2025 (7)

• Abbaszade, G., Stückrath, K., Müller, S. (2025):
  Microbial biopsy data [Data set]
  Zenodo 10.5281/zenodo.14919103
• Abbaszade, G., Stückrath, K., Müller, S. (2025):
  Bacterial colony biopsies: Spatial discrimination of heterogeneous cell types by cytometric fingerprinting
  Methods Ecol. Evol. 10.1111/2041-210x.70022
• Houben, T., Boog, J., Khurana, S., Ebeling, P., Schmid, J.S. (2025):
  timohouben/sm-module: Final Release
  Version: v1.0 Zenodo 10.5281/zenodo.14871758
• Houben, T., Ebeling, P., Khurana, S., Schmid, J.S., Boog, J. (2025):
  Digital Soil Moisture Mapping - Data accompanying Houben et al. 2025, Vadose Zone Journal [Data set]
  Zenodo 10.5281/zenodo.14871615
• Jurburg, S.D. (2025):
  Short read lengths recover ecological patterns in 16S rRNA gene amplicon data
  Mol. Ecol. Resour. 10.1111/1755-0998.14102
• Nasrabadi, A.M., Eckstein, D., Mettke, P., Ghanem, N., Kallies, R., Schmidt, M., Mothes, F., Schaefer, T., Graefe, R., Bandara, C.D., Maier, M., Liebert, U.G., Richnow, H., Hermann, H. (2025):
  A virus aerosol chamber study: The impact of UVA, UVC, and H₂O₂ on airborne viral transmission
  Environ. Health 10.1021/envhealth.4c00215
• Sharma, P., Reitz, T., Singh, S.P., Worrich, A., Muehe, E.M. (2025):
  Going beyond improving soil health: cover plants as contaminant removers in agriculture
  Trends Plant Sci. 10.1016/j.tplants.2025.01.009

2024 (2)

• Grimm, H., Drabesch, S., Nicol, A., Straub, D., Joshi, P., Planer-Friedrich, B., Muehe, E.M. (2024):
  Arsenic immobilization and greenhouse gas emission depend on quantity and frequency of nitrogen fertilization in paddy soil [Data set]
  Zenodo 10.5281/zenodo.10679656
• Nieto, E.E. (2024):
  Nieto GC-FID [Data set]
  Zenodo 10.5281/zenodo.12220242

2023 (4)

• Amarante Colpo, R. (2023):
  rcolpo/pgp_reconstruction: First public release
  Version: v0.0.4-beta Zenodo 10.5281/zenodo.8205880
• Borer, B., Magnúsdóttir, S. (2023):
  Data associated with publication "The media composition as a crucial element in high-throughput metabolic network reconstruction"
  Zenodo 10.5281/zenodo.7515886
• Kaesler, J.M., Lechtenfeld, O., Drabesch, S., Muehe, E.M. (2023):
  Liquid chromatorgraphy Fourier transform ion cyclotron resonance mass spectrometry (LC-FT-ICR MS) data of dissolved organic matter (DOM) from soil solution samples of climate and cadmium manipulated soils
  Data Investigation Portal UFZ 10.48758/ufz.14199
• Yang, S., Di Lodovico, E. (2023):
  Enhancing Insights: Exploring the Information Content of Calorespirometric Measurements in Dynamic Soil Processes (Version 1.0)
  Data Investigation Portal UFZ 10.48758/UFZ.14030

2022 (1)

• Golparvar, A. (2022):
  amirgolp/P3D-BRNS: v0.1.0-beta
  Zenodo 10.5281/zenodo.6301317

2025 (13)

• Abbaszade, G., Stückrath, K., Müller, S. (2025):
  Microbial biopsy data [Data set]
  Zenodo 10.5281/zenodo.14919103
• Anuforo, P.C., Würz, B., Wick, L.Y., Kallies, R. (2025):
  Draft genome sequences of Pseudomonas chengduensis strain BW1 and Sphingobium sp. strain MK2 isolated from oil sands process-affected water
  Microbiol. Resour. Ann. 14 (2), e00677-24 10.1128/mra.00677-24
• Espinoza Miranda, S.S., Abbaszade, G., Hess, W.R., Drescher, K., Saliba, A.-E., Zaburdaev, V., Chai, L., Dreisewerd, K., Grüneberger, A., Westendorf, C., Müller, S., Mascher, T. (2025):
  Resolving spatiotemporal dynamics in bacterial multicellular populations: approaches and challenges
  Microbiol. Mol. Biol. Rev. 89 (1), e00138-24 10.1128/mmbr.00138-24
• Houben, T., Boog, J., Khurana, S., Ebeling, P., Schmid, J.S. (2025):
  timohouben/sm-module: Final Release
  Version: v1.0 Zenodo 10.5281/zenodo.14871758
• Houben, T., Ebeling, P., Khurana, S., Schmid, J.S., Boog, J. (2025):
  Digital Soil Moisture Mapping - Data accompanying Houben et al. 2025, Vadose Zone Journal [Data set]
  Zenodo 10.5281/zenodo.14871615
• Houben, T., Ebeling, P., Khurana, S., Schmid, J.S., Boog, J. (2025):
  Machine-learning based spatiotemporal prediction of soil moisture in a grassland hillslope
  Vadose Zone J. 24 (2), e70011 10.1002/vzj2.70011
• Li, Y., Tao, C., Li, S., Chen, W., Fu, D., Jafvert, C.T., Zhu, T. (2025):
  Feasibility study of machine learning to explore relationships between antimicrobial resistance and microbial community structure in global wastewater treatment plant sludges
  Bioresour. Technol. 417 , art. 131878 10.1016/j.biortech.2024.131878
• Santoro, E.P., Cárdenas, A., Villela, H.D.M., Vilela, C.L.S., Ghizelini, A.M., Duarte, G.A.S., Perna, G., Saraiva, J.P., Thomas, T., Voolstra, C.R., Peixoto, R.S. (2025):
  Inherent differential microbial assemblages and functions associated with corals exhibiting different thermal phenotypes
  Sci. Adv. 11 (3), eadq2583 10.1126/sciadv.adq2583
• Shan, Y., Hao, H., He, J., Hu, N., Liu, P., Zhang, M., Jiao, W., Yin, Y. (2025):
  Thermal enhanced electrokinetic bacterial transport in porous media
  Environ. Sci. Technol. 59 (3), 1683 - 1692 10.1021/acs.est.4c07954
• Tang, Q., Lu, T., Zhang, J., Huang, H., Guo, B., Nunes da Rocha, U., Nikolausz, M., Shen, P., Wei, Y., Deng, Y., Richnow, H.H. (2025):
  Response of antibiotic resistance genes expression and mediating role of viral community to antibiotics and heavy metals in anaerobic digestion
  Chem. Eng. J. 509 , art. 161396 10.1016/j.cej.2025.161396
• Wang, G., Haenelt, S., Borim Corrêa, F., Nunes da Rocha, U., Musat, F., Zhang, J., Müller, J.A., Musat, N. (2025):
  Riverine antibiotic resistome along an anthropogenic gradient
  Front. Microbiol. 16 , art. 1516033 10.3389/fmicb.2025.1516033
• Yang, S., Rupp, A., Kästner, M., Harms, H., Miltner, A., Maskow, T. (2025):
  Experimental access to cellulose oxidation and the dynamics of microbial carbon and energy use in artificial soil under varying temperature, water content, and C/N ratio
  Soil Biol. Biochem. 203 , art. 109717 10.1016/j.soilbio.2025.109717
• Zhu, T., Li, S., Tao, C., Chen, W., Chen, M., Zong, Z., Wang, Y., Li, Y., Yan, B. (2025):
  Understanding the mechanism of microplastic-associated antibiotic resistance genes in aquatic ecosystems: Insights from metagenomic analyses and machine learning
  Water Res. 268, Part A , art. 122570 10.1016/j.watres.2024.122570

2024 (48)

• Abdulkadir, N., Saraiva, J.P., Zhang, J., Stolte, S., Gillor, O., Harms, H., Nunes da Rocha, U. (2024):
  Genome-centric analyses of 165 metagenomes show that mobile genetic elements are crucial for the transmission of antimicrobial resistance genes to pathogens in activated sludge and wastewater
  Microbiol. Spectr. 12 (3), e02918-23 10.1128/spectrum.02918-23
• Acuña, J.J., Rilling, J.I., Inostroza, N.G., Zhang, Q., Wick, L.Y., Sessitsch, A., Jorquera, M.A. (2024):
  Variovorax sp. strain P1R9 applied individually or as part of bacterial consortia enhances wheat germination under salt stress conditions
  Sci. Rep. 14 , art. 2070 10.1038/s41598-024-52535-0
• Akay, C., Ulrich, N., Ding, C., Nunes da Rocha, U., Adrian, L. (2024):
  Sequential anaerobic-aerobic treatment enhances sulfamethoxazole removal: From batch cultures to observations in a large-scale wastewater treatment plant
  Environ. Sci. Technol. 58 (28), 12609 - 12620 10.1021/acs.est.4c00368
• Avila Santos, A.P., de Almeida, B.L.S., Bonidia, R.P., Stadler, P.F., Stefanic, P., Mandic-Mulec, I., Nunes da Rocha, U., Sanches, D.S., de Carvalho, A.C.P.L.F. (2024):
  BioDeepfuse: a hybrid deep learning approach with integrated feature extraction techniques for enhanced non-coding RNA classification
  RNA Biol. 21 (1), 1 - 12 10.1080/15476286.2024.2329451
• Carreira, C., Lønborg, C., Acharya, B., Aryal, L., Buivydaite, Z., Borim Corrêa, F., Chen, T., Lorenzen Elberg, C., Emerson, J.B., Hillary, L., Khadka, R.B., Langlois, V., Mason-Jones, K., Netherway, T., Sutela, S., Trubl, G., wa Kang’eri, A., Wang, R., White III, R.A., Winding, A., Zhao, T., Sapkota, R. (2024):
  Integrating viruses into soil food web biogeochemistry
  Nat. Microbiol. 9 (8), 1918 - 1928 10.1038/s41564-024-01767-x
• Cerecetto, V., Leoni, C., Jurburg, S.D., Kampouris, I.D., Smalla, K., Babin, D. (2024):
  Pasture-crop rotations modulate the soil and rhizosphere microbiota and preserve soil structure supporting oat cultivation in the Pampa biome
  Soil Biol. Biochem. 195 , art. 109451 10.1016/j.soilbio.2024.109451
• Cohen, Y., Johnke, J., Abed-Rabbo, A., Pasternak, Z., Chatzinotas, A., Jurkevitch, E. (2024):
  Unbalanced predatory communities and a lack of microbial degraders characterize the microbiota of a highly sewage-polluted Eastern-Mediterranean stream
  FEMS Microbiol. Ecol. 100 (6), fiae069 10.1093/femsec/fiae069
• Drabesch, S., Lechtenfeld, O.J., Bibaj, E., Ninin, J.M.L., Pachecco, J.L., Fendorf, S., Planer-Friedrich, B., Kappler, A., Muehe, E.M. (2024):
  Climate induced microbiome alterations increase cadmium bioavailability in agricultural soils with pH below 7
  Commun. Earth Environ. 5 , art. 637 10.1038/s43247-024-01794-w
• Duong, H.L., Paufler, S., Harms, H., Maskow, T., Schlosser, D. (2024):
  Biocalorimetry-aided monitoring of fungal pretreatment of lignocellulosic agricultural residues
  Appl. Microbiol. Biotechnol. 108 (1), art. 394 10.1007/s00253-024-13234-y
• Florentino, B.R., Bonidia, R.P., Sanches, N.H., Nunes da Rocha, U., de Carvalho, A.C.P.L.F. (2024):
  BioPrediction-RPI: Democratizing the prediction of interaction between non-coding RNA and protein with end-to-end machine learning
  Comp. Struct. Biotechnol. J. 23 , 2267 - 2276 10.1016/j.csbj.2024.05.031
• Florentino, B.R., Bonidia, R.P., Sanches, N.H., Nunes da Rocha, U., de Carvalho, A.C.P.L.F. (2024):
  Corrigendum to “BioPrediction-RPI: Democratizing the prediction of interaction between non-coding RNA and protein with end-to-end machine learning” [Comput Struct Biotechnol J, vol. 23, pp 2267-2276]
  Comp. Struct. Biotechnol. J. 23 , 3019 10.1016/j.csbj.2024.07.015
• Garcia-Garcia, G., Parra-López, C., Siddiqui, M.A., Lin, C.S.K., Maalej, H., Njeh, F., Galve, E., Ghrab, S., Belhassen, S., Hassoun, A., Rojas-Serrano, F., Rodríguez-Pleguezuelo, C.R., Sayadi, S. (2024):
  Improving waste management strategies in the food sector: case studies from Spain, Tunisia and Hong Kong
  J. Mater. Cycles Waste Manag. 26 (4), 2265 - 2277 10.1007/s10163-024-01965-z
• Golparvar, A., Kästner, M., Thullner, M. (2024):
  P3D-BRNS v1.0.0: a three-dimensional, multiphase, multicomponent, pore-scale reactive transport modelling package for simulating biogeochemical processes in subsurface environments
  Geosci. Model Dev. 17 (2), 881 - 898 10.5194/gmd-17-881-2024
• Gonzalez-Gonzalez, S., Zhang, Q., Acuña, J.J., Sadowsky, M.J., Wick, L.Y., Jorquera, M.A. (2024):
  Mycelia migratory bacteria in compost and compost–amended rhizosphere soil in a table grape orchard
  J. Soil Sci. Plant Nutr. 24 (3), 4666 - 4680 10.1007/s42729-024-01862-2
• Grafmüller, J., Möllmer, J., Muehe, E.M., Kammann, C.I., Kray, D., Schmidt, H.-P., Hagemann, N. (2024):
  Granulation compared to co-application of biochar plus mineral fertilizer and its impacts on crop growth and nutrient leaching
  Sci. Rep. 14 , art. 16555 10.1038/s41598-024-66992-0
• Grimm, H., Drabesch, S., Nicol, A., Straub, D., Joshi, P., Planer-Friedrich, B., Muehe, E.M. (2024):
  Arsenic immobilization and greenhouse gas emission depend on quantity and frequency of nitrogen fertilization in paddy soil [Data set]
  Zenodo 10.5281/zenodo.10679656
• Grimm, H., Drabesch, S., Nicol, A., Straub, D., Joshi, P., Zarfl, C., Planer-Friedrich, B., Muehe, E.M., Kappler, A. (2024):
  Arsenic immobilization and greenhouse gas emission depend on quantity and frequency of nitrogen fertilization in paddy soil
  Heliyon 10 (16), e35706 10.1016/j.heliyon.2024.e35706
• He, J., Castilla Alcantara, J.C., Ortega-Calvo, J.J., Harms, H., Wick, L.Y. (2024):
  DC electric fields promote biodegradation of waterborne naphthalene in biofilter systems
  Environ. Sci. Technol. 58 (41), 18234 - 18243 10.1021/acs.est.4c02924
• Hoffstadt, K., Nikolausz, M., Krafft, S., Bonatelli, M.L., Kumar, V., Harms, H., Kuperjans, I. (2024):
  Optimization of the ex situ biomethanation of hydrogen and carbon dioxide in a novel meandering plug flow reactor: Start-up phase and flexible operation
  Bioengineering 11 (2), art. 165 10.3390/bioengineering11020165
• Jurburg, S.D., Álvarez Blanco, M.J., Chatzinotas, A., Kazem, A., Babin, D., König-Ries, B., Smalla, K., Cerecetto, V., Fernandez-Gnecco, G., Covacevich, F., Viruel, E., Bernaschina, Y., Leoni, C., Garaycochea, S., Terra, J.A., Fresia, P., Figuerola, E.L.M., Wall, L.G., Covelli, J.M., Agnello, A.C., Nieto, E.E., Festa, S., Dominici, L.E., Allegrini, M., Zabaloy, M.C., Morales, M.E., Erijman, L., Coniglio, A., Cassán, F.D., Nievas, S., Roldán, D.M., Menes, R., Jauri, P.V., Marrero, C.S., Massa, A.M., Morel Revetria, M.A., Fernández-Scavino, A., Pereira-Mora, L., Martínez, S., Frene, J.P., Datathon 2022 Consortium, (2024):
  Datathons: fostering equitability in data reuse in ecology
  Trends Microbiol. 32 (5), 415 - 418 10.1016/j.tim.2024.02.010
• Jurburg, S.D., Blowes, S.A., Shade, A., Eisenhauer, N., Chase, J.M. (2024):
  Synthesis of recovery patterns in microbial communities across environments
  Microbiome 12 , art. 79 10.1186/s40168-024-01802-3
• Keller, N.S., Lüders, K., Hornbruch, G., Birnstengel, S., Vogt, C., Ebert, M., Kallies, R., Dahmke, A., Richnow, H.H. (2024):
  Rapid consumption of dihydrogen injected into a shallow aquifer by ecophysiologically different microbes
  Environ. Sci. Technol. 58 (1), 333 - 341 10.1021/acs.est.3c04340
• Khan, M.J., Brodie, G., Jurburg, S.D., Chen, Q., Hu, H.-W., Gupta, D., Mattner, S.W., He, J.-Z. (2024):
  Assessing the effects of microwave heat disturbance on soil microbial communities in Australian agricultural environments: A microcosm study
  Appl. Soil Ecol. 198 , art. 105386 10.1016/j.apsoil.2024.105386
• Khurana, S., Heße, F., Hildebrandt, A., Thullner, M. (2024):
  Microbial mediated carbon and nitrogen cycling in the spatially heterogenous vadose zone: A modeling study
  Vadose Zone J. 23 (2), e20315 10.1002/vzj2.20315
• Le, A.V., Muehe, E.M., Bone, S., Drabesch, S., Fischer, S., Kappler, A. (2024):
  Field and laboratory evidence for manganese redox cycling controlling iron and arsenic retention in household sand filters
  ACS ES&T Water 4 (1), 33 - 43 10.1021/acsestwater.3c00245
• Nieto, E.E. (2024):
  Nieto GC-FID [Data set]
  Zenodo 10.5281/zenodo.12220242
• Nieto, E.E., Jurburg, S.D., Steinbach, N., Festa, S., Morelli, I.S., Coppotelli, B.M., Chatzinotas, A. (2024):
  DNA stable isotope probing reveals the impact of trophic interactions on bioaugmentation of soils with different pollution histories
  Microbiome 12 , art. 146 10.1186/s40168-024-01865-2
• Ninin, J.M.L., Muehe, E.M., Kölbl, A., Mori, A.H., Nicol, A., Gilfedder, B., Pausch, J., Urbanski, L., Lueders, T., Planer-Friedrich, B. (2024):
  Changes in arsenic mobility and speciation across a 2000-year-old paddy soil chronosequence
  Sci. Total Environ. 908 , art. 168351 10.1016/j.scitotenv.2023.168351
• Nunes da Rocha, U., Kasmanas, J.C., Kallies, R., Saraiva, J.P., Brizola Toscan, R., Štefanič, P., Fleming Bicalho, M., Borim Correa, F., Baştürk, M.N., Fousekis, E., Viana Barbosa, L.M., Plewka, J., Probst, A.J., Baldrian, P., Stadler, P.F., CLUE-TERRA consortium, (2024):
  MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy
  Mol. Ecol. Resour. 24 (2), e13904 10.1111/1755-0998.13904
• Nunes da Rocha, U., Kasmanas, J.C., Toscan, R., Sanches, D.S., Magnúsdóttir, S., Saraiva, J.P. (2024):
  Simulation of 69 microbial communities indicates sequencing depth and false positives are major drivers of bias in prokaryotic metagenome-assembled genome recovery
  PLoS Comput. Biol. 20 (10), e1012530 10.1371/journal.pcbi.1012530
• Okeke, M., Eze, P.M., Chukwudebelu, A.E., Nwankwo, C.J., Eze, N.K., Okafor, U.U., Abonyi, I.C., Okereke, E.E., Obasi, K.O., Ede, O.A., Ejikeugwu, C.P., Ilo, C.I., Okafor, J.O. (2024):
  Tuberculosis and HIV/AIDS coinfection in patients attending Directly Observed Treatment Short-course (DOTS) centers in Anambra State, Nigeria: A retrospective study
  Health Sci Rep. 7 (6), e2201 10.1002/hsr2.2201
• Oliveira, V., Cleary, D.F.R., Polónia, A.R.M., Huang, Y.M., Nunes da Rocha, U., de Voogd, N.J., Gomes, N.C.M. (2024):
  Unravelling a latent pathobiome across coral reef biotopes
  Environ. Microbiol. 26 (12), e70008 10.1111/1462-2920.70008
• Oprei, A., Schreckinger, J., Kamjunke, N., Worrich, A., Mutz, M., Risse-Buhl, U. (2024):
  Migrating ripples create streambed heterogeneity altering microbial diversity and metabolic activity
  Limnol. Oceanogr. 69 (8), 1882 - 1899 10.1002/lno.12631
• Ozbayram, E.G., Kleinsteuber, S., Sträuber, H., Grosch Schroeder, B., Nunes da Rocha, U., Borim Corrêa, F., Harms, H., Nikolausz, M. (2024):
  Three-domain microbial communities in the gut of Pachnoda marginata larvae: A comparative study revealing opposing trends in gut compartments
  Environ. Microbiol. Rep. 16 (4), e13324 10.1111/1758-2229.13324
• Rau, F., Elsner, C., Meister, T.L., Gömer, A., Kallies, R., Dittmer, U., Steinmann, E., Todt, D. (2024):
  Monitoring of hepatitis E virus in wastewater can identify clinically relevant variants
  Liver Int. 44 (3), 637 - 643 10.1111/liv.15842
• Rojas-Serrano, F., Garcia-Garcia, G., Parra-López, C., Sayadi-Gmada, S. (2024):
  Sustainability, circular economy and bioeconomy: A conceptual review and integration into the notion of sustainable circular bioeconomy
  New Medit 23 (2), 3 - 22 10.30682/nm2402a
• Shan, Y., Hao, H., Yin, Y., Hu, N., Zhan, M., Ma, D., Yin, Y., Jiao, W., Wick, L.Y. (2024):
  Effects of temperature and DC electric fields on perfluorooctanoic acid sorption kinetics to activated carbon
  Environ. Sci. Technol. 58 (13), 5987 - 5995 10.1021/acs.est.3c10590
• Shan, Y., Yin, Y., Wei, J., Ma, D., Zhan, M., Yin, Y., Yang, L., Jiao, W., Wick, L.Y. (2024):
  Mechanisms of heating-electrokinetic co-driven perfluorooctanoic acid (PFOA) adsorption on zeolite
  J. Environ. Sci. 146 , 264 - 271 10.1016/j.jes.2023.10.024
• Skliros, D., Kostakou, M., Kokkari, C., Tsertou, M.I., Pavloudi, C., Zafeiropoulos, H., Katharios, P., Flemetakis, E. (2024):
  Unveiling emerging opportunistic fish pathogens in aquaculture: A comprehensive seasonal study of microbial composition in Mediterranean fish hatcheries
  Microorganisms 12 (11), art. 2281 10.3390/microorganisms12112281
• Teixeira, G.M., Montanari, G.C.C., Nicoletto, M.L.A., da Silva, D.V., Noriler, S.A., de Oliveira, J.P., da Silva Rodrigues, M.V., Sanches, D.S., de Padua Pereira, U., Nunes da Rocha, U., de Oliveira, A.G. (2024):
  Draft genome of Bacillus velezensis CMRP6330, a suitable biocontrol agent for disease management in crops
  Microbiol. Resour. Ann. 13 (12), e00657-24 10.1128/mra.00657-24
• Vučić, V., Harms, H., Müller, S. (2024):
  Biological recovery of phosphorus (BioP-Rec) from wastewater streams using brewer’s yeast on pilot-scale
  Eng. Life Sci. 24 (2), e2300208 10.1002/elsc.202300208
• Vuilleumier, S., Barthelmebs, L., Corcoll, N., Hery, M., Karpouzas, D.G., Wick, L.Y. (2024):
  Editorial: thematic issue on microbial ecotoxicology
  FEMS Microbiol. Ecol. 100 (8), fiae097 10.1093/femsec/fiae097
• Wen, X., Chen, M., Ma, B., Xu, J., Zhu, T., Zou, Y., Liao, X., Wang, Y., Worrich, A., Wu, Y. (2024):
  Removal of antibiotic resistance genes during swine manure composting is strongly impaired by high levels of doxycycline residues
  Waste Manage. 177 , 76 - 85 10.1016/j.wasman.2024.01.037
• Wen, X., Xu, J., Wang, Y., Yang, X., Peng, G., Li, S., Ma, B., Zou, Y., Liao, X., Wang, Y., Worrich, A., Wu, Y. (2024):
  Community coalescence and plant host filtering determine the spread of tetracycline resistance genes from pig manure into the microbiome continuum of the soil–plant system
  Microbiol. Res. 284 , art. 127734 10.1016/j.micres.2024.127734
• Wen, X., Xu, J., Worrich, A., Li, X., Yuan, X., Ma, B., Zou, Y., Wang, Y., Liao, X., Wu, Y. (2024):
  Priority establishment of soil bacteria in rhizosphere limited the spread of tetracycline resistance genes from pig manure to soil-plant systems based on synthetic communities approach
  Environ. Int. 187 , art. 108732 10.1016/j.envint.2024.108732
• Yang, S., Di Lodovico, E., Rupp, A., Harms, H., Fricke, C., Miltner, A., Kaestner, M., Maskow, T. (2024):
  Enhancing insights: exploring the information content of calorespirometric ratio in dynamic soil microbial growth processes through calorimetry
  Front. Microbiol. 15 , art. 1321059 10.3389/fmicb.2024.1321059
• Ye, Y., Ghrayeb, M., Miercke, S., Arif, S., Müller, S., Mascher, T., Chai, L., Zaburdaev, V. (2024):
  Residual cells and nutrient availability guide wound healing in bacterial biofilms
  Soft Matter 20 (5), 1047 - 1060 10.1039/D3SM01032E
• Zhang, J., Lu, T., Song, Y., Nunes da Rocha, U., Liu, J., Nikolausz, M., Wei, Y., Richnow, H.H. (2024):
  Viral communities contribute more to the lysis of antibiotic-resistant bacteria than the transduction of antibiotic resistance genes in anaerobic digestion revealed by metagenomics
  Environ. Sci. Technol. 58 (5), 2346 - 2359 10.1021/acs.est.3c07664

