 , 22 - 31 10.1016/j.bpc.2014.08.002
Jahangiri, E., Reichelt, S., Thomas, I., Hausmann, K., Schlosser, D., Schulze, A. (2014):
Electron beam-induced immobilization of laccase on porous supports for waste water treatment applications
Molecules 19 (8), 11860 - 11882 10.3390/molecules190811860
Jahn, M., Vorpahl, C., Türkowsky, D., Lindmeyer, M., Bühler, B., Harms, H., Müller, S. (2014):
Accurate determination of plasmid copy number of flow-sorted cells using droplet digital PCR
Anal. Chem. 86 (12), 5969 - 5976 10.1021/ac501118v
Jahn, M., Vorpahl, C., Türkowsky, D., Lindmeyer, M., Bühler, B., Harms, H., Müller, S. (2014):
Population heterogeneity in Pseudomonas putida analyzed on the single cell level using proteomics and digital PCR
New Biotech. 31 (Suppl.), S58 - S59 10.1016/j.nbt.2014.05.1746
Johnke, J., Cohen, Y., de Leeuw, M., Kushmaro, A., Jurkevitch, E., Chatzinotas, A. (2014):
Multiple micro-predators controlling bacterial communities in the environment
Curr. Opin. Biotechnol. 27 , 185 - 190 10.1016/j.copbio.2014.02.003
Kallies, R., Kopp, A., Zirkel, F., Estrada, A., Gillespie, T.R., Drosten, C., Junglen, S. (2014):
Genetic characterization of Goutanap virus, a novel virus related to Negeviruses, Cileviruses and Higreviruses
Viruses 6 (11), 4346 - 4357 10.3390/v6114346
Koch, C., Harms, H., Müller, S. (2014):
Dynamics in the microbial cytome — single cell analytics in natural systems
Curr. Opin. Biotechnol. 27 , 134 - 141 10.1016/j.copbio.2014.01.011
Koch, C., Harnisch, F., Schröder, U., Müller, S. (2014):
Cytometric fingerprints: evaluation of new tools for analyzing microbial community dynamics
Front. Microbiol. 5 , art. 273 10.3389/fmicb.2014.00273
Koch, C., Müller, S., Harms, H., Harnisch, F. (2014):
Microbiomes in bioenergy production: From analysis to management
Curr. Opin. Biotechnol. 27 , 65 - 72 10.1016/j.copbio.2013.11.006
Koch, C., Popiel, D., Harnisch, F. (2014):
Functional redundancy of microbial anodes fed by domestic wastewater
ChemElectroChem 1 (11), 1923 - 1931 10.1002/celc.201402216
Krohn, S., Böhm, S., Engelmann, C., Hartmann, J., Brodzinski, A., Chatzinotas, A., Zeller, K., Prywerek, D., Fetzer, I., Berg, A. (2014):
Application of qualitative and quantitative real-time PCR, direct sequencing, and terminal restriction fragment length polymorphism analysis for detection and identification of polymicrobial 16S rRNA genes in ascites
J. Clin. Microbiol. 52 (5), 1754 - 1757 10.1128/JCM.00552-14
Kuppardt, A., Kleinsteuber, S., Vogt, C., Lüders, T., Harms, H., Chatzinotas, A. (2014):
Phylogenetic and functional diversity within toluene-degrading, sulphate-reducing consortia enriched from a contaminated aquifer
Microb. Ecol. 68 (2), 222 - 234 10.1007/s00248-014-0403-8
Lauterböck, B., Nikolausz, M., Lv, Z., Baumgartner, A., Liebhard, G., Fuchs, W. (2014):
Improvement of anaerobic digestion performance by continuous nitrogen removal with a membrane contactor treating a substrate rich in ammonia and sulfide
Bioresour. Technol. 158 , 209 - 216 10.1016/j.biortech.2014.02.012
Lentendu, G., Wubet, T., Chatzinotas, A., Wilhelm, C., Buscot, F., Schlegel, M. (2014):
Effects of long term differential fertilization on eukaryotic microbial communities in an arable soil: a multiple barcoding approach
Mol. Ecol. 23 (13), 3341 - 3355 10.1111/mec.12819
Lieder, S., Jahn, M., Seifert, J., von Bergen, M., Müller, S., Takors, R. (2014):
Subpopulation-proteomics reveal growth rate, but not cell cycling, as a major impact on protein composition in Pseudomonas putida KT2440
AMB Express 4 , art. 71 10.1186/s13568-014-0071-6
Lv, Z., Hu, M., Harms, H., Richnow, H.H., Liebetrau, J., Nikolausz, M. (2014):
Stable isotope composition of biogas allows early warning of complete process failure as a result of ammonia inhibition in anaerobic digesters
Bioresour. Technol. 167 , 251 - 259 10.1016/j.biortech.2014.06.029
Lv, Z., Leite, A.F., Harms, H., Richnow, H.H., Liebetrau, J., Nikolausz, M. (2014):
Influences of the substrate feeding regime on methanogenic activity in biogas reactors approached by molecular and stable isotope methods
Anaerobe 29 , 91 - 99 10.1016/j.anaerobe.2013.11.005
Maskow, T., Morais, F.M., Rosa, L.F.M., Qian, Y.G., Harnisch, F. (2014):
Insufficient oxygen diffusion leads to distortions of microbial growth parameters assessed by isothermal microcalorimetry
RSC Advances 4 (62), 32730 - 32737 10.1039/c4ra03921a
Morais, F.M., Buchholz, F., Hartmann, T., Lerchner, J., Neu, T.R., Kiesel, B., Harms, H., Maskow, T. (2014):
Chip-calorimetric monitoring of biofilm eradication with bacteriophages reveals an unexpected infection-related heat profile
J. Therm. Anal. Calorim. 115 (3), 2203 - 2210 10.1007/s10973-013-3494-4
Otto, B., Schlosser, D. (2014):
First laccase in green algae: purification and characterization of an extracellular phenol oxidase from Tetracystis aeria
Planta 240 (6), 1225 - 1236 10.1007/s00425-014-2144-9
Porsch, K., Rijal, M.L., Borch, T., Troyer, L.D., Behrens, S., Wehland, F., Appel, E., Kappler, A. (2014):
Impact of organic carbon and iron bioavailability on the magnetic susceptibility of soils
Geochim. Cosmochim. Acta 128 , 44 - 57 10.1016/j.gca.2013.12.001
Poser, A., Vogt, C., Knöller, K., Ahlheim, J., Weiss, H., Kleinsteuber, S., Richnow, H.-H. (2014):
Stable sulfur and oxygen isotope fractionation of anoxic sulfide oxidation by two different enzymatic pathways
Environ. Sci. Technol. 48 (16), 9094 - 9102 10.1021/es404808r
Pous, N., Koch, C., Colprim, J., Puig, S., Harnisch, F. (2014):
Extracellular electron transfer of biocathodes: Revealing the potentials for nitrate and nitrite reduction of denitrifying microbiomes dominated by Thiobacillus sp.
Electrochem. Commun. 49 , 93 - 97 10.1016/j.elecom.2014.10.011
Pradhan, A., Seena, S., Dobritzsch, D., Helm, S., Gerth, K., Dobritzsch, M., Krauss, G.-J., Schlosser, D., Pascoal, C., Cássio, F. (2014):
Physiological responses to nanoCuO in fungi from non-polluted and metal-polluted streams
Sci. Total Environ. 466–467 , 556 - 563 10.1016/j.scitotenv.2013.07.073
Salthammer, T., Harnisch, F. (2014):
Die Chemie bei Breaking Bad: Entstehung einer Publikation und ihre Resonanz
Chem. unserer Zeit 48 (4), 242 - 243 10.1002/ciuz.201490043
Schamfuß, S., Neu, T.R., Harms, H., Wick, L.Y. (2014):
A whole cell bioreporter approach to assess transport and bioavailability of organic contaminants in water unsaturated systems
J. Vis. Exp. 2014 (94), e52334 10.3791/52334
Schmidt, T., Ziganshin, A.M., Nikolausz, M., Scholwin, F., Nelles, M., Kleinsteuber, S., Pröter, J. (2014):
Effects of the reduction of the hydraulic retention time to 1.5 days at constant organic loading in CSTR, ASBR, and fixed-bed reactors - Performance and methanogenic community composition
Biomass Bioenerg. 69 , 241 - 248 10.1016/j.biombioe.2014.07.021
Shamim, S., Rehman, A. (2014):
Physicochemical surface properties of Cupriavidus metallidurans CH34 and Pseudomonas putida mt2 under cadmium stress
J. Basic Microbiol. 54 (4), 306 - 314 10.1002/jobm.201200434
Shamim, S., Rehman, A., Qazi, M.H. (2014):
Swimming, swarming, twitching, and chemotactic responses of Cupriavidus metallidurans CH34 and Pseudomonas putida mt2 in the presence of cadmium
Arch. Environ. Contam. Toxicol 66 (3), 407 - 414 10.1007/s00244-013-9966-5
Shamim, S., Rehman, A., Qazi, M.H. (2014):
Cadmium-resistance mechanism in the bacteria Cupriavidus metallidurans CH34 and Pseudomonas putida mt2
Arch. Environ. Contam. Toxicol 67 (2), 149 - 157 10.1007/s00244-014-0009-7
Singh, S., Harms, H., Schlosser, D. (2014):
Screening of ecologically diverse fungi for their potential to pretreat lignocellulosic bioenergy feedstock
Appl. Microbiol. Biotechnol. 98 (7), 3355 - 3370 10.1007/s00253-014-5563-4
Wentrup, C., Wendeberg, A., Schimak, M., Borowski, C., Dubilier, N. (2014):
Forever competent: deep-sea bivalves are colonized by their chemosynthetic symbionts throughout their lifetime
Environ. Microbiol. 16 (12), 3699 - 3713 10.1111/1462-2920.12597
Wetzel, K., Silva, G., Matczinski, U., Oehl, F., Fester, T. (2014):
Superior differentiation of arbuscular mycorrhizal fungal communities from till and no-till plots by morphological spore identification when compared to T-RFLP
Soil Biol. Biochem. 72 , 88 - 96 10.1016/j.soilbio.2014.01.033
Yoon, H., Leibeling, S., Zhang, C., Müller, R.H., Werth, C.J., Zilles, J.L. (2014):
Adaptation of Delftia acidovorans for degradation of 2,4-dichlorophenoxyacetate in a microfluidic porous medium
Biodegradation 25 (4), 595 - 604 10.1007/s10532-014-9684-3
Zhang, N., Bashir, S., Qin, J., Schindelka, J., Fischer, A., Nijenhuis, I., Herrmann, H., Wick, L.Y., Richnow, H.H. (2014):
Compound specific stable isotope analysis (CSIA) to characterize transformation mechanisms of α-hexachlorocyclohexane
J. Hazard. Mater. 280 , 750 - 757 10.1016/j.jhazmat.2014.08.046

to index

2013 (54)