2023 (75)

• Abdulkadir, N., Saraiva, J.P., Schattenberg, F., Brizola Toscan, R., Borim Correa, F., Harms, H., Müller, S., Nunes da Rocha, U. (2023):
  Combining flow cytometry and metagenomics improves recovery of metagenome-assembled genomes in a cell culture from activated sludge
  Microorganisms 11 (1), art. 175 10.3390/microorganisms11010175
• Álvarez-Barragán, J., Cravo-Laureau, C., Xiong, B., Wick, L.Y., Duran, R. (2023):
  Marine fungi select and transport aerobic and anaerobic bacterial populations from polycyclic aromatic hydrocarbon-contaminated sediments
  mBio 14 (2), e02761-22 10.1128/mbio.02761-22
• Amarante Colpo, R. (2023):
  rcolpo/pgp_reconstruction: First public release
  Version: v0.0.4-beta Zenodo 10.5281/zenodo.8205880
• Avila Santos, A.P., Kabiru Nata’ala, M., Kasmanas, J.C., Bartholomäus, A., Keller-Costa, T., Jurburg, S.D., Tal, T., Camarinha-Silva, A., Saraiva, J.P., de Carvalho, A.C.P.L.F., Stadler, P.F., Sipoli Sanches, D., Nunes da Rocha, U. (2023):
  The AnimalAssociatedMetagenomeDB reveals a bias towards livestock and developed countries and blind spots in functional-potential studies of animal-associated microbiomes
  Animal Microbiome 5 , art. 48 10.1186/s42523-023-00267-3
• Baleeiro, F.C.F., Raab, J., Kleinsteuber, S., Neumann, A., Sträuber, H. (2023):
  Mixotrophic chain elongation with syngas and lactate as electron donors
  Microb. Biotechnol. 16 (2), 322 - 336 10.1111/1751-7915.14163
• Baleeiro, F.C.F., Varchmin, L., Kleinsteuber, S., Sträuber, H., Neumann, A. (2023):
  Formate-induced CO tolerance and methanogenesis inhibition in fermentation of syngas and plant biomass for carboxylate production
  Biotechnol. Biofuels Bioprod. 16 , art. 26 10.1186/s13068-023-02271-w
• Bates, K.A., Friesen, J., Loyau, A., Butler, H., Vredenburg, V.T., Laufer, J., Chatzinotas, A., Schmeller, D.S. (2023):
  Environmental and anthropogenic factors shape the skin bacterial communities of a semi-arid amphibian species
  Microb. Ecol. 86 (2), 1393 - 1404 10.1007/s00248-022-02130-5
• Becker, D., Popp, D., Bonk, F., Kleinsteuber, S., Harms, H., Centler, F. (2023):
  Metagenomic analysis of anaerobic microbial communities degrading short-chain fatty acids as sole carbon sources
  Microorganisms 11 (2), art. 420 10.3390/microorganisms11020420
• Bonatelli, M.L., Rohwerder, T., Popp, D., Liu, Y., Akay, C., Schultz, C., Liao, K.-P., Ding, C., Reemtsma, T., Adrian, L., Kleinsteuber, S. (2023):
  Recently evolved combination of unique sulfatase and amidase genes enables bacterial degradation of the wastewater micropollutant acesulfame worldwide
  Front. Microbiol. 14 , art. 1223838 10.3389/fmicb.2023.1223838
• Borer, B., Magnúsdóttir, S. (2023):
  Data associated with publication "The media composition as a crucial element in high-throughput metabolic network reconstruction"
  Zenodo 10.5281/zenodo.7515886
• Borer, B., Magnúsdóttir, S. (2023):
  The media composition as a crucial element in high-throughput metabolic network reconstruction
  Interface Focus 13 (2), art. 20220070 10.1098/rsfs.2022.0070
• Boto, S.T., Bardl, B., Harnisch, F., Rosenbaum, M.A. (2023):
  Microbial electrosynthesis with Clostridium ljungdahlii benefits from hydrogen electron mediation and permits a greater variety of products
  Green Chem. 25 (11), 4375 - 4386 10.1039/D3GC00471F
• Bozan, M., Schmidt, M., Musat, N., Schmid, A., Adrian, L., Bühler, K. (2023):
  Spatial organization and proteome of a dual-species cyanobacterial biofilm alter among N₂-fixing and non-fixing conditions
  mSystems 8 (3), art. 00302-23 10.1128/msystems.00302-23
• Breulmann, M., Kallies, R., Bernhard, K., Gasch, A., Müller, R.A., Harms, H., Chatzinotas, A., van Afferden, M. (2023):
  A long-term passive sampling approach for wastewater-based monitoring of SARS-CoV-2 in Leipzig, Germany
  Sci. Total Environ. 887 , art. 164143 10.1016/j.scitotenv.2023.164143
• Buivydaitė, Ž., Aryal, L., Borim Corrêa, F., Chen, T., Langlois, V., Elberg, C.L., Netherway, T., Wang, R., Zhao, T., Acharya, B., Emerson, J.B., Hillary, L., Khadka, R.B., Mason-Jones, K., Sapkota, R., Sutela, S., Trubl, G., White III, R.A., Winding, A., Carreira, C. (2023):
  Meeting report: The first soil viral workshop 2022
  Virus Res. 331 , art. 199121 10.1016/j.virusres.2023.199121
• Çelik, G., Stolte, S., Müller, S., Schattenberg, F., Markiewicz, M. (2023):
  Environmental persistence assessment of heterocyclic polyaromatic hydrocarbons – Ultimate and primary biodegradability using adapted and non-adapted microbial communities
  J. Hazard. Mater. 460 , art. 132370 10.1016/j.jhazmat.2023.132370
• Chafra, F., Borim Correa, F., Oni, F., Konu Karakayalı, Ö., Stadler, P.F., Nunes da Rocha, U. (2023):
  StandEnA: a customizable workflow for standardized annotation and generating a presence–absence matrix of proteins
  Bioinform. Adv. 3 (1), vbad069 10.1093/bioadv/vbad069
• Chávez Morejón, M., Franz, A., Karande, R., Harnisch, F. (2023):
  Integrated electrosynthesis and biosynthesis for the production of adipic acid from lignin-derived phenols
  Green Chem. 25 (12), 4662 - 4666 10.1039/D3GC01105D
• Chávez Morejón, M., Kurig, N., Tschauder, Y.S., Harnisch, F., Palkovits, R. (2023):
  Electrochemical cellobiose valorization: Anodic oxidation to cellobionic acid and cathodic reduction to cellobitol
  ChemistrySelect 8 (27), e202301823 10.1002/slct.202301823
• Christgen, B., Spurr, M., Milner, E.M., Izadi, P., McCann, C., Yu, E., Curtis, T., Scott, K., Head, I.M. (2023):
  Does pre-enrichment of anodes with acetate to select for Geobacter spp. enhance performance of microbial fuel cells when switched to more complex substrates?
  Front. Microbiol. 14 , art. 1199286 10.3389/fmicb.2023.1199286
• Dai, S., Harnisch, F., Bin-Hudari, M.S., Keller, N.-S., Vogt, C., Korth, B. (2023):
  Improving the performance of bioelectrochemical sulfate removal by applying flow mode
  Microb. Biotechnol. 16 (3), 595 - 604 10.1111/1751-7915.14157
• de Carvalho, I., Apaza-Castillo, G.A., Paz, I.C.P., Guimarães, A.M., Quecine, M.C., Bonatelli, M.L. (2023):
  Draft genome sequence of the plant growth promoter and biocontrol agent Bacillus velezensis strain BIB0110
  Microbiol. Resour. Ann. 12 (6), e00231-23 10.1128/mra.00231-23
• Dzofou Ngoumelah, D., Harnisch, F., Sulheim, S., Heggeset, T.M.B., Aune, I.H., Wentzel, A., Kretzschmar, J. (2023):
  A unified and simple medium for growing model methanogens
  Front. Microbiol. 13 , art. 1046260 10.3389/fmicb.2022.1046260
• Dzofou Ngoumelah, D., Kuchenbuch, A., Harnisch, F., Kretzschmar, J. (2023):
  Combining Geobacter spp. dominated biofilms and anaerobic digestion effluents─The effect of effluent composition and electrode potential on biofilm activity and stability
  Environ. Sci. Technol. 57 (6), 2584 - 2594 10.1021/acs.est.2c07574
• Eisenhauer, N., Angst, G., Asato, A.E.B., Beugnon, R., Bönisch, E., Cesarz, S., Dietrich, P., Jurburg, S.D., Madaj, A.-M., Reuben, R.C., Ristok, C., Sünnemann, M., Yi, H., Guerra, C.A., Hines, J. (2023):
  The heterogeneity–diversity–system performance nexus
  Natl. Sci. Rev. 10 (7), nwad109 10.1093/nsr/nwad109
• Escher, B.I., Altenburger, R., Blüher, M., Colbourne, J.K., Ebinghaus, R., Fantke, P., Hein, M., Köck, W., Kümmerer, K., Leipold, S., Li, X., Scheringer, M., Scholz, S., Schloter, M., Schweizer, P.-J., Tal, T., Tetko, I., Traidl-Hoffmann, C., Wick, L.Y., Fenner, K. (2023):
  Modernizing persistence–bioaccumulation–toxicity (PBT) assessment with high throughput animal-free methods
  Arch. Toxicol. 97 (5), 1267 - 1283 10.1007/s00204-023-03485-5
• Glidden, C.K., Karakoç, C., Duan, C., Jiang, Y., Beechler, B., Jabbar, A., Jolles, A.E. (2023):
  Distinct life history strategies underpin clear patterns of succession in microparasite communities infecting a wild mammalian host
  Mol. Ecol. 32 (13), 3733 - 3746 10.1111/mec.16949
• Grosch Schroeder, B., İstanbullu, H.B., Schmidt, M., Logroño, W., Harms, H., Nikolausz, M. (2023):
  Effect of alkaline and mechanical pretreatment of wheat straw on methanogenic enrichment cultures from Pachnoda marginata larva gut
  Fermentation 9 (1), art. 60 10.3390/fermentation9010060
• Gu, L., Xiao, X., Lee, S.Y., Lai, B., Solem, C. (2023):
  Superior anodic electro-fermentation by enhancing capacity for extracellular electron transfer
  Bioresour. Technol. 389 , art. 129813 10.1016/j.biortech.2023.129813
• Guo, Y., Rosa, L.F.M., Shan, Y., Harnisch, F., Müller, S. (2023):
  Labor division of electroactive and carbon degrading microorganisms in bioelectrochemical laminar flow reactors
  J. Environ. Chem. Eng. 11 (5), art. 111074 10.1016/j.jece.2023.111074
• Haenelt, S., Wang, G., Kasmanas, J.C., Musat, F., Richnow, H.H., Nunes da Rocha, U., Müller, J.A., Musat, N. (2023):
  Corrigendum: The fate of sulfonamide resistance genes and anthropogenic pollution marker intI1 after discharge of wastewater into a pristine river stream (vol 14, 1058350, 2023)
  Front. Microbiol. 14 , art. 1208555 10.3389/fmicb.2023.1208555
• Haenelt, S., Wang, G., Kasmanas, J.C., Musat, F., Richnow, H.H., Nunes da Rocha, U., Müller, J.A., Musat, N. (2023):
  The fate of sulfonamide resistance genes and anthropogenic pollution marker intI1 after discharge of wastewater into a pristine river stream
  Front. Microbiol. 14 , art. 1058350 10.3389/fmicb.2023.1058350
• Hoffstadt, K., Cheenakula, D., Nikolausz, M., Krafft, S., Harms, H., Kuperjans, I. (2023):
  Design and construction of a new reactor for flexible biomethanation of hydrogen
  Fermentation 9 (8), art. 774 10.3390/fermentation9080774
• Höppner, J., Krohn, S., van den Munckhof, E.H.A., Kallies, R., Herber, A., Zeller, K., Tünnemann, J., Matz-Soja, M., Chatzinotas, A., Böhm, S., Hoffmeister, A., Berg, T., Engelmann, C. (2023):
  Changes of the bacterial composition in duodenal fluid from patients with liver cirrhosis and molecular bacterascites
  Sci. Rep. 13 , art. 23001 10.1038/s41598-023-49505-3
• Izadi, P., Kas, A., Haus, P., Harnisch, F. (2023):
  On the stability of electrochemical CO₂ reduction reaction to formate at indium electrodes at biocompatible conditions
  Electrochim. Acta 462 , art. 142733 10.1016/j.electacta.2023.142733
• Jurburg, S.D., Hom, E.F.Y., Chatzinotas, A. (2023):
  Beyond pathogenesis: Detecting the full spectrum of ecological interactions in the virosphere
  PLoS Biol. 21 (5), e3002109 10.1371/journal.pbio.3002109
• Kaesler, J.M., Lechtenfeld, O., Drabesch, S., Muehe, E.M. (2023):
  Liquid chromatorgraphy Fourier transform ion cyclotron resonance mass spectrometry (LC-FT-ICR MS) data of dissolved organic matter (DOM) from soil solution samples of climate and cadmium manipulated soils
  Data Investigation Portal UFZ 10.48758/ufz.14199
• Kallies, R., Hu, D., Abdulkadir, N., Schloter, M., Nunes da Rocha, U. (2023):
  Identification of huge phages from wastewater metagenomes
  Viruses 15 (12), art. 2330 10.3390/v15122330
• Kang, B.R., Kim, J.J., Hong, J.-K., Schlosser, D., Lee, T.K. (2023):
  Continuous operation of fungal wheel reactor based on solid-state fermentation for the removal of pharmaceutical and personal care products
  J. Environ. Manage. 331 , art. 117316 10.1016/j.jenvman.2023.117316
• Kas, A., Izadi, P., Harnisch, F. (2023):
  Front cover: High salt electrolyte solutions challenge the electrochemical CO₂ reduction reaction to formate at indium and tin cathodes (ChemElectroChem 23/2023)
  ChemElectroChem 10 (23), e202300656 10.1002/celc.202300656
• Kas, A., Izadi, P., Harnisch, F. (2023):
  Cover profile: High salt electrolyte solutions challenge the electrochemical CO₂ reduction reaction to formate at indium and tin cathodes
  ChemElectroChem 10 (23), e202300655 10.1002/celc.202300655
• Kas, A., Izadi, P., Harnisch, F. (2023):
  High salt electrolyte solutions challenge the electrochemical CO₂ reduction reaction to formate at indium and tin cathodes
  ChemElectroChem 10 (23), e202300311 10.1002/celc.202300311
• Kenkel, A., Karande, R., Bühler, K. (2023):
  Evaluating scaling of capillary photo‐biofilm reactors for high cell density cultivation of mixed trophies artificial microbial consortia
  Eng. Life Sci. 23 (9), e2300014 10.1002/elsc.202300014
• Khan, N., Muge, E., Mulaa, F.J., Wamalwa, B., von Bergen, M., Jehmlich, N., Wick, L.Y. (2023):
  Mycelial nutrient transfer promotes bacterial co-metabolic organochlorine pesticide degradation in nutrient-deprived environments
  ISME J. 17 (4), 570 - 578 10.1038/s41396-023-01371-7
• Knecht, C.A., Hinkel, M., Mäusezahl, I., Kaster, A.-K., Nivala, J., Müller, J.A. (2023):
  Identification of antibiotic resistance gene hosts in treatment wetlands using a single-cell based high-throughput approach
  Water 15 (13), art. 2432 10.3390/w15132432
• Korth, B., Pereira, J., Sleutels, T., Harnisch, F., ter Heijne, A. (2023):
  Comparing theoretical and practical biomass yields calls for revisiting thermodynamic growth models for electroactive microorganisms
  Water Res. 242 , art. 120279 10.1016/j.watres.2023.120279
• Lai, B., Krömer, J., Aulenta, F., Wu, H., Nikel, P.I. (2023):
  Exploiting synergies between microbial electrochemical technologies and synthetic biology
  Microb. Biotechnol. 16 (3), 485 - 488 10.1111/1751-7915.14208
• Le, A.V., Větrovský, T., Barucic, D., Saraiva, J.P., Dobbler, P.T., Kohout, P., Pospíšek, M., Nunes da Rocha, U., Kléma, J., Baldrian, P. (2023):
  Improved recovery and annotation of genes in metagenomes through the prediction of fungal introns
  Mol. Ecol. Resour. 23 (8), 1800 - 1811 10.1111/1755-0998.13852
• Li, S., Müller, S. (2023):
  Ecological forces dictate microbial community assembly processes in bioreactor systems
  Curr. Opin. Biotechnol. 81 , art. 102917 10.1016/j.copbio.2023.102917
• Liu, B., Sträuber, H., Centler, F., Harms, H., Nunes da Rocha, U., Kleinsteuber, S. (2023):
  Functional redundancy secures resilience of chain elongation communities upon pH shifts in closed bioreactor ecosystems
  Environ. Sci. Technol. 57 (46), 18350 - 18361 10.1021/acs.est.2c09573
• Logroño, W., Kleinsteuber, S., Kretzschmar, J., Harnisch, F., De Vrieze, J., Nikolausz, M. (2023):
  The microbiology of Power-to-X applications
  FEMS Microbiol. Rev. 47 (2), fuad013 10.1093/femsre/fuad013
• López-Gálvez, J., Schiessl, K., Besmer, M.D., Bruckmann, C., Harms, H., Müller, S. (2023):
  Development of an automated online flow cytometry method to quantify cell density and fingerprint bacterial communities
  Cells 12 (12), art. 1559 10.3390/cells12121559
• Lorca, G.L., Kleinsteuber, S. (2023):
  Women in microbial physiology and metabolism: 2022. Editorial
  Front. Microbiol. 14 , art. 1268568 10.3389/fmicb.2023.1268568
• Magnúsdóttir, S., Saraiva, J.P., Bartholomäus, A., Soheili, M., Brizola Toscan, R., Zhang, J., Nunes da Rocha, U. (2023):
  Metagenome-assembled genomes indicate that antimicrobial resistance genes are highly prevalent among urban bacteria and multidrug and glycopeptide resistances are ubiquitous in most taxa
  Front. Microbiol. 14 , art. 1037845 10.3389/fmicb.2023.1037845
• Opel, F., Itzenhäuser, M.A., Wehner, I., Lupacchini, S., Lauterbach, L., Lenz, O., Klähn, S. (2023):
  Towards a synthetic hydrogen sensor in cyanobacteria: Functional production of an oxygen-tolerant regulatory hydrogenase in Synechocystis sp. PCC 6803
  Front. Microbiol. 14 , art. 1122078 10.3389/fmicb.2023.1122078
• Pan, M., Wang, Y., Krömer, J.O., Zhu, X., Lin, M.K.T.H., Angelidaki, I. (2023):
  A coculture of photoautotrophs and hydrolytic heterotrophs enables efficient upcycling of starch from wastewater toward biomass-derived products: Synergistic interactions impacting metabolism of the consortium
  Environ. Sci. Technol. 57 (41), 15523 - 15532 10.1021/acs.est.3c05321
• Reuben, R.C., Beugnon, R., Jurburg, S.D. (2023):
  COVID-19 alters human microbiomes: a meta-analysis
  Front. Cell. Infect. Microbiol. 13 , art. 1211348 10.3389/fcimb.2023.1211348
• Reuben, R.C., Langer, D., Eisenhauer, N., Jurburg, S.D. (2023):
  Universal drivers of cheese microbiomes
  iScience 26 (1), art. 105744 10.1016/j.isci.2022.105744
• Rosado, P.M., Cardoso, P.M., Rosado, J.G., Schultz, J., Nunes da Rocha, U., Keller-Costa, T., Peixoto, R.S. (2023):
  Exploring the potential molecular mechanisms of interactions between a probiotic consortium and its coral host
  mSystems 8 (1), e00921-22 10.1128/msystems.00921-22
• Saeidi, N., Harnisch, F., Presser, V., Kopinke, F.-D., Georgi, A. (2023):
  Electrosorption of organic compounds: State of the art, challenges, performance, and perspectives
  Chem. Eng. J. 471 , art. 144354 10.1016/j.cej.2023.144354
• Saraiva, J.P., Bartholomäus, A., Brizola Toscan, R., Baldrian, P., Nunes da Rocha, U. (2023):
  Recovery of 197 eukaryotic bins reveals major challenges for eukaryote genome reconstruction from terrestrial metagenomes
  Mol. Ecol. Resour. 23 (5), 1066 - 1076 10.1111/1755-0998.13776
• Schneider, H., Lai, B., Krömer, J. (2023):
  Interference of electron transfer chain inhibitors in bioelectrochemical systems
  Electrochem. Commun. 152 , art. 107527 10.1016/j.elecom.2023.107527
• Schwab, L., Prinsen, L., Nowack, G., Popp, D., Noll, M., Vogt, C., Wagner, M. (2023):
  Sulfate reduction and homoacetogenesis at various hypersaline conditions: Implications for H₂ underground gas storage
  Front. Energy Res. 11 , art. 1125619 10.3389/fenrg.2023.1125619
• Silva, S.G., Homsi, M.N., Keller-Costa, T., Nunes da Rocha, U., Costa, R. (2023):
  Natural product biosynthetic potential reflects macroevolutionary diversification within a widely distributed bacterial taxon
  mSystems 8 (6), e00643-23 10.1128/msystems.00643-23
• Stöckl, M., Lange, T., Izadi, P., Bolat, S., Teetz, N., Harnisch, F., Holtmann, D. (2023):
  Application of gas diffusion electrodes in bioeconomy: An update
  Biotechnol. Bioeng. 120 (6), 1465 - 1477 10.1002/bit.28383
• Straessner, R., Nikolausz, M., Silve, A., Nazarova, N., Wuestner, R., Papachristou, I., Akaberi, S., Leber, K., Mueller, G., Frey, W. (2023):
  Holistic exploitation of pulsed electric field (PEF)-treated and lipid extracted microalgae Auxenochlorella protothecoides, utilizing anaerobic digestion (AD)
  Algal Res. 69 , art. 102950 10.1016/j.algal.2022.102950
• Toepel, J., Karande, R., Bühler, B., Bühler, K., Schmid, A. (2023):
  Photosynthesis driven continuous hydrogen production by diazotrophic cyanobacteria in high cell density capillary photobiofilm reactors
  Bioresour. Technol. 373 , art. 128703 10.1016/j.biortech.2023.128703
• Toepel, J., Karande, R., Klähn, S., Bühler, B. (2023):
  Cyanobacteria as whole-cell factories: current status and future prospectives
  Curr. Opin. Biotechnol. 80 , art. 102892 10.1016/j.copbio.2023.102892
• Tüllinghoff, A., Djaya-Mbissam, H., Toepel, J., Bühler, B. (2023):
  Light‐driven redox biocatalysis on gram‐scale in Synechocystis sp. PCC 6803 via an in vivo cascade
  Plant Biotechnol. J. 21 (10), 2074 - 2083 10.1111/pbi.14113
• Veen, J., Jang, H., Raubenheimer, D., van Pinxteren, B.O.C.M., Kandza, V., Meirmans, P.G., van Dam, N.M., Dunker, S., Hoffmann, P., Worrich, A., Janmaat, K.R.L. (2023):
  Development of embodied capital: diet composition, foraging skills, and botanical knowledge of forager children in the Congo Basin
  Front. Ecol. Evol. 11 , art. 935987 10.3389/fevo.2023.935987
• Wang, M., Ji, Q., Lai, B., Liu, Y., Mei, K. (2023):
  Structure-function and engineering of plant UDP-glycosyltransferase
  Comp. Struct. Biotechnol. J. 21 , 5358 - 5371 10.1016/j.csbj.2023.10.046
• Werner, K.A., Feyen, L., Hübner, T., Brüggemann, N., Prost, K., Grohmann, E. (2023):
  Fate of horizontal-gene-transfer markers and beta-lactamase genes during thermophilic composting of human excreta
  Microorganisms 11 (2), art. 308 10.3390/microorganisms11020308
• Wirsching, J., Chavez Rodriguez, L., Ditterich, F., Pagel, H., He, R., Uksa, M., Zwiener, C., Kandeler, E., Poll, C. (2023):
  Temperature and soil moisture change microbial allocation of pesticide-derived carbon
  Eur. J. Soil Sci. 74 (5), e13417 10.1111/ejss.13417
• Wolthuis, J.C., Magnúsdóttir, S., Stigter, E., Tang, Y.F., Jans, J., Gilbert, M., van der Hee, B., Langhout, P., Gerrits, W., Kies, A., de Ridder, J., van Mil, S. (2023):
  Multi-country metabolic signature discovery for chicken health classification
  Metabolomics 19 (2), art. 9 10.1007/s11306-023-01973-4
• Yang, S., Di Lodovico, E. (2023):
  Enhancing Insights: Exploring the Information Content of Calorespirometric Measurements in Dynamic Soil Processes (Version 1.0)
  Data Investigation Portal UFZ 10.48758/UFZ.14030