Allan, E., Bossdorf, O., Dormann, C.F., Prati, D., Gossner, M.M., Tscharntke, T., Blüthgen, N., Bellach, M., Birkhofer, K., Boch, S., Böhm, S., Börschig, C., Chatzinotas, A., Christ, S., Daniel, R., Diekötter, T., Fischer, C., Friedl, T., Glaser, K., Hallmann, C., Hodac, L., Hölzel, N., Jung, K., Klein, A.M., Klaus, V.H., Kleinebecker, T., Krauss, J., Lange, M., Morris, E.K., Müller, J., Nacke, H., Pašalić, E., Rillig, M.C., Rothenwöhrer, C., Schall, P., Scherber, C., Schulze, W., Socher, S.A., Steckel, J., Steffan-Dewenter, I., Türke, M., Weiner, C.N., Werner, M., Westphal, C., Wolters, V., Wubet, T., Gockel, S., Gorke, M., Hemp, A., Renner, S.C., Schöning, I., Pfeiffer, S., König-Ries, B., Buscot, F., Linsenmair, K.E., Schulze, E.-D., Weisser, W.W., Fischer, M. (2013):
Interannual variation in land-use intensity enhances grassland multidiversity
Proc. Natl. Acad. Sci. U.S.A. 111 (1), 308 - 313 10.1073/pnas.1312213111
Banitz, T., Johst, K., Wick, L.Y., Schamfuß, S., Harms, H., Frank, K. (2013):
Highways versus pipelines: contributions of two fungal transport mechanisms to efficient bioremediation
Environ. Microbiol. Rep. 5 (2), 211 - 218 10.1111/1758-2229.12002
Beketov, M.A., Cedergreen, N., Wick, L.Y., Kattwinkel, M., Duquesne, S., Liess, M. (2013):
Sediment toxicity testing for prospective risk assessment - a new framework and how to establish it
Hum. Ecol. Risk Assess. 19 (1), 98 - 117 10.1080/10807039.2012.683741
Bravo, D., Cailleau, G., Bindschedler, S., Simon, A., Job, D., Verrecchia, E., Junier, P. (2013):
Isolation of oxalotrophic bacteria able to disperse on fungal mycelium
FEMS Microbiol. Lett. 348 (2), 157 - 166 10.1111/1574-6968.12287
Bühligen, F., Rüdinger, P., Fetzer, I., Stahl, F., Scheper, T., Harms, H., Müller, S. (2013):
Sustainability of industrial yeast serial repitching practice studied by gene expression and correlation analysis
J. Biotechnol. 168 (4), 718 - 728 10.1016/j.jbiotec.2013.09.008
Carmona-Martínez, A.A., Harnisch, F., Kuhlicke, U., Neu, T.R., Schröder, U. (2013):
Electron transfer and biofilm formation of Shewanella putrefaciens as function of anode potential
Bioelectrochemistry 93 , 23 - 29 10.1016/j.bioelechem.2012.05.002
Centler, F., Heße, F., Thullner, M. (2013):
Estimating pathway-specific contributions to biodegradation in aquifers based on dual isotope analysis: theoretical analysis and reactive transport simulations
J. Contam. Hydrol. 152 , 97 - 116 10.1016/j.jconhyd.2013.06.009
Chatzinotas, A., Schellenberger, S., Glaser, K., Kolb, S. (2013):
Assimilation of cellulose-derived carbon by microeukaryotes in oxic and anoxic slurries of an aerated soil
Appl. Environ. Microb. 79 (18), 5777 - 5781 10.1128/AEM.01598-13
De Biase, C., Carminati, A., Oswald, S.E., Thullner, M. (2013):
Numerical modeling analysis of VOC removal processes in different aerobic vertical flow systems for groundwater remediation
J. Contam. Hydrol. 154 , 53 - 69 10.1016/j.jconhyd.2013.07.007
Dennis, P.G., Harnisch, F., Yeoh, Y.K., Tyson, G.W., Rabaey, K. (2013):
Dynamics of cathode-associated microbial communities and metabolite profiles in a glycerol-fed bioelectrochemical system
Appl. Environ. Microb. 79 (13), 4008 - 4014 10.1128/AEM.00569-13
Engelmann, C., Prywerek, D., Krohn, S., Boehlig, A., Herber, A., Chatzinotas, A., Fetzer, I., Boehm, S., Berg, T. (2013):
Bacterial DNA detection in ascites fluid in cirrhotic patients: molecular characterisation and clinical impact
Hepatology 58 (S1), 866A 10.1002/hep.26866
Fester, T. (2013):
Arbuscular mycorrhizal fungi in a wetland constructed for benzene-, methyl tert-butyl ether- and ammonia-contaminated groundwater bioremediation
Microb. Biotechnol. 6 (1), 80 - 84 10.1111/j.1751-7915.2012.00357.x
Fester, T., Fetzer, I., Härtig, C. (2013):
A core set of metabolite sink/source ratios indicative for plant organ productivity in Lotus japonicus
Planta 237 (1), 145 - 160 10.1007/s00425-012-1759-y
Giebler, J., Wick, L.Y., Chatzinotas, A., Harms, H. (2013):
Alkane-degrading bacteria at the soil–litter interface: comparing isolates with T-RFLP-based community profiles
FEMS Microbiol. Ecol. 86 (1), 45 - 58 10.1111/1574-6941.12097
Giebler, J., Wick, L.Y., Schloter, M., Harms, H., Chatzinotas, A. (2013):
Evaluating the assignment of alkB terminal restriction fragments and sequence types to distinct bacterial taxa
Appl. Environ. Microb. 79 (9), 3129 - 3132 10.1128/AEM.04028-12
Gimkiewicz, C., Harnisch, F. (2013):
Waste water derived electroactive microbial biofilms: growth, maintenance, and basic characterization
J. Vis. Exp. 2013 (82), e50800 10.3791/50800
Harnisch, F., Blei, I., dos Santos, T.R., Möller, M., Nilges, P., Eilts, P., Schröder, U. (2013):
From the test-tube to the test-engine: assessing the suitability of prospective liquid biofuel compounds
RSC Advances 3 (25), 9594 - 9605 10.1039/c3ra40354h
Harnisch, F., Salthammer, T. (2013):
Die Chemie bei Breaking Bad: ein Chemiker als Serienprotagonist. Chemistry in Breaking Bad: a chemist starring a series
Chem. unserer Zeit 47 (4), 214 - 221 10.1002/ciuz.201300612
Hartmann, T., Mühling, M., Wolf, A., Mariana, F., Maskow, T., Mertens, F., Neu, T.R., Lerchner, J. (2013):
A chip-calorimetric approach to the analysis of Ag nanoparticle caused inhibition and inactivation of beads-grown bacterial biofilms
J. Microbiol. Methods 95 (2), 129 - 137 10.1016/j.mimet.2013.08.003
Jahn, M., Mölle, A., Rödel, G., Ostermann, K. (2013):
Temporal and spatial properties of a yeast multi-cellular amplification system based on signal molecule diffusion
Sensors 13 (11), 14511 - 14522 10.3390/s131114511
Jahn, M., Seifert, J., von Bergen, M., Schmid, A., Bühler, B., Müller, S. (2013):
Subpopulation-proteomics in prokaryotic populations
Curr. Opin. Biotechnol. 24 (1), 79 - 87 10.1016/j.copbio.2012.10.017
Koch, C., Fetzer, I., Harms, H., Müller, S. (2013):
CHIC—an automated approach for the detection of dynamic variations in complex microbial communities
Cytom. Part A 83 (6), 561 - 567 10.1002/cyto.a.22286
Koch, C., Fetzer, I., Schmidt, T., Harms, H., Müller, S. (2013):
Monitoring functions in managed microbial systems by cytometric bar coding
Environ. Sci. Technol. 47 (3), 1753 - 1760 10.1021/es3041048
Koch, C., Günther, S., Desta, A.F., Hübschmann, T., Müller, S. (2013):
Cytometric fingerprinting for analyzing microbial intracommunity structure variation and identifying subcommunity function
Nat. Protoc. 8 (1), 190 - 202 10.1038/nprot.2012.149
Kruger, M.C., Bertin, P.N., Heipieper, H.J., Arsène-Ploetze, F. (2013):
Bacterial metabolism of environmental arsenic—mechanisms and biotechnological applications
Appl. Microbiol. Biotechnol. 97 (9), 3827 - 3841 10.1007/s00253-013-4838-5
Leibeling, S., Maeß, M.B., Centler, F., Kleinsteuber, S., von Bergen, M., Thullner, M., Harms, H., Müller, R.H. (2013):
Posttranslational oxidative modification of (R)-2-(2,4-dichlorophenoxy)propionate/α-ketoglutarate-dependent dioxygenases (RdpA) leads to improved degradation of 2,4-dichlorophenoxyacetate (2,4-D)
Eng. Life Sci. 13 (3), 278 - 291 10.1002/elsc.201100093
Lentendu, G., Hübschmann, T., Müller, S., Dunker, S., Buscot, F., Wilhelm, C. (2013):
Recovery of soil unicellular eukaryotes: an efficiency and activity analysis on the single cell level
J. Microbiol. Methods 95 (3), 463 - 469 10.1016/j.mimet.2013.05.006
Mariana, F., Buchholz, F., Lerchner, J., Neu, T.R., Harms, H., Maskow, T. (2013):
Chip-calorimetric monitoring of biofilm eradication with antibiotics provides mechanistic information
Int. J. Med. Microbiol. 303 (3), 158 - 165 10.1016/j.ijmm.2012.12.009
Maskow, T. (2013):
Calorimetry and biothermodynamics for biotechnology, medicine and environmental sciences: current status and advances
Eng. Life Sci. 13 (6), 508 - 509 10.1002/elsc.201370064
Mehlig, L., Petzold, M., Heder, C., Günther, S., Müller, S., Eschenhagen, M., Röske, I., Röske, K. (2013):
Biodiversity of polyphosphate accumulating bacteria in eight WWTPs with different modes of operation
J. Environ. Eng.-ASCE 139 (8), 1089 - 1098 10.1061/(ASCE)EE.1943-7870.0000711
Möller, M., Harnisch, F., Schröder, U. (2013):
Hydrothermal liquefaction of cellulose in subcritical water—the role of crystallinity on the cellulose reactivity
RSC Advances 3 (27), 11035 - 11044 10.1039/c3ra41582a
Müller, S., Hiller, K. (2013):
From multi-omics to basic structures of biological systems
Curr. Opin. Biotechnol. 24 (1), 1 - 3 10.1016/j.copbio.2012.12.002
Naether, D., Slawtschew, S., Stasik, S., Engel, M., Olzog, M., Wick, L.Y., Timmis, K.N., Heipieper, H.J. (2013):
Adaptation of hydrocarbonoclastic Alcanivorax borkumensis SK2 to alkanes and toxic organic compounds - a physiological and transcriptomic approach
Appl. Environ. Microb. 79 (14), 4282 - 4293 10.1128/AEM.00694-13
Neumeyer, A., Hübschmann, T., Müller, S., Frunzke, J. (2013):
Monitoring of population dynamics of Corynebacterium glutamicum by multiparameter flow cytometry
Microb. Biotechnol. 6 (2), 157 - 167 10.1111/1751-7915.12018
Nick, H.M., Raoof, A., Centler, F., Thullner, M., Regnier, P. (2013):
Reactive dispersive contaminant transport in coastal aquifers: Numerical simulation of a reactive Henry problem
J. Contam. Hydrol. 145 , 90 - 104 10.1016/j.jconhyd.2012.12.005
Nikolausz, M., Walter, R.F.H., Sträuber, H., Liebetrau, J., Schmidt, T., Kleinsteuber, S., Bratfisch, F., Günther, U., Richnow, H.H. (2013):
Evaluation of stable isotope fingerprinting techniques for the assessment of the predominant methanogenic pathways in anaerobic digesters
Appl. Microbiol. Biotechnol. 97 (5), 2251 - 2262 10.1007/s00253-012-4657-0
Paufler, S., Weichler, M.-T., Harms, H., Maskow, T. (2013):
Simple improvement of the sensitivity of a heat flux reaction calorimeter to monitor bioprocesses with weak heat production
Thermochim. Acta 569 , 71 - 77 10.1016/j.tca.2013.07.001
Perner, M., Petersen, J.M., Zielinski, F., Gennerich, H.H., Seifert, R. (2013):
Geochemical constraints on the diversity and activity of H2-oxidizing microorganisms in diffuse hydrothermal fluids from a basalt- and an ultramafic-hosted vent
FEMS Microbiol. Ecol. 85 (1), 210 - 210 10.1111/1574-6941.12147
Pion, M., Bshary, R., Bindschedler, S., Filippidou, S., Wick, L.Y., Job, D., Junier, P. (2013):
Gains of bacterial flagellar motility in a fungal world
Appl. Environ. Microb. 79 (22), 6862 - 6867 10.1128/AEM.01393-13
Pion, M., Spangenberg, J.E., Simon, A., Bindschedler, S., Flury, C., Chatelain, A., Bshary, R., Job, D., Junier, P. (2013):
Bacterial farming by the fungus Morchella crassipes
Proc. R. Soc. B-Biol. Sci. 280 (1773), art. 20132242 10.1098/rspb.2013.2242
Przybylski, D., Rohwerder, T., Harms, H., Yaneva, N., Müller, R.H. (2013):
Synthesis of the building block 2-hydroxyisobutyrate from fructose and butyrate by Cupriavidus necator H16
Appl. Microbiol. Biotechnol. 97 (20), 8875 - 8885 10.1007/s00253-013-5064-x
Regestein, L., Maskow, T., Tack, A., Knabben, I., Wunderlich, M., Lerchner, J., Büchs, J. (2013):
Non-invasive online detection of microbial lysine formation in stirred tank bioreactors by using calorespirometry
Biotechnol. Bioeng. 110 (5), 1386 - 1395 10.1002/bit.24815
Regnier, P., Friedlingstein, P., Ciais, P., Mackenzie, F.T., Gruber, N., Janssens, I.A., Laruelle, G.G., Lauerwald, R., Luyssaert, S., Andersson, A.J., Arndt, S., Arnosti, C., Borges, A.V., Dale, A.W., Gallego-Sala, A., Goddéris, Y., Goossens, N., Hartmann, J., Heinze, C., Ilyina, T., Joos, F., LaRowe, D.E., Leifeld, J., Meysman, F.J.R., Munhoven, G., Raymond, P.A., Spahni, R., Suntharalingam, P., Thullner, M. (2013):
Anthropogenic perturbation of the carbon fluxes from land to ocean
Nat. Geosci. 6 (8), 597 - 606 10.1038/ngeo1830
Ricken, B., Corvini, P.F.X., Cichocka, D., Parisi, M., Lenz, M., Wyss, D., Martínez-Lavanchy, P.M., Müller, J.A., Shahgaldian, P., Tulli, L.G., Kohler, H.-P.E., Kolvenbach, B.A. (2013):
ipso-hydroxylation and subsequent fragmentation: a novel microbial strategy to eliminate sulfonamide antibiotics
Appl. Environ. Microb. 79 (18), 5550 - 5558 10.1128/AEM.00911-13
Rohwerder, T., Müller, R.H., Weichler, M.T., Schuster, J., Hübschmann, T., Müller, S., Harms, H. (2013):
Cultivation of Aquincola tertiaricarbonis L108 on the fuel oxygenate intermediate tert-butyl alcohol induces aerobic anoxygenic photosynthesis at extremely low feeding rates
Microbiology-(UK) 159 (10), 2180 - 2190 10.1099/mic.0.068957-0
Saleem, M., Fetzer, I., Harms, H., Chatzinotas, A. (2013):
Diversity of protists and bacteria determines predation performance and stability
ISME J. 7 (10), 1912 - 1921 10.1038/ismej.2013.95
Schamfuß, S., Neu, T.R., van der Meer, J.R., Tecon, R., Harms, H., Wick, L.Y. (2013):
Impact of mycelia on the accessibility of fluorene to PAH-degrading bacteria
Environ. Sci. Technol. 47 (13), 6908 - 6915 10.1021/es304378d
Schuster, J., Purswani, J., Breuer, U., Pozo, C., Harms, H., Müller, R.H., Rohwerder, T. (2013):
Constitutive expression of the cytochrome P450 EthABCD monooxygenase system enables degradation of synthetic dialkyl ethers in aquincola tertiaricarbonis L108
Appl. Environ. Microb. 79 (7), 2321 - 2327 10.1128/AEM.03348-12
Thullner, M., Fischer, A., Richnow, H.-H., Wick, L.Y. (2013):
Influence of mass transfer on stable isotope fractionation
Appl. Microbiol. Biotechnol. 97 (2), 441 - 452 10.1007/s00253-012-4537-7
Tischer, K., Kleinsteuber, S., Schleinitz, K.M., Fetzer, I., Spott, O., Stange, F., Lohse, U., Franz, J., Neumann, F., Gerling, S., Schmidt, C., Hasselwander, E., Harms, H., Wendeberg, A. (2013):
Microbial communities along biogeochemical gradients in a hydrocarbon-contaminated aquifer
Environ. Microbiol. 15 (9), 2603 - 2615 10.1111/1462-2920.12168
Vogel, A., Fester, T., Eisenhauer, N., Scherer-Lorenzen, M., Schmid, B., Weisser, W.W., Weigelt, A. (2013):
Separating drought effects from roof artifacts on ecosystem processes in a grassland drought experiment
PLOS One 8 (8), e70997 10.1371/journal.pone.0070997
Wagner, A., Segler, L., Kleinsteuber, S., Sawers, G., Smidt, H., Lechner, U. (2013):
Regulation of reductive dehalogenase gene transcription in Dehalococcoides mccartyi
Philos. Trans. R. Soc. B-Biol. Sci. 368 (1616), art. 20120317 10.1098/rstb.2012.0317
Wentrup, C., Wendeberg, A., Huang, J.Y., Borowski, C., Dubilier, N. (2013):
Shift from widespread symbiont infection of host tissues to specific colonization of gills in juvenile deep-sea mussels
ISME J. 7 (6), 1244 - 1247 10.1038/ismej.2013.5
Ziganshin, A.M., Liebetrau, J., Pröter, J., Kleinsteuber, S. (2013):
Microbial community structure and dynamics during anaerobic digestion of various agricultural waste materials
Appl. Microbiol. Biotechnol. 97 (11), 5161 - 5174 10.1007/s00253-013-4867-0

to index

2012 (38)

Banitz, T., Johst, K., Wick, L.Y., Fetzer, I., Harms, H., Frank, K. (2012):
The relevance of conditional dispersal for bacterial colony growth and biodegradation
Microb. Ecol. 63 (2), 339 - 347 10.1007/s00248-011-9927-3
Baumgarten, T., Sperling, S., Seifert, J., von Bergen, M., Steiniger, F., Wick, L.Y., Heipieper, H.J. (2012):
Membrane vesicle formation as a multiple-stress response mechanism enhances Pseudomonas putida DOT-T1E cell surface hydrophobicity and biofilm formation
Appl. Environ. Microb. 78 (17), 6217 - 6224 10.1128/AEM.01525-12
Baumgarten, T., Vazquez, J.R., Bastisch, C., Veron, W., Feuilloley, M.G.J., Nietzsche, S., Wick, L.Y., Heipieper, H.J. (2012):
Alkanols and chlorophenols cause different physiological adaptive responses on the level of cell surface properties and membrane vesicle formation in Pseudomonas putida DOT-T1E
Appl. Microbiol. Biotechnol. 93 (2), 837 - 845 10.1007/s00253-011-3442-9
Buchholz, F., Lerchner, J., Mariana, F., Kuhlicke, U., Neu, T.R., Harms, H., Maskow, T. (2012):
Chip-calorimetry provides real time insights into the inactivation of biofilms by predatory bacteria
Biofouling 28 (3), 351 - 362 10.1080/08927014.2012.673593
Czekalski, N., Berthold, T., Caucci, S., Egli, A., Bürgmann, H. (2012):
Increased levels of multiresistant bacteria and resistance genes after wastewater treatment and their dissemination into Lake Geneva, Switzerland
Front. Microbiol. 3 , art. 106 10.3389/fmicb.2012.00106
De Biase, C., Maier, U., Baeder-Bederski, O., Bayer, P., Oswald, S., Thullner, M. (2012):
Removal of volatile organic compounds in vertical flow filters: predictions from reactive transport modeling
Ground Water Monit. Remediat. 32 (2), 106 - 121 10.1111/j.1745-6592.2011.01374.x
Donose, B.C., Harnisch, F., Taran, E. (2012):
Electrochemically produced hydrogen bubbleprobes for gas evolution kinetics and force spectroscopy
Electrochem. Commun. 24 , 21 - 24 10.1016/j.elecom.2012.08.009
Flach, K., Hilbrich, I., Schiffmann, A., Gärtner, U., Krüger, M., Leonhardt, M., Waschipky, H., Wick, L., Arendt, T., Holzer, M. (2012):
Tau oligomers impair artificial membrane integrity and cellular viability
J. Biol. Chem. 287 (52), 43223 - 43233 10.1074/jbc.M112.396176
Furuno, S., Foss, S., Wild, E., Jones, K.C., Semple, K.T., Harms, H., Wick, L.Y. (2012):
Mycelia promote active transport and spatial dispersion of polycyclic aromatic hydrocarbons
Environ. Sci. Technol. 46 (10), 5463 - 5470 10.1021/es300810b
Furuno, S., Remer, R., Chatzinotas, A., Harms, H., Wick, L.Y. (2012):
Use of mycelia as paths for the isolation of contaminant-degrading bacteria from soil
Microb. Biotechnol. 5 (1), 142 - 148 10.1111/j.1751-7915.2011.00309.x
Gharasoo, M., Centler, F., Regnier, P., Harms, H., Thullner, M. (2012):
A reactive transport modeling approach to simulate biogeochemical processes in pore structures with pore-scale heterogeneities
Environ. Modell. Softw. 30 (1), 102 - 114 10.1016/j.envsoft.2011.10.010
Günther, S., Koch, C., Hübschmann, T., Röske, I., Müller, R., Bley, T., Harms, H., Müller, S. (2012):
Correlation of community dynamics and process parameters as a tool for the prediction of the stability of wastewater treatment
Environ. Sci. Technol. 46 (1), 84 - 92 10.1021/es2010682
Hanzel, J., Thullner, M., Harms, H., Wick, L.Y. (2012):
Walking the tightrope of bioavailability: growth dynamics of PAH degraders on vapour-phase PAH
Microb. Biotechnol. 5 (1), 79 - 86 10.1111/j.1751-7915.2011.00300.x
Hommes, G., Gasser, C.A., Howald, C.B.C., Goers, R., Schlosser, D., Shahgaldian, P., Corvini, P.F.-X. (2012):
Production of a robust nanobiocatalyst for municipal wastewater treatment
Bioresour. Technol. 115 (July 2012), 8 - 15 10.1016/j.biortech.2011.11.129
Jimenez-Sanchez, C., Wick, L.Y., Ortega-Calvo, J.-J. (2012):
Chemical effectors cause different motile behavior and deposition of bacteria in porous media
Environ. Sci. Technol. 46 (12), 6790 - 6797 10.1021/es300642n
Junghanns, C., Neumann, J.F., Schlosser, D. (2012):
Application of the aquatic fungus Phoma sp. (DSM22425) in bioreactors for the treatment of textile dye model effluents
J. Chem. Technol. Biotechnol. 87 (9), 1276 - 1283 10.1002/jctb.3797
Kalbacher, T., Delfs, J.-O., Shao, H., Wang, W., Walther, M., Samaniego, L., Schneider, C., Kumar, R., Musolff, A., Centler, F., Sun, F., Hildebrandt, A., Liedl, R., Borchardt, D., Krebs, P., Kolditz, O. (2012):
The IWAS-ToolBox: software coupling for an integrated water resources management
Environ. Earth Sci. 65 (5), 1367 - 1380 10.1007/s12665-011-1270-y
Kleinsteuber, S., Schleinitz, K.M., Vogt, C. (2012):
Key players and team play: anaerobic microbial communities in hydrocarbon-contaminated aquifers
Appl. Microbiol. Biotechnol. 94 (4), 851 - 873 10.1007/s00253-012-4025-0
Krohn, S., Hartmann, J., Brodzinski, A., Chatzinotas, A., Böhm, S., Berg, T. (2012):
Identification of polybacterial 16S RRNA genes from ascitic fluids with T-RFLP analysis and direct sequencing
J. Hepatol. 56 (Suppl. 2), S266 - S266 10.1016/S0168-8278(12)60685-0
Libardi jr., N., Gern, R.M.M., Furlan, S.A., Schlosser, D. (2012):
Laccase production by the aquatic ascomycete Phoma sp. UHH 5-1-03 and the white rot basidiomycete Pleurotus ostreatus DSM 1833 during submerged cultivation on banana peels and enzyme applicability for the removal of endocrine-disrupting chemicals
Appl. Biochem. Biotechnol. 167 (5), 1144 - 1156 10.1007/s12010-012-9601-3
Maskow, T., Wolf, K., Kunze, W., Enders, S., Harms, H. (2012):
Rapid analysis of bacterial contamination of tap water using isothermal calorimetry
Thermochim. Acta 543 , 273 - 280 10.1016/j.tca.2012.06.002
Müller, S., Hübschmann, T., Kleinsteuber, S., Vogt, C. (2012):
High resolution single cell analytics to follow microbial community dynamics in anaerobic ecosystems
Methods 57 (3), 338 - 349 10.1016/j.ymeth.2012.04.001
Regestein, L., Wolf, A., Schneider, H.-J., Maskow, T., Mertens, F., Büchs, J., Lerchner, J. (2012):
A chip calorimeter for the monitoring of conventional bioreactors at elevated cell concentrations
Thermochim. Acta 544 , 10 - 16 10.1016/j.tca.2012.06.004
Reinhold, A., Westermann, M., Seifert, J., von Bergen, M., Schubert, T., Diekert, G. (2012):
Impact of vitamin B₁₂ on the formation of the tetrachloroethene reductive dehalogenase in Desulfitobacterium hafniense strain Y51
Appl. Environ. Microb. 78 (22), 8025 - 8032 10.1128/AEM.02173-12
Rosell, M., Gonzalez-Olmos, R., Rohwerder, T., Rusevova, K., Georgi, A., Kopinke, F.-D., Richnow, H.H. (2012):
Critical evaluation of the 2D-CSIA scheme for distinguishing fuel oxygenate degradation reaction mechanisms
Environ. Sci. Technol. 46 (9), 4757 - 4766 10.1021/es2036543
Saleem, M., Fetzer, I., Dormann, C.F., Harms, H., Chatzinotas, A. (2012):
Predator richness increases the effect of prey diversity on prey yield
Nat. Commun. 3 , art. 1305 10.1038/ncomms2287
Schäfer, F., Schuster, J., Würz, B., Härtig, C., Harms, H., Müller, R.H., Rohwerder, T. (2012):
Synthesis of short-chain diols and unsaturated alcohols from secondary alcohol substrates by the Rieske nonheme mononuclear iron oxygenase MdpJ
Appl. Environ. Microb. 78 (17), 6280 - 6284 10.1128/AEM.01434-12
Schulz, S., Giebler, J., Chatzinotas, A., Wick, L.Y., Fetzer, I., Welzl, G., Harms, H., Schloter, M. (2012):
Plant litter and soil type drive abundance, activity and community structure of alkB harbouring microbes in different soil compartments
ISME J. 6 (9), 1763 - 1774 10.1038/ismej.2012.17
Schulz, S., Yuyunkina, T., Pagel, H., Wick, L.Y., Poll, C., Streck, T., Kandeler, E., Schloter, M. (2012):
The influence of the herbicide 2-methyl-4-chlorophenoxyacetic acid (MCPA) on the mineralization of litter-derived alkanes and the abundance of the alkane monooxygenase gene (alkB) in the detritusphere of Pisum sativum (L.)
Biol. Fert. Soils 48 (8), 933 - 940 10.1007/s00374-012-0685-2
Schuster, J., Schäfer, F., Hübler, N., Brandt, A., Rosell, M., Härtig, C., Harms, H., Müller, R.H., Rohwerder, T. (2012):
Bacterial degradation of tert-amyl alcohol proceeds via hemiterpene 2-methyl-3-buten-2-ol by employing the tertiary alcohol desaturase function of the Rieske nonheme mononuclear iron oxygenase MdpJ
J. Bacteriol. 194 (5), 972 - 981 10.1128/JB.06384-11
Siegfried, K., Endes, C., Bhuiyan, A.F.M.K., Kuppardt, A., Mattusch, J., van der Meer, J.R., Chatzinotas, A., Harms, H. (2012):
Field testing of arsenic in groundwater samples of Bangladesh using a test kit based on lyophilized bioreporter bacteria
Environ. Sci. Technol. 46 (6), 3281 - 3287 10.1021/es203511k
Solé, M., Müller, I., Pecyna, M.J., Fetzer, I., Harms, H., Schlosser, D. (2012):
Differential regulation by organic compounds and heavy metals of multiple laccase genes in the aquatic hyphomycete Clavariopsis aquatica
Appl. Environ. Microb. 78 (13), 4732 - 4739 10.1128/AEM.00635-12
Stolpovsky, K., Gharasoo, M., Thullner, M. (2012):
The impact of pore-size heterogeneities on the spatiotemporal variation of microbial metabolic activity in porous media
Soil Sci. 177 (2), 98 - 110 10.1097/SS.0b013e318241105d
Taubert, M., Vogt, C., Wubet, T., Kleinsteuber, S., Tarkka, M.T., Harms, H., Buscot, F., Richnow, H.-H., von Bergen, M., Seifert, J. (2012):
Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium
ISME J. 6 (12), 2291 - 2301 10.1038/ismej.2012.68
Thullner, M., Centler, F., Richnow, H.-H., Fischer, A. (2012):
Quantification of organic pollutant degradation in contaminated aquifers using compound specific stable isotope analysis – Review of recent developments
Org. Geochem. 42 (12), 1440 - 1460 10.1016/j.orggeochem.2011.10.011
Tischer, K., Zeder, M., Klug, R., Pernthaler, J., Schattenhofer, M., Harms, H., Wendeberg, A. (2012):
Fluorescence in situ hybridization (CARD-FISH) of microorganisms in hydrocarbon contaminated aquifer sediment samples
Syst. Appl. Microbiol. 35 (8), 526 - 532 10.1016/j.syapm.2012.01.004
Wendeberg, A., Zielinski, F.U., Borowski, C., Dubilier, N. (2012):
Expression patterns of mRNAs for methanotrophy and thiotrophy in symbionts of the hydrothermal vent mussel Bathymodiolus puteoserpentis
ISME J. 6 (1), 104 - 112 10.1038/ismej.2011.81
Yaneva, N., Schuster, J., Schäfer, F., Lede, V., Przybylski, D., Paproth, T., Harms, H., Müller, R.H., Rohwerder, T. (2012):
Bacterial acyl-CoA mutase specifically catalyzes coenzyme B₁₂-dependent isomerization of 2-hydroxyisobutyryl-CoA and (S)-3-hydroxybutyryl-CoA
J. Biol. Chem. 287 (19), 15502 - 15511 10.1074/jbc.M111.314690