2022 (87)

• Abdollahi, M., Al Sbei, S., Rosenbaum, M.A., Harnisch, F. (2022):
  The oxygen dilemma: The challenge of the anode reaction for microbial electrosynthesis from CO₂
  Front. Microbiol. 13 , art. 947550 10.3389/fmicb.2022.947550
• Abramov, S.M., He, J., Wimmer, D., Muehe, E.M., Helle, T., Thorwarth, H., Kappler, A. (2022):
  Thiourea leaching of gold from processed municipal solid waste incineration residues
  J. Mater. Cycles Waste Manag. 24 (6), 2243 - 2254 10.1007/s10163-022-01476-9
• Bachmann, M., Wensch-Dorendorf, M., Kuhnitzsch, C., Kleinsteuber, S., Popp, D., Thierbach, A., Martens, S.D., Steinhöfel, O., Zeyner, A. (2022):
  Changes in composition and diversity of epiphytic microorganisms on field pea seeds, partial crop peas, and whole crop peas during maturation and ensiling with or without lactic acid bacteria inoculant
  Microbiol. Spectr. 10 (4), e00953-22 10.1128/spectrum.00953-22
• Baleeiro, F.C.F., Kleinsteuber, S., Sträuber, H. (2022):
  Recirculation of H₂, CO₂, and ethylene improves carbon fixation and carboxylate yields in anaerobic fermentation
  ACS Sustain. Chem. Eng. 10 (13), 4073 - 4081 10.1021/acssuschemeng.1c05133
• Bertê, R., Teixeira, G.M., de Oliveira, J.P., Nicoletto, M.L.A., da Silva, D.V., de Godoy, G.G., Sipoli Sanches, D., de Resende, J.T.V., de Padua Pereira, U., Nunes da Rocha, U., de Oliveira, A.G. (2022):
  Genome mining reveals high biosynthetic potential of biocontrol agent Bacillus velezensis B.BV10
  Genes 13 (11), art. 1984 10.3390/genes13111984
• Blombach, B., Grünberger, A., Centler, F., Wierckx, N., Schmid, J. (2022):
  Exploiting unconventional prokaryotic hosts for industrial biotechnology
  Trends Biotechnol. 40 (4), 385 - 397 10.1016/j.tibtech.2021.08.003
• Bonidia, R.P., Avila Santos, A.P., Almeida, B.L.S., Stadler, P.F., Nunes da Rocha, U., Sipoli Sanches, D., de Carvalho, A.C.P.L.F. (2022):
  Information theory for biological sequence classification: A novel feature extraction technique based on Tsallis entropy
  Entropy 24 (10), art. 1398 10.3390/e24101398
• Bonidia, R.P., Avila Santos, A.P., de Almeida, B.L.S., Stadler, P.F., Nunes da Rocha, U., Sanches, D.S., de Carvalho, A.C.P.L.F. (2022):
  BioAutoML: automated feature engineering and metalearning to predict noncoding RNAs in bacteria
  Brief. Bioinform. 23 (4), bbac218 10.1093/bib/bbac218
• Bozan, M., Popp, D., Kallies, R., Nunes da Rocha, U., Klähn, S., Bühler, K. (2022):
  Whole-genome sequence of the filamentous diazotrophic cyanobacterium Tolypothrix sp. PCC 7712 and its comparison with non-diazotrophic Tolypothrix sp. PCC 7601
  Front. Microbiol. 13 , art. 1042437 10.3389/fmicb.2022.1042437
• Braune, M., Yuan, B., Sträuber, H., Mcdowall, S.C., Nitzsche, R., Gröngröft, A. (2022):
  Corrigendum: A downstream processing cascade for separation of caproic and caprylic acid from maize silage-based fermentation broth
  Front. Bioeng. Biotechnol. 10 , art. 1049451 10.3389/fbioe.2022.1049451
• Bruckmann, C., Müller, S., Höner zu Siederdissen, C. (2022):
  Automatic, fast, hierarchical, and non-overlapping gating of flow cytometric data with flowEMMi v2
  Comp. Struct. Biotechnol. J. 20 , 6473 - 6489 10.1016/j.csbj.2022.11.033
• Bruckmann, C., Stadler, P.F., Hellmuth, M. (2022):
  From modular decomposition trees to rooted median graphs
  Discrete Appl. Math. 310 , 1 - 9 10.1016/j.dam.2021.12.017
• Cárdenas-Rey, I., d. J. Bello Gonzalez, T., van der Goot, J., Ceccarelli, D., Bouwhuis, G., Schillemans, D., Jurburg, S.D., Veldman, K.T., de Visser, J.A.G.M., Brouwer, M.S.M. (2022):
  Succession in the caecal microbiota of developing broilers colonised by extended-spectrum β-lactamase-producing Escherichia coli
  Animal Microbiome 4 , art. 51 10.1186/s42523-022-00199-4
• Chen, S.-C., Ji, J., Popp, D., Jaekel, U., Richnow, H.-H., Sievert, S.M., Musat, F. (2022):
  Genome and proteome analyses show the gaseous alkane degrader Desulfosarcina sp. strain BuS5 as an extreme metabolic specialist
  Environ. Microbiol. 24 (4), 1964 - 1976 10.1111/1462-2920.15956
• Dai, S., Korth, B., Schwab, L., Aulenta, F., Vogt, C., Harnisch, F. (2022):
  Deciphering the fate of sulfate in one- and two-chamber bioelectrochemical systems
  Electrochim. Acta 408 , art. 139942 10.1016/j.electacta.2022.139942
• Duong, H.L., Paufler, S., Harms, H., Maskow, T., Schlosser, D. (2022):
  Applicability and information value of biocalorimetry for the monitoring of fungal solid-state fermentation of lignocellulosic agricultural by-products
  New Biotech. 66 , 97 - 106 10.1016/j.nbt.2021.11.001
• Duong, H.L., Paufler, S., Harms, H., Schlosser, D., Maskow, T. (2022):
  Fungal lignocellulose utilization strategies from a bioenergetic perspective: Quantification of related functional traits using biocalorimetry
  Microorganisms 10 (8), art. 1675 10.3390/microorganisms10081675
• Eziuzor, S.C., Borim Corrêa, F., Peng, S., Schultz, J., Kleinsteuber, S., Nunes da Rocha, U., Adrian, L., Vogt, C. (2022):
  Structure and functional capacity of a benzene‐mineralizing, nitrate‐reducing microbial community
  J. Appl. Microbiol. 132 (4), 2795 - 2811 10.1111/jam.15443
• Gharasoo, M., Elsner, M., van Cappellen, P., Thullner, M. (2022):
  Pore-scale heterogeneities improve the degradation of a self-inhibiting substrate: Insights from reactive transport modeling
  Environ. Sci. Technol. 56 (18), 13008 - 13018 10.1021/acs.est.2c01433
• Golparvar, A. (2022):
  amirgolp/P3D-BRNS: v0.1.0-beta
  Zenodo 10.5281/zenodo.6301317
• Grosch Schroeder, B., Logroño, W., Nunes da Rocha, U., Harms, H., Nikolausz, M. (2022):
  Enrichment of anaerobic microbial communities from midgut and hindgut of sun beetle larvae (Pachnoda marginata) on wheat straw: effect of inoculum preparation
  Microorganisms 10 (4), art. 761 10.3390/microorganisms10040761
• Hallama, M., Pekrun, C., Mayer-Gruner, P., Uksa, M., Abdullaeva, Y., Pilz, S., Schloter, M., Lambers, H., Kandeler, E. (2022):
  The role of microbes in the increase of organic phosphorus availability in the rhizosheath of cover crops
  Plant Soil 476 (1-2), 353 - 373 10.1007/s11104-022-05340-5
• Hoffstadt, K., Krafft, S., Nikolausz, M., Kuperjans, I. (2022):
  Power-to-methane – Design and optimization of two new bubble column reactors
  Chem. Ing. Tech. 94 (9), 1323 - 1323 10.1002/cite.202255250
• Houwaart, T., Belhaj, S., Tawalbeh, E., Nagels, D., Fröhlich, Y., Finzer, P., Ciruela, P., Nunes da Rocha, U., Rosenstiel, P., et al. (2022):
  Integrated genomic surveillance enables tracing of person-to-person SARS-CoV-2 transmission chains during community transmission and reveals extensive onward transmission of travel-imported infections, Germany, June to July 2021
  Eurosurveillance 27 (43), art. 2101089 10.2807/1560-7917.ES.2022.27.43.2101089
• Izadi, P., Harnisch, F. (2022):
  Microbial | electrochemical CO₂ reduction: To integrate or not to integrate?
  Joule 6 (5), 935 - 940 10.1016/j.joule.2022.04.005
• Izadi, P., Schröder, U. (2022):
  What is the role of individual species within bidirectional electroactive microbial biofilms: A case study on Desulfarculus baarsii and Desulfurivibrio alkaliphilus
  ChemElectroChem 9 (2), e202101116 10.1002/celc.202101116
• Jadeja, N.B., Worrich, A. (2022):
  From gut to mud: dissemination of antimicrobial resistance between animal and agricultural niches
  Environ. Microbiol. 24 (8), 3290 - 3306 10.1111/1462-2920.15927
• Jensen Pedersen, K., Haange, S.-B., Žížalová, K., Viehof, A., Clavel, T., Leniček, M., Engelmann, B., Wick, L.Y., Schaap, F.G., Jehmlich, N., Rolle-Kampczyk, U., von Bergen, M. (2022):
  Eggerthella lenta DSM 2243 alleviates bile acid stress response in Clostridium ramosum and Anaerostipes caccae by transformation of bile acids
  Microorganisms 10 (10), art. 2025 10.3390/microorganisms10102025
• Jurburg, S.D., Buscot, F., Chatzinotas, A., Chaudhari, N.M., Clark, A.T., Garbowski, M., Grenié, M., Hom, E.F.Y., Karakoç, C., Marr, S., Neumann, S., Tarkka, M., van Dam, N.M., Weinhold, A., Heintz-Buschart, A. (2022):
  The community ecology perspective of omics data
  Microbiome 10 , art. 225 10.1186/s40168-022-01423-8
• Jurburg, S.D., Eisenhauer, N., Buscot, F., Chatzinotas, A., Chaudhari, N.M., Heintz-Buschart, A., Kallies, R., Küsel, K., Litchman, E., Macdonald, C.A., Müller, S., Reuben, R.C., Nunes da Rocha, U., Panagiotou, G., Rillig, M.C., Singh, B.K. (2022):
  Potential of microbiome-based solutions for agrifood systems
  Nat. Food 3 (8), 557 - 560 10.1038/s43016-022-00576-x
• Kabiru Nata’ala, M., Avila Santos, A.P., Kasmanas, J.C., Bartholomäus, A., Saraiva, J.P., Silva, S.G., Keller-Costa, T., Costa, R., Gomes, N.C.M., de Carvalho, A.C.P.L.F., Stadler, P.F., Sipoli Sanches, D., Nunes da Rocha, U. (2022):
  MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes
  Environ. Microbiome 17 , art. 57 10.1186/s40793-022-00449-7
• Kamjunke, N., Beckers, L.-M., Herzsprung, P., von Tümpling, W., Lechtenfeld, O., Tittel, J., Risse-Buhl, U., Rode, M., Wachholz, A., Kallies, R., Schulze, T., Krauss, M., Brack, W., Comero, S., Gawlik, B.M., Skejo, H., Tavazzi, S., Mariani, G., Borchardt, D., Weitere, M. (2022):
  Lagrangian profiles of riverine autotrophy, organic matter transformation, and micropollutants at extreme drought
  Sci. Total Environ. 828 , art. 154243 10.1016/j.scitotenv.2022.154243
• Karagulyan, M., Goebel, M.-O., Diehl, D., Abu Quba, A.A., Kästner, M., Bachmann, J., Wick, L.Y., Schaumann, G.E., Miltner, A. (2022):
  Water stress-driven changes in bacterial cell surface properties
  Appl. Environ. Microb. 88 (21), e00732-22 10.1128/aem.00732-22
• Keller-Costa, T., Kozma, L., Silva, S.G., Toscan, R., Gonçalves, J., Lago-Lestón, A., Kyrpides, N.C., Nunes da Rocha, U., Costa, R. (2022):
  Metagenomics-resolved genomics provides novel insights into chitin turnover, metabolic specialization, and niche partitioning in the octocoral microbiome
  Microbiome 10 , art. 151 10.1186/s40168-022-01343-7
• Khan, A.M., Gharasoo, M., Wick, L.Y., Thullner, M. (2022):
  Phase-specific stable isotope fractionation effects during combined gas-liquid phase exchange and biodegradation
  Environ. Pollut. 309 , art. 119737 10.1016/j.envpol.2022.119737
• Khan, N., Brizola Toscan, R., Lunayo, A., Wamalwa, B., Muge, E., Mulaa, F.J., Kallies, R., Harms, H., Wick, L.Y., Nunes da Rocha, U. (2022):
  Draft genome sequences of two Sphingobium species associated with hexachlorocyclohexane (HCH) degradation isolated from an HCH-contaminated soil
  Microbiol. Resour. Ann. 11 (3), e00886-21 10.1128/mra.00886-21
• Khurana, S., Heße, F., Hildebrandt, A., Thullner, M. (2022):
  Predicting the impact of spatial heterogeneity on microbially mediated nutrient cycling in the subsurface
  Biogeosciences 19 (3), 665 - 688 10.5194/bg-19-665-2022
• Khurana, S., Heße, F., Hildebrandt, A., Thullner, M. (2022):
  Should we worry about surficial dynamics when assessing nutrient cycling in the groundwater?
  Front. Water 4 , art. 780297 10.3389/frwa.2022.780297
• Knecht, C.A., Krüger, M., Kellmann, S., Mäusezahl, I., Möder, M., Adelowo, O.O., Vollmers, J., Kaster, A.-K., Nivala, J., Müller, J.A. (2022):
  Cellular stress affects the fate of microbial resistance to folate inhibitors in treatment wetlands
  Sci. Total Environ. 845 , art. 157318 10.1016/j.scitotenv.2022.157318
• Koók, L., Rosa, L.F.M., Harnisch, F., Žitka, J., Otmar, M., Nemestóthy, N., Bakonyi, P., Kretzschmar, J. (2022):
  Functional stability of novel homogeneous and heterogeneous cation exchange membranes for abiotic and microbial electrochemical technologies
  J. Membr. Sci. 658 , art. 120705 10.1016/j.memsci.2022.120705
• Korth, B., Pous, N., Hönig, R., Haus, P., Borim Corrêa, F., Nunes da Rocha, U., Puig, S., Harnisch, F. (2022):
  Electrochemical and microbial dissection of electrified biotrickling filters
  Front. Microbiol. 13 , art. 869474 10.3389/fmicb.2022.869474
• Koskimäki, J.J., Pohjanen, J., Kvist, J., Fester, T., Härtig, C., Podolich, O., Fluch, S., Edesi, J., Häggman, H., Pirttilä, A.M. (2022):
  The meristem-associated endosymbiont Methylorubrum extorquens DSM13060 reprograms development and stress responses of pine seedlings
  Tree Physiol. 42 (2), 391 - 410 10.1093/treephys/tpab102
• Krause, J.L., Engelmann, B., Nunes da Rocha, U., Pierzchalski, A., Chang, H.D., Zenclussen, A.C., von Bergen, M., Rolle-Kampczyk, U., Herberth, G. (2022):
  MAIT cell activation is reduced by direct and microbiota-mediated exposure to bisphenols
  Environ. Int. 158 , art. 106985 10.1016/j.envint.2021.106985
• Kuchenbuch, A., Frank, R., Vazquez Ramos, J., Jahnke, H.-G., Harnisch, F. (2022):
  Electrochemical microwell plate to study electroactive microorganisms in parallel and real-time
  Front. Bioeng. Biotechnol. 10 , art. 821734 10.3389/fbioe.2021.821734
• Kuhn, T., Buffi, M., Bindschedler, S., Chain, P.S., Gonzalez, D., Stanley, C.E., Wick, L.Y., Junier, P., Li Richter, X.-Y. (2022):
  Design and construction of 3D printed devices to investigate active and passive bacterial dispersal on hydrated surfaces
  BMC Biol. 20 , art. 203 10.1186/s12915-022-01406-z
• Le, A.V., Muehe, E.M., Drabesch, S., Pacheco, J.L., Bayer, T., Joshi, P., Kappler, A., Mansor, M. (2022):
  Environmental risk of arsenic mobilization from disposed sand filter materials
  Environ. Sci. Technol. 56 (23), 16822 - 16830 10.1021/acs.est.2c04915
• Li, S., Abdulkadir, N., Schattenberg, F., Nunes da Rocha, U., Grimm, V., Müller, S., Liu, Z. (2022):
  Stabilizing microbial communities by looped mass transfer
  Proc. Natl. Acad. Sci. U.S.A. 119 (17), e2117814119 10.1073/pnas.2117814119
• Li, S., Liu, Z., Süring, C., Müller, S., Zeng, P. (2022):
  The impact of the antibiotic fosfomycin on wastewater communities measured by flow cytometry
  Front. Microbiol. 12 , art. 737831 10.3389/fmicb.2021.737831
• Liu, B., Sträuber, H., Saraiva, J., Harms, H., Silva, S.G., Kasmanas, J.C., Kleinsteuber, S., Nunes da Rocha, U. (2022):
  Machine learning-assisted identification of bioindicators predicts medium-chain carboxylate production performance of an anaerobic mixed culture
  Microbiome 10 , art. 48 10.1186/s40168-021-01219-2
• Lo, H.-Y., Martínez-Lavanchy, P., Goris, T., Heider, J., Boll, M., Kaster, A.-K., Müller, J.A. (2022):
  IncP-type plasmids carrying genes for antibiotic resistance or for aromatic compound degradation are prevalent in sequenced Aromatoleum and Thauera strains
  Environ. Microbiol. 24 (12), 6411 - 6425 10.1111/1462-2920.16262
• Logroño, W., Kluge, P., Kleinsteuber, S., Harms, H., Nikolausz, M. (2022):
  Effect of inoculum microbial diversity in ex situ biomethanation of hydrogen
  Bioengineering-Basel 9 (11), art. 678 10.3390/bioengineering9110678
• Logroño, W., Nikolausz, M., Harms, H., Kleinsteuber, S. (2022):
  Physiological effects of 2-bromoethanesulfonate on hydrogenotrophic pure and mixed cultures
  Microorganisms 10 (2), art. 355 10.3390/microorganisms10020355
• López-Mondéjar, R., Tláskal, V., Nunes da Rocha, U., Baldrian, P. (2022):
  Global distribution of carbohydrate utilization potential in the prokaryotic tree of life
  mSystems 7 (6), e00829-22 10.1128/msystems.00829-22
• Mahecha, M.D., Bastos, A., Bohn, F.J., Eisenhauer, N., Feilhauer, H., Hartmann, H., Hickler, T., Kalesse-Los, H., Migliavacca, M., Otto, F.E.L., Peng, J., Quaas, J., Tegen, I., Weigelt, A., Wendisch, M., Wirth, C. (2022):
  Biodiversity loss and climate extremes — study the feedbacks
  Nature 612 (7938), 30 - 32 10.1038/d41586-022-04152-y
• Menezes Bergo, N., Torres-Ballesteros, A., Negrão Signori, C., Benites, M., Jovane, L., Murton, B.J., Nunes da Rocha, U., Pellizari, V.H. (2022):
  Spatial patterns of microbial diversity in Fe-Mn deposits and associated sediments in the Atlantic and Pacific oceans
  Sci. Total Environ. 837 , art. 155792 10.1016/j.scitotenv.2022.155792
• Neubert, K., Hell, M., Chávez Morejón, M., Harnisch, F. (2022):
  Hetero-coupling of bio-based medium chain carboxylic acids by Kolbe electrolysis enables high fuel yield and efficiency
  ChemSusChem 15 (21), e202201426 10.1002/cssc.202201426
• Oliveira Monteiro, L.M., Saraiva, J.P., Brizola Toscan, R., Stadler, P.F., Silva-Rocha, R., Nunes da Rocha, U. (2022):
  PredicTF: prediction of bacterial transcription factors in complex microbial communities using deep learning
  Environ. Microbiome 17 , art. 7 10.1186/s40793-021-00394-x
• Pozdnyakova, N., Dubrovskaya, E., Schlosser, D., Kuznetsova, S., Sigida, E., Grinev, V., Golubev, S., Kryuchkova, E., Varese, G.C., Turkovskaya, O. (2022):
  Widespread ability of ligninolytic fungi to degrade hazardous organic pollutants as the basis for the self-purification ability of natural ecosystems and for mycoremediation technologies
  Appl. Sci. 12 (4), art. 2164 10.3390/app12042164
• Puiggené, Ò., Cárdenas Espinosa, M.J., Schlosser, D., Thies, S., Jehmlich, N., Kappelmeyer, U., Schreiber, S., Wibberg, D., Kalinowski, J., Harms, H., Heipieper, H.J., Eberlein, C. (2022):
  Extracellular degradation of a polyurethane oligomer involving outer membrane vesicles and further insights on the degradation of 2,4-diaminotoluene in Pseudomonas capeferrum TDA1
  Sci. Rep. 12 , art. 2666 10.1038/s41598-022-06558-0
• Qin, W., Stärk, H.-J., Müller, S., Reemtsma, T. (2022):
  Exploring the extent of phosphorus and heavy metal uptake by single cells of Saccharomyces cerevisiae and their effects on intrinsic elements by SC-ICP-TOF-MS
  Front. Microbiol. 13 , art. 870931 10.3389/fmicb.2022.870931
• Robazza, A., Welter, C., Kubisch, C., Baleeiro, F.C.F., Ochsenreither, K., Neumann, A. (2022):
  Co-fermenting pyrolysis aqueous condensate and pyrolysis syngas with anaerobic microbial communities enables L-malate production in a secondary fermentative stage
  Fermentation 8 (10), art. 512 10.3390/fermentation8100512
• Scarabotti, F., Bühler, K., Schmidt, M., Harnisch, F. (2022):
  Thickness and roughness of transparent gold-palladium anodes have no impact on growth kinetics and yield coefficients of early-stage Geobacter sulfurreducens biofilms
  Bioelectrochemistry 144 , art. 108043 10.1016/j.bioelechem.2021.108043
• Scarabotti, F., Kuchenbuch, A., Kallies, R., Bühler, K., Harnisch, F. (2022):
  Towards real-time determination of yield coefficients of early-stage electroactive biofilms using optical microscopy
  Front. Energy Res. 10 , art. 920266 10.3389/fenrg.2022.920266
• Scholz, S., Brack, W., Escher, B.I., Hackermüller, J., Liess, M., von Bergen, M., Wick, L.Y., Zenclussen, A.C., Altenburger, R. (2022):
  The EU chemicals strategy for sustainability: an opportunity to develop new approaches for hazard and risk assessment
  Arch. Toxicol. 96 (8), 2381 - 2386 10.1007/s00204-022-03313-2
• Schultz, J., Argentino, I.C.V., Kallies, R., Nunes da Rocha, U., Rosado, A.S. (2022):
  Polyphasic analysis reveals potential petroleum hydrocarbon degradation and biosurfactant production by rare biosphere thermophilic bacteria from Deception Island, an active Antarctic volcano
  Front. Microbiol. 13 , art. 885557 10.3389/fmicb.2022.885557
• Schwab, L., Popp, D., Nowack, G., Bombach, P., Vogt, C., Richnow, H.H. (2022):
  Structural analysis of microbiomes from salt caverns used for underground gas storage
  Int. J. Hydrog. Energy 47 (47), 20684 - 20694 10.1016/j.ijhydene.2022.04.170
• Schwarz, E., Khurana, S., Chakrawal, A., Chavez Rodriguez, L., Wirsching, J., Streck, T., Manzoni, S., Thullner, M., Pagel, H. (2022):
  Spatial control of microbial pesticide degradation in soil: A model-based scenario analysis
  Environ. Sci. Technol. 56 (20), 14427 - 14438 10.1021/acs.est.2c03397
• Spake, R., Barajas-Barbosa, M.P., Blowes, S.A., Bowler, D.E., Callaghan, C.T., Garbowski, M., Jurburg, S.D., van Klink, R., Korell, L., Ladouceur, E., Rozzi, R., Viana, D.S., Xu, W.-B., Chase, J.M. (2022):
  Detecting thresholds of ecological change in the anthropocene
  Annu. Rev. Environ. Resour. 47 , 797 - 821 10.1146/annurev-environ-112420-015910
• Sturion Lorenzi, A., Bonatelli, M.L., Ahii Chia, M., Peressim, L., Quecine, M.C. (2022):
  Opposite sides of Pantoea agglomerans and its associated commercial outlook
  Microorganisms 10 (10), art. 2072 10.3390/microorganisms10102072
• Sun, F., Mellage, A., Wang, Z., Bakkour, R., Griebler, C., Thullner, M., Cirpka, O.A., Elsner, M. (2022):
  Toward improved bioremediation strategies: Response of BAM-degradation activity to concentration and flow changes in an inoculated bench-scale sediment tank
  Environ. Sci. Technol. 56 (7), 4050 - 4061 10.1021/acs.est.1c05259
• Teetz, N., Holtmann, D., Harnisch, F., Stöckl, M. (2022):
  Upgrading Kolbe electrolysis – Highly efficient production of green fuels and solvents by coupling biosynthesis and electrosynthesis
  Angew. Chem.-Int. Edit. 61 (50), e202210596 10.1002/anie.202210596
• Tucci, M., Cruz Viggi, C., Crognale, S., Matturro, B., Rossetti, S., Capriotti, A.L., Cavaliere, C., Cerrato, A., Montone, C.M., Harnisch, F., Aulenta, F. (2022):
  Insights into the syntrophic microbial electrochemical oxidation of toluene: a combined chemical, electrochemical, taxonomical, functional gene-based, and metaproteomic approach
  Sci. Total Environ. 850 , art. 157919 10.1016/j.scitotenv.2022.157919
• Tucci, M., Milani, A., Resitano, M., Cruz Viggi, C., Giampaoli, O., Miccheli, A., Crognale, S., Matturro, B., Rossetti, S., Harnisch, F., Aulenta, F. (2022):
  Syntrophy drives the microbial electrochemical oxidation of toluene in a continuous-flow “bioelectric well”
  J. Environ. Chem. Eng. 10 (3), art. 107799 10.1016/j.jece.2022.107799
• Undiandeye, J., Gallegos, D., Sträuber, H., Nelles, M., Stinner, W. (2022):
  Ensiling parameters in vertical columns and multiple kinetic models evaluation of biomethane potential of ensiled sugar beet leaves
  Biofuels-UK 13 (8), 995 - 1005 10.1080/17597269.2022.2059964
• Vasileiadis, S., Perruchon, C., Scheer, B., Adrian, L., Steinbach, N., Trevisan, M., Plaza-Bolaños, P., Agüera, A., Chatzinotas, A., Karpouzas, D.G. (2022):
  Nutritional inter-dependencies and a carbazole-dioxygenase are key elements of a bacterial consortium relying on a Sphingomonas for the degradation of the fungicide thiabendazole
  Environ. Microbiol. 24 (11), 5105 - 5122 10.1111/1462-2920.16116
• Walker, A., Houwaart, T., Finzer, P., Ehlkes, L., Tyshaieva, A., Damagnez, M., Strelow, D., Nunes da Rocha, U., Rosenstiel, P., et al. (2022):
  Characterization of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection clusters based on integrated genomic surveillance, outbreak analysis and contact tracing in an urban setting
  Clin. Infect. Dis. 74 (6), 1039 - 1046 10.1093/cid/ciab588
• Werner, K.A., Poehlein, A., Schneider, D., El-Said, K., Wöhrmann, M., Linkert, I., Hübner, T., Brüggemann, N., Prost, K., Daniel, R., Grohmann, E. (2022):
  Thermophilic composting of human feces: Development of bacterial community composition and antimicrobial resistance gene pool
  Front. Microbiol. 13 , art. 824834 10.3389/fmicb.2022.824834
• Werner, K.A., Schneider, D., Poehlein, A., Diederich, N., Feyen, L., Axtmann, K., Hübner, T., Brüggemann, N., Prost, K., Daniel, R., Grohmann, E. (2022):
  Metagenomic insights into the changes of antibiotic resistance and pathogenicity factor pools upon thermophilic composting of human excreta
  Front. Microbiol. 13 , art. 826071 10.3389/fmicb.2022.826071
• Xiong, B.-J., Kleinsteuber, S., Sträuber, H., Dusny, C., Harms, H., Wick, L.Y. (2022):
  Impact of fungal hyphae on growth and dispersal of obligate anaerobic bacteria in aerated habitats
  mBio 13 (3), e00769-22 10.1128/mbio.00769-22
• Xiong, B.-J., Stanley, C.E., Dusny, C., Schlosser, D., Harms, H., Wick, L.Y. (2022):
  pH distribution along growing fungal hyphae at microscale
  J. Fungi 8 (6), art. 599 10.3390/jof8060599
• You, X., Kallies, R., Hild, K., Hildebrandt, A., Harms, H., Chatzinotas, A., Wick, L.Y. (2022):
  Transport of marine tracer phage particles in soil
  Sci. Total Environ. 814 , art. 152704 10.1016/j.scitotenv.2021.152704
• You, X., Kallies, R., Kühn, I., Schmidt, M., Harms, H., Chatzinotas, A., Wick, L.Y. (2022):
  Phage co-transport with hyphal-riding bacteria fuels bacterial invasion in a water-unsaturated microbial model system
  ISME J. 16 (5), 1275 - 1283 10.1038/s41396-021-01155-x
• You, X., Klose, N., Kallies, R., Harms, H., Chatzinotas, A., Wick, L.Y. (2022):
  Mycelia-assisted isolation of non-host bacteria able to co-transport phages
  Viruses 14 (2), art. 195 10.3390/v14020195
• Zahn, M., König, G., Pham, H.V.C., Seroka, B., Lazny, R., Yang, G., Ouerfelli, O., Lotowski, Z., Rohwerder, T. (2022):
  Mechanistic details of the actinobacterial lyase-catalyzed degradation reaction of 2-hydroxyisobutyryl-CoA
  J. Biol. Chem. 298 (1), art. 101522 10.1016/j.jbc.2021.101522
• Zhang, X., Barceló, D., Clougherty, R.J., Gao, B., Harms, H., Tefsen, B., Vithanage, M., Wang, H., Wang, Z., Wells, M. (2022):
  “Potentially toxic element”─Something that means everything means nothing
  Environ. Sci. Technol. 56 (17), 11922 - 11925 10.1021/acs.est.2c03056
• Zhou, J., Saeidi, N., Wick, L.Y., Xie, Y., Kopinke, F.-D., Georgi, A. (2022):
  Efficient removal of trifluoroacetic acid from water using surface-modified activated carbon and electro-assisted desorption
  J. Hazard. Mater. 436 , art. 129051 10.1016/j.jhazmat.2022.129051
• Zhou, L.-J., Wang, Y.-Y., Li, S.-L., Cao, L., Jiang, F.-L., Maskow, T., Liu, Y. (2022):
  Core–shell polydopamine/Cu nanometer rods efficiently deactivate microbes by mimicking chloride-activated peroxidases
  ACS Omega 7 (34), 29984 - 29994 10.1021/acsomega.2c02986

2021 (64)