to index

2011 (35)

Banitz, T., Fetzer, I., Johst, K., Wick, L.Y., Harms, H., Frank, K. (2011):
Assessing biodegradation benefits from dispersal networks
Ecol. Model. 222 (14), 2552 - 2560 10.1016/j.ecolmodel.2010.07.005
Banitz, T., Wick, L.Y., Fetzer, I., Frank, K., Harms, H., Johst, K. (2011):
Dispersal networks for enhancing bacterial degradation in heterogeneous environments
Environ. Pollut. 159 (10), 2781 - 2788 10.1016/j.envpol.2011.05.008
Centler, F., Fetzer, I., Thullner, M. (2011):
Modeling population patterns of chemotactic bacteria in homogenous porous media
J. Theor. Biol. 287 , 82 - 91 10.1016/j.jtbi.2011.07.024
Ciudad, G., Reyes, I., Azócar, L., Briones, R., Jorquera, M., Wick, L.Y., Navia, R. (2011):
Innovative approaches for effective selection of lipase-producing microorganisms as whole cell catalysts for biodiesel production
New Biotech. 28 (4), 375 - 381 10.1016/j.nbt.2011.03.009
Ciudad, G., Reyes, I., Jorquera, M.A., Azócar, L., Wick, L.Y., Navia, R. (2011):
Novel three-phase bioreactor concept for fatty acid alkyl ester production using R. oryzae as whole cell catalyst
World J. Microbiol. Biotechnol. 27 (11), 2505 - 2512 10.1007/s11274-011-0719-1
De Biase, C., Reger, D., Schmidt, A., Jechalke, S., Reiche, N., Martínez-Lavanchy, P.M., Rosell, M., van Afferden, M., Maier, U., Oswald, S.E., Thullner, M. (2011):
Treatment of volatile organic contaminants in a vertical flow filter: relevance of different removal processes
Ecol. Eng. 37 (9), 1292 - 1303 10.1016/j.ecoleng.2011.03.023
Fester, T., Fetzer, I., Buchert, S., Lucas, R., Rillig, M., Härtig, C. (2011):
Towards a systemic metabolic signature of the arbuscular mycorrhizal interaction
Oecologia 167 (4), 913 - 924 10.1007/s00442-011-2037-6
Fester, T., Sawers, R. (2011):
Progress and challenges in agricultural applications of arbuscular mycorrhizal fungi
Crit. Rev. Plant Sci. 30 (5), 459 - 470 10.1080/07352689.2011.605741
Girardi, C., Greve, J., Lamshöft, M., Fetzer, I., Miltner, A., Schäffer, A., Kästner, M. (2011):
Biodegradation of ciprofloxacin in water and soil and its effects on the microbial communities
J. Hazard. Mater. 198 , 22 - 30 10.1016/j.jhazmat.2011.10.004
Gröbe, G., Ullrich, R., Pecyna, M.J., Kapturska, D., Friedrich, S., Hofrichter, M., Scheibner, K. (2011):
High-yield production of aromatic peroxygenase by the agaric fungus Marasmius rotula
AMB Express 1 , art. 31 10.1186/2191-0855-1-31
Hahn-Tomer, S. (2011):
ARSOlux® – Biosensor basierend auf Bioreporter-Bakterien zur Detektion von Arsen im Trinkwasser. It introduces itself ARSOlux (R) - Biosensor based on a bioreporter bacteria for the detection of arsenic in drinking water
Grundwasser 16 (2), 133 - 134 10.1007/s00767-011-0168-7
Hanzel, J., Thullner, M., Harms, H., Wick, L.Y. (2011):
Microbial growth with vapor-phase substrate
Environ. Pollut. 159 (4), 858 - 864 10.1016/j.envpol.2010.12.032
Harms, H., Schlosser, D., Wick, L.Y. (2011):
Untapped potential: exploiting fungi in bioremediation of hazardous chemicals
Nat. Rev. Microbiol. 9 (3), 177 - 192 10.1038/nrmocro2519
Harnisch, F., Koch, C., Patil, S.A., Hübschmann, T., Müller, S., Schröder, U. (2011):
Revealing the electrochemically driven selection in natural community derived microbial biofilms using flow-cytometry
Energy Environ. Sci. (4), 1265 - 1267 10.1039/c0ee00605j
Jechalke, S., Rosell, M., Martínez-Lavanchy, P.M., Pérez-Leiva, P., Rohwerder, T., Vogt, C., Richnow, H.H. (2011):
Linking low-level stable isotope fractionation to expression of the cytochrome P450 monooxygenase-encoding ethB gene for elucidation of methyl tert-butyl ether biodegradation in aerated treatment pond systems
Appl. Environ. Microb. 77 (3), 1086 - 1096 10.1128/AEM.01698-10
Krauss, G.-J., Solé, M., Krauss, G., Schlosser, D., Wesenberg, D., Bärlocher, F. (2011):
Fungi in freshwaters: ecology, physiology and biochemical potential
FEMS Microbiol. Rev. 35 (4), 620 - 651 10.1111/j.1574-6976.2011.00266.x
Macherius, A., Kuschk, P., Haertig, C., Moeder, M., Shtemenko, N.I., Bayona, A.H., Heredia Guerrero, J.A., Gey, M. (2011):
Composition changes in the cuticular surface lipids of the helophytes Phragmites australis and Juncus effusus as result of pollutant exposure
Environ. Sci. Pollut. Res. 18 (5), 727 - 733 10.1007/s11356-010-0416-x
Martínez-Lavanchy, P.M., Dohrmann, A.B., Imfeld, G., Trescher, K., Tebbe, C.C., Richnow, H.-H., Nijenhuis, I. (2011):
Detection of monochlorobenzene metabolizing bacteria under anoxic conditions by DNA-stable isotope probing
Biodegradation 22 (5), 973 - 982 10.1007/s10532-011-9456-2
Maskow, T., Schubert, T., Wolf, A., Buchholz, F., Regestein, L., Buechs, J., Mertens, F., Harms, H., Lerchner, J. (2011):
Potentials and limitations of miniaturized calorimeters for bioprocess monitoring
Appl. Microbiol. Biotechnol. 92 (1), 55 - 66 10.1007/s00253-011-3497-7
Oroszi, S., Jakob, T., Wilhelm, C., Harms, H., Maskow, T. (2011):
Photosynthetic energy conversion in the diatom Phaeodactylum tricornutum. Measuring by calorimetry, oxygen evolution and pulse-amplitude modulated fluorescence
J. Therm. Anal. Calorim. 104 (1), 223 - 231 10.1007/s10973-011-1358-3
Patil, S.A., Harnisch, F., Koch, C., Hübschmann, T., Fetzer, I., Carmona-Martínez, A.A., Müller, S., Schröder, U. (2011):
Electroactive mixed culture derived biofilms in microbial bioelectrochemical systems: the role of pH on biofilm formation, performance and composition
Bioresour. Technol. 102 (20), 9683 - 9690 10.1016/j.biortech.2011.07.087
Petersen, J.M., Zielinski, F.U., Pape, T., Seifert, R., Moraru, C., Amann, R., Hourdez, S., Girguis, P.R., Wankel, S.D., Barbe, V., Pelletier, E., Fink, D., Borowski, C., Bach, W., Dubilier, N. (2011):
Hydrogen is an energy source for hydrothermal vent symbioses
Nature 476 (7359), 176 - 180 10.1038/nature10325
Rakoczy, J., Schleinitz, K.M., Müller, N., Richnow, H.H., Vogt, C. (2011):
Effects of hydrogen and acetate on benzene mineralisation under sulphate-reducing conditions
FEMS Microbiol. Ecol. 77 (2), 238 - 247 10.1111/j.1574-6941.2011.01101.x
Sander, S.G., Hunter, K.A., Harms, H., Wells, M. (2011):
Numerical approach to speciation and estimation of parameters used in modeling trace metal bioavailability
Environ. Sci. Technol. 45 (15), 6388 - 6395 10.1021/es200113v
Schäfer, F., Muzica, L., Schuster, J., Treuter, N., Rosell, M., Harms, H., Müller, R.H., Rohwerder, T. (2011):
Formation of alkenes via degradation of tert-alkyl ethers and alcohols by Aquincola tertiaricarbonis L108 and Methylibium spp.
Appl. Environ. Microb. 77 (17), 5981 - 5987 10.1128/AEM.00093-11
Schattenhofer, M., Wulf, J., Kostadinov, I., Glöckner, F.O., Zubkov, M.V., Fuchs, B.M. (2011):
Phylogenetic characterisation of picoplanktonic populations with high and low nucleic acid content in the North Atlantic Ocean
Syst. Appl. Microbiol. 34 (6), 470 - 475 10.1016/j.syapm.2011.01.008
Schäwe, R., Fetzer, I., Tönniges, A., Härtig, C., Geyer, W., Harms, H., Chatzinotas, A. (2011):
Evaluation of FT-IR spectroscopy as a tool to quantify bacteria in binary mixed cultures
J. Microbiol. Methods 86 (2), 182 - 187 10.1016/j.mimet.2011.05.001
Smith, K.E.C., Thullner, M., Wick, L.Y., Harms, H. (2011):
Dissolved organic carbon enhances the mass transfer of hydrophobic organic compounds from nonaqueous phase liquids (NAPLs) into the aqueous phase
Environ. Sci. Technol. 45 (20), 8741 - 8747 10.1021/es202983k
Stolpovsky, K., Martínez-Lavanchy, P.M., Heipieper, H.J., van Cappellen, P., Thullner, M. (2011):
Incorporating dormancy in dynamic microbial community models
Ecol. Model. 222 (17), 3092 - 3102 10.1016/j.ecolmodel.2011.07.006
Trutnau, M., Petzold, M., Mehlig, L., Eschenhagen, M., Geipel, K., Müller, S., Bley, T., Röske, I. (2011):
Using a carbon-based ASM3 EAWAG Bio-P for modelling the enhanced biological phosphorus removal in anaerobic/aerobic activated sludge systems
Bioprocess. Biosyst. Eng. 34 (3), 287 - 295 10.1007/s00449-010-0470-2
Valet, G., Endl, E., Müller, S. (2011):
20 years of the German Society for Cytometry: past and future concepts
Cytom. Part A 79A (11), 891 - 893 10.1002/cyto.a.21141
van Afferden, M., Rahman, K.Z., Mosig, P., De Biase, C., Thullner, M., Oswalt, P., Müller, R.A. (2011):
Remediation of groundwater contaminated with MTBE and benzene: the potential of vertical-flow soil filter systems
Water Res. 45 (16), 5063 - 5074 10.1016/j.watres.2011.07.010
Vogt, C., Kleinsteuber, S., Richnow, H.H. (2011):
Anaerobic benzene degradation by bacteria
Microb. Biotechnol. 4 (6), 710 - 724 10.1111/j.1751-7915.2011.00260.x
Zielinski, F., Gennerich, H.H., Borowski, C., Wenzhöfer, F., Dubilier, N. (2011):
In situ measurements of hydrogen sulfide, oxygen, and temperature in diffuse fluids of an ultramafic-hosted hydrothermal vent field (Logatchev, 14°45'N, Mid-Atlantic Ridge): implications for chemosymbiotic bathymodiolin mussels
Geochem. Geophys. Geosyst. 12 (9), 1 - 21 10.1029/2011GC003632
Ziganshin, A.M., Schmidt, T., Scholwin, F., Il'inskaya, O.N., Harms, H., Kleinsteuber, S. (2011):
Bacteria and archaea involved in anaerobic digestion of distillers grains with solubles
Appl. Microbiol. Biotechnol. 89 (6), 2039 - 2052 10.1007/s00253-010-2981-9

to index

2010 (50)

Bombach, P., Chatzinotas, A., Neu, T.R., Kästner, M., Lueders, T., Vogt, C. (2010):
Enrichment and characterization of a sulfate-reducing toluene-degrading microbial consortium by combining in situ microcosms and stable isotope probing techniques
FEMS Microbiol. Ecol. 71 (2), 237 - 246 10.1111/j.1574-6941.2009.00809.X
Buchholz, F., Harms, H., Maskow, T. (2010):
Biofilm research using calorimetry - a marriage made in heaven?
Biotechnol. J. 5 (12), 1339 - 1350 10.1002/biot.201000287
Buchholz, F., Wolf, A., Lerchner, J., Mertens, F., Harms, H., Maskow, T. (2010):
Chip calorimetry for fast and reliable evaluation of bactericidal and bacteriostatic treatments of biofilms
Antimicrob. Agents Chemother. 54 (1), 312 - 319 10.1128/AAC.00583-09
Centler, F., Kaleta, C., Speroni di Fenizio, P., Dittrich, P. (2010):
A parallel algorithm to compute chemical organizations in biological networks
Bioinformatics 26 (14), 1788 - 1789 10.1093/bioinformatics/btq263
Centler, F., Shao, H., De Biase, C., Park, C.-H., Regnier, P., Kolditz, O., Thullner, M. (2010):
GeoSysBRNS-A flexible multidimensional reactive transport model for simulating biogeochemical subsurface processes
Comput. Geosci. 36 (3), 397 - 405 10.1016/j.cageo.2009.06.009
Deepthike, H.U., Tecon, R., van Kooten, G.K., van der Meer, J.R., Harms, H., Wells, M., Short, J. (2010):
Response to comment on "Unlike PAHs from Exxon Valdez Crude Oil, PAHs from Gulf of Alaska Coals are not Readily Bioavailable"
Environ. Sci. Technol. 44 (6), 2212 - 2213 10.1021/es100176k
Duldhardt, I., Gaebel, J., Chrzanowski, Ł., Nijenhuis, I., Schauer, F., Heipieper, H.J. (2010):
Adaptation of anaerobically grown Thauera aromatica, Geobacter sulfurreducens and Desulfococcus multivorans to organic solvents on the level of membrane fatty acid composition
Microb. Biotechnol. 3 (2), 201 - 209 10.1111/j.1751-7915.2009.00124.X
Findening, B.M., Chatzinotas, A., Boenigk, J. (2010):
Taxonomic and ecological characterization of stomatocysts of Spumella-like flagellates (Chrysophyceae)
J. Phycol. 46 (5), 868 - 881 10.1111/j.1529-8817-2010.00892.x
Foit, K., Chatzinotas, A., Liess, M. (2010):
Short-term disturbance of a grazer has long-term effects on bacterial communities-Relevance of trophic interactions for recovery from pesticide effects
Aquat. Toxicol. 99 (2), 205 - 211 10.1016/j.aquatox.2010.04.019
Furuno, S., Päzolt, K., Rabe, C., Neu, T.R., Harms, H., Wick, L.Y. (2010):
Fungal mycelia allow chemotactic dispersal of polycyclic aromatic hydrocarbon-degrading bacteria in water-unsaturated systems
Environ. Microbiol. 12 (6), 1391 - 1398 10.1111/j.1462-2920.2009.02022.x
Galliker, P., Hommes, G., Schlosser, D., Corvini, P.F.-X., Shahgaldian, P. (2010):
Laccase-modified silica nanoparticles efficiently catalyze the transformation of phenolic compounds
J. Colloid Interface Sci. 349 (1), 98 - 105 10.1016/j.jcis.2010.05.031
Hanzel, J., Harms, H., Wick, L. (2010):
Bacterial chemotaxis along vapor-phase gradients of naphthalene
Environ. Sci. Technol. 44 (24), 9304 - 9310 10.1021/es100776h
Herrmann, S., Kleinsteuber, S., Chatzinotas, A., Kuppardt, A., Lueders, T., Richnow, H.H., Vogt, C. (2010):
Functional characterization of an anaerobic benzene-degrading enrichment culture by DNA stable isotope probing
Environ. Microbiol. 12 (2), 401 - 411 10.1111/j.1462-2920.2009.02077.x
Hesse, F., Harms, H., Attinger, S., Thullner, M. (2010):
Linear exchange model for the description of mass transfer limited bioavailability at the pore scale
Environ. Sci. Technol. 44 (6), 2064 - 2071 10.1021/es902489q
Hölscher, T., Breuer, U., Adrian, L., Harms, H., Maskow, T. (2010):
Production of the chiral compound (R)-3-Hydroxybutyrate by a genetically engineered methylotrophic bacterium
Appl. Environ. Microb. 76 (16), 5585 - 5591 10.1128/AEM.01065-10
Imfeld, G., Aragonés, C.E., Fetzer, I., Mészáros, E., Zeiger, S., Nijenhuis, I., Nikolausz, M., Delerce, S., Richnow, H.H. (2010):
Characterization of microbial communities in the aqueous phase of a constructed model wetland treating 1,2-dichloroethene-contaminated groundwater
FEMS Microbiol. Ecol. 72 (1), 74 - 88 10.1111/j.1574-6941.2009.00825.x
Jehmlich, N., Fetzer, I., Seifert, J., Mattow, J., Vogt, C., Harms, H., Thiede, B., Richnow, H.H., von Bergen, M., Schmidt, F. (2010):
Decimal place slope: a fast and precise method for quantifying ¹³C incorporation levels for detecting the metabolic activity of microbial species
Mol. Cell. Proteomics 9 (6), 1221 - 1227 10.1074/mcp.M900407-MCP200
Jehmlich, N., Hübschmann, T., Gesell Salazar, M., Völker, U., Benndorf, D., Müller, S., von Bergen, M., Schmidt, F. (2010):
Advanced tool for characterization of microbial cultures by combining cytomics and proteomics
Appl. Microbiol. Biotechnol. 88 (2), 575 - 584 10.1007/s00253-010-2753-6
Jehmlich, N., Kleinsteuber, S., Vogt, C., Benndorf, D., Harms, H., Schmidt, F., von Bergen, M., Seifert, J. (2010):
Phylogenetic and proteomic analysis of an anaerobic toluene-degrading community
J. Appl. Microbiol. 109 (6), 1937 - 1945 10.1111/j.1365-2672.2010.04823.x
Jousset, A., Lara, E., Nikolausz, M., Harms, H., Chatzinotas, A. (2010):
Application of the denaturing gradient gel electrophoresis (DGGE) technique as an efficient diagnostic tool for ciliate communities in soil
Sci. Total Environ. 408 (5), 1221 - 1225 10.1016/j.scitotenv.2009.09.056
Koschorreck, M., Geller, W., Neu, T.R., Kleinsteuber, S., Kunze, T., Trosiener, A., Wendt-Potthoff, K. (2010):
Structure and function of the microbial community in an in situ reactor to treat an acidic mine pit lake
FEMS Microbiol. Ecol. 73 (2), 385 - 395 10.1111/j.1574-6941.2010.00886.x
Kunapuli, U., Jahn, M.K., Lueders, T., Geyer, R., Heipieper, H.J., Meckenstock, R.U. (2010):
Desulfitobacterium aromaticivorans sp. nov. and Geobacter toluenoxydans sp. nov., iron-reducing bacteria capable of anaerobic degradation of monoaromatic hydrocarbons
Int. J. Syst. Evol. Microbiol. 60 (3), 686 - 695 10.1099/ijs.0.003525-0
Kuppardt, A., Vetterlein, D., Harms, H., Chatzinotas, A. (2010):
Visualisation of gradients in arsenic concentrations around individual roots of Zea mays L. using agar-immobilized bioreporter bacteria
Plant Soil 329 (1-2), 295 - 306 10.1007/s11104-009-0154-3
Kuppardt, S., Chatzinotas, A., Kästner, M. (2010):
Development of a fatty acid and RNA stable isotope probing-based method for tracking protist grazing on bacteria in wastewater
Appl. Environ. Microb. 76 (24), 8222 - 8230 10.1128/AEM.01632-10
Lammirato, C., Miltner, A., Wick, L.Y., Kästner, M. (2010):
Hydrolysis of cellobiose by β-glucosidase in the presence of soil minerals - Interactions at solid-liquid interfaces and effects on enzyme activity levels
Soil Biol. Biochem. 42 (12), 2203 - 2210 10.1016/j.soilbio.2010.08.018
Leibeling, S., Schmidt, F., Jehmlich, N., von Bergen, M., Müller, R.H., Harms, H. (2010):
Declining capacity of starving Delftia acidovorans MC1 to degrade phenoxypropionate herbicides correlates with oxidative modification of the initial enzyme
Environ. Sci. Technol. 44 (10), 3793 - 3799 10.1021/es903619j
Leibeling, S., Taubert, M., Seifert, J., von Bergen, M., Harms, H., Müller, R.H. (2010):
Adaptation of the herbicide-degrading strain Delftia acidovorans MC1 through carbonylation of RdpA as key enzyme
J. Biotechnol. 150 (Suppl. 1), S262 - S263 10.1016/j.jbiotec.2010.09.160
Mariana, F., Buchholz, F., Harms, H., Yong, Z., Yao, J., Maskow, T. (2010):
Isothermal titration calorimetry - A new method for the quantification of microbial degradation of trace pollutants
J. Microbiol. Methods 82 (1), 42 - 48 10.1016/j.mimet.2010.03.024
Maskow, T., Kemp, R., Buchholz, F., Schubert, T., Kiesel, B., Harms, H. (2010):
What heat is telling us about microbial conversions in nature and technology: from chip- to megacalorimetry
Microb. Biotechnol. 3 (3), 269 - 284 10.1111/j.1751-7915.2009.00121.x
Maskow, T., Kiesel, B., Schubert, T., Yong, Z., Harms, H., Yao, J. (2010):
Calorimetric real time monitoring of lambda prophage induction
J. Virol. Methods 168 (1-2), 126 - 132 10.1016/j.jviromet.2010.05.002
Müller, S., Harms, H., Bley, T. (2010):
Origin and analysis of microbial population heterogeneity in bioprocesses
Curr. Opin. Biotechnol. 21 (1), 100 - 113 10.1016/j.copbio.2010.01.002
Müller, S., Nebe-von-Caron, G. (2010):
Functional single-cell analyses: flow cytometry and cell sorting of microbial populations and communities
FEMS Microbiol. Rev. 34 (4), 544 - 587 10.1111/j.1574-6976.2010.00214.x
Nizzetto, L., Macleod, M., Borgå, K., Cabrerizo, A., Dachs, J., Di Guardo, A., Ghirardello, D., Hansen, K.M., Jarvis, A., Lindroth, A., Ludwig, B., Monteith, D., Perlinger, J.A., Scheringer, M., Schwendenmann, L., Semple, K.T., Wick, L.Y., Zhang, G., Jones, K.C. (2010):
Past, present, and future controls on levels of persistent organic pollutants in the global environment. Understanding the legacy of persistent organic pollutants requires studying the transition from primary to secondary source control
Environ. Sci. Technol. 44 (17), 6526 - 6531 10.1021/es100178f
Otto, B., Schlosser, D., Reisser, W. (2010):
First description of a laccase-like enzyme in soil algae
Arch. Microbiol. 192 (9), 759 - 768 10.1007/s00203-010-0603-7
Perner, M., Petersen, J.M., Zielinski, F.U., Gennerich, H.H., Seifert, R. (2010):
Geochemical constraints on the diversity and activity of H₂-oxidizing microorganisms in diffuse hydrothermal fluids from a basalt- and an ultramafic-hosted vent
FEMS Microbiol. Ecol. 74 (1), 55 - 71 10.1111/j.1574-6941.2010.00940.x
Przybylski, D., Yaneva, N., Harms, H., Rohwerder, T., Müller, R.H. (2010):
Functional expression of 2-hydroxyisobutyryl-coa mutase in different E. coli derivatives
J. Biotechnol. 150 (Suppl. 1), S258 10.1016/j.jbiotec.2010.09.149
Rohwerder, T., Müller, R.H. (2010):
Biosynthesis of 2-hydroxyisobutyric acid (2-HIBA) from renewable carbon
Microb. Cell. Fact. 9 , art. 13 10.1186/1475-2859-9-13
Rosell, M., Finsterbusch, S., Jechalke, S., Hübschmann, T., Vogt, C., Richnow, H.H. (2010):
Evaluation of the effects of low oxygen concentration on stable isotope fractionation during Aerobic MTBE biodegradation
Environ. Sci. Technol. 44 (1), 309 - 315 10.1021/es902491d
Schäfer, F., Harms, H., Rohwerder, T., Müller, R.H. (2010):
Microbial synthesis of chiral alcohols using a novel monooxygenase
J. Biotechnol. 150 (Suppl. 1), S356 10.1016/j.jbiotec.2010.09.406
Schleinitz, K.M., Vallaeys, T., Kleinsteuber, S. (2010):
Structural characterization of ISCR8, ISCR22, and ISCR23, subgroups of IS91-like insertion elements
Antimicrob. Agents Chemother. 54 (10), 4321 - 4328 10.1128/AAC.00006-10
Sträuber, H., Hübschmann, T., Jehmlich, N., Schmidt, F., von Bergen, M., Harms, H., Müller, S. (2010):
NBDT (3-(N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino)-3-toluene) - A novel fluorescent dye for studying mechanisms of toluene uptake into vital bacteria
Cytom. Part A 77A (2), 113 - 120 10.1002/cyto.a.20811
Sträuber, H., Müller, S. (2010):
Viability states of bacteria - specific mechanisms of selected probes
Cytom. Part A 77A (7), 623 - 634 10.1002/cyto.a.20920
Thullner, M. (2010):
Comparison of bioclogging effects in saturated porous media within one- and two-dimensional flow systems
Ecol. Eng. 36 (2), 176 - 196 10.1016/j.ecoleng.2008.12.037
Thullner, M. (2010):
Response to "Comment on 'Comparison of bioclogging effects in saturated porous media within one- and two-dimensional flow systems' by Martin Thullner" by Philippe Baveye
Ecol. Eng. 36 (6), 837 - 838 10.1016/j.ecoleng.2009.12.015
Villanueva, L., del Campo, J., Guerrero, R., Geyer, R. (2010):
Intact phospholipid and quinone biomarkers to assess microbial diversity and redox state in microbial mats
Microb. Ecol. 60 (1), 226 - 238 10.1007/s00248-010-9645-2
Wick, L.Y., Buchholz, F., Fetzer, I., Kleinsteuber, S., Härtig, C., Shi, L., Miltner, A., Harms, H., Pucci, G.N. (2010):
Responses of soil microbial communities to weak electric fields
Sci. Total Environ. 408 (20), 4886 - 4893 10.1016/j.scitotenv.2010.06.048
Witzig, M., Boguhn, J., Kleinsteuber, S., Fetzer, I., Rodehutscord, M. (2010):
Influence of the maize silage to grass silage ratio and feed particle size of rations for ruminants on the community structure of ruminal Firmicutes in vitro
J. Appl. Microbiol. 109 (6), 1998 - 2010 10.1111/j.1365-2672.2010.04829.x
Witzig, M., Boguhn, J., Kleinsteuber, S., Fetzer, I., Rodehutscord, M. (2010):
Effect of the corn silage to grass silage ratio and feed particle size of diets for ruminants on the ruminal Bacteroides-Prevotella community in vitro
Anaerobe 16 (4), 412 - 419 10.1016/j.anaerobe.2010.05.002
Zhang, C., Kang, Q., Wang, X., Zilles, J.L., Müller, R.H., Werth, C.J. (2010):
Effects of pore-scale heterogeneity and transverse mixing on bacterial growth in porous media
Environ. Sci. Technol. 44 (8), 3085 - 3092 10.1021/es903396h
Zhou, Y., Yao, J., He, M., Choi, M.M.F., Feng, L., Chen, H., Wang, F., Chen, K., Zhuang, R., Maskow, T., Wang, G., Zaray, G. (2010):
Reduction in toxicity of arsenic(III) to Halobacillus sp. Y35 by kaolin and their related adsorption studies
J. Hazard. Mater. 176 (1-3), 487 - 494 10.1016/j.jhazmat.2009.11.056

to index

Papers in other journals (not listed in ISI)

Index:

2025 (5)
2024 (3)
2023 (12)
2022 (3)
2021 (4)
2020 (3)
2019 (4)
2018 (5)
2017 (3)
2016 (2)
2015 (3)
2014 (2)
2013 (6)
2012 (6)
2011 (4)
2010 (6)

You could use our publication index for further requests.

2025 (5)

Abbaszade, G., Stückrath, K., Müller, S. (2025):
Microbial biopsy data [Data set]
Zenodo 10.5281/zenodo.14919103
Houben, T., Boog, J., Khurana, S., Ebeling, P., Schmid, J.S. (2025):
timohouben/sm-module: Final Release
Version: v1.0 Zenodo 10.5281/zenodo.14871758
Houben, T., Ebeling, P., Khurana, S., Schmid, J.S., Boog, J. (2025):
Digital Soil Moisture Mapping - Data accompanying Houben et al. 2025, Vadose Zone Journal [Data set]
Zenodo 10.5281/zenodo.14871615
Kasmanas, J.C., Magnúsdóttir, S., Zhang, J., Smalla, K., Schloter, M., Stadler, P.F., de Carvalho, A.C.P.L.F., Nunes da Rocha, U. (2025):
Supporting data for "Integrating comparative genomics and risk classification by assessing virulence, antimicrobial resistance, and plasmid spread in microbial communities with gSpreadComp"
GigaScience Database 10.5524/102699
Nasrabadi, A.M., Eckstein, D., Mettke, P., Ghanem, N., Kallies, R., Schmidt, M., Mothes, F., Schaefer, T., Graefe, R., Bandara, C.D., Maier, M., Liebert, U.G., Richnow, H., Hermann, H. (2025):
A virus aerosol chamber study: The impact of UVA, UVC, and H₂O₂ on airborne viral transmission
Environ. Health 3 (6), 648 - 658 10.1021/envhealth.4c00215

to index

2024 (3)

Grimm, H., Drabesch, S., Nicol, A., Straub, D., Joshi, P., Planer-Friedrich, B., Muehe, E.M. (2024):
Arsenic immobilization and greenhouse gas emission depend on quantity and frequency of nitrogen fertilization in paddy soil [Data set]
Zenodo 10.5281/zenodo.10679656
Nieto, E.E. (2024):
Nieto GC-FID [Data set]
Zenodo 10.5281/zenodo.12220242
Périat, C., Kuhn, T., Buffi, M., Corona-Ramirez, A., Fatton, M., Cailleau, G., Chain, P.S., Stanley, C.E., Wick, L.Y., Bindschedler, S., Gonzalez, D., Li Richter, X.-Y., Junier, P. (2024):
Host and nonhost bacteria support bacteriophage dissemination along mycelia and abiotic dispersal networks
microLife 5 , uqae004 10.1093/femsml/uqae004

to index

2023 (12)