• Álvarez-Barragán, J., Cravo-Laureau, C., Wick, L.Y., Duran, R. (2021):
  Fungi in PAH-contaminated marine sediments: Cultivable diversity and tolerance capacity towards PAH
  Mar. Pollut. Bull. 164 , art. 112082 10.1016/j.marpolbul.2021.112082
• Aschenbrenner, A.C., Mouktaroudi, M., Krämer, B., Oestreich, M., Antonakos, N., Nuesch-Germano, M., Gkizeli, K., Nunes da Rocha, U., Rosenstiel, P., et al. (2021):
  Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients
  Genome Med. 13 , art. 7 10.1186/s13073-020-00823-5
• Baleeiro, F.C.F., Ardila, M.S., Kleinsteuber, S., Sträuber, H. (2021):
  Effect of oxygen contamination on propionate and caproate formation in anaerobic fermentation
  Front. Bioeng. Biotechnol. 9 , art. 725443 10.3389/fbioe.2021.725443
• Baleeiro, F.C.F., Kleinsteuber, S., Sträuber, H. (2021):
  Hydrogen as a co-electron donor for chain elongation with complex communities
  Front. Bioeng. Biotechnol. 9 , art. 650631 10.3389/fbioe.2021.650631
• Braune, M., Yuan, B., Sträuber, H., Mcdowall, S.C., Nitzsche, R., Gröngröft, A. (2021):
  A downstream processing cascade for separation of caproic and caprylic acid from maize silage-based fermentation broth
  Front. Bioeng. Biotechnol. 9 , art. 725578 10.3389/fbioe.2021.725578
• Calabrese, F., Stryhanyuk, H., Moraru, C., Schlömann, M., Wick, L.Y., Richnow, H.H., Musat, F., Musat, N. (2021):
  Metabolic history and metabolic fitness as drivers of anabolic heterogeneity in isogenic microbial populations
  Environ. Microbiol. 23 (11), 6764 - 6776 10.1111/1462-2920.15756
• Ceballos-Escalera, A., Pous, N., Chiluiza-Ramos, P., Korth, B., Harnisch, F., Bañeras, L., Balaguer, M.D., Puig, S. (2021):
  Electro-bioremediation of nitrate and arsenite polluted groundwater
  Water Res. 190 , art. 116748 10.1016/j.watres.2020.116748
• Clark, A.T., Arnoldi, J.-F., Zelnik, Y.R., Barabas, G., Hodapp, D., Karakoç, C., König, S., Radchuk, V., Donohue, I., Huth, A., Jacquet, C., de Mazancourt, C., Mentges, A., Nothaaß, D., Shoemaker, L.G., Taubert, F., Wiegand, T., Wang, S., Chase, J.M., Loreau, M., Harpole, S. (2021):
  General statistical scaling laws for stability in ecological systems
  Ecol. Lett. 24 (7), 1474 - 1486 10.1111/ele.13760
• Cohen, Y., Pasternak, Z., Müller, S., Hübschmann, T., Schattenberg, F., Sivakala, K.K., Abed-Rabbo, A., Chatzinotas, A., Jurkevitch, E. (2021):
  Community and single cell analyses reveal complex predatory interactions between bacteria in high diversity systems
  Nat. Commun. 12 , art. 5481 10.1038/s41467-021-25824-9
• da Rosa Braun, P.H., Canuto de Almeida e Silva, T., Rodrigo Quejigo, J., Kuchenbuch, A., Rezwan, K., Harnisch, F., Wilhelm, M. (2021):
  Impact of surface properties of porous SiOC‐based materials on the performance of Geobacter biofilm anodes
  ChemElectroChem 8 (5), 850 - 857 10.1002/celc.202001568
• Dalby, F.R., Nikolausz, M., Hansen, M.J., Feilberg, A. (2021):
  Effects of combined tannic acid/fluoride on sulfur transformations and methanogenic pathways in swine manure
  PLOS One 16 (9), art. e0257759 10.1371/journal.pone.0257759
• Dumke, R., de la Cruz Barron, M., Oertel, R., Helm, B., Kallies, R., Berendonk, T.U., Dalpke, A. (2021):
  Evaluation of two methods to concentrate SARS-CoV-2 from untreated wastewater
  Pathogens 10 (2), art. 195 10.3390/pathogens10020195
• Dzofou Ngoumelah, D., Harnisch, F., Kretzschmar, J. (2021):
  Benefits of age–Improved resistance of mature electroactive biofilm anodes in anaerobic digestion
  Environ. Sci. Technol. 55 (12), 8258 - 8266 10.1021/acs.est.0c07320
• Fricke, C., Klee, T., Richter, S., Paufler, S., Harms, H., Maskow, T. (2021):
  Numerical heat flow and transport simulation as a development tool for the design of isothermal microcalorimeters
  Thermochim. Acta 706 , art. 179070 10.1016/j.tca.2021.179070
• Golparvar, A., Kästner, M., Thullner, M. (2021):
  Pore-scale modeling of microbial activity: What we have and what we need
  Vadose Zone J. 20 (1), e20087 10.1002/vzj2.20087
• González-González, S., Astorga-Eló, M., Campos, M., Wick, L.Y., Acuña, J.J., Jorquera, M.A. (2021):
  Compost fungi allow for effective dispersal of putative PGP bacteria
  Agronomy-Basel 11 (8), art. 1567 10.3390/agronomy11081567
• Greinert, T., Vogel, K., Maskow, T., Held, C. (2021):
  New thermodynamic activity-based approach allows predicting the feasibility of glycolysis
  Sci. Rep. 11 , art. 6125 10.1038/s41598-021-85594-8
• Guerra, C.A., Bardgett, R.D., Caon, L., Crowther, T.W., Delgado-Baquerizo, M., Montanarella, L., Navarro, L.M., Orgiazzi, A., Singh, B.K., Tedersoo, L., Vargas-Rojas, R., Briones, M.J.I., Buscot, F., Cameron, E.K., Cesarz, S., Chatzinotas, A., Cowan, D.A., Djukic, I., van der Hoogen, J., Lehmann, A., Maestre, F.T., Marín, C., Reitz, T., Rillig, M.C., Smith, L.C., de Vries, F.T., Weigelt, A., Wall, D.H., Eisenhauer, N. (2021):
  Tracking, targeting, and conserving soil biodiversity - A monitoring and indicator system can inform policy
  Science 371 (6526), 239 - 241 10.1126/science.abd7926
• Harnisch, F., Chávez Morejón, M. (2021):
  Hydrogen from water is more than a fuel: Hydrogenations and hydrodeoxygenations for a biobased economy
  Chem. Rec. 21 (9), 2277 - 2289 10.1002/tcr.202100034
• Harnisch, F., Korth, B. (2021):
  First settlers persist
  Joule 5 (6), 1316 - 1319 10.1016/j.joule.2021.05.022
• Heeger, F., Bourne, E.C., Wurzbacher, C., Funke, E., Lipzen, A., He, G., Ng, V., Grigoriev, I.V., Schlosser, D., Monaghan, M.T. (2021):
  Evidence for lignocellulose-decomposing enzymes in the genome and transcriptome of the aquatic hyphomycete Clavariopsis aquatica
  J. Fungi 7 (10), art. 854 10.3390/jof7100854
• Heyse, J., Schattenberg, F., Rubbens, P., Müller, S., Waegeman, W., Boon, N., Props, R. (2021):
  Predicting the presence and abundance of bacterial taxa in environmental communities through flow cytometric fingerprinting
  mSystems 6 (5), e00551-21 10.1128/mSystems.00551-21
• Hofmann, P., Clark, A., Hoffmann, P., Chatzinotas, A., Harpole, W.S., Dunker, S. (2021):
  Beyond nitrogen: phosphorus - estimating the minimum niche dimensionality for resource competition between phytoplankton
  Ecol. Lett. 24 (4), 761 - 771 10.1111/ele.13695
• Kasmanas, J.C., Bartholomäus, A., Borim Corrêa, F., Tal, T., Jehmlich, N., Herberth, G., von Bergen, M., Stadler, P.F., de Carvalho, A.C.P.L.F., Nunes da Rocha, U. (2021):
  HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes
  Nucleic Acids Res. 49 (D1), D743 - D750 10.1093/nar/gkaa1031
• Keller, N.-S., Hornbruch, G., Lüders, K., Werban, U., Vogt, C., Kallies, R., Dahmke, A., Richnow, H.H. (2021):
  Monitoring of the effects of a temporally limited heat stress on microbial communities in a shallow aquifer
  Sci. Total Environ. 781 , art. 146377 10.1016/j.scitotenv.2021.146377
• Keller-Costa, T., Lago-Lestón, A., Saraiva, J.P., Toscan, R., Silva, S.G., Gonçalves, J., Cox, C.J., Kyrpides, N., Nunes da Rocha, U., Costa, R. (2021):
  Metagenomic insights into the taxonomy, function, and dysbiosis of prokaryotic communities in octocorals
  Microbiome 9 , art. 72 10.1186/s40168-021-01031-y
• Khan, N., Brizola Toscan, R., Lunayo, A., Wamalwa, B., Muge, E., Mulaa, F.J., Kallies, R., Harms, H., Wick, L.Y., Nunes da Rocha, U. (2021):
  Draft genome sequence of Fusarium equiseti K3, a fungal species isolated from hexachlorocyclohexane-contaminated soil
  Microbiol. Resour. Ann. 10 (47), e00885-21 10.1128/MRA.00885-21
• Korth, B., Heber, C., Normant-Saremba, M., Maskow, T., Harnisch, F. (2021):
  Precious data from tiny samples: Revealing the correlation between energy content and the chemical oxygen demand of municipal wastewater using micro-bomb combustion calorimetry
  Front. Energy Res. 9 , art. 705800 10.3389/fenrg.2021.705800
• Krämer, B., Knoll, R., Bonaguro, L., ToVinh, M., Raabe, J., Astaburuaga-García, R., Schulte-Schrepping, J., Nunes da Rocha, U., Rosenstiel, P., et al. (2021):
  Early IFN-α signatures and persistent dysfunction are distinguishing features of NK cells in severe COVID-19
  Immunity 54 (11), 2650 - 2669.e14 10.1016/j.immuni.2021.09.002
• Kretzschmar, J., Harnisch, F. (2021):
  Electrochemical impedance spectroscopy on biofilm electrodes – conclusive or euphonious?
  Curr. Opin. Electrochem. 29 , art. 100757 10.1016/j.coelec.2021.100757
• Li, D., Zhang, H., Xiang, H., Rasul, S., Fontmorin, J.-M., Izadi, P., Roldan, A., Taylor, R., Feng, Y., Banerji, L., Cowan, A., Yu, E.H., Xuan, J. (2021):
  How to go beyond C₁ products with electrochemical reduction of CO₂
  Sustain. Energ. Fuels 5 (23), 5893 - 5914 10.1039/d1se00861g
• Liess, M., Liebmann, L., Vormeier, P., Weisner, O., Altenburger, R., Borchardt, D., Brack, W., Chatzinotas, A., Escher, B., Foit, K., Gunold, R., Henz, S., Hitzfeld, K.L., Schmitt-Jansen, M., Kamjunke, N., Kaske, O., Knillmann, S., Krauss, M., Küster, E., Link, M., Lück, M., Möder, M., Müller, A., Paschke, A., Schäfer, R.B., Schneeweiss, A., Schreiner, V.C., Schulze, T., Schüürmann, G., von Tümpling, W., Weitere, M., Wogram, J., Reemtsma, T. (2021):
  Pesticides are the dominant stressors for vulnerable insects in lowland streams
  Water Res. 201 , art. 117262 10.1016/j.watres.2021.117262
• Logroño, W., Popp, D., Nikolausz, M., Kluge, P., Harms, H., Kleinsteuber, S. (2021):
  Microbial communities in flexible biomethanation of hydrogen are functionally resilient upon starvation
  Front. Microbiol. 12 , art. 619632 10.3389/fmicb.2021.619632
• Melkonian, C., Fillinger, L., Atashgahi, S., Nunes da Rocha, U., Kuiper, E., Olivier, B., Braster, M., Gottstein, W., Helmus, R., Parsons, J.R., Smidt, H., van der Waals, M., Gerritse, J., Brandt, B.W., Röling, W.F.M., Molenaar, D., van Spanning, R.J.M. (2021):
  Author correction: High biodiversity in a benzene-degrading nitrate-reducing culture is sustained by a few primary consumers (Communications biology (2021) 4 1 (530))
  Commun. Biol. 4 , art. 774 10.1038/s42003-021-02311-x
• Melkonian, C., Fillinger, L., Atashgahi, S., Nunes da Rocha, U., Kuiper, E., Olivier, B., Braster, M., Gottstein, W., Helmus, R., Parsons, J.R., Smidt, H., van der Waals, M., Gerritse, J., Brandt, B.W., Röling, W.F.M., Molenaar, D., van Spanning, R.J.M. (2021):
  High biodiversity in a benzene-degrading nitrate-reducing culture is sustained by a few primary consumers
  Commun. Biol. 4 , art. 530 10.1038/s42003-021-01948-y
• Metze, D., Popp, D., Schwab, L., Keller, N.-S., Nunes da Rocha, U., Richnow, H.-H., Vogt, C. (2021):
  Temperature management potentially affects carbon mineralization capacity and microbial community composition of a shallow aquifer
  FEMS Microbiol. Ecol. 97 (2), fiaa261 10.1093/femsec/fiaa261
• Müller, C., Knöller, K., Lucas, R., Kleinsteuber, S., Trabitzsch, R., Weiß, H., Stollberg, R., Richnow, H.H., Vogt, C. (2021):
  Benzene degradation in contaminated aquifers: Enhancing natural attenuation by injecting nitrate
  J. Contam. Hydrol. 238 , art. 103759 10.1016/j.jconhyd.2020.103759
• Neubert, K., Kretzschmar, J., dos Santos, T.R., Härtig, C., Harnisch, F. (2021):
  Making sense of gas measurements: quantification of multicomponent gas mixtures in biological and chemical laboratory experiments
  ChemTexts 7 (4), art. 27 10.1007/s40828-021-00151-0
• Neubert, K., Schmidt, M., Harnisch, F. (2021):
  Platinized titanium as alternative cost-effective anodes for the efficient Kolbe electrolysis in aqueous electrolyte solutions
  ChemSusChem 14 (15), 3097 - 3109 10.1002/cssc.202100854
• Oliveira, V., Polónia, A.R.M., Cleary, D.F.R., Huang, Y.M., de Voogd, N.J., Nunes da Rocha, U., Gomes, N.C.M. (2021):
  Characterization of putative circular plasmids in sponge‐associated bacterial communities using a selective multiply‐primed rolling circle amplification
  Mol. Ecol. Resour. 21 (1), 110 - 121 10.1111/1755-0998.13248
• Pous, N., Korth, B., Osset-Álvarez, M., Balaguer, M.D., Harnisch, F., Puig, S. (2021):
  Electrifying biotrickling filters for the treatment of aquaponics wastewater
  Bioresour. Technol. 319 , art. 124221 10.1016/j.biortech.2020.124221
• Qin, W., Stärk, H.-J., Müller, S., Reemtsma, T., Wagner, S. (2021):
  Determination of elemental distribution and evaluation of elemental concentration in single Saccharomyces cerevisiae cells using single cell-inductively coupled plasma mass spectrometry
  Metallomics 13 (6), mfab032 10.1093/mtomcs/mfab032
• Rago, L., Popp, D., Heiker, J.T., Harnisch, F. (2021):
  Electroactive microorganisms in mouse feces
  Electrochim. Acta 365 , art. 137326 10.1016/j.electacta.2020.137326
• Rodrigo Quejigo, J., Korth, B., Kuchenbuch, A., Harnisch, F. (2021):
  Redox potential heterogeneity in fixed bed electrodes leads to microbial stratification and inhomogeneous performance
  ChemSusChem 14 (4), 1155 - 1165 10.1002/cssc.202002611
• Rossi, C., Zadra, N., Fevola, C., Ecke, F., Hörnfeldt, B., Kallies, R., Kazimirova, M., Magnusson, M., Olsson, G.E., Ulrich, R.G., Jääskeläinen, A.J., Henttonen, H., Hauffe, H.C. (2021):
  Evolutionary relationships of Ljungan virus variants circulating in multi-host systems across Europe
  Viruses 13 (7), art. 1317 10.3390/v13071317
• Rummel, C.D., Lechtenfeld, O.J., Kallies, R., Benke, A., Herzsprung, P., Rynek, R., Wagner, S., Potthoff, A., Jahnke, A., Schmitt-Jansen, M. (2021):
  Conditioning film and early biofilm succession on plastic surfaces
  Environ. Sci. Technol. 55 (16), 11006 - 11018 10.1021/acs.est.0c07875
• Santoro, C., Babanova, S., Cristiani, P., Artyushkova, K., Atanassov, P., Bergel, A., Bretschger, O., Brown, R.K., Carpenter, K., Colombo, A., Cortese, R., Erable, B., Harnisch, F., Kodali, M., Phadke, S., Riedl, S., Rosa, L.F.M., Schröder, G. (2021):
  How comparable are microbial electrochemical systems around the globe? An electrochemical and microbiological cross‐laboratory study
  ChemSusChem 14 (11), 2313 - 2330 10.1002/cssc.202100294
• Santoro, C., Babanova, S., Cristiani, P., Artyushkova, K., Atanassov, P., Bergel, A., Bretschger, O., Brown, R.K., Carpenter, K., Colombo, A., Cortese, R., Erable, B., Harnisch, F., Kodali, M., Phadke, S., Riedl, S., Rosa, L.F.M., Schröder, U. (2021):
  Cover profile: How comparable are microbial electrochemical systems around the globe? An electrochemical and microbiological cross‐laboratory study
  ChemSusChem 14 (11), 2267 - 2267 10.1002/cssc.202100824
• Saraiva, J.P., Bartholomäus, A., Kallies, R., Gomes, M., Bicalho, M., Kasmanas, J.C., Vogt, C., Chatzinotas, A., Stadler, P., Dias, O., Nunes da Rocha, U. (2021):
  OrtSuite: from genomes to prediction of microbial interactions within targeted ecosystem processes
  Life Sci. Alliance 4 (12), e202101167 10.26508/lsa.202101167
• Saraiva, J.P., Worrich, A., Karakoç, C., Kallies, R., Chatzinotas, A., Centler, F., Nunes da Rocha, U. (2021):
  Mining synergistic microbial interactions: a roadmap on how to integrate multi-omics data
  Microorganisms 9 (4), art. 840 10.3390/microorganisms9040840
• Scarabotti, F., Rago, L., Bühler, K., Harnisch, F. (2021):
  The electrode potential determines the yield coefficients of early-stage Geobacter sulfurreducens biofilm anodes
  Bioelectrochemistry 140 , art. 107752 10.1016/j.bioelechem.2021.107752
• Schmidt, J., Krohn, S., Kallies, R., Schneider, H., Zeller, K., Ziebolz, D., Berg, T., Haak, R. (2021):
  Antibacterial effect of a brominated self-etch adhesive on carious dentin - An in vivo study
  J. Dent. 105 , art. 103555 10.1016/j.jdent.2020.103555
• Sun, F., Mellage, A., Gharasoo, M., Melsbach, A., Cao, X., Zimmermann, R., Griebler, C., Thullner, M., Cirpka, O.A., Elsner, M. (2021):
  Mass-transfer-limited biodegradation at low concentrations—Evidence from reactive transport modeling of isotope profiles in a bench-scale aquifer
  Environ. Sci. Technol. 55 (11), 7386 - 7397 10.1021/acs.est.0c08566
• Sun, F., Peters, J., Thullner, M., Cirpka, O.A., Elsner, M. (2021):
  Magnitude of diffusion- and transverse dispersion-induced isotope fractionation of organic compounds in aqueous systems
  Environ. Sci. Technol. 55 (8), 4772 - 4782 10.1021/acs.est.0c06741
• Tláskal, V., Brabcová, V., Větrovský, T., Jomura, M., López-Mondéjar, R., Oliveira Monteiro, L.M., Saraiva, J.P., Human, Z.R., Cajthaml, T., Nunes da Rocha, U., Baldrian, P. (2021):
  Complementary roles of wood-inhabiting fungi and bacteria facilitate deadwood decomposition
  mSystems 6 (1), e01078-20 10.1128/mSystems.01078-20
• Tláskal, V., Brabcová, V., Větrovský, T., López-Mondéjar, R., Oliveira Monteiro, L.M., Saraiva, J.P., Nunes da Rocha, U., Baldrian, P. (2021):
  Metagenomes, metatranscriptomes and microbiomes of naturally decomposing deadwood
  Sci. Data 8 , art. 198 10.1038/s41597-021-00987-8
• Tucci, M., Cruz Viggi, C., Resitano, M., Matturro, B., Crognale, S., Pietrini, I., Rossetti, S., Harnisch, F., Aulenta, F. (2021):
  Simultaneous removal of hydrocarbons and sulfate from groundwater using a “bioelectric well”
  Electrochim. Acta 388 , art. 138636 10.1016/j.electacta.2021.138636
• Vogel, K., Wei, R., Pfaff, L., Breite, D., Al-Fathi, H., Ortmann, C., Estrela-Lopis, I., Venus, T., Schulze, A., Harms, H., Bornscheuer, U.T., Maskow, T. (2021):
  Enzymatic degradation of polyethylene terephthalate nanoplastics analyzed in real time by isothermal titration calorimetry
  Sci. Total Environ. 773 , art. 145111 10.1016/j.scitotenv.2021.145111
• Voigt, E., Rall, B.C., Chatzinotas, A., Brose, U., Rosenbaum, B. (2021):
  Phage strategies facilitate bacterial coexistence under environmental variability
  PeerJ 9 , art. e12194 10.7717/peerj.12194
• Vučić, V., Müller, S. (2021):
  New developments in biological phosphorus accessibility and recovery approaches from soil and waste streams
  Eng. Life Sci. 21 (3-4), 77 - 86 10.1002/elsc.202000076
• Vučić, V., Süring, C., Harms, H., Müller, S., Günther, S. (2021):
  A framework for P-cycle assessment in wastewater treatment plants
  Sci. Total Environ. 760 , art. 143392 10.1016/j.scitotenv.2020.143392
• Warnat-Herresthal, S., Schultze, H., Shastry, K.L., Manamohan, S., Mukherjee, S., Garg, V., Sarveswara, R., Händler, K., Nunes da Rocha, U., Rosenstiel, P., et al. (2021):
  Swarm Learning for decentralized and confidential clinical machine learning
  Nature 594 (7862), 265 - 270 10.1038/s41586-021-03583-3
• Weitere, M., Altenburger, R., Anlanger, C., Baborowski, M., Bärlund, I., Beckers, L.-M., Borchardt, D., Brack, W., Brase, L., Busch, W., Chatzinotas, A., Deutschmann, B., Eligehausen, J., Frank, K., Graeber, D., Griebler, C., Hagemann, J., Herzsprung, P., Hollert, H., Inostroza, P.A., Jäger, C.G., Kallies, R., Kamjunke, N., Karrasch, B., Kaschuba, S., Kaus, A., Klauer, B., Knöller, K., Koschorreck, M., Krauss, M., Kunz, J.V., Kurz, M.J., Liess, M., Mages, M., Müller, C., Muschket, M., Musolff, A., Norf, H., Pöhlein, F., Reiber, L., Risse-Buhl, U., Schramm, K.-W., Schmitt-Jansen, M., Schmitz, M., Strachauer, U., von Tümpling, W., Weber, N., Wild, R., Wolf, C., Brauns, M. (2021):
  Disentangling multiple chemical and non-chemical stressors in a lotic ecosystem using a longitudinal approach
  Sci. Total Environ. 769 , art. 144324 10.1016/j.scitotenv.2020.144324
• Zhou, J., Saeidi, N., Wick, L.Y., Kopinke, F.-D., Georgi, A. (2021):
  Adsorption of polar and ionic organic compounds on activated carbon: Surface chemistry matters
  Sci. Total Environ. 794 , art. 148508 10.1016/j.scitotenv.2021.148508

2020 (60)