Amarante Colpo, R. (2023):
rcolpo/pgp_reconstruction: First public release
Version: v0.0.4-beta Zenodo 10.5281/zenodo.8205880
Borer, B., Magnúsdóttir, S. (2023):
Data associated with publication "The media composition as a crucial element in high-throughput metabolic network reconstruction"
Zenodo 10.5281/zenodo.7515886
Buffi, M., Cailleau, G., Kuhn, T., Li Richter, X.-Y., Stanley, C.E., Wick, L.Y., Chain, P.S., Bindschedler, S., Junier, P. (2023):
Fungal drops: a novel approach for macro- and microscopic analyses of fungal mycelial growth
microLife 4 , uqad042 10.1093/femsml/uqad042
Förstner, K.U., Becker, A., Blom, J., Bork, P., Clavel, T., Dieckmann, M., Goesmann, A., Götz, B., Gübitz, T., Hufsky, F., Jünemann, S., Körner, M.-L., Marz, M., Nunes da Rocha, U., Overmann, J., Pühler, A., Rebholz-Schuhmann, D., Sczyrba, A., Stoye, J., Vandendorpe, J., Van Rossum, T., McHardy, A. (2023):
NFDI4Microbiota – national research data infrastructure for microbiota research
Res. Ideas Outcomes 9 , e110501 10.3897/rio.9.e110501
Harnisch, F., Lehneis, R. (2023):
The power grids need to be made ready for a circular and bio-based economy
Next Sustainability 2 , art. 100010 10.1016/j.nxsust.2023.100010
Kaesler, J.M., Lechtenfeld, O., Drabesch, S., Muehe, E.M. (2023):
Liquid chromatorgraphy Fourier transform ion cyclotron resonance mass spectrometry (LC-FT-ICR MS) data of dissolved organic matter (DOM) from soil solution samples of climate and cadmium manipulated soils
Data Investigation Portal UFZ 10.48758/ufz.14199
Kasmanas, J.C. (2023):
MAGs, ARGs, and VFs from the gSpreadComp work
Data Investigation Portal UFZ 10.48758/ufz.14212
Lai, B. (2023):
Biophotovoltaik: mikrobielle Wasserstoffproduktion
Biospektrum 29 (1), 97 - 98 10.1007/s12268-023-1873-3
Maskow, T., Schlosser, D. (2023):
Lignocellulose-Verwertung durch Pilze mit metabolischer Wärme erfassen
Biospektrum 29 (3), 321 - 323 10.1007/s12268-023-1944-5
Moeller, L., Trabitzsch, R., Bernhard, K., Schlosser, D., Wollschläger, N., Otto, P. (2023):
Die Gründachforschung in Leipzig
GebäudeGrün 2023 (4), 22 - 25
Wick, L.Y. (2023):
Pilze als Beweger und Gestalter im Untergrund [Fungi as movers and designers in the underground]
Biospektrum 29 (7), 725 - 727 10.1007/s12268-023-2041-5
Yang, S., Di Lodovico, E. (2023):
Enhancing Insights: Exploring the Information Content of Calorespirometric Measurements in Dynamic Soil Processes (Version 1.0)
Data Investigation Portal UFZ 10.48758/UFZ.14030

to index

2022 (3)

Golparvar, A. (2022):
amirgolp/P3D-BRNS: v0.1.0-beta
Zenodo 10.5281/zenodo.6301317
Izabel-Shen, D., Li, S., Luo, T., Wang, J., Li, Y., Sun, Q., Yu, C.-P., Hu, A. (2022):
Repeated introduction of micropollutants enhances microbial succession despite stable degradation patterns
ISME Commun. 2 , art. 48 10.1038/s43705-022-00129-0
Li, S., Müller, S. (2022):
Stabile Langzeitkultivierung mikrobieller Gemeinschaften im loop-design [Stable long-term cultivation of microbial communities in a loop design]
Biospektrum 28 (7), 705 - 708 10.1007/s12268-022-1846-y

to index

2021 (4)

Dai, S., Korth, B., Vogt, C., Harnisch, F. (2021):
Microbial electrochemical oxidation of anaerobic digestion effluent from treating HTC process water
Front. Chem. Eng. 3 , art. 652445 10.3389/fceng.2021.652445
Schramm, E., Douhaire, C., Hübner, T. (2021):
Komposttoiletten als Ausgangspunkt für sichere Düngeprodukte. Composting toilets as starting point for safe fertilizer products
Wasser und Abfall 23 (10), 52 - 56 10.1007/s35152-021-0681-7
Wick, L.Y. (2021):
Buchrezension zu: Umweltmikrobiologie (Walter Reineke und Michael Schlömann), 647 S., 335 Abb., Springer, 2020, 3. Aufl., SC, 44,99 €, ISBN: 9783662596548
Biospektrum 27 (2), 218 10.1007/s12268-021-1522-8
Xiong, B.-J., Dusny, C., Wang, L., Appel, J., Lindstaedt, K., Schlosser, D., Harms, H., Wick, L. (2021):
Illuminate the hidden: in vivo mapping of microscale pH in the mycosphere using a novel whole-cell biosensor
ISME Commun. 1 , art. 75 10.1038/s43705-021-00075-3

to index

2020 (3)

Heintz-Buschart, A., Guerra, C., Djukic, I., Cesarz, S., Chatzinotas, A., Patoine, G., Sikorski, J., Buscot, F., Küsel, K., Wegner, C.-E., Eisenhauer, N. (2020):
Microbial diversity-ecosystem function relationships across environmental gradients
Res. Ideas Outcomes 6 , e52217 10.3897/rio.6.e52217
Joss, H., Muehe, E.M., Kappler, A. (2020):
Arsen in Grundwasser und Reis — Ursachen und Konsequenzen [Arsenic in groundwater and rice - Causes and consequences]
Biospektrum 26 (6), 676 - 678 10.1007/s12268-020-1452-9
Nikolausz, M., Kretzschmar, J. (2020):
Anaerobic digestion in the 21st century. Editorial
Bioengineering-Basel 7 , art. 157 10.3390/bioengineering7040157

to index

2019 (4)

Harnisch, F. (2019):
Trendbericht Biochemie Teil 5: Biochemie unter Strom
Nachr. Chem. 67 (7-8), 64 - 66 10.1002/nadc.20194089045
Harnisch, F., Kuchenbuch, A. (2019):
Mr. Elektron erobert die Biosynthese [Mr. Electron conquers biosynthesis]
Biospektrum 25 (2), 232 - 233 10.1007/s12268-019-1035-9
Rodrigo Quejigo, J., Tejedor‑Sanz, S., Esteve‑Núñez, A., Harnisch, F. (2019):
Bed electrodes in microbial electrochemistry: setup, operation and characterization
ChemTexts 5 (1), art. 4 10.1007/s40828-019-0078-3
Said, N., Chatzinotas, A., Schmidt, M. (2019):
Have an ion on it: the life-cycle of Bdellovibrio bacteriovorus viewed by helium-ion microscopy
Adv. Biosyst. 3 (1), art. 1800250 10.1002/adbi.201800250

to index

2018 (5)

Harnisch, F., Blombach, B., Buyel, J., Centler, F., Classen, T., Ebert, B.E., Eyer, C., Dohnt, K., Grünberger, A., Jandt, U., Jung, S., Kara, S., Regestein, L., Schmid, J., Tischler, D., Wierckx, N. (2018):
Revisionsbedürftig? Rechte und Pflichten akademischer Nachwuchsführungskräfte
Forschung & Lehre 25 (9), 788 - 789
Schlosser, D. (2018):
Sind konventionelle Kunststoffe mikrobiell abbaubar?
Biospektrum 24 (4), 375 - 378 10.1007/s12268-018-0932-7
Strehlitz, B., Hunger, S., Kuchenbuch, A., Rosa, L.F.M., Harnisch, F. (2018):
Bakterien mit Strom füttern - Reaktoren für die Elektrobiotechnologie fit machen
GIT Labor-Fachzeitschrift 62 (3), 32 - 34
Strehlitz, B., Hunger, S., Kuchenbuch, A., Rosa, L.F.M., Harnisch, F. (2018):
Bakterien mit Strom füttern - Reaktoren für die Elektrobiotechnologie
ChemieXtra 8 (11), 19 - 21
Worrich, A. (2018):
Eine starke Allianz
Umwelt Perspektiven (Dezember 2018), 20 - 21

to index

2017 (3)

Kallies, R., Kiesel, B., Zopfi, J., Wick, L.Y., Chatzinotas, A. (2017):
Complete genome sequence of Alteromonas virus vB_AspP-H4/4
Genome Announc. 5 (43), e00914-17 10.1128/genomeA.00914-17
Korth, B., Maskow, T., Harnisch, F. (2017):
Bioelektrokalorimetrie — der mikrobielle elektrochemische Peltier-Effekt [Bioelectrocalorimetry - The microbial electrochemical Peltier effect]
Biospektrum 23 (2), 220 - 222 10.1007/s12268-017-0787-3
Schmid, J., Harnisch, F. (2017):
Das neue Wissenschaftszeitvertragsgesetz: Intention und Status quo!? [The new Act of Academic Fixed-Term Contract: Intention and status quo!?]
Biospektrum 23 (2), 119 10.1007/s12268-017-0773-9

to index

2016 (2)

Harnisch, F., Rosenbaum, M.A., Greiner, A., Schröder, U. (2016):
Wie Mikroorganismen und Elektroden interagieren
Nachr. Chem. 64 (7-8), 732 - 737 10.1002/nadc.20164044968
Kleinert, F., Kallies, R., Zweynert, A., Bierbaum, G. (2016):
Draft genome sequences of three northern German epidemic Staphylococcus aureus (ST247) strains containing multiple copies of IS256
Genome Announc. 4 (5), e00936-16 10.1128/genomeA.00936-16

to index

2015 (3)

Gimkiewicz, C., Hunger, S., Stang, C., Rosa, L.F.M., Zehnsdorf, A., Harnisch, F. (2015):
Bioreactors go electro – Bioreaktoren für Bioelektrotechnologie aufrüsten [Bioreactors go electro - Upgrading bioreactors for bioelectrotechnology]
Biospektrum 21 (4), 453 - 454 10.1007/s12268-015-0599-2
Herke, Z., Maskow, T., Németh, Z.I. (2015):
A new method for detecting cross-inhibition effects in the environmental biocatalytic processes
BioTechnologia 96 (4), 279 - 284 10.5114/bta.2015.57732
Sträuber, H., Bühligen, F., Kleinsteuber, S., Nikolausz, M., Porsch, K. (2015):
Improved anaerobic fermentation of wheat straw by alkaline pre-treatment and addition of alkali-tolerant microorganisms
Bioengineering-Basel 2 (2), 66 - 93 10.3390/bioengineering2020066

to index

2014 (2)

Harnisch, F., Holtmann, D., Agler-Rosenbaum, M., Schröder, U. (2014):
Die Elektrobiotechnologie in Deutschland nimmt Fahrt auf
Biospektrum 20 (1), 93 - 94
Kleinsteuber, S. (2014):
Editorial: Special Issue on "Microbial ecology of anaerobic digestion"
Bioengineering-Basel 1 (2), 111 - 112 10.3390/bioengineering1020111

to index

2013 (6)

Jahn, M., Seifert, J., Hübschmann, T., von Bergen, M., Harms, H., Müller, S. (2013):
Comparison of preservation methods for bacterial cells in cytomics and proteomics
Journal of Integrated OMICS 3 (1), 25 - 33 10.5584/jiomics.v3i1.115
Koch, C., Brumme, B., Müller, S. (2013):
Aktivitätsanalyse per Barcode: Mikrobielle Gemeinschaften im Visier der Durchflusszytometrie [Activity analysis per barcode: Microbial communities in the sight of flow cytometry]
Biospektrum 19 (4), 396 - 400 10.1007/s12268-013-0329-6
Narodoslawsky, M., Fiedler, D. (2013):
Energy, Sustainability and Society is celebrating two years of successful open-access publication. Editorial
Energy Sustain. Soc. 3 , art. 21 10.1186/2192-0567-3-21
Rosenbaum, M.A., Schröder, U., Harnisch, F. (2013):
Von der Abwasserreinigung zur Bioelektrotechnologie: Mikroben unter Strom
Biologie in unserer Zeit 43 (2), 96 - 103 10.1002/biuz.201310502
Ulbrich, K., Kornig, S., Lodemann, T., Eschenhagen, W., Bindel, L., Settele, J. (2013):
Klima und biologische Vielfalt - erforscht mit der Lernsoftware PRONAS
MNU, Math. Naturwiss. Unterr. 66 (3), 165 - 172
Wick, L.Y., Harms, H. (2013):
Unterirdische Autobahnen: Pilze beim Schadstoffabbau [Fungal-bacterial interactions. Fungal highways: Fungi in contaminant degradation]
Biospektrum 19 (7), 720 - 722 10.1007/s12268-013-0380-3

to index

2012 (6)

Hahn-Tomer, S. (2012):
Trinkwassertest mit Leuchtkraft
Die Welt (22.3.2012, Beil.)
Przybylski, D., Rohwerder, T., Harms, H., Müller, R.H. (2012):
Third-generation feed stocks for the clean and sustainable biotechnological production of bulk chemicals: synthesis of 2-hydroxyisobutyric acid
Energy Sustain. Soc. 2 , art. 11 10.1186/2192-0567-2-11
Pucci, G.N., Acuña, A.J., Wick, L., Pucci, O.H. (2012):
The use of electrobioremediation in hydrocarbon release and bioremediation
IJCR 4 (12), 451 - 454
Pucci, G.N., Acuña, A.J., Wick, L.Y., Pucci, O.H. (2012):
Electrobioremediation of Patagonian soils contaminated with hydrocarbons
Portugaliae Electrochimica Acta 30 (5), 361 - 370 10.4152/pea.201205361
Sträuber, H., Schröder, M., Kleinsteuber, S. (2012):
Metabolic and microbial community dynamics during the hydrolytic and acidogenic fermentation in a leach-bed process
Energy Sustain. Soc. 2 , art. 13 10.1186/2192-0567-2-13
Ziganshin, A.M., Ziganshina, E.E., Kleinsteuber, S., Pröter, J., Ilinskaya, O.N. (2012):
Methanogenic community dynamics during anaerobic utilization of agricultural wastes
Acta Naturae 4 (4), 91 - 97

to index

2011 (4)

Goodman, V., Müller, A., Gröger-Arndt, H., Schlosser, D., Jehmlich, N., Treudler, R., Lehmann, I., Simon, J.-C., von Bergen, M. (2011):
Identification of spore specific allergen candidates from Penicillium chrysogenum
Journal of Integrated OMICS 1 (2), 272 - 279 10.5584/jiomics.v1i2.75
Kuppardt, A., Harms, H. (2011):
Bakterien zum Nachweis von Arsen in Trinkwasser [Drinking water analysis: Bacteria for arsenic detection in drinking water]
Biospektrum 17 (3), 284 - 286 10.1007/s12268-011-0044-0
Narodoslawsky, M., Fiedler, D. (2011):
Editorial
Energy Sustain. Soc. 1 , art. 1 10.1186/2192-0567-1-1
Schlosser, D. (2011):
Pilze im Süßwasser und organische Umweltschadstoffe [Pollutant degradation: Freshwater fungi and organic environmental pollutants]
Biospektrum 17 (7), 745 - 748 10.1007/s12268-011-0120-5

to index

2010 (6)

Acuña, A.J., Pucci, G.N., Tonín, N., Wick, L., Pucci, O.H. (2010):
Electrobiorremediación. Una tecnología en dessarrollo para la recuperación de suelos contaminados con hidrocarburos
Ingeniería sanitaria y ambiental (105), 80 - 85
Acuña, A.J., Tonín, N., Pucci, G.N., Wick, L., Pucci, O.H. (2010):
Electrobioremediation of an unsaturated soil contaminated with hydrocarbon after landfarming treatment
Portugaliae Electrochimica Acta 28 (4), 253 - 263 10.4152/pea.201004253
Altenburger, R., Berns, A.E., Bittens, M., Brack, W., Burauel, P., Centler, F., Daus, B., Goss, K.-U., Harms, H., Kopinke, F.-D., Kühnel, D., Liess, M., Mackenzie, K., Miltner, A., Thullner, M., Wennrich, R., Wick, L.Y. (2010):
Chemicals in the environment (CITE). Report of the First Annual Conference of the Helmholtz research topic CITE
UWSF - Z. Umweltchem. Ökotox. 22 (4), 502 - 506 10.1007/s12302-010-0142-5
Fetzer, I., Jehmlich, N., Vogt, C., Richnow, H.H., Seifert, J., Harms, H., von Bergen, M., Schmidt, F. (2010):
Calculation of partial isotope incorporation into peptides measured by mass spectrometry
BMC Res. Notes 3 , art. 178 10.1186/1756-0500-3-178
Wendeberg, A. (2010):
Fluorescence in situ hybridization for the identification of environmental microbes
Cold Spring Harbor Protocols 2010 (1), prot5366 10.1101/pdb.prot5366
Zielinski, F.U., Dubilier, N. (2010):
Der Eukaryoten-Zellkern als ökologische Nische für Bakterien
Biospektrum 16 (1), 12 - 15

to index

Other publications

Index:

2025 (10)
2024 (5)
2023 (13)
2022 (4)
2021 (7)
2020 (9)
2019 (12)
2018 (15)
2017 (8)
2016 (9)
2015 (6)
2014 (11)
2013 (4)
2012 (10)
2011 (7)
2010 (13)

You could use our publication index for further requests.

2025 (10)

Yang, S., Paufler, S., Harms, H., Kaestner, M., Miltner, A., Maskow, T. (2025):
An isothermal microcalorimeter with integrated CO₂ sensor for simultaneous measurement of microbial heat evolution and mineralization
SSRN 10.2139/ssrn.5200781
Taillefer, B., Schattenberg, F., Doan, T., Müller, S., Cascales, E. (2025):
Type VI secretion phenotypic heterogeneity ensures trade-off between antibacterial activity and resistance in Enteroaggregative E. coli
bioRxiv 10.1101/2025.02.11.637775
Pérez-Villanueva, M.E., Jurburg, S.D., Malandain, C., Ghanem, N., Chatzinotas, A. (2025):
Soil protist diversity enhances prokaryotic diversity, and regulates dominant prokaryotes and the abundance of key nitrogen cycling genes
bioRxiv 10.1101/2025.02.06.636806
Kasmanas, J.C., Magnúsdóttir, S., Zhang, J., Smalla, K., Schloter, M., Stadler, P.F., de Carvalho, A.C.P.L.F., Nunes da Rocha, U. (2025):
Supporting data for "Integrating comparative genomics and risk classification by assessing virulence, antimicrobial resistance, and plasmid spread in microbial communities with gSpreadComp"
GigaScience Database 10.5524/102699
Houben, T., Ebeling, P., Khurana, S., Schmid, J.S., Boog, J. (2025):
Digital Soil Moisture Mapping - Data accompanying Houben et al. 2025, Vadose Zone Journal [Data set]
Zenodo 10.5281/zenodo.14871615
Houben, T., Boog, J., Khurana, S., Ebeling, P., Schmid, J.S. (2025):
timohouben/sm-module: Final Release
Version: v1.0 Zenodo 10.5281/zenodo.14871758
Ghosh, D., Shi, Y., Zimmermann, I.M., Holzhauser, K., von Bergen, M., Kaster, A.-K., Spielvogel, S., Dippold, M.A., Müller, J.A., Jehmlich, N. (2025):
Cover crop root channels promote bacterial adaptation to drought in the maize rhizosphere
bioRxiv 10.1101/2025.05.05.651044
Friebel, L., Knepper, J.-P., Becker, N.S., Abbaszade, G., Stückrath, K., Müller, S., Dreisewerd, K., Mascher, T. (2025):
Cannibalism shapes biofilm structure and composition in Bacillus subtilis
bioRxiv 10.1101/2025.03.21.644447
Feldl, M., Abbaszade, G., Schattenberg, F., Stückrath, K., Müller, S., Müller, C.L. (2025):
biscot: an Optimal Transport framework for multimodal bacterial single-cell data analysis
bioRxiv 10.1101/2025.03.28.645895
Abbaszade, G., Stückrath, K., Müller, S. (2025):
Microbial biopsy data [Data set]
Zenodo 10.5281/zenodo.14919103

to index

2024 (5)

Tang, Q., Richnow, H., Nunes da Rocha, U., Nikolausz, M., Wei, Y., Zhang, J. (2024):
Fate and risk management of antibiotic resistance genes in anaerobic digestion
In: Liang, B., Gao, S.-H., Wang, H.-C., Wang, A.-J. (eds.)
Water security: Big data-driven risk identification, assessment and control of emerging contaminants
Elsevier, Amsterdam, p. 409 - 419 10.1016/B978-0-443-14170-6.00029-9
Nieto, E.E. (2024):
Nieto GC-FID [Data set]
Zenodo 10.5281/zenodo.12220242
Moeller, L., Knapp, S., Schmauck, S., Otto, P., Schlosser, D., Wick, L.Y., Georgi, A., Friesen, J., Ueberham, M., Trabitzsch, R., Wollschläger, N., Schlink, U., Hofmann, D., Müller, R.A., Mackenzie, K. (2024):
Gründächer im urbanen Raum und ihre Ökosystemleistungen
In: Kabisch, S., Rink, D., Banzhaf, E. (Hrsg.)
Die resiliente Stadt: Konzepte, Konflikte, Lösungen
Springer Spektrum, Berlin, Heidelberg, S. 165 - 180 10.1007/978-3-662-66916-7_11
Grimm, H., Drabesch, S., Nicol, A., Straub, D., Joshi, P., Planer-Friedrich, B., Muehe, E.M. (2024):
Arsenic immobilization and greenhouse gas emission depend on quantity and frequency of nitrogen fertilization in paddy soil [Data set]
Zenodo 10.5281/zenodo.10679656
Balseiro-Romero, M., Wick, L.Y., Vila, J., Grifoll, M., Ortega-Calvo, J.J. (2024):
Drivers for efficient bioaugmentation and clean-up of contaminated soil
In: Ortega-Calvo, J.J., Coulon, F. (eds.)
Soil remediation science and technology
Handbook of Environmental Chemistry Series 130
Springer, Berlin, Heidelberg, p. 261 - 291 10.1007/698_2023_1064

to index

2023 (13)

Yang, S., Di Lodovico, E. (2023):
Enhancing Insights: Exploring the Information Content of Calorespirometric Measurements in Dynamic Soil Processes (Version 1.0)
Data Investigation Portal UFZ 10.48758/UFZ.14030
Thiele-Bruhn, S., Kästner, M., Miltner, A., Maskow, T., Lorenz, M. (2023):
SoilSystems, a research program on systems ecology of soils – energy discharge modulated by microbiome and boundary conditions
EGU General Assembly 2023, Vienna, Austria, 24–28 Apr 2023
EGUsphere
Copernicus Publications, EGU23-16304 10.5194/egusphere-egu23-16304
Schneider, H., Lai, B., Krömer, J. (2023):
Utilizing cyanobacteria in biophotovoltaics: An emerging field in bioelectrochemistry
In: Bühler, K., Lindberg, P. (eds.)
Cyanobacteria in biotechnology. Applications and quantitative perspectives
Adv. Biochem. Eng. Biotechnol. 183
Springer Nature, p. 281 - 302 10.1007/10_2022_212
Lorenz, M., Diehl, D., Maskow, T., Thiele-Bruhn, S. (2023):
Energy content of soil organic matter in soil profiles investigated by bomb calorimetry and DSC-TG
EGU General Assembly 2023, Vienna, Austria, 24–28 Apr 2023
EGUsphere
Copernicus Publications, EGU23-6542 10.5194/egusphere-egu23-6542
Lindberg, P., Kenkel, A., Bühler, K. (2023):
Introduction to cyanobacteria
In: Bühler, K., Lindberg, P. (eds.)
Cyanobacteria in biotechnology. Applications and quantitative perspectives
Adv. Biochem. Eng. Biotechnol. 183
Springer Nature, p. 1 - 24 10.1007/10_2023_217
Kasmanas, J.C. (2023):
MAGs, ARGs, and VFs from the gSpreadComp work
Data Investigation Portal UFZ 10.48758/ufz.14212
Kaesler, J.M., Lechtenfeld, O., Drabesch, S., Muehe, E.M. (2023):
Liquid chromatorgraphy Fourier transform ion cyclotron resonance mass spectrometry (LC-FT-ICR MS) data of dissolved organic matter (DOM) from soil solution samples of climate and cadmium manipulated soils
Data Investigation Portal UFZ 10.48758/ufz.14199
Harnisch, F., Sleutels, T., ter Heijne, A. (2023):
Basic electrochemistry for biotechnology
Wiley-VCH, 221 pp.
Di Lodovico, E., Meyer, M., Maskow, T., Schaumann, G., Fricke, C. (2023):
Isothermal macrocalorespirometry – novel instrument design to analysis microbial metabolism in soil systems
EGU General Assembly 2023, Vienna, Austria, 24–28 Apr 2023
EGUsphere
Copernicus Publications, EGU23-9096 10.5194/egusphere-egu23-9096
Chicaiza-Ortiz, C., Camacho, C., Chicaiza-Ortiz, Á., Beihan, Z., Jiangyue, D., Logroño, W., Zhang, J. (2023):
The effectiveness of iron-based additives in enhancing methane and hydrogen production: a systematic review
12th International Conference on Renewable Power Generation (RPG 2023), Shanghai, China, 14-15 October 2023
IET Conference Proceedings 2023
Institution of Engineering and Technology (IET), London, 10.1049/icp.2023.2243
Bühler, K., Lindberg, P. (eds., 2023):
Cyanobacteria in biotechnology: Applications and quantitative perspectives
Adv. Biochem. Eng. Biotechnol. 183
Springer Nature, 352 pp. 10.1007/978-3-031-33274-6
Borer, B., Magnúsdóttir, S. (2023):
Data associated with publication "The media composition as a crucial element in high-throughput metabolic network reconstruction"
Zenodo 10.5281/zenodo.7515886
Amarante Colpo, R. (2023):
rcolpo/pgp_reconstruction: First public release
Version: v0.0.4-beta Zenodo 10.5281/zenodo.8205880

to index

2022 (4)

Tischler, D., Wei, R., Harnisch, F. (2022):
Kapitel 3 Umweltbiotechnologie
Biotechnologie 2040 - Blick in die Zukunft einer Schlüsseltechnologie
DECHEMA, Frankfurt/Main, S. 53 - 65
Harnisch, F., Dohnt, K. (2022):
Kapitel 5 Elektrobiotechnologie
Biotechnologie 2040 - Blick in die Zukunft einer Schlüsseltechnologie
DECHEMA, Frankfurt/Main, S. 75 - 81
Golparvar, A. (2022):
amirgolp/P3D-BRNS: v0.1.0-beta
Zenodo 10.5281/zenodo.6301317
Assael, M.J., Maitland, G.C., Maskow, T., von Stockar, U., Wakeham, W.A., Will, S. (2022):
Commonly asked questions in thermodynamics, second edition
CRC Press / Taylor & Francis, Boca Raton, FL, 498 pp. 10.1201/9780429329524

to index

2021 (7)

Schlosser, D. (2021):
Cultivation of filamentous fungi for attack on synthetic polymers via biological Fenton chemistry
In: Weber, G., Bornscheuer, U.T., Wei, R. (eds.)
Enzymatic plastic degradation
Methods Enzymol. 648
Elsevier, p. 71 - 94 10.1016/bs.mie.2020.12.006
Schlosser, D. (2021):
Past, presence and future of macrofungi applications: old friends, yet unknown strangers
In: Sridhar, K.R., Deshmukh, S.K. (eds.)
Advances in macrofungi: Industrial avenues and prospects
Progress in Mycological Research
CRC Press / Taylor & Francis, Boca Raton, FL, p. 1 - 8
Sauer, J., Kolb, T., Pfeifer, P., Müller-Langer, F., Klemm, M., Jürgens, S., Peters, R., Hadrich, J., Schaadt, A., Harnisch, F., Zuberbühler, U. (2021):
Synthetische Kraftstoffe – Technologien, Prozessketten, Kohlenstoffquellen und Produkte
In: Szczepanski, P., Wunschick, F. (Hrsg.)
Forschung für den European Green Deal. Beiträge zur FVEE-Jahrestagung 2020 des ForschungsVerbunds Erneuerbare Energien 02. bis 04. November 2020, Online-Veranstaltung
FVEE-Themen 2020
ForschungsVerbund Erneuerbare Energien (FVEE), Berlin, 43 - 47
Rago, L., Harnisch, F. (2021):
Electroautotrophs: feeding microbes with current for CO₂ fixation
In: Kourist, R., Schmidt, S. (eds.)
The autotrophic biorefinery: raw materials from biotechnology
De Gruyter, Berlin ; Boston, p. 277 - 295 10.1515/9783110550603-010
Harnisch, F. (2021):
Chemikalien aus nichts als CO₂ und elektrischer Energie? Mit Elektrobiotechnologie!
In: Bach, M., Bronsema, V., Englbrecht, C., Horstmann, C.F., Kahnert, M., Pietzsch, J. (Hrsg.)
BIO Deutschland Jahrbuch 2021/2022
Biotechnologie-Industrie-Organisation Deutschland e. V. (BIO Deutschland), Berlin, S. 54 - 55
Ebert, B., Birzle-Harder, B., Douhaire, C., Hübner, T., Schramm, E., Winker, M. (2021):
Kompostprodukte aus hygienisierten Fäkalien und Pflanzenkohle: Bedürfnisse der Nutzenden, Kooperationsmodelle und rechtliche Rahmenbedingungen
ISOE-Materialien Soziale Ökologie 65
Institut für Sozial-Ökologische Forschung, Frankfurt am Main, 48 S.
de Almeida, B.L.S., Queiroz, A.P., Avila Santos, A.P., Bonidia, R.P., Nunes da Rocha, U., Sipoli Sanches, D., de Carvalho, A.C.P.L.F. (2021):
Feature importance analysis of non-coding DNA/RNA sequences based on machine learning approaches
In: Stadler, P.F., Walter, M.E.M.T., Hernandez-Rosales, M., Brigido, M.M. (eds.)
Advances in bioinformatics and computational biology. 14th Brazilian Symposium on Bioinformatics, BSB 2021, Virtual Event, November 22–26, 2021, Proceedings
Lect. Notes Comput. Sci. 13063
Springer, Berlin, Heidelberg, New York, p. 81 - 92 10.1007/978-3-030-91814-9_8

to index

2020 (9)

Wick, L.Y. (2020):
Bioavailability as a microbial system property: lessons learned from biodegradation in the mycosphere
In: Ortega-Calvo, J.-J., Parsons, J.R. (eds.)
Bioavailability of organic chemicals in soil and sediment
Handbook of Environmental Chemistry Series 100
Springer, Berlin, Heidelberg, p. 267 - 289 10.1007/698_2020_568
Schlosser, D. (2020):
Fungal attack on environmental pollutants representing poor microbial growth substrates
In: Nevalainen, H. (ed.)
Grand challenges in fungal biotechnology
Grand Challenges in Biology and Biotechnology
Springer International Publishing, Cham, p. 33 - 57 10.1007/978-3-030-29541-7_2
Schlosser, D. (2020):
Biotechnologies for water treatment
In: Filip, J., Cajthaml, T., Najmanová, P., Černík, M., Zbořil, R. (eds.)
Advanced nano-bio technologies for water and soil treatment
Springer, Cham, p. 335 - 343 10.1007/978-3-030-29840-1_15
Schlosser, D. (ed., 2020):
Laccases in bioremediation and waste valorisation
Microbiology Monographs 33
Springer, Berlin, Heidelberg, New York, 238 pp. 10.1007/978-3-030-47906-0
Popp, D., Bonk, F., Becker, D., Kleinsteuber, S. (2020):
Nucleic acid based molecular biology tests
In: Liebetrau, J., Pfeiffer, D. (eds.)
Collection of methods for biogas. Methods to determine parameters for analysis purposes and parameters that describe processes in the biogas sector
Biomass energy use 7
DBFZ Deutsches Biomasseforschungszentrum gemeinnützige GmbH, Leipzig, p. 232 - 244
Haghbeen, K., Schlosser, D. (2020):
Laccases in the context of potentially cooperating enzymes
In: Schlosser, D. (ed.)
Laccases in bioremediation and waste valorisation
Microbiology Monographs 33
Springer, Berlin, Heidelberg, New York, p. 79 - 114 10.1007/978-3-030-47906-0_4
Fischer, A., Kuntze, K., Müller, L., Richnow, H.-H., Nikolausz, M. (2020):
Differentiation of methanogenic pathways in biogas plants using compound-specific stable isotope analysis
In: Liebetrau, J., Pfeiffer, D. (eds.)
Collection of methods for biogas. Methods to determine parameters for analysis purposes and parameters that describe processes in the biogas sector
Biomass energy use 7
DBFZ Deutsches Biomasseforschungszentrum gemeinnützige GmbH, Leipzig, p. 268 - 278
Dzofou Ngoumelah, D., Harnisch, F., Kretzschmar, J. (2020):
Interaction between electroactive biofilms and anaerobic digestion effluents
3rd Doctoral Colloquium Bioenergy 17/18 September, 2020
DBFZ Deutsches Biomasseforschungszentrum gemeinnützige GmbH, Leipzig, p. 64 - 65
Borim Corrêa, F., Eziuzor, S., Peng, S., Schultz, J., Saraiva, J.P., Adrian, L., Stadler, P., Kleinsteuber, S., Vogt, C., Nunes da Rocha, U. (2020):
Genome-resolved metagenomics sheds light on the anaerobic conversion of aromatics by complex communities
3rd Doctoral Colloquium Bioenergy 17/18 September, 2020
DBFZ Deutsches Biomasseforschungszentrum gemeinnützige GmbH, Leipzig, p. 62 - 63

to index

2019 (12)

Wick, L.Y., Chatzinotas, A. (2019):
Capacity of ecosystems to degrade anthropogenic chemicals
In: Schröter, M., Bonn, A., Klotz, S., Seppelt, R., Baessler, C. (eds.)
Atlas of ecosystem services : drivers, risks, and societal responses
Springer International Publishing, Cham, p. 179 - 182 10.1007/978-3-319-96229-0_28
Thullner, M., Regnier, P. (2019):
Microbial controls on the biogeochemical dynamics in the subsurface
In: Druhan, J., Tournassat, C. (eds.)
Reactive transport in natural and engineered systems
Rev. Mineral. Geochem. 85
Mineralogical Society of America (MSA) ; Geochemical Society , Chantilly, VA , p. 265 - 302 10.2138/rmg.2019.85.9
Liebetrau, J., Sträuber, H., Kretzschmar, J., Denysenko, V., Nelles, M. (2019):
Anaerobic digestion
In: Wagemann, K., Tippkötter, N. (eds.)
Biorefineries
Adv. Biochem. Eng. Biotechnol. 166
Springer Nature, p. 281 - 299 10.1007/10_2016_67
Krieg, T., Madjarov, J., Rosa, L.F.M., Enzmann, F., Harnisch, F., Holtmann, D., Rabaey, K. (2019):
Reactors for microbial electrobiotechnology
In: Harnisch, F., Holtmann, D. (eds.)
Bioelectrosynthesis
Adv. Biochem. Eng. Biotechnol. 167
Springer Nature, p. 231 - 271 10.1007/10_2017_40
Korth, B., Harnisch, F. (2019):
Modeling microbial electrosynthesis
In: Harnisch, F., Holtmann, D. (eds.)
Bioelectrosynthesis
Adv. Biochem. Eng. Biotechnol. 167
Springer Nature, p. 273 - 325 10.1007/10_2017_35
Holtmann, D., Harnisch, F. (2019):
Electrification of biotechnology: Quo vadis?
In: Harnisch, F., Holtmann, D. (eds.)
Bioelectrosynthesis
Adv. Biochem. Eng. Biotechnol. 167
Springer Nature, p. 395 - 411 10.1007/10_2018_75
Holtmann, D., Harnisch, F. (2019):
Die Bioelektrosynthese als essentieller Baustein der Bioökonomie. DECHEMA Positionspapier
DECHEMA, Frankfurt/Main, 19 S.
Harnisch, F., Holtmann, D. (2019):
Electrification of biotechnology: Status quo
In: Harnisch, F., Holtmann, D. (eds.)
Bioelectrosynthesis
Adv. Biochem. Eng. Biotechnol. 167
Springer Nature, p. 1 - 14 10.1007/10_2017_41
Harnisch, F., Holtmann, D. (2019):
Bioelectrosynthesis: Preface
In: Harnisch, F., Holtmann, D. (eds.)
Bioelectrosynthesis
Adv. Biochem. Eng. Biotechnol. 167
Springer Nature, p. V - VI
Harnisch, F., Holtmann, D. (eds., 2019):
Bioelectrosynthesis
Adv. Biochem. Eng. Biotechnol. 167
Springer Nature, IX, 420 pp. 10.1007/978-3-030-03299-9
Harnisch, F., Bahnemann, J., Buyel, J., Centler, F., Classen, T., Dohnt, K., Ebert, B.E., Eyer, K., Grünberger, A., Jandt, U., Jung, S., Kara, S., Krujatz, F., Link, H., Regestein, L., Schmid, J., Tischler, D. (2019):
Rechte und Pflichten von akademischen Nachwuchsführungskräften. Stellungnahme des Zukunftsforums Biotechnologie der DECHEMA e.V.
DECHEMA, Frankfurt/Main, 15 S.
Druhan, J.L., Winnick, M.J., Thullner, M. (2019):
Stable isotope fractionation by transport and transformation
In: Druhan, J., Tournassat, C. (eds.)
Reactive transport in natural and engineered systems
Rev. Mineral. Geochem. 85
Mineralogical Society of America (MSA) ; Geochemical Society , Chantilly, VA , p. 239 - 264 10.2138/rmg.2019.85.8

to index

2018 (15)