• Alvarez Esquivel, D.Y., Guo, Y., Brown, R.K., Müller, S., Schröder, U., Harnisch, F. (2020):
  Investigating community dynamics and performance during microbial electrochemical degradation of whey
  ChemElectroChem 7 (4), 989 - 997 10.1002/celc.201902109
• Askitosari, T.D., Berger, C., Tiso, T., Harnisch, F., Blank, L.M., Rosenbaum, M.A. (2020):
  Coupling an electroactive Pseudomonas putida KT2440 with bioelectrochemical rhamnolipid production
  Microorganisms 8 (12), art. 1959 10.3390/microorganisms8121959
• Balciunas, E.M., Kappelmeyer, U., Harms, H., Heipieper, H.J. (2020):
  Increasing ibuprofen degradation in constructed wetlands by bioaugmentation with gravel containing biofilms of an ibuprofen-degrading Sphingobium yanoikuyae
  Eng. Life Sci. 20 (5-6), 160 - 167 10.1002/elsc.201900097
• Banitz, T., Chatzinotas, A., Worrich, A. (2020):
  Prospects for integrating disturbances, biodiversity and ecosystem functioning using microbial systems
  Front. Ecol. Evol. 8 , art. 21 10.3389/fevo.2020.00021
• Becker, D., Popp, D., Harms, H., Centler, F. (2020):
  A modular metagenomics pipeline allowing for the inclusion of prior knowledge using the example of anaerobic digestion
  Microorganisms 8 (5), art. 669 10.3390/microorganisms8050669
• Bernardes, J.P., Mishra, N., Tran, F., Bahmer, T., Best, L., Blase, J.I., Bordoni, D., Franzenburg, J., Geisen, U., Josephs-Spaulding, J., Köhler, P., Künstner, A., Rosati, E., Aschenbrenner, A.C., Bacher, P., Baran, N., Boysen, T., Brandt, B., Bruse, N., Dörr, J., Dräger, A., Elke, G., Ellinghaus, D., Fischer, J., Forster, M., Franke, A., Franzenburg, S., Frey, N., Friedrichs, A., Fuß, J., Glück, A., Hamm, J., Hinrichsen, F., Hoeppner, M.P., Imm, S., Junker, R., Kaiser, S., Kan, Y.H., Knoll, R., Lange, C., Laue, G., Lier, C., Lindner, M., Marinos, G., Markewitz, R., Nattermann, J., Noth, R., Pickkers, P., Rabe, K.F., Renz, A., Röcken, C., Rupp, J., Schaffarzyk, A., Scheffold, A., Schulte-Schrepping, J., Schunk, D., Skowasch, D., Ulas, T., Wandinger, K.-P., Wittig, M., Zimmermann, J., Busch, H., Hoyer, B.F., Kaleta, C., Heyckendorf, J., Kox, M., Rybniker, J., Schreiber, S., Schultze, J.L., Rosenstiel, P., Banovich, N.E., Desai, T., Eickelberg, O., Haniffa, M., Horvath, P., Kropski, J.A., Lafyatis, R., Lundeberg, J., Meyer, K., Nawijn, M.C., Nikolic, M., Montanes, J.O., Pe’er, D., Tata, P.R., Rawlins, E., Regev, A., Reyfman, P., Samakovlis, C., Schultze, J., Shalek, A., Shepherd, D., Spence, J., Teichmann, S., Theis, F., Tsankov, A., van den Berge, M., von Papen, M., Whitsett, J., Zaragosi, L.E., Angelov, A., Bals, R., Bartholomäus, A., Becker, A., Bezdan, D., Bonifacio, E., Bork, P., Clavel, T., Colme-Tatche, M., Diefenbach, A., Dilthey, A., Fischer, N., Förstner, K., Frick, J.-S., Gagneur, J., Goesmann, A., Hain, T., Hummel, M., Janssen, S., Kalinowski, J., Kallies, R., Kehr, B., Keller, A., Kim-Hellmuth, S., Klein, C., Kohlbacher, O., Korbel, J.O., Kurth, I., Landthaler, M., Li, Y., Ludwig, K., Makarewicz, O., Marz, M., McHardy, A., Mertes, C., Nöthen, M., Nürnberg, P., Ohler, U., Ossowski, S., Overmann, J., Peter, S., Pfeffer, K., Poetsch, A.R., Pühler, A., Rajewsky, N., Ralser, M., Rieß, O., Ripke, S., Nunes da Rocha, U., Saliba, A.-E., Sander, L.E., Sawitzki, B., Schiffer, P., Schulte, E.-C., Sczyrba, A., Stegle, O., Stoye, J., Vehreschild, J., Vogel, J., von Kleist, M., Walker, A., Walter, J., Wieczorek, D., Ziebuhr, J. (2020):
  Longitudinal multi-omics analyses identify responses of megakaryocytes, erythroid cells, and plasmablasts as hallmarks of severe COVID-19
  Immunity 53 (6), 1296 - 1314 10.1016/j.immuni.2020.11.017
• Bernardo-Cravo, A.P., Schmeller, D.S., Chatzinotas, A., Vredenburg, V.T., Loyau, A. (2020):
  Environmental factors and host microbiomes shape host–pathogen dynamics
  Trends Parasitol. 36 (7), 616 - 633 10.1016/j.pt.2020.04.010
• Borim Corrêa, F., Saraiva, J.P., Stadler, P.F., Nunes da Rocha, U. (2020):
  TerrestrialMetagenomeDB: a public repository of curated and standardized metadata for terrestrial metagenomes
  Nucleic Acids Res. 48 (D1), D626 - D632 10.1093/nar/gkz994
• Carstens, L., Cowan, A.R., Seiwert, B., Schlosser, D. (2020):
  Biotransformation of phthalate plasticizers and bisphenol A by marine-derived, freshwater, and terrestrial fungi
  Front. Microbiol. 11 , art. 317 10.3389/fmicb.2020.00317
• Centler, F., Günnigmann, S., Fetzer, I., Wendeberg, A. (2020):
  Keystone species and modularity in microbial hydrocarbon degradation uncovered by network analysis and association rule mining
  Microorganisms 8 (2), art. 190 10.3390/microorganisms8020190
• Chen, S.-C., Sun, G.-X., Yan, Y., Konstantinidis, K.T., Zhang, S.-Y., Deng, Y., Li, X.-M., Cui, H.-L., Musat, F., Popp, D., Rosen, B.P., Zhu, Y.-G. (2020):
  The Great Oxidation Event expanded the genetic repertoire of arsenic metabolism and cycling
  Proc. Natl. Acad. Sci. U.S.A. 117 (19), 10414 - 10421 10.1073/pnas.2001063117
• Cichocki, N., Hübschmann, T., Schattenberg, F., Kerckhof, F.M., Overmann, J., Müller, S. (2020):
  Bacterial mock communities as standards for reproducible cytometric microbiome analysis
  Nat. Protoc. 15 , 2788 - 2812 10.1038/s41596-020-0362-0
• Dalby, F.R., Hansen, M.J., Feilberg, A., Kümmel, S., Nikolausz, M. (2020):
  Effect of tannic acid combined with fluoride and lignosulfonic acid on anaerobic digestion in the agricultural waste management chain
  Bioresour. Technol. 307 , art. 123171 10.1016/j.biortech.2020.123171
• Feng, L., Lemes Perschke, Y.M., Fontaine, D., Nikolausz, M., Ward, A.J., Nunes da Rocha, U., Borim Corrêa, F., Eriksen, J., Sørensen, P., Møller, H.B. (2020):
  Anaerobic digestion of co-ensiled cover crop and barley straw: Effect of co-ensiling ratios, manure addition and impact on microbial community structure
  Ind. Crop. Prod. 144 , art. 112025 10.1016/j.indcrop.2019.112025
• Formann, S., Hahn, A., Janke, L., Stinner, W., Sträuber, H., Logroño, W., Nikolausz, M. (2020):
  Beyond sugar and ethanol production: Value generation opportunities through sugarcane residues
  Front. Energy Res. 8 , art. 579577 10.3389/fenrg.2020.579577
• Fricke, C., Harms, H., Maskow, T. (2020):
  How to speed up the detection of aerobic microbial contaminations by using isothermal microcalorimetry
  J. Therm. Anal. Calorim. 142 (5), 1933 - 1949 10.1007/s10973-020-09986-0
• Fricke, C., Xu, J., Jiang, F.-L., Liu, Y., Harms, H., Maskow, T. (2020):
  Rapid culture‐based detection of Legionella pneumophila using isothermal microcalorimetry with an improved evaluation method
  Microb. Biotechnol. 13 (4), 1262 - 1272 10.1111/1751-7915.13563
• Fruehauf, H.M., Enzmann, F., Harnisch, F., Ulber, R., Holtmann, D. (2020):
  Microbial electrosynthesis – An inventory on technology readiness level and performance of different process variants
  Biotechnol. J. 15 (10), art. 2000066 10.1002/biot.202000066
• Greinert, T., Vogel, K., Mühlenweg, J.-K., Sadowski, G., Maskow, T., Held, C. (2020):
  Standard Gibbs energy of metabolic reactions: VI. Glyceraldehyde 3-phosphate dehydrogenase reaction
  Fluid Phase Equilib. 517 , art. 112597 10.1016/j.fluid.2020.112597
• Greinert, T., Vogel, K., Seifert, A.I., Siewert, R., Andreeva, I.V., Verevkin, S.P., Maskow, T., Sadowski, G., Held, C. (2020):
  Standard Gibbs energy of metabolic reactions: V. Enolase reaction
  BBA-Proteins Proteomics 1868 (4), art. 140365 10.1016/j.bbapap.2020.140365
• Guerra, C.A., Heintz-Buschart, A., Sikorski, J., Chatzinotas, A., Guerrero-Ramírez, N., Cesarz, S., Beaumelle, L., Rillig, M.C., Maestre, F.T., Delgado-Baquerizo, M., Buscot, F., Overmann, J., Patoine, G., Phillips, H.R.P., Winter, M., Wubet, T., Küsel, K., Bardgett, R.D., Cameron, E.K., Cowan, D., Grebenc, T., Marín, C., Orgiazzi, A., Singh, B.K., Wall, D.H., Eisenhauer, N. (2020):
  Blind spots in global soil biodiversity and ecosystem function research
  Nat. Commun. 11 (1), art. 3870 10.1038/s41467-020-17688-2
• Guo, Y., Rosa, L.F.M., Müller, S., Harnisch, F. (2020):
  Monitoring stratification of anode biofilms in bioelectrochemical laminar flow reactors using flow cytometry
  Environ. Sci. Ecotechnol. 4 , art. 10062 10.1016/j.ese.2020.100062
• Haange, S.-B., Jehmlich, N., Krügel, U., Hintschich, C., Wehrmann, D., Hankir, M., Seyfried, F., Froment, J., Hübschmann, T., Müller, S., Wissenbach, D.K., Kang, K.H., Buettner, C., Panagiotou, G., Noll, M., Rolle-Kampczyk, U., Fenske, W., von Bergen, M. (2020):
  Gastric bypass surgery in a rat model alters the community structure and functional composition of the intestinal microbiota independently of weight loss
  Microbiome 8 , art. 13 10.1186/s40168-020-0788-1
• Hegner, R., Neubert, K., Kroner, C., Holtmann, D., Harnisch, F. (2020):
  Coupled electrochemical and microbial catalysis for the production of polymer bricks
  ChemSusChem 13 (19), 5295 - 5300 10.1002/cssc.202001272
• Karakoç, C., Clark, A.T., Chatzinotas, A. (2020):
  Diversity and coexistence are influenced by time-dependent species interactions in a predator-prey system
  Ecol. Lett. 23 (6), 983 - 993 10.1111/ele.13500
• Koch, C., Kuchenbuch, A., Marosvölgyi, M., Weisshart, K., Harnisch, F. (2020):
  Label‐free four‐dimensional visualization of anaerobically growing electroactive biofilms
  Cytom. Part A 97 (7), 737 - 741 10.1002/cyto.a.24169
• König, S., Vogel, H.-J., Harms, H., Worrich, A. (2020):
  Physical, chemical and biological effects on soil bacterial dynamics in microscale models
  Front. Ecol. Evol. 8 , art. 53 10.3389/fevo.2020.00053
• Kopinke, F.-D., Harms, H. (2020):
  Letter: What are the active species in the photocatalytic disinfection of water?
  Chem 6 (4), 806 - 807 10.1016/j.chempr.2020.03.008
• Korth, B., Kretzschmar, J., Bartz, M., Kuchenbuch, A., Harnisch, F. (2020):
  Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms
  PLOS One 15 (6), e0234077 10.1371/journal.pone.0234077
• Korth, B., Kuchenbuch, A., Harnisch, F. (2020):
  Cover profile: Availability of hydrogen shapes the microbial abundance in biofilm anodes based on Geobacter enrichment
  ChemElectroChem 7 (18), 3683 - 3683 10.1002/celc.202001006
• Korth, B., Kuchenbuch, A., Harnisch, F. (2020):
  Availability of hydrogen shapes the microbial abundance in biofilm anodes based on Geobacter enrichment
  ChemElectroChem 7 (18), 3720 - 3724 10.1002/celc.202000731
• Krause, J.L., Schaepe, S.S., Fritz-Wallace, K., Engelmann, B., Rolle-Kampczyk, U., Kleinsteuber, S., Schattenberg, F., Liu, Z., Müller, S., Jehmlich, N., von Bergen, M., Herberth, G. (2020):
  Following the community development of SIHUMIx – a new intestinal in vitro model for bioreactor use
  Gut Microbes 11 (4), 1116 - 1129 10.1080/19490976.2019.1702431
• Krause, J.L., Schäpe, S.S., Schattenberg, F., Müller, S., Ackermann, G., Rolle-Kampczyk, U.E., Jehmlich, N., Pierzchalski, A., von Bergen, M., Herberth, G. (2020):
  The activation of mucosal-associated invariant T (MAIT) cells is affected by microbial diversity and riboflavin utilization in vitro
  Front. Microbiol. 11 , art. 755 10.3389/fmicb.2020.00755
• Lian, S., Nikolausz, M., Nijenhuis, I., Nunes da Rocha, U., Liu, B., Borim Corrêa, F., Saraiva, J.P., Richnow, H.H. (2020):
  Biotransformation of hexachlorocyclohexanes contaminated biomass for energetic utilization demonstrated in continuous anaerobic digestion system
  J. Hazard. Mater. 384 , art. 121448 10.1016/j.jhazmat.2019.121448
• Liu, B., Kleinsteuber, S., Centler, F., Harms, H., Sträuber, H. (2020):
  Competition between butyrate fermenters and chain-elongating bacteria limits the efficiency of medium-chain carboxylate production
  Front. Microbiol. 11 , art. 336 10.3389/fmicb.2020.00336
• Liu, B., Popp, D., Müller, N., Sträuber, H., Harms, H., Kleinsteuber, S. (2020):
  Three novel Clostridia isolates produce n-caproate and iso-butyrate from lactate: comparative genomics of chain-elongating bacteria
  Microorganisms 8 (12), art. 1970 10.3390/microorganisms8121970
• Liu, B., Popp, D., Sträuber, H., Harms, H., Kleinsteuber, S. (2020):
  Draft genome sequences of three Clostridia isolates involved in lactate-based chain elongation
  Microbiol. Resour. Ann. 9 (32), e00679-20 10.1128/MRA.00679-20
• Liu, Z., Müller, S. (2020):
  Bacterial community diversity dynamics highlight degrees of nestedness and turnover patterns
  Cytom. Part A 97 (7), 742 - 748 10.1002/cyto.a.23965
• Logroño, W., Popp, D., Kleinsteuber, S., Sträuber, H., Harms, H., Nikolausz, M. (2020):
  Microbial resource management for ex situ biomethanation of hydrogen at alkaline pH
  Microorganisms 8 , art. 614 10.3390/microorganisms8040614
• López-Mondéjar, R., Tláskal, V., Větrovský, T., Štursová, M., Toscan, R., Nunes da Rocha, U., Baldrian, P. (2020):
  Metagenomics and stable isotope probing reveal the complementary contribution of fungal and bacterial communities in the recycling of dead biomass in forest soil
  Soil Biol. Biochem. 148 , art. 107875 10.1016/j.soilbio.2020.107875
• Marques, M., Borges, N., Silva, S.G., Nunes da Rocha, U., Lago-Lestón, A., Keller-Costa, T., Costa, R. (2020):
  Metagenome-assembled genome sequences of three uncultured Planktomarina sp. strains from the Northeast Atlantic Ocean
  Microbiol. Resour. Ann. 9 (12), e00127-20 10.1128/MRA.00127-20
• Mayr, J.C., Rosa, L.F.M., Klinger, N., Grosch, J.-H., Harnisch, F., Spiess, A.C. (2020):
  Response‐surface‐optimized and scaled‐up microbial electrosynthesis of chiral alcohols
  ChemSusChem 13 (7), 1808 - 1816 10.1002/cssc.201903428
• Mogodiniyai Kasmaei, K., Schlosser, D., Sträuber, H., Kleinsteuber, S. (2020):
  Does glucose affect the de-esterification of methyl ferulate by Lactobacillus buchneri?
  MicrobiologyOpen 9 (2), e971 10.1002/mbo3.971
• Müller, S., Chang, H.-D. (2020):
  Microorganisms and their activities within microbial communities
  Cytom. Part A 97 (7), 681 - 682 10.1002/cyto.a.24175
• Ozbayram, E.G., Kleinsteuber, S., Nikolausz, M. (2020):
  Biotechnological utilization of animal gut microbiota for valorization of lignocellulosic biomass
  Appl. Microbiol. Biotechnol. 104 (2), 489 - 508 10.1007/s00253-019-10239-w
• Popp, D., Centler, F. (2020):
  μBialSim: Constraint-based dynamic simulation of complex microbiomes
  Front. Bioeng. Biotechnol. 8 , art. 574 10.3389/fbioe.2020.00574
• Risse-Buhl, U., Anlanger, C., Chatzinotas, A., Noss, C., Lorke, A., Weitere, M. (2020):
  Near streambed flow shapes microbial guilds within and across trophic levels in fluvial biofilms
  Limnol. Oceanogr. 65 (10), 2261 - 2277 10.1002/lno.11451
• Rohwerder, T. (2020):
  New structural insights into bacterial sulfoacetaldehyde and taurine metabolism
  Biochem. J. 477 (8), 1367 - 1371 10.1042/BCJ20200079
• Rohwerder, T., Rohde, M.-T., Jehmlich, N., Purswani, J. (2020):
  Actinobacterial degradation of 2-hydroxyisobutyric acid proceeds via acetone and formyl-CoA by employing a thiamine-dependent lyase reaction
  Front. Microbiol. 11 , art. 691 10.3389/fmicb.2020.00691
• Sadik, A., Somarribas Patterson, L.F., Öztürk, S., Mohapatra, S.R., Panitz, V., Secker, P.F., Pfänder, P., Loth, S., Salem, H., Prentzell, M.T., Berdel, B., Iskar, M., Faessler, E., Reuter, F., Kirst, I., Kalter, V., Foerster, K.I., Jäger, E., Ramallo Guevara, C., Sobeh, M., Hielscher, T., Poschet, G., Reinhardt, A., Hassel, J.C., Zapatka, M., Hahn, U., von Deimling, A., Hopf, C., Schlichting, R., Escher, B.I., Burhenne, J., Haefeli, W.E., Ishaque, N., Böhme, A., Schäuble, S., Thedieck, K., Trump, S., Seiffert, M., Opitz, C.A. (2020):
  IL4I1 is a metabolic immune checkpoint that activates the AHR and promotes tumor progression
  Cell 182 (5), 1252 - 1270.e34 10.1016/j.cell.2020.07.038
• Schmidt, J., Buenger, L., Krohn, S., Kallies, R., Zeller, K., Schneider, H., Ziebolz, D., Berg, T., Haak, R. (2020):
  Effect of a bioactive cement on the microbial community in carious dentin after selective caries removal – An in-vivo study
  J. Dent. 92 , art. 103264 10.1016/j.jdent.2019.103264
• Schulte-Schrepping, J., Reusch, N., Paclik, D., Baßler, K., Schlickeiser, S., Zhang, B., Krämer, B., Krammer, T., Brumhard, S., Bonaguro, L., De Domenico, E., Wendisch, D., Grasshoff, M., Kapellos, T.S., Beckstette, M., Pecht, T., Saglam, A., Dietrich, O., Mei, H.E., Schulz, A.R., Conrad, C., Kunkel, D., Vafadarnejad, E., Xu, C.-J., Horne, A., Herbert, M., Drews, A., Thibeault, C., Pfeiffer, M., Hippenstiel, S., Hocke, A., Müller-Redetzky, H., Heim, K.-M., Machleidt, F., Uhrig, A., Bosquillon de Jarcy, L., Jürgens, L., Stegemann, M., Glösenkamp, C.R., Volk, H.-D., Goffinet, C., Landthaler, M., Wyler, E., Georg, P., Schneider, M., Dang-Heine, C., Neuwinger, N., Kappert, K., Tauber, R., Corman, V., Raabe, J., Kaiser, K.M., Vinh, M.T., Rieke, G., Meisel, C., Ulas, T., Becker, M., Geffers, R., Witzenrath, M., Drosten, C., Suttorp, N., von Kalle, C., Kurth, F., Händler, K., Schultze, J.L., Aschenbrenner, A.C., Li, Y., Nattermann, J., Sawitzki, B., Saliba, A.-E., Sander, L.E., Angelov, A., Bals, R., Bartholomäus, A., Becker, A., Bezdan, D., Bonifacio, E., Bork, P., Clavel, T., Colome-Tatche, M., Diefenbach, A., Dilthey, A., Fischer, N., Förstner, K., Frick, J.-S., Gagneur, J., Goesmann, A., Hain, T., Hummel, M., Janssen, S., Kalinowski, J., Kallies, R., Kehr, B., Keller, A., Kim-Hellmuth, S., Klein, C., Kohlbacher, O., Korbel, J.O., Kurth, I., Ludwig, K., Makarewicz, O., Marz, M., McHardy, A., Mertes, C., Nöthen, M., Nürnberg, P., Ohler, U., Ossowski, S., Overmann, J., Peter, S., Pfeffer, K., Poetsch, A.R., Pühler, A., Rajewsky, N., Ralser, M., Rieß, O., Ripke, S., Nunes da Rocha, U., Rosenstiel, P., Schiffer, P., Schulte, E.-C., Sczyrba, A., Stegle, O., Stoye, J., Theis, F., Vehreschild, J., Vogel, J., von Kleist, M., Walker, A., Walter, J., Wieczorek, D., Ziebuhr, J. (2020):
  Severe COVID-19 is marked by a dysregulated myeloid cell compartment
  Cell 182 (6), 1419 - 1440 10.1016/j.cell.2020.08.001
• Shan, Y., Liu, L., Liu, Y., Harms, H., Wick, L.Y. (2020):
  Effects of electrokinetic phenomena on bacterial deposition monitored by quartz crystal microbalance with dissipation monitoring
  Environ. Sci. Technol. 54 (21), 14036 - 14045 10.1021/acs.est.0c04347
• Shan, Y., Qin, J., Harms, H., Wick, L.Y. (2020):
  Electrokinetic effects on the interaction of phenanthrene with geo-sorbents
  Chemosphere 242 , art. 125161 10.1016/j.chemosphere.2019.125161
• Tomaszewski, E.J., Olson, L., Obst, M., Byrne, J.M., Kappler, A., Muehe, E.M. (2020):
  Complexation by cysteine and iron mineral adsorption limit cadmium mobility during metabolic activity of Geobacter sulfurreducens
  Environ. Sci.-Process Impacts 22 (9), 1877 - 1887 10.1039/d0em00244e
• Vogel, K., Greinert, T., Harms, H., Sadowski, G., Held, C., Maskow, T. (2020):
  Influence of cytosolic conditions on the reaction equilibrium and the reaction enthalpy of the enolase reaction accessed by calorimetry and van ‘t HOFF
  Biochim. Biophys. Acta-Gen. Subj. 1864 (10), art. 129675 10.1016/j.bbagen.2020.129675
• Vogel, K., Greinert, T., Held, C., Harms, H., Maskow, T. (2020):
  Application of irreversible thermodynamics to determine the influence of cell mimicking conditions on the kinetics of equilibrium reactions of the glycolysis
  Biophys. J. 118 (3, Suppl. 1), 346a - 347a 10.1016/j.bpj.2019.11.2000
• Vogel, K., Greinert, T., Reichard, M., Held, C., Harms, H., Maskow, T. (2020):
  Thermodynamics and kinetics of glycolytic reactions. Part II: Influence of cytosolic conditions on thermodynamic state variables and kinetic parameters
  Int. J. Mol. Sci. 21 (21), art. 7921 10.3390/ijms21217921
• Vogel, K., Greinert, T., Reichard, M., Held, C., Harms, H., Maskow, T. (2020):
  Thermodynamics and kinetics of glycolytic reactions. Part I: Kinetic modeling based on irreversible thermodynamics and validation by calorimetry
  Int. J. Mol. Sci. 21 (21), art. 8341 10.3390/ijms21218341
• Weise, H., Auge, H., Baessler, C., Bärlund, I., Bennett, E.M., Berger, U., Bohn, F., Bonn, A., Borchardt, D., Brand, F., Chatzinotas, A., Corstanje, R., De Laender, F., Dietrich, P., Dunker, S., Durka, W., Fazey, I., Groeneveld, J., Guilbaud, C.S.E., Harms, H., Harpole, S., Harris, J., Jax, K., Jeltsch, F., Johst, K., Joshi, J., Klotz, S., Kühn, I., Kuhlicke, C., Müller, B., Radchuk, V., Reuter, H., Rinke, K., Schmitt-Jansen, M., Seppelt, R., Singer, A., Standish, R.J., Thulke, H.-H., Tietjen, B., Weitere, M., Wirth, C., Wolf, C., Grimm, V. (2020):
  Resilience trinity: safeguarding ecosystem functioning and services across three different time horizons and decision contexts
  Oikos 129 (4), 445 - 456 10.1111/oik.07213

2019 (57)

• Al-Fathi, H., Koch, M., Lorenz, W.G., Lechner, U. (2019):
  Anaerobic degradation of 2,4,5-trichlorophenoxyacetic acid by enrichment cultures from freshwater sediments
  Environ. Sci. Pollut. Res. 26 (33), 34459 - 34467 10.1007/s11356-019-06584-y
• Badia-Fabregat, M., Rago, L., Baeza, J.A., Guisasola, A. (2019):
  Hydrogen production from crude glycerol in an alkaline microbial electrolysis cell
  Int. J. Hydrog. Energy 44 (32), 17204 - 17213 10.1016/j.ijhydene.2019.03.193
• Baleeiro, F.C.F., Kleinsteuber, S., Neumann, A., Sträuber, H. (2019):
  Syngas-aided anaerobic fermentation for medium-chain carboxylate and alcohol production: the case for microbial communities
  Appl. Microbiol. Biotechnol. 103 (21-22), 8689 - 8709 10.1007/s00253-019-10086-9
• Bonk, F., Popp, D., Weinrich, S., Sträuber, H., Becker, D., Kleinsteuber, S., Harms, H., Centler, F. (2019):
  Determination of microbial maintenance in acetogenesis and methanogenesis by experimental and modeling techniques
  Front. Microbiol. 10 , art. 166 10.3389/fmicb.2019.00166
• Borsetto, C., Amos, G.C.A., Nunes da Rocha, U., Mitchell, A.L., Finn, R.D., Laidi, R.F., Vallin, C., Pearce, D.A., Newsham, K.K., Wellington, E.M.H. (2019):
  Microbial community drivers of PK/NRP gene diversity in selected global soils
  Microbiome 7 , art. 78 10.1186/s40168-019-0692-8
• Calabrese, F., Voloshynovska, I., Musat, F., Thullner, M., Schlömann, M., Richnow, H.H., Lambrecht, J., Müller, S., Wick, L.Y., Musat, N., Stryhanyuk, H. (2019):
  Quantitation and comparison of phenotypic heterogeneity among single cells of monoclonal microbial populations
  Front. Microbiol. 10 , art. 2814 10.3389/fmicb.2019.02814
• Chen, S.-C., Musat, N., Lechtenfeld, O.J., Paschke, H., Schmidt, M., Said, N., Popp, D., Calabrese, F., Stryhanyuk, H., Jaekel, U., Zhu, Y.-G., Joye, S.B., Richnow, H.-H., Widdel, F., Musat, F. (2019):
  Anaerobic oxidation of ethane by archaea from a marine hydrocarbon seep
  Nature 568 (7750), 108 - 111 10.1038/s41586-019-1063-0
• Chowdhury, R., Ghosh, S., Manna, D., Das, S., Dutta, S., Kleinsteuber, S., Sträuber, H., Hassan, M.K., Kuittinen, S., Pappinen, A. (2019):
  Hybridization of sugar-carboxylate-syngas platforms for the production of bio-alcohols from lignocellulosic biomass (LCB) – A state-of-the-art review and recommendations
  Energy Conv. Manag. 200 , art. 112111 10.1016/j.enconman.2019.112111
• Cohen, Y., Pasternak, Z., Johnke, J., Abed‐Rabbo, A., Kushmaro, A., Chatzinotas, A., Jurkevitch, E. (2019):
  Bacteria and micro‐eukaryotes are differentially segregated in sympatric wastewater microhabitats
  Environ. Microbiol. 21 (5), 1757 - 1770 10.1111/1462-2920.14548
• Cossarizza, A., Chang, H.-D., Radbruch, A., Acs, A., Adam, D., Adam-Klages, S., Müller, S., Agace, W.W., et al. (2019):
  Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition)
  Eur. J. Immunol. 49 (10), 1457 - 1973 10.1002/eji.201970107
• Czechowska, K., Lannigan, J., Wang, L., Arcidiacono, J., Ashhurst, T.M., Barnard, R.M., Bauer, S., Bispo, C., Bonilla, D.L., Brinkman, R.R., Cabanski, M., Chang, H.-D., Chakrabarti, L., Chojnowski, G., Cotleur, B., Degheidy, H., Dela Cruz, G.V., Eck, S., Elliott, J., Errington, R., Filby, A., Gagnon, D., Gardner, R., Green, C., Gregory, M., Groves, C.J., Hall, C., Hammes, F., Hedrick, M., Hoffman, R., Icha, J., Ivaska, J., Jenner, D.C., Jones, D., Kerckhof, F.M., Kukat, C., Lanham, D., Leavesley, S., Lee, M., Lin‐Gibson, S., Litwin, V., Liu, Y., Molloy, J., Moore, J.S., Müller, S., Nedbal, J., Niesner, R., Nitta, N., Ohlsson‐Wilhelm, B., Paul, N.E., Perfetto, S., Portat, Z., Props, R., Radtke, S., Rayanki, R., Rieger, A., Rogers, S., Rubbens, P., Salomon, R., Schiemann, M., Sharpe, J., Sonder, S.U., Stewart, J.J., Sun, Y., Ulrich, H., Van Isterdael, G., Vitaliti, A., van Vreden, C., Weber, M., Zimmermann, J., Vacca, G., Wallace, P., Tárnok, A. (2019):
  Cyt‐Geist: Current and Future Challenges in Cytometry: Reports of the CYTO 2018 Conference Workshops
  Cytom. Part A 95 (6), 598 - 644 10.1002/cyto.a.23777
• Dias, O., Saraiva, J., Faria, C., Ramirez, M., Pinto, F., Rocha, I. (2019):
  iDS372, a phenotypically reconciled model for the metabolism of Streptococcus pneumoniae strain R6
  Front. Microbiol. 10 , art. 1283 10.3389/fmicb.2019.01283
• Donnenberg, V.S., Müller, S., Houston, J.P., Holden, E. (2019):
  Cytometry score: 23 to 4
  Cytom. Part A 95 (3), 259 - 260 10.1002/cyto.a.23713
• Engel, C., Schattenberg, F., Dohnt, K., Schröder, U., Müller, S., Krull, R. (2019):
  Long-term behavior of defined mixed cultures of Geobacter sulfurreducens and Shewanella oneidensis in bioelectrochemical systems
  Front. Bioeng. Biotechnol. 7 , art. 60 10.3389/fbioe.2019.00060
• Fricke, C., Harms, H., Maskow, T. (2019):
  Rapid calorimetric detection of bacterial contamination: Influence of the cultivation technique
  Front. Microbiol. 10 , art. 2530 10.3389/fmicb.2019.02530
• Ghanem, N., Stanley, C.E., Harms, H., Chatzinotas, A., Wick, L.Y. (2019):
  Mycelial effects on phage retention during transport in a microfluidic platform
  Environ. Sci. Technol. 53 (20), 11755 - 11763 10.1021/acs.est.9b03502
• Guo, Y., Cichocki, N., Schattenberg, F., Geffers, R., Harms, H., Müller, S. (2019):
  AgNPs change microbial community structures of wastewater
  Front. Microbiol. 9 , art. 3211 10.3389/fmicb.2018.03211
• Harnisch, F., Schröder, U. (2019):
  Tapping renewables: a new dawn for organic electrosynthesis in aqueous reaction media
  ChemElectroChem 6 (16), 4126 - 4133 10.1002/celc.201900456
• Hegner, R., Neubert, K., Rosa, L.F.M., Harnisch, F. (2019):
  Engineering electrochemical CO₂ reduction to formate under bioprocess‐compatible conditions to bioreactor scale
  ChemElectroChem 6 (14), 3731 - 3735 10.1002/celc.201900526
• Hofmann, P., Chatzinotas, A., Harpole, W.S., Dunker, S. (2019):
  Temperature and stoichiometric dependence of phytoplankton traits
  Ecology 100 (12), e02875 10.1002/ecy.2875
• Hübner, T., Herrmann, A., Kretzschmar, J., Harnisch, F. (2019):
  Suitability of fecal sludge from composting toilets as feedstock for carbonization
  Journal of Water, Sanitation and Hygiene for Development 9 (4), 616 - 626 10.2166/washdev.2019.047
• Janke, L., Weinrich, S., Leite, A.F., Sträuber, H., Nikolausz, M., Nelles, M. (2019):
  Pre-treatment of filter cake for anaerobic digestion in sugarcane biorefineries: Assessment of batch versus semi-continuous experiments
  Renew. Energy 143 , 1416 - 1426 10.1016/j.renene.2019.05.029
• Kallies, R., Hölzer, M., Brizola Toscan, R., Nunes da Rocha, U., Anders, J., Marz, M., Chatzinotas, A. (2019):
  Evaluation of sequencing library preparation protocols for viral metagenomic analysis from pristine aquifer groundwaters
  Viruses 11 (6), art. 484 10.3390/v11060484
• Kallies, R., Kiesel, B., Schmidt, M., Ghanem, N., Zopfi, J., Hackermüller, J., Harms, H., Wick, L.Y., Chatzinotas, A. (2019):
  Complete genome sequence of Pseudoalteromonas virus vB_PspP-H6/1 that infects Pseudoalteromonas sp. strain H6
  Mar. Genom. 47 , art. 100667 10.1016/j.margen.2019.03.002
• Karimi, E., Keller-Costa, T., Slaby, B.M., Cox, C.J., Nunes da Rocha, U., Hentschel, U., Costa, R. (2019):
  Genomic blueprints of sponge-prokaryote symbiosis are shared by low abundant and cultivatable Alphaproteobacteria
  Sci. Rep. 9 , art. 1999 10.1038/s41598-019-38737-x
• Kleinsteuber, S., Rohwerder, T., Lohse, U., Seiwert, B., Reemtsma, T. (2019):
  Sated by a zero-calorie sweetener: Wastewater bacteria can feed on acesulfame
  Front. Microbiol. 10 , art. 2606 10.3389/fmicb.2019.02606
• Klünemann, T., Preuß, A., Adamczack, J., Rosa, L.F.M., Harnisch, F., Layer, G., Blankenfeldt, W. (2019):
  Crystal structure of dihydro-heme d₁ dehydrogenase NirN from Pseudomonas aeruginosa reveals amino acid residues essential for catalysis
  J. Mol. Biol. 431 (17), 3246 - 3260 10.1016/j.jmb.2019.05.046
• Koch, C., Huber, K.J., Bunk, B., Overmann, J., Harnisch, F. (2019):
  Trophic networks improve the performance of microbial anodes treating wastewater
  npj Biofilms Microbiomes 5 , art. 27 10.1038/s41522-019-0100-y
• König, S., Köhnke, M.C., Firle, A.-L., Banitz, T., Centler, F., Frank, K., Thullner, M. (2019):
  Disturbance size can be compensated for by spatial fragmentation in soil microbial ecosystems
  Front. Ecol. Evol. 7 , art. 290 10.3389/fevo.2019.00290
• Koók, L., Bakonyi, P., Harnisch, F., Kretzschmar, J., Chae, K.-J., Zhen, G., Kumar, G., Rózsenberszki, T., Tóth, G., Nemestóthy, N., Bélafi-Bakó, K. (2019):
  Biofouling of membranes in microbial electrochemical technologies: Causes, characterization methods and mitigation strategies
  Bioresour. Technol. 279 , 327 - 338 10.1016/j.biortech.2019.02.001
• Korth, B., Harnisch, F. (2019):
  Corrigendum: Spotlight on the energy harvest of electroactive microorganisms: The impact of the applied anode potential
  Front. Microbiol. 10 , art. 2744 10.3389/fmicb.2019.02744
• Korth, B., Harnisch, F. (2019):
  Spotlight on the energy harvest of electroactive microorganisms: The impact of the applied anode potential
  Front. Microbiol. 10 , art. 1352 10.3389/fmicb.2019.01352
• Lambrecht, J., Cichocki, N., Schattenberg, F., Kleinsteuber, S., Harms, H., Müller, S., Sträuber, H. (2019):
  Key sub‑community dynamics of medium‑chain carboxylate production
  Microb. Cell. Fact. 18 , art. 92 10.1186/s12934-019-1143-8
• Lian, S., Wu, L., Nikolausz, M., Lechtenfeld, O.J., Richnow, H.H. (2019):
  ²H and ¹³C isotope fractionation analysis of organophosphorus compounds for characterizing transformation reactions in biogas slurry: Potential for anaerobic treatment of contaminated biomass
  Water Res. 163 , art. 114882 10.1016/j.watres.2019.114882
• Liu, Z., Cichocki, N., Hübschmann, T., Süring, C., Ofiţeru, I.D., Sloan, W.T., Grimm, V., Müller, S. (2019):
  Neutral mechanisms and niche differentiation in steady-state insular microbial communities revealed by single cell analysis
  Environ. Microbiol. 21 (1), 164 - 181 10.1111/1462-2920.14437
• Ludwig, J., Höner zu Siederdissen, C., Liu, Z., Stadler, P.F., Müller, S. (2019):
  flowEMMi: an automated model-based clustering tool for microbial cytometric data
  BMC Bioinformatics 20 , art. 643 10.1186/s12859-019-3152-3
• Lv, Z., Leite, A.F., Harms, H., Glaser, K., Liebetrau, J., Kleinsteuber, S., Nikolausz, M. (2019):
  Microbial community shifts in biogas reactors upon complete or partial ammonia inhibition
  Appl. Microbiol. Biotechnol. 103 (1), 519 - 533 10.1007/s00253-018-9444-0
• Maskow, T., Rothe, A., Jakob, T., Paufler, S., Wilhelm, C. (2019):
  Photocalorespirometry (Photo-CR): A novel method for access to photosynthetic energy conversion efficiency
  
  Sci. Rep. 9 , art. 9298 10.1038/s41598-019-45296-8
• Matz, B., Kupfer, B., Kallies, R., Külshammer, M., Flötenmeyer, M., Kreil, T.R., Eis-Hübinger, A.M. (2019):
  Secondary structure of DNA released from purified capsids of human parvovirus B19 under moderate denaturing conditions
  J. Gen. Virol. 100 (5), 812 - 827 10.1099/jgv.0.001253
• Mayr, J.C., Grosch, J.-H., Hartmann, L., Rosa, L.F.M., Spiess, A.C., Harnisch, F. (2019):
  Resting Escherichia coli as chassis for microbial electrosynthesis: production of chiral alcohols
  ChemSusChem 12 (8), 1631 - 1634 10.1002/cssc.201900413
• Mayr, J.C., Grosch, J.-H., Hartmann, L., Rosa, L.F.M., Spiess, A.C., Harnisch, F. (2019):
  Front cover: Resting Escherichia coli as chassis for microbial electrosynthesis: production of chiral alcohols (ChemSusChem 8/2019)
  ChemSusChem 12 (8), 1478, 1482 10.1002/cssc.201900931
• Meng, X., Liu, B., Zhang, H., Wu, J., Yuan, X., Cui, Z. (2019):
  Co-composting of the biogas residues and spent mushroom substrate: Physicochemical properties and maturity assessment
  Bioresour. Technol. 276 , 281 - 287 10.1016/j.biortech.2018.12.097
• Richert, I., Yager, P.L., Dinasquet, J., Logares, R., Riemann, L., Wendeberg, A., Bertilsson, S., Scofield, D.G. (2019):
  Summer comes to the Southern Ocean: how phytoplankton shape bacterioplankton communities far into the deep dark sea
  Ecosphere 10 (3), e02641 10.1002/ecs2.2641
• Rosa, L.F.M., Hunger, S., Zschernitz, T., Strehlitz, B., Harnisch, F. (2019):
  Integrating electrochemistry into bioreactors: effect of the upgrade kit on mass transfer, mixing time and sterilizability
  Front. Energy Res. 7 , art. 98 10.3389/fenrg.2019.00098
• Rosado, P.M., Leite, D.C.A., Duarte, G.A.S., Chaloub, R.M., Jospin, G., Nunes da Rocha, U., Saraiva, J.P., Dini-Andreote, F., Eisen, J.A., Bourne, D.G., Peixoto, R.S. (2019):
  Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation
  ISME J. 13 (4), 921 - 936 10.1038/s41396-018-0323-6
• Schäpe, S.S., Krause, J.L., Engelmann, B., Fritz-Wallace, K., Schattenberg, F., Liu, Z., Müller, S., Jehmlich, N., Rolle-Kampczyk, U., Herberth, G., von Bergen, M. (2019):
  The simplified human intestinal microbiota (SIHUMIx) shows high structural and functional resistance against changing transit times in in vitro bioreactors
  Microorganisms 7 (12), art. 641 10.3390/microorganisms7120641
• Schmidt, R., Ulanova, D., Wick, L.Y., Bode, H.B., Garbeva, P. (2019):
  Microbe-driven chemical ecology: past, present and future
  ISME J. 13 (11), 2656 - 2663 10.1038/s41396-019-0469-x
• Schultz, J., Kallies, R., Nunes da Rocha, U., Rosado, A.S. (2019):
  Draft genome sequence of Brevibacillus sp. Strain LEMMJ03, isolated from an Antarctic volcano
  Microbiol. Resour. Ann. 8 (40), e00921-19 10.1128/mra.00921-19
• Schwab, L., Rago, L., Koch, C., Harnisch, F. (2019):
  Identification of Clostridium cochlearium as an electroactive microorganism from the mouse gut microbiome
  Bioelectrochemistry 130 , art. 107334 10.1016/j.bioelechem.2019.107334
• Sendek, A., Karakoç, C., Wagg, C., Domínguez-Begines, J., Martucci do Couto, G., van der Heijden, M.G.A., Naz, A.A., Lochner, A., Chatzinotas, A., Klotz, S., Gómez-Aparicio, L., Eisenhauer, N. (2019):
  Drought modulates interactions between arbuscular mycorrhizal fungal diversity and barley genotype diversity
  Sci. Rep. 9 , art. 9650 10.1038/s41598-019-45702-1
• Vásquez Piñeros, M.A., Martínez-Lavanchy, P.M., Schmidt, K., Mardones, M., Heipieper, H.J. (2019):
  Changes in bacterial diversity and catabolic gene abundance during the removal of dimethylphenol isomers in laboratory scale constructed wetlands
  Appl. Microbiol. Biotechnol. 103 (1), 505 - 517 10.1007/s00253-018-9479-2
• Weinrich, S., Koch, S., Bonk, F., Popp, D., Benndorf, D., Klamt, S., Centler, F. (2019):
  Augmenting biogas process modeling by resolving intracellular metabolic activity
  Front. Microbiol. 10 , art. 1095 10.3389/fmicb.2019.01095
• Wieczorek, A.S., Schmidt, O., Chatzinotas, A., von Bergen, M., Gorissen, A., Kolb, S. (2019):
  Ecological functions of agricultural soil bacteria and microeukaryotes in chitin degradation: A case study
  Front. Microbiol. 10 , art. 1293 10.3389/fmicb.2019.01293
• Witkowski, P.T., Drexler, J.F., Kallies, R., Ličková, M., Bokorová, S., Maganga, G.D., Szemes, T., Leroy, E.M., Krüger, D.H., Drosten, C., Klempa, B. (2019):
  Corrigendum to “Phylogenetic analysis of a newfound bat-borne hantavirus supports a Laurasiatherian host association for ancestral mammalian hantaviruses” [Infect. Genet. Evol. 41 (2016) 113–119]
  Infect. Genet. Evol. 67 , 245 10.1016/j.meegid.2018.02.033
• Worrich, A., Musat, N., Harms, H. (2019):
  Associational effects in the microbial neighborhood
  ISME J. 13 (9), 2143 - 2149 10.1038/s41396-019-0444-6
• Zahn, M., Kurteva-Yaneva, N., Schuster, J., Krug, U., Georgi, T., Müller, R.H., Rohwerder, T., Sträter, N. (2019):
  Structures of 2-Hydroxyisobutyric Acid-CoA ligase reveal determinants of substrate specificity and describe a multi-conformational catalytic cycle
  J. Mol. Biol. 431 (15), 2747 - 2761 10.1016/j.jmb.2019.05.027
• Ziganshin, A.M., Wintsche, B., Seifert, J., Carstensen, M., Born, J., Kleinsteuber, S. (2019):
  Spatial separation of metabolic stages in a tube anaerobic baffled reactor: reactor performance and microbial community dynamics
  Appl. Microbiol. Biotechnol. 103 (9), 3915 - 3929 10.1007/s00253-019-09767-2