Worrich, A., Wick, L.Y., Banitz, T. (2018):
Ecology of contaminant biotransformation in the mycosphere: Role of transport processes
In: Gadd, G.M., Sariaslani, S. (eds.)
Advances in Applied Microbiology 104
Elsevier, Oxford, p. 93 - 133 10.1016/bs.aambs.2018.05.005
Worrich, A. (2018):
Eine starke Allianz
KlarText - Preis für Wissenschaftskommunikation: Die Beiträge der Preisträger
Klaus Tschira Stiftung gGmbH, Heidelberg, S. 22 - 25
Wick, L.Y., Harms, H., Smith, K.E.C. (2018):
Microorganism-hydrophobic compound interactions
In: Krell, T. (ed.)
Cellular ecophysiology of microbe: Hydrocarbon and lipid interactions
Handbook of Hydrocarbon and Lipid Microbiology
Springer International Publishing, Cham, p. 17 - 31 10.1007/978-3-319-20796-4_40-1
Wick, L.Y., Harms, H. (2018):
The mycosphere as a hotspot for the biotransformation of contaminants in soil
In: Krell, T. (ed.)
Cellular ecophysiology of microbe: Hydrocarbon and lipid interactions
Handbook of Hydrocarbon and Lipid Microbiology
Springer International Publishing, Cham, p. 315 - 324 10.1007/978-3-319-20796-4_36-1
Thullner, M., Stefanakis, A.I., Dehestani, S. (2018):
Constructed wetlands treating water contaminated with organic hydrocarbons
In: Stefanakis, A.I. (ed.)
Constructed wetlands for industrial wastewater treatment
Wiley, Hoboken, NJ, p. 43 - 63 10.1002/9781119268376.ch2
Sträuber, H. (2018):
Mittelkettige Fettsäuren als Teilstrom des Biogasprozesses
DBFZ-Jahrestagung 2018: Energie & Stoffe aus Biomasse: Konkurrenten oder Partner? 19./20. September 2018
DBFZ Deutsches Biomasseforschungszentrum gemeinnützige GmbH, Leipzig, 156
Stinner, P.W., Deuker, A., Schmalfuß, T., Brock, C., Rensberg, N., Denysenko, V., Trainer, P., Möller, K., Zang, J., Janke, L., Leandro, W.M., Oehmichen, K., Popp, D., Daniel-Gromke, J. (2018):
Perennial and intercrop legumes as energy crops for biogas production
In: Meena, R.S., Das, A., Yadav, G.S., Lal, R. (eds.)
Legumes for soil health and sustainable management
Springer Singapore, Singapore, p. 139 - 171 10.1007/978-981-13-0253-4_5
Schwarz, S., Zuberbühler, U., Schmidt, M., Kretzschmar, J., Friedrich, A., Schröer, B., Hebling, C., Calnan, S., Peters, R., Dittmeyer, R., Harnisch, F., Nagel, T. (2018):
Power-to-X: Technologien für Übermorgen?!
In: Baur, F., Fischedick, M. (Hrsg.)
Innovationen für die Energiewende. Beiträge zur Jahrestagung 2017 des ForschungsVerbunds Erneuerbare Energien, 8. und 9. November 2017, Umweltforum Berlin
FVEE-Themen 2017
ForschungsVerbund Erneuerbare Energien (FVEE), Berlin, 49 - 52
Robles, C., Nair, R.B., Kleinsteuber, S., Nikolausz, M., Sárvári Horváth, I. (2018):
Biogas production: microbiological aspects
In: Tabatabaei, M., Ghanavati, H. (eds.)
Biogas, biofuel and biorefinery technologies
Biofuel and Biorefinery Technologies Vol. 6
Springer, p. 163 - 198 10.1007/978-3-319-77335-3_7
Liebetrau, J., Weinrich, S., Sträuber, H., Kretzschmar, J. (2018):
Anaerobic fermentation of organic material: biological processes and their control parameters
In: Meyers, R.A. (ed.)
Encyclopedia of sustainability science and technology
Springer, New York, p. 1 - 30 10.1007/978-1-4939-2493-6_962-1
Kleinsteuber, S. (2018):
Metagenomics of methanogenic communities in anaerobic digesters
In: Stams, A.J.M., Sousa, D.Z. (eds.)
Biogenesis of hydrocarbons
Handbook of Hydrocarbon and Lipid Microbiology
Springer International Publishing, Cham, 10.1007/978-3-319-53114-4_16-1
Heipieper, H.J., Martínez, P.M. (2018):
Toxicity of hydrocarbons to microorganisms
In: Krell, T. (ed.)
Cellular ecophysiology of microbe: Hydrocarbon and lipid interactions
Handbook of Hydrocarbon and Lipid Microbiology
Springer International Publishing, Cham, p. 335 - 344 10.1007/978-3-319-50542-8_45
Harms, H., Wick, L.Y., Smith, K.E.C. (2018):
Matrix - hydrophobic compound interactions
In: Krell, T. (ed.)
Cellular ecophysiology of microbe: Hydrocarbon and lipid interactions
Handbook of Hydrocarbon and Lipid Microbiology
Springer International Publishing, Cham, p. 33 - 45 10.1007/978-3-319-20796-4_39-1
Harms, H., Smith, K.E.C., Wick, L.Y. (2018):
Problems of hydrophobicity/bioavailability: an introduction
In: Krell, T. (ed.)
Cellular ecophysiology of microbe: Hydrocarbon and lipid interactions
Handbook of Hydrocarbon and Lipid Microbiology
Springer International Publishing, Cham, p. 3 - 15 10.1007/978-3-319-20796-4_38-1
Bonk, F. (2018):
Microbial resources management in anaerobic digestion
Dissertation, Universität Leipzig, Fakultät für Lebenswissenschaften
130 pp.

to index

2017 (8)

Wick, L.Y., Otto, S., Holliger, C. (2017):
Two-phase cultivation techniques for hydrocarbon-degrading microorganisms
In: McGenity, T.J., Timmis, K.N., Nogales, B. (eds.)
Hydrocarbon and lipid microbiology protocols. Isolation and cultivation
Springer Protocols Handbooks
Springer, Berlin, Heidelberg, p. 107 - 117 10.1007/8623_2015_124
Thrän, D., Kleinsteuber, S., Liebetrau, J., Simon, S., Krautkremer, B., Baur, F., Guss, H. (2017):
Smart bioenergy concept - Aufgaben der Bioenergie im Energiesystem der Zukunft
In: Szczepanski, P., Wunschick, F., Martin, N. (Hrsg.)
Forschung für die Energiewende - Die Gestaltung des Energiesystems. Beiträge zur Jahrestagung 2016 des ForschungsVerbunds Erneuerbare Energien, 2. und 3. November 2016, Umweltforum Berlin
FVEE-Themen 2016
ForschungsVerbund Erneuerbare Energien (FVEE), Berlin, 76 - 80
Schlosser, D., Wick, L.Y. (2017):
Cultivation of hydrocarbon-degrading fungi
In: McGenity, T.J., Timmis, K.N., Nogales, B. (eds.)
Hydrocarbon and lipid microbiology protocols. Isolation and cultivation
Springer Protocols Handbooks
Springer, Berlin, Heidelberg, p. 269 - 281 10.1007/8623_2015_97
Müller-Langer, F., Dietrich, R.-U., van de Krol, R., Arnold, K., Harnisch, F. (2017):
Erneuerbare Kraftstoffe für Mobilität und Industrie
In: Szczepanski, P., Wunschick, F., Martin, N. (Hrsg.)
Forschung für die Energiewende - Die Gestaltung des Energiesystems. Beiträge zur Jahrestagung 2016 des ForschungsVerbunds Erneuerbare Energien, 2. und 3. November 2016, Umweltforum Berlin
FVEE-Themen 2016
ForschungsVerbund Erneuerbare Energien (FVEE), Berlin, 110 - 116
Harnisch, F., Koch, C. (2017):
Mit Strom von Zucker zum Abfall und zurück. Biobrennstoffzellen bis Bioelektrosynthese
In: Koesling, V., Spierling, R. (Hrsg.)
Alles Zucker! Nahrung - Werkstoff - Energie
bebra Verlag, Berlin, S. 215 - 225
Harms, H., Wick, L.Y., Schlosser, D. (2017):
The fungal community in organically polluted systems
In: Dighton, J., White, J.F. (eds.)
The fungal community: Its organization and role in the ecosystem
Mycology Series 32
CRC Press / Taylor & Francis, Boca Raton, FL, p. 459 - 469
Harms, H., Wick, L.Y. (2017):
Determining the tendency of microorganisms to interact with hydrocarbon phases
In: McGenity, T.J., Timmis, K.N., Nogales, B. (eds.)
Hydrocarbon and lipid microbiology protocols. Activities and phenotypes
Springer Protocols Handbooks
Springer, Berlin, Heidelberg, p. 43 - 53 10.1007/8623_2015_77
Braune, M., Daniel-Gromke, J., Sträuber, H. (2017):
Von der Biogasanlage zur modernen Bioraffinerie
11. Rostocker Bioenergieforum "Beitrag der Bioenergie zur Senkung der Treibhausgasemission" am 22. und 23. Juni 2017 an der Universität Rostock : Tagungsband
Schriftenreihe Umweltingenieurwesen 68
Universität Rostock, Agrar- und Umweltwissenschaftliche Fakultät, Rostock, S. 105 - 113

to index

2016 (9)

Stefanakis, A.I., Thullner, M. (2016):
Fate of phenolic compounds in constructed wetlands treating contaminated water
In: Ansari, A.A., Gill, S.S., Gill, R., Lanza, G.R., Newman, L. (eds.)
Phytoremediation : management of environmental contaminants. Vol. 4
Springer International Publishing, Cham, p. 311 - 325 10.1007/978-3-319-41811-7_16
Siegfried, K., Hahn-Tomer, S., Heuser, S. (2016):
Waterbox & AQUA-CHECK—a newly developed package for drinking water supply and monitoring
In: Bhattacharya, P., Vahter, M., Jarsjö, J., Kumpiene, J., Ahmad, A., Sparrenbom, C., Jacks, G., Donselaar, M.E., Bundschuh, J., Naidu, R. (eds.)
Arsenic Research and Global Sustainability : Proceedings of the Sixth International Congress on Arsenic in the Environment (As2016), June 19-23, 2016, Stockholm, Sweden
CRC Press / Taylor & Francis, Boca Raton, FL, p. 245 - 246 10.1201/b20466-120
Schattenhofer, M., Hubalek, V., Wendeberg, A. (2016):
Identification of microorganisms in hydrocarbon-contaminated aquifer samples by fluorescence in situ hybridization (CARD-FISH)
In: McGenity, T.J., Timmis, K.N., Nogales, B. (eds.)
Hydrocarbon and lipid microbiology protocols. Ultrastructure and imaging
Springer Protocols Handbooks
Springer, Berlin, Heidelberg, p. 103 - 113 10.1007/8623_2014_9
Pröter, J., Lorenz, H., Sträuber, H. (2016):
Herausforderungen in der mikrobiellen biochemischen Konversion – welche Innovationen brauchen wir? Challenges for the microbial biochemical conversion – what kind of innovations do we need?
Mikroorganismen und Wirbellose – entscheidende Dienstleister für Landwirtschaft und Ernährung. Tagungsband eines Symposiums am 26./27. November 2015 in Berlin
Agrobiodiversität : Schriftenreihe des Informations- und Koordinationszentrums für Biologische Vielfalt 39
Bundesanstalt für Landwirtschaft und Ernährung , Bonn, S. 104 - 119
Popp, D. (2016):
Alternative substrates for biogas production: impact of plant secondary metabolites on the anaerobic digestion process
Dissertation, Universität Leipzig, Fakultät für Biowissenschaften, Pharmazie und Psychologie
149 pp.
Otto, B. (2016):
Laccases from green algae: occurrence, characteristics, and possible functions and uses
Dissertation, Universität Leipzig, Fakultät für Biowissenschaften, Pharmazie und Psychologie
79 pp.
Krueger, M.C. (2016):
Exploring capabilities and constraints of fungi for the oxidative decomposition of polystyrene and selected analogues
Dissertation, Universität Leipzig, Fakultät für Biowissenschaften, Pharmazie und Psychologie
151 pp.
Koch, C., Aulenta, F., Schröder, U., Harnisch, F. (2016):
Microbial electrochemical technologies: industrial and environmental biotechnologies based on interactions of microorganisms with electrodes
Comprehensive biotechnology
Reference Module in Earth Systems and Environmental Sciences 6
Elsevier, Amsterdam, p. 545 - 563 10.1016/B978-0-12-409548-9.09699-8
Dieckmann, C., Edelmann, W., Kaltschmitt, M., Liebetrau, J., Oldenburg, S., Ritzkowski, M., Scholwin, F., Sträuber, H., Weinrich, S. (2016):
Biogaserzeugung und –nutzung
In: Kaltschmitt, M., Hartmann, H., Hofbauer, H. (Hrsg.)
Energie aus Biomasse : Grundlagen, Techniken und Verfahren. 3., aktualisierte Aufl.
Springer, Berlin, Heidelberg, S. 1609 - 1635 10.1007/978-3-662-47438-9_19

to index

2015 (6)

Zanaroli, G., Beck, H., Beimfohr, C., Cichocka, D., Corvini, P., Frascari, D., Hofmann, U., Kästner, M., Macek, T., Müller, J.A., Uhlik, O., Schlosser, D. (2015):
Analytical and monitoring methods
In: Hochstrat, R., Wintgens, T., Corvini, P. (eds.)
Immobilized biocatalysts for bioremediation of groundwater and wastewater
IWA Publishing, London, p. 15 - 48
Siegfried, K., Koelsch, A., Osterwalder, E., Hahn-Tomer, S. (2015):
Advantages of biosensor water quality monitoring
In: Chalov, S.R., Karthe, D., Kasimov, N.S., Kappas, M. (eds.)
Water and environment in the Selenga-Baikal Basin. International research cooperation for an ecoregion of global relevance
Earth View - Geography and Geoinformation 23
Ibidem-Verlag, Stuttgart, p. 335 - 346
Müller, S., Schleinitz, K. (2015):
Flow cytometry and microbial community fingerprinting
In: Wilkinson, M.G. (ed.)
Flow cytometry in microbiology: Technology and applications
Caister Academic Press, Norfolk, p. 77 - 89
Jahn, M. (2015):
Characterization of population heterogeneity in a model biotechnological process using Pseudomonas putida
Dissertation, Universität Leipzig, Fakultät für Biowissenschaften, Pharmazie und Psychologie
115 pp.
Hochstrat, R., Schlosser, D., Corvini, P., Wintgens, T. (2015):
Introduction
In: Hochstrat, R., Wintgens, T., Corvini, P. (eds.)
Immobilised biocatalysts for bioremediation of groundwater and wastewater
IWA Publishing, London, p. 1 - 14
Ardao, I., Agathos, S.N., Ammann, E., Aluenta, F., Corvini, P., Frascari, D., Majone, M., Hochstrat, R., Hofmann, U., Kolvenbach, B., Schlosser, D., Zanaroli, G. (2015):
Immobilization techniques for biocatalysts
In: Hochstrat, R., Wintgens, T., Corvini, P. (eds.)
Immobilized biocatalysts for bioremediation of groundwater and wastewater
IWA Publishing, London, p. 49 - 69

to index

2014 (11)

Wick, L.Y., Qin, J. (2014):
Electrobioremediation of organic contaminants
In: Kreysa, G., Ota, K.-I., Savinell, R.F. (eds.)
Encyclopedia of Applied Electrochemistry, Vol. 1: A - E
Springer, New York, p. 392 - 397 10.1007/978-1-4419-6996-5
Solé, M., Schlosser, D. (2014):
Xenobiotics form human impacts
In: Krauss, G.-J., Nies, D.H. (eds.)
Ecological biochemistry: Environmental and interspecies interactions
Wiley-VCH, Weinheim, p. 259 - 275
Siegfried, K., Hahn-Tomer, S., Osterwalder, E., Pal, S., Mazumdar, A., Chakrabarti, R. (2014):
Demonstration of the genetically modified ARSOlux biosensor in Jyot Sujan, West Bengal, India
In: Litter, M.I., Nicolli, H.B., Meichtry, M., Quici, N., Bundschuh, J., Bhattacharya, P., Naidu, R. (eds.)
One Century of the Discovery of Arsenicosis in Latin America (1914-2014) As2014. Proceedings of the 5th International Congress on Arsenic in the Environment, May 11-16, 2014, Buenos Aires, Argentina
CRC Press, Boca Raton, FL, p. 867 - 869 10.1201/b16767-318
Schumann, J., Koch, C., Günther, S., Fetzer, I., Müller, S. (2014):
flowCyBar: Analyze flow cytometric data using gate information
R package version 1.2.0
http://www.bioconductor.org/packages/release/bioc/html/flowCyBar.html
October 2014: 1491 downloads (distinct IPs: December 2014: ~2000)
Schumann, J., Koch, C., Günther, S., Fetzer, I., Müller, S. (2014):
flowCHIC: Analyze flow cytometric data using histogram information
R package version 1.0.0
http://www.bioconductor.org/packages/release/bioc/html/flowCHIC.html
October 2014: 5 downloads (distinct IPs: ~500)
Schröder, U., dos Santos, T., Nilges, P., Harnisch, F. (2014):
„Electrofuels“ – Elektrochemie als Werkzeug für nachhaltige Kraftstoffsynthesen
In: Krahl, J., Munack, A., Bünger, J., Eilts, P. (Hrsg.)
Kraftstoffe für die Mobilität von morgen : 1. Tagung der Fuels Joint Research Group am 24. und 25. September 2014 in Braunschweig
Fuels Joint Research Group - Interdisziplinäre Kraftstoffforschung für die Mobilität der Zukunft 10
Cuvillier, Göttingen, S. 25 - 26
Schlosser, D., Krauss, G.-J. (2014):
Sensing of pollutant effects and bioremediation
In: Krauss, G.-J., Nies, D.H. (eds.)
Ecological biochemistry : environmental and interspecies interactions
Wiley-VCH, Weinheim, p. 333 - 340
Morais, F.M., Buchholz, F., Maskow, T. (2014):
Chip calorimetry for evaluation of biofilm treatment with biocides, antibiotics, and biological agents
In: Donelli, G. (ed.)
Microbial biofilms: methods and protocols
Methods in Molecular Biology 1147
Springer Nature, p. 267 - 275 10.1007/978-1-4939-0467-9_19
Hahn-Tomer, S., Siegfried, K., Chatzinotas, A., Kuppardt, A., Harms, H. (2014):
ARSOlux—arsenic biosensor based on bioreporter bacteria
In: Litter, M.I., Nicolli, H.B., Meichtry, M., Quici, N., Bundschuh, J., Bhattacharya, P., Naidu, R. (eds.)
One Century of the Discovery of Arsenicosis in Latin America (1914-2014) As2014. Proceedings of the 5th International Congress on Arsenic in the Environment, May 11-16, 2014, Buenos Aires, Argentina
CRC Press, Boca Raton, FL, p. 207 - 208 10.1201/b16767-79
Gharasoo, M. (2014):
Reactive transport simulations of microbial activity and biogeochemical transformations in porous environments: development and application of a pore-network model = Reactief transport simulaties van microbiele aktiviteit en biogeochemische transformaties in poreuze milieus: een porie-netwerkmodel ontwikkeling en toepassing
Dissertation
Utrecht Studies in Earth Sciences 59
Utrecht University, Utrecht, 103 pp.
Bühligen, F. (2014):
Functional properties of lager brewing yeast cells in industrial repitching processes
Dissertation, Universität Leipzig, Fakultät für Biowissenschaften, Pharmazie und Psychologie
118 pp.

to index

2013 (4)

Vogt, J., Stahl, F., Scheper, T., Müller, S. (2013):
Isolation of intact RNA from sorted S. cerevisiae cells for differential gene expression analysis
In: Gupta, V.K., Tuohy, M., Ayyachamy, M., Turner, K.M., O’Donovan, A. (eds.)
Laboratory protocols in fungal biology : current methods in fungal biology
Fungal Biology
Springer, New York, p. 265 - 277 10.1007/978-1-4614-2356-0_21
Schröder, U., Harnisch, F. (2013):
From microbial bioelectrocatalysis to microbial bioelectrochemical systems
In: Alkire, R.C., Kolb, D.M., Lipkowski, J., Kibler, L. (eds.)
Electrocatalysis : Theoretical Foundations and Model Experiments
Advances in Electrochemical Sciences and Engineering 14
Wiley-VCH, p. 137 - 162
Koch, C. (2013):
Monitoring microbial community dynamics with flow cytometry
Dissertation, Universität Leipzig, Fakultät für Biowissenschaften, Pharmazie und Psychologie
127 pp.
Giebler, J. (2013):
Processes driving the structure and function of alkane degrading bacterial communities at soil biogeochemical interfaces
Dissertation, Universität Leipzig, Fakultät für Biowissenschaften, Pharmazie und Psychologie
100, IX pp.

to index

2012 (10)

Zielinski, F.U., Dubilier, N. (2012):
Der Eukaryoten-Zellkern als ökologische Nische für Bakterien
In: Jahn, D. (Hrsg.)
Zellbiologie und Mikrobiologie - das Beste aus BIOspektrum
Springer Spektrum, Berlin, Heidelberg, S. 114 - 116
Wick, L.Y., Liess, M., Wendt-Potthoff, K., Schattenhofer, M. (2012):
The Helmholtz-Alberta Initiative: UFZ contributions to sustainable oil sands tailings water management
1st UFZ Energy Days 2012: 4-5 April 2012. Book of abstracts
UFZ Report 6/2012
Helmholtz Centre for Environmental Research - UFZ, Leipzig, p. 51
Wells, M. (2012):
Polycyclic aromatic hydrocarbon (PAH) sensitive bacterial biosensors in environmental health
In: Preedy, V.R., Patel, V.B. (eds.)
Biosensors and environmental health
Science Publishers, Boca Raton, FL, p. 170 - 190
Singh, S., Schlosser, D. (2012):
Fungal pre-treatment of lignocellulosic feedstock to improve biogas production
1st UFZ Energy Days 2012: 4-5 April 2012. Book of abstracts
UFZ Report 6/2012
Helmholtz Centre for Environmental Research - UFZ, Leipzig, p. 9
Maskow, T., Paufler, S., Sträuber, H., Kleinsteuber, S. (2012):
The potential of calorespirometry for control and analysis of biogas processes
1st UFZ Energy Days 2012: 4-5 April 2012. Book of abstracts
UFZ Report 6/2012
Helmholtz Centre for Environmental Research - UFZ, Leipzig, p. 8
Kopinke, F.-D., Harms, H. (2012):
BuildMoNa's fourth year - a principal investigator's view. Different perspectives on the same matter
BuildMoNa : graduate school Building with Molecules and Nano-objects. Annual report 2011
Universität Leipzig, Leipzig, p. 88 - 89
Hanzel, J. (2012):
Impact of vapor-phase contaminants on microbial growth and chemotaxis
Dissertation, Universität Leipzig
PhD Dissertation 4/2012
Helmholtz-Zentrum für Umweltforschung - UFZ, Leipzig, 102 pp.
De Biase, C., Maier, U., Oswald, S., Thullner, M. (2012):
Reactive transport simulation of volatile organic compound removal in vertical flow soil filters
ModelCare 2011: Models – Repositories of Knowledge. 8th International Conference on Calibration and Reliability in Groundwater Modeling, 18-22 September 2011, Helmholtz Centre for Environmental Research – UFZ, Leipzig, Germany - Book of Abstracts
62
Baarfuss, R., Blum, N., Conrads, C., Flecker, J., Huber Brösamle, A., Köster, R., Strobel, K., Wick, L.Y. (Hrsg., 2012):
Wirksames Management in der Wissenschaft : die eigene Arbeitsgruppe erfolgreich führen
Campus, Frankfurt/Main, 176 S.
Aurich, A., Specht, R., Müller, R.A., Stottmeister, U., Yovkova, V., Otto, C., Holz, M., Barth, G., Heretsch, P., Thomas, F.A., Sicker, D., Giannis, A. (2012):
Microbiologically produced carboxylic acids used as building blocks in organic synthesis
In: Wang, X., Chen, J., Quinn, P. (eds.)
Subcellular biochemistry, Volume 64; Reprogramming microbial metabolic pathways, Part 2
Springer, Berlin, Heidelberg, New York, p. 391 - 424 10.1007/978-94-007-5055-5_19

to index

2011 (7)

Schattenhofer, M., Wendeberg, A. (2011):
Capturing microbial populations for environmental genomics
In: de Bruijn, F.J. (ed.)
Handbook of molecular microbial ecology I : metagenomics and complementary approaches
Wiley-Blackwell, Hoboken, NJ, p. 735 - 740
Müller, S., Johnson, D.R. (2011):
Application of cytomics to separate natural microbial communities by their physiological properties
In: de Bruijn, F.J. (ed.)
Handbook of molecular microbial ecology I : metagenomics and complementary approaches
Wiley-Blackwell, Hoboken, NJ, p. 727 - 734
Müller, S., Bley, T. (eds., 2011):
High resolution microbial single cell analytics
Adv. Biochem. Eng. Biotechnol. 124
Springer, Berlin, Heidelberg, 233 pp. 10.1007/978-3-642-16887-1
Jacob, U., Thierry, A., Brose, U., Arntz, W.E., Berg, S., Brey, T., Fetzer, I., Jonsson, T., Mintenbeck, K., Möllmann, C., Petchey, O.L., Riede, J.O., Dunne, J.A. (2011):
The role of body size in complex food webs: a cold case
In: Belgrano, A., Reiss, J. (eds.)
The role of body size in multispecies systems
Advances in Ecological Research 45
Academic Press / Elsevier, London, p. 181 - 223 10.1016/B978-0-12-386475-8.00005-8
Headley, T., Nivala, J., Olsson, L., Weichert, G., Kassa, K., van Afferden, M., Müller, R. (2011):
Removal of E. coli in subsurface flow constructed wetlands - effect of plants and design
Society of Wetland Scientists (SWS) and Wetland Pollutant Dynamics and Control (WETPOL) Conference, 3 - 8 July 2011, Prague (CZ)
Dattagupta, S., Zielinski, F. (2011):
Symbiosis
In: Reitner, J., Thiel, V., Kappler, A., Konhauser, K., Núñez, A.E., Reid, P., Zhang, X. (eds.)
Encyclopedia of geobiology
Encyclopedia of Earth Sciences Series 17
Springer, Dordrecht, p. 866 - 870 10.1007/978-1-4020-9212-1_228
Bombach, P., Hübschmann, T., Fetzer, I., Kleinsteuber, S., Geyer, R., Harms, H., Müller, S. (2011):
Resolution of natural microbial community dynamics by community fingerprinting, flow cytometry, and trend interpretation analysis
In: Müller, S., Bley, T. (eds.)
High resolution microbial single cell analytics
Adv. Biochem. Eng. Biotechnol. 124
Springer, Berlin, Heidelberg, p. 151 - 181 10.1007/10_2010_82

to index

2010 (13)

Wick, L.Y., Furuno, S., Harms, H. (2010):
Fungi as transport vectors for contaminants and contaminant-degrading bacteria
In: Timmis, K.N., McGenity, T., van den Meer, J.R., de Lorenzo, V. (eds.)
Microbial utilization of hydrocarbons, oils and lipids
Handbook of Hydrocarbon and Lipid Microbiology Vol. 2, Part 8
Springer International Publishing, Cham, p. 1555 - 1561 10.1007/978-3-540-77587-4_107
van Afferden, M., Rahman, K., Mosig, P., De Biase, C., Thullner, M., Oswald, S., Müller, R. (2010):
Development, technical design and cost estimation of a Vertical Flow Soil Filter System for the remediation of groundwater contaminated with MTBE and benzene
ConSoil 2010, 22 - 24 September 2010 Salzburg, Austria ; Proceedings 11th International UFZ-Deltares - TNO Conference on Management of Soil, Groundwater & Sediments. Theme: A: Restoration; ThS_A19: Special subjects
Helmholtz-Zentrum für Umweltforschung - UFZ, Leipzig,
Thullner, M., De Biase, C., Hanzel, J., Reger, D., Wick, L., Oswald, S., van Afferden, M., Schmidt, A., Reiche, N., Jechalke, S. (2010):
Assessing the fate of biodegradable volatile organic contaminants in unsaturated soil filter systems
EGU General Assembly 2010, Vienna, Austria, 02–07 May 2010
Geophysical Research Abstracts 12
European Geosciences Union (EGU), EGU2010-13748
Pernthaler, A. (2010):
Identification of environmental microorganisms by fluorescence in situ hybridization
In: Timmis, K.N., McGenity, T., van der Meer, J.R., de Lorenzo, V. (eds.)
Experimental protocols and appendices
Handbook of Hydrocarbon and Lipid Microbiology Vol. 5, Part 3
Springer International Publishing, Cham, p. 4127 - 4135 10.1007/978-3-540-77587-4_322
Müller, S. (2010):
Functional flow cytometry in environmental microbiology
In: Timmis, K.N., McGenity, T., van der Meer, J.R., de Lorenzo, V. (eds.)
Experimental protocols and appendices
Handbook of Hydrocarbon and Lipid Microbiology Vol. 5, Part 3
Springer International Publishing, Cham, p. 4103 - 4112 10.1007/978-3-540-77587-4_320
Müller, S., Bley, T. (2010):
Flow cytometry
In: Flickinger, M.C. (ed.)
Encyclopedia of industrial biotechnology: bioprocess, bioseparation, and cell technology, Vol. 4
Wiley, Oxford, p. 2451 - 2467 10.1002/9780470054581.eib320
Kuppardt, A. (2010):
Improvement of bioreporter bacteria-based test systems for the analysis of arsenic in drinking water and the rhizosphere
Dissertation, Universität Leipzig
PhD Dissertation 2/2010
Helmholtz-Zentrum für Umweltforschung - UFZ, Leipzig, 87 pp.
Herrmann, S. (2010):
Molecular biological, physiological and isotope chemical analyses of BTEX (bio)degradation processes within a contaminated aquifer
Dissertation, TU Bergakademie Freiberg
PhD Dissertation 8/2010
Helmholtz-Zentrum für Umweltforschung - UFZ, Leipzig, 189 pp.
Heipieper, H.J., Martínez, P.M. (2010):
Toxicity of hydrocarbons to microorganisms
In: Timmis, K.N., McGenity, T., van den Meer, J.R., de Lorenzo, V. (eds.)
Microbial utilization of hydrocarbons, oils and lipids
Handbook of Hydrocarbon and Lipid Microbiology Vol. 2, Part 9
Springer International Publishing, Cham, p. 1565 - 1573 10.1007/978-3-540-77587-4_108
Harms, H., Wick, L.Y. (2010):
Determining the tendency of microorganisms to interact with hydrocarbon phases
In: Timmis, K.N., McGenity, T., van den Meer, J.R., de Lorenzo, V. (eds.)
Experimantal protocols and appendices
Handbook of Hydrocarbon and Lipid Microbiology Vol. 5, Part 2
Springer International Publishing, Cham, p. 3631 - 3639 10.1007/978-3-540-77587-4_286
Harms, H., Wick, L.Y., Smith, K.E.C. (2010):
Matrix-hydrophobic compound interactions
In: Timmis, K.N., McGenity, T., van den Meer, J.R., de Lorenzo, V. (eds.)
Microbial utilization of hydrocarbons, oils and lipids
Handbook of Hydrocarbon and Lipid Microbiology Vol. 2, Part 7
Springer International Publishing, Cham, p. 1467 - 1478 10.1007/978-3-540-77587-4_100
Harms, H., Smith, K.E.C., Wick, L.Y. (2010):
Introduction: problems of hydrophobicity/bioavailability
In: Timmis, K.N., McGenity, T., van den Meer, J.R., de Lorenzo, V. (eds.)
Microbial utilization of hydrocarbons, oils and lipids
Handbook of Hydrocarbon and Lipid Microbiology Vol. 2, Part 7
Springer International Publishing, Cham, p. 1439 - 1450 10.1007/978-3-540-77587-4_98
Harms, H., Smith, K.E.C., Wick, L.Y. (2010):
Microorganism-hydrophobic compound interactions
In: Timmis, K.N., McGenity, T., van den Meer, J.R., de Lorenzo, V. (eds.)
Microbial utilization of hydrocarbons, oils and lipids
Handbook of Hydrocarbon and Lipid Microbiology Vol. 2, Part 7
Springer International Publishing, Cham, p. 1479 - 1490 10.1007/978-3-540-77587-4_101

to index

The 10 most recent publications:

Moeller, L., Wollschläger, N., Hecht, C., Schlosser, D., Dietrich, P., Friesen, J., Trabitzsch, R., Bernhard, K., Otto, P. (2025):
Research green roof in Leipzig, Germany
Ecol. Eng. 220 , art. 107729 10.1016/j.ecoleng.2025.107729
Kasmanas, J.C., Magnúsdóttir, S., Zhang, J., Smalla, K., Schloter, M., Stadler, P.F., de Carvalho, A.C.P.L.F., Nunes da Rocha, U. (2025):
Integrating comparative genomics and risk classification by assessing virulence, antimicrobial resistance, and plasmid spread in microbial communities with gSpreadComp
GigaScience 14 , giaf072 10.1093/gigascience/giaf072
Kasmanas, J.C., Magnúsdóttir, S., Zhang, J., Smalla, K., Schloter, M., Stadler, P.F., de Carvalho, A.C.P.L.F., Nunes da Rocha, U. (2025):
Supporting data for "Integrating comparative genomics and risk classification by assessing virulence, antimicrobial resistance, and plasmid spread in microbial communities with gSpreadComp"
GigaScience Database 10.5524/102699
Pieńkowska, A., Fleischmann, J., Drabesch, S., Merbach, I., Wang, G., Nunes da Rocha, U., Reitz, T., Muehe, E.M. (2025):
Long-term organic fertilization shields soil prokaryotes from metal stress while mineral fertilization exacerbates it
Environ. Pollut. 382 , art. 126747 10.1016/j.envpol.2025.126747
Simoneit, M., Langer, H., Ulrich, N., Böhme, A. (2025):
Refining the amino reactivity-based identification of respiratory sensitizers
Chem. Res. Toxicol. 38 (6), 1046 - 1060 10.1021/acs.chemrestox.4c00545
Leiter, N., Wohlschläger, M., Versen, M., Harter, S.D., Kießlich, T., Lederer, F., Clauß, S., Schlosser, D., Armanu, E.G., Eberlein, C., Heipieper, H.J., Löder, M.G.J., Laforsch, C. (2025):
Effects of defined organic layers on the fluorescence lifetime of plastic materials
Anal. Bioanal. Chem. 417 , 3651 - 3663 10.1007/s00216-025-05888-y
Abbaszade, G., Stückrath, K., Müller, S. (2025):
Microbial biopsy data [Data set]
Zenodo 10.5281/zenodo.14919103
Houben, T., Boog, J., Khurana, S., Ebeling, P., Schmid, J.S. (2025):
timohouben/sm-module: Final Release
Version: v1.0 Zenodo 10.5281/zenodo.14871758
Houben, T., Ebeling, P., Khurana, S., Schmid, J.S., Boog, J. (2025):
Digital Soil Moisture Mapping - Data accompanying Houben et al. 2025, Vadose Zone Journal [Data set]
Zenodo 10.5281/zenodo.14871615
Tang, Q., Lu, T., Zhang, J., Huang, H., Guo, B., Nunes da Rocha, U., Nikolausz, M., Shen, P., Wei, Y., Deng, Y., Richnow, H.H. (2025):
Response of antibiotic resistance genes expression and mediating role of viral community to antibiotics and heavy metals in anaerobic digestion
Chem. Eng. J. 509 , art. 161396 10.1016/j.cej.2025.161396

Publications

All publications as of 2010 (until 2023: "Department of Environmental Microbiology"):

Accepted / in press

2025 (5)

2024 (2)

2023 (5)

2022 (1)

Papers in ISI listed journals

Index:

2025 (21)

2024 (48)

2023 (76)

2022 (87)

2021 (64)

2020 (60)

2019 (57)

2018 (64)

2017 (56)

2016 (52)

2015 (58)

2014 (51)

2013 (54)

2012 (38)

2011 (35)

2010 (50)

Papers in other journals (not listed in ISI)

Index:

2025 (5)

2024 (3)

2023 (12)

2022 (3)

2021 (4)

2020 (3)

2019 (4)

2018 (5)

2017 (3)

2016 (2)

2015 (3)

2014 (2)

2013 (6)

2012 (6)

2011 (4)

2010 (6)

Other publications

Index:

2025 (10)

2024 (5)

2023 (13)

2022 (4)

2021 (7)

2020 (9)

2019 (12)

2018 (15)

2017 (8)

2016 (9)

2015 (6)

2014 (11)

2013 (4)

2012 (10)

2011 (7)

2010 (13)

The 10 most recent publications:

All publications as of 2010
(until 2023: "Department of Environmental Microbiology"):