2018 (64)

• Atashgahi, S., Hornung, B., van der Waals, M.J., Nunes da Rocha, U., Hugenholtz, F., Nijsse, B., Molenaar, D., van Spanning, R., Stams, A.J.M., Gerritse, J., Smidt, H. (2018):
  A benzene-degrading nitrate-reducing microbial consortium displays aerobic and anaerobic benzene degradation pathways
  Sci. Rep. 8 , art. 4490 10.1038/s41598-018-22617-x
• Aulenta, F., Puig, S., Harnisch, F. (2018):
  Microbial electrochemical technologies: maturing but not mature. Editorial
  Microb. Biotechnol. 11 (1), 18 - 19 10.1111/1751-7915.13045
• Becher, E., Heese, A., Claußen, L., Eisen, S., Jehmlich, N., Rohwerder, T., Purswani, J. (2018):
  Active site alanine preceding catalytic cysteine determines unique substrate specificity in bacterial CoA‐acylating prenal dehydrogenase
  FEBS Lett. 592 (7), 1150 - 1160 10.1002/1873-3468.13019
• Bonk, F., Popp, D., Harms, H., Centler, F. (2018):
  PCR-based quantification of taxa-specific abundances in microbial communities: Quantifying and avoiding common pitfalls
  J. Microbiol. Methods 153 , 139 - 147 10.1016/j.mimet.2018.09.015
• Bonk, F., Popp, D., Weinrich, S., Sträuber, H., Kleinsteuber, S., Harms, H., Centler, F. (2018):
  Ammonia inhibition of anaerobic volatile fatty acid degrading microbial communities
  Front. Microbiol. 9 , art. 2921 10.3389/fmicb.2018.02921
• Bonk, F., Popp, D., Weinrich, S., Sträuber, H., Kleinsteuber, S., Harms, H., Centler, F. (2018):
  Intermittent fasting for microbes: how discontinuous feeding increases functional stability in anaerobic digestion
  Biotechnol. Biofuels 11 , art. 274 10.1186/s13068-018-1279-5
• Broekgaarden, C., Pelgrom, K.T.B., Bucher, J., van Dam, N.M., Grosser, K., Pieterse, C.M.J., van Kaauwen, M., Steenhuis, G., Voorrips, R.E., de Vos, M., Vosman, B., Worrich, A., van Wees, S.C.M. (2018):
  Combining QTL mapping with transcriptome and metabolome profiling reveals a possible role for ABA signaling in resistance against the cabbage whitefly in cabbage
  PLOS One 13 (11), e0206103 10.1371/journal.pone.0206103
• Concha, E., Heipieper, H.J., Wick, L.Y., Ciudad, G.A., Navia, R. (2018):
  Effects of limonene, n-decane and n-decanol on growth and membrane fatty acid composition of the microalga Botryococcus braunii
  AMB Express 8 (1), art. 189 10.1186/s13568-018-0718-9
• Deveau, A., Bonito, G., Uehling, J., Paoletti, M., Becker, M., Bindschedler, S., Hacquard, S., Hervé, V., Labbé, J., Lastovetsky, O.A., Mieszkin, S., Millet, L.J., Vajna, B., Junier, P., Bonfante, P., Krom, B.P., Olsson, S., van Elsas, J.D., Wick, L.Y. (2018):
  Bacterial–fungal interactions: ecology, mechanisms and challenges
  FEMS Microbiol. Rev. 42 (3), 335 - 352 10.1093/femsre/fuy008
• Fiedler, D., Maskow, T. (2018):
  A note of thanks from the guest editors to Professor Wolfgang Babel – An inspiring researcher and highly esteemed teacher
  Eng. Life Sci. 18 (7), 412 - 413 10.1002/elsc.201800092
• Ghanem, N., Trost, M., Sanchez Fontanet, L., Harms, H., Chatzinotas, A., Wick, L.Y. (2018):
  Changes of the specific infectivity of tracer phages during transport in porous media
  Environ. Sci. Technol. 52 (6), 3486 - 3492 10.1021/acs.est.7b06271
• Grobbler, C., Virdis, B., Nouwens, A., Harnisch, F., Rabaey, K., Bond, P.L. (2018):
  Effect of the anode potential on the physiology and proteome of Shewanella oneidensis MR-1
  Bioelectrochemistry 119 , 172 - 179 10.1016/j.bioelechem.2017.10.001
• Günther, S., Becker, D., Hübschmann, T., Reinert, S., Kleinsteuber, S., Müller, S., Wilhelm, C. (2018):
  Long-term biogas production from glycolate by diverse and highly dynamic communities
  Microorganisms 6 (4), art. 130 10.3390/microorganisms6040103
• Günther, S., Grunert, M., Müller, S. (2018):
  Overview of recent advances in phosphorus recovery for fertilizer production
  Eng. Life Sci. 18 (7), 434 - 439 10.1002/elsc.201700171
• Harnisch, F., Urban, C. (2018):
  Electrobiorefineries: Unlocking the synergy of electrochemical and microbial conversions
  Angew. Chem.-Int. Edit. 57 (32), 10016 - 10023 10.1002/anie.201711727
• Hegner, R., Rosa, L.F.M., Harnisch, F. (2018):
  Electrochemical CO₂ reduction to formate at indium electrodes with high efficiency and selectivity in pH neutral electrolytes
  Appl. Catal. B-Environ. 238 , 546 - 556 10.1016/j.apcatb.2018.07.030
• Hofmann, U., Fenu, A., Beffa, T., Beimfohr, C., Weemaes, M., Yu, L., Schrader, S., Moeder, M., Schlosser, D. (2018):
  Evaluation of the applicability of the aquatic ascomycete Phoma sp. UHH 5‐1‐03 for the removal of pharmaceutically active compounds from municipal wastewaters using membrane bioreactors
  Eng. Life Sci. 18 (7), 510 - 519 10.1002/elsc.201800070
• Jahangiri, E., Thomas, I., Schulze, A., Seiwert, B., Cabana, H., Schlosser, D. (2018):
  Characterisation of electron beam irradiation-immobilised laccase for application in wastewater treatment
  Sci. Total Environ. 624 , 309 - 322 10.1016/j.scitotenv.2017.12.127
• Janke, L., Weinrich, S., Leite, A.F., Sträuber, H., Radetski, C.M., Nikolausz, M., Nelles, M., Stinner, W. (2018):
  Year-round biogas production in sugarcane biorefineries: Process stability, optimization and performance of a two-stage reactor system
  Energy Conv. Manag. 168 , 188 - 199 10.1016/j.enconman.2018.04.101
• Jimenez-Sanchez, C., Wick, L.Y., Ortega-Calvo, J.-J. (2018):
  Impact of chemoeffectors on bacterial motility, transport, and contaminant degradation in sand-filled percolation columns
  Environ. Sci. Technol. 52 (18), 10673 - 10679 10.1021/acs.est.8b02370
• Kahl, S., Kleinsteuber, S., Nivala, J., van Afferden, M., Reemtsma, T. (2018):
  Emerging biodegradation of the previously persistent artificial sweetener acesulfame in biological wastewater treatment
  Environ. Sci. Technol. 55 (5), 2717 - 2725 10.1021/acs.est.7b05619
• Karakoç, C., Radchuk, V., Harms, H., Chatzinotas, A. (2018):
  Interactions between predation and disturbances shape prey communities
  Sci. Rep. 8 , art. 2968 10.1038/s41598-018-21219-x
• Karaoz, U., Couradeau, E., Nunes da Rocha, U., Lim, H.-C., Northen, T., Garcia-Pichel, F., Brodie, E.L. (2018):
  Large blooms of Bacillales (Firmicutes) underlie the response to wetting of cyanobacterial biocrusts at various stages of maturity
  mBio 9 (2), e01366-16 10.1128/mBio.01366-16
• Keller, A.H., Kleinsteuber, S., Vogt, C. (2018):
  Anaerobic benzene mineralization by nitrate-reducing and sulfate-reducing microbial consortia enriched
  from the same site: comparison of community composition and degradation characteristics
  Microb. Ecol. 75 (4), 941 - 953 10.1007/s00248-017-1100-1
• Keller, A.H., Kleinsteuber, S., Vogt, C. (2018):
  Correction to: Anaerobic benzene mineralization by nitrate-reducing and sulfate-reducing microbial consortia enriched from the same site: comparison of community composition and degradation characteristics (vol 75, pg 941, 2017)
  Microb. Ecol. 75 (4), 954 - 954 10.1007/s00248-017-1111-y
• Khan, A.M., Wick, L.Y., Thullner, M. (2018):
  Applying the Rayleigh approach for stable isotope-based analysis of VOC biodegradation in diffusion-dominated systems
  Environ. Sci. Technol. 52 (14), 7785 - 7795 10.1021/acs.est.8b01757
• Koch, C., Korth, B., Harnisch, F. (2018):
  Microbial ecology-based engineering of Microbial Electrochemical Technologies
  Microb. Biotechnol. 11 (1), 22 - 38 10.1111/1751-7915.12802
• Koch, C., Müller, S. (2018):
  Personalized microbiome dynamics – Cytometric fingerprints for routine diagnostics
  Mol. Asp. Med. 59 , 123 - 134 10.1016/j.mam.2017.06.005
• König, S., Worrich, A., Banitz, T., Centler, F., Harms, H., Kästner, M., Miltner, A., Wick, L.Y., Thullner, M., Frank, K. (2018):
  Spatiotemporal disturbance characteristics determine functional stability and collapse risk of simulated microbial ecosystems
  Sci. Rep. 8 , art. 9488 10.1038/s41598-018-27785-4
• König, S., Worrich, A., Banitz, T., Harms, H., Kästner, M., Miltner, A., Wick, L.Y., Frank, K., Thullner, M., Centler, F. (2018):
  Functional resistance to recurrent spatially heterogeneous disturbances is facilitated by increased activity of surviving bacteria in a virtual ecosystem
  Front. Microbiol. 9 , art. 734 10.3389/fmicb.2018.00734
• Kretzschmar, J., Böhme, P., Liebetrau, J., Mertig, M., Harnisch, F. (2018):
  Microbial electrochemical sensors for anaerobic digestion process control – performance of electroactive biofilms under real conditions
  Chem. Eng. Technol. 41 (4), 687 - 695 10.1002/ceat.201700539
• Krohn, S., Zeller, K., Böhm, S., Chatzinotas, A., Harms, H., Hartmann, I., Heidtmann, A., Herber, A., Kaiser, T., Treuheit, M., Hoffmeister, A., Berg, T., Engelmann, C. (2018):
  Molecular quantification and differentiation of Candida species in biological specimens of patients with liver cirrhosis
  PLOS One 13 (6), e0197319 10.1371/journal.pone.0197319
• Kuppardt, A., Fester, T., Härtig, C., Chatzinotas, A. (2018):
  Rhizosphere protists change metabolite profiles in Zea mays
  Front. Microbiol. 9 , art. 857 10.3389/fmicb.2018.00857
• Lambrecht, J., Schattenberg, F., Harms, H., Müller, S. (2018):
  Characterizing microbiome dynamics – flow cytometry based workflows from pure cultures to natural communities
  J. Vis. Exp. 2018 (137), e58033 10.3791/58033
• Lechner, U., Türkowsky, D., Dinh, T.T.H., Al-Fathi, H., Schwoch, S., Franke, S., Gerlach, M.-S., Koch, M., von Bergen, M., Jehmlich, N., Dang, T.C.H. (2018):
  Desulfitobacterium contributes to the microbial transformation of 2,4,5‐T by methanogenic enrichment cultures from a Vietnamese active landfill
  Microb. Biotechnol. 11 (6), 1137 - 1156 10.1111/1751-7915.13301
• Lian, S., Nikolausz, M., Nijenhuis, I., Leite, A.F., Richnow, H.H. (2018):
  Biotransformation and inhibition effects of hexachlorocyclohexanes during biogas production from contaminated biomass characterized by isotope fractionation concepts
  Bioresour. Technol. 250 , 683 - 690 10.1016/j.biortech.2017.11.076
• Liu, Z., Cichocki, N., Bonk, F., Günther, S., Schattenberg, F., Harms, H., Centler, F., Müller, S. (2018):
  Ecological stability properties of microbial communities assessed by flow cytometry
  mSphere 3 (1), e00564-17 10.1128/mSphere.00564-17
• Lv, Z., Jiang, J.H., Liebetrau, J., Richnow, H.H., Fischer, A., Ács, N., Nikolausz, M. (2018):
  Ammonium chloride vs urea-induced ammonia inhibition of the biogas process assessed by stable isotope analysis
  Chem. Eng. Technol. 41 (4), 671 - 679 10.1002/ceat.201700482
• Meng, X., Liu, B., Xi, C., Luo, X., Yuan, X., Wang, X., Zhu, W., Wang, H., Cui, Z. (2018):
  Effect of pig manure on the chemical composition and microbial diversity during co-composting with spent mushroom substrate and rice husks
  Bioresour. Technol. 251 , 22 - 30 10.1016/j.biortech.2017.09.077
• Newcomer, M.E., Hubbard, S.S., Fleckenstein, J.H., Maier, U., Schmidt, C., Thullner, M., Ulrich, C., Flipo, F., Rubin, Y. (2018):
  Influence of hydrological perturbations and riverbed sediment characteristics on hyporheic zone respiration of CO₂ and N₂
  J. Geophys. Res.-Biogeosci. 123 (3), 902 - 922 10.1002/2017JG004090
• Ozbayram, E.G., Akyol, C., Ince, B., Karakoç, C., Ince, O. (2018):
  Rumen bacteria at work: bioaugmentation strategies to enhance biogas production from cow manure
  J. Appl. Microbiol. 124 (2), 491 - 502 10.1111/jam.13668
• Ozbayram, E.G., Ince, O., Ince, B., Harms, H., Kleinsteuber, S. (2018):
  Comparison of rumen and manure microbiomes and implications for the inoculation of anaerobic digesters
  Microorganisms 6 (1), art. 15 10.3390/microorganisms6010015
• Ozbayram, E.G., Kleinsteuber, S., Nikolausz, M., Ince, B., Ince, O. (2018):
  Bioaugmentation of anaerobic digesters treating lignocellulosic feedstock by enriched microbial consortia
  Eng. Life Sci. 18 (7), 440 - 446 10.1002/elsc.201700199
• Ozbayram, E.G., Kleinsteuber, S., Nikolausz, M., Ince, B., Ince, O. (2018):
  Enrichment of lignocellulose-degrading microbial communities from natural and engineered methanogenic environments
  Appl. Microbiol. Biotechnol. 102 (2), 1035 - 1043 10.1007/s00253-017-8632-7
• Peters, K., Worrich, A., Weinhold, A., Alka, O., Balcke, G., Birkemeyer, C., Bruelheide, H., Calf, O.W., Dietz, S., Dührkop, K., Gaquerel, E., Heinig, U., Kücklich, M., Macel, M., Müller, C., Poeschl, Y., Pohnert, G., Ristok, C., Rodríguez, V.M., Ruttkies, C., Schumann, M., Schweiger, R., Shahaf, N., Steinbeck, C., Tortosa, M., Treutler, H., Ueberschaar, N., Velasco, P., Weiß, B.M., Widdig, A., Neumann, S., van Dam, N.M. (2018):
  Current challenges in plant eco-metabolomics
  Int. J. Mol. Sci. 19 (5), art. 1385 10.3390/ijms19051385
• Pons, S., Bindschedler, S., Sebag, D., Junier, P., Verrecchia, E., Cailleau, G. (2018):
  Biocontrolled soil nutrient distribution under the influence of an oxalogenic-oxalotrophic ecosystem
  Plant Soil 425 (1–2), 145 - 160 10.1007/s11104-018-3573-1
• Pozdnyakova, N., Schlosser, D., Dubrovskaya, E., Balandina, S., Sigida, E., Grinev, V., Turkovskaya, O. (2018):
  The degradative activity and adaptation potential of the litter-decomposing fungus Stropharia rugosoannulata
  World J. Microbiol. Biotechnol. 34 , art. 133 10.1007/s11274-018-2516-6
• Rodrigo Quejigo, J., Rosa, L.F.M., Harnisch, F. (2018):
  Electrochemical characterization of bed electrodes using voltammetry of single granules
  Electrochem. Commun. 90 , 78 - 82 10.1016/j.elecom.2018.04.009
• Russel, M., Sophocleous, M., JiaJia, S., Xu, W., Xiao, L., Maskow, T., Alam, M., Georgiou, J. (2018):
  High-frequency, dielectric spectroscopy for the detection of electrophysiological/biophysical differences in different bacteria types and concentrations
  Anal. Chim. Acta 1028 , 86 - 95 10.1016/j.aca.2018.04.045
• Schmeller, D.S., Loyau, A., Bao, D., Brack, W., Chatzinotas, A., De Vleeschouwer, F., Friesen, J., Gandois, L., Hansson, S.V., Haver, M., Le Roux, G., Shen, J., Teisserenc, R., Vredenburg, V.T. (2018):
  People, pollution and pathogens – Global change impacts in mountain freshwater ecosystems
  Sci. Total Environ. 622-623 , 756 - 763 10.1016/j.scitotenv.2017.12.006
• Schmidt, S.I., Kreft, J.-U., Mackay, R., Picioreanu, C., Thullner, M. (2018):
  Elucidating the impact of micro-scale heterogeneous bacterial distribution on biodegradation
  Adv. Water Resour. 116 , 67 - 76 10.1016/j.advwatres.2018.01.013
• Shan, Y., Harms, H., Wick, L.Y. (2018):
  Electric field effects on bacterial deposition and transport in porous media
  Environ. Sci. Technol. 52 (24), 14294 - 14301 10.1021/acs.est.8b03648
• Sharma, A., Schmidt, M., Kiesel, B., Mahato, N.K., Cralle, L., Singh, Y., Richnow, H.H., Gilbert, J.A., Arnold, W., Lal, R. (2018):
  Bacterial and archaeal viruses of Himalayan hot springs at Manikaran modulate host genomes
  Front. Microbiol. 9 , art. 3095 10.3389/fmicb.2018.03095
• Sträuber, H., Bühligen, F., Kleinsteuber, S., Dittrich‐Zechendorf, M. (2018):
  Carboxylic acid production from ensiled crops in anaerobic solid‐state fermentation ‐ trace elements as pH controlling agents support microbial chain elongation with lactic acid
  Eng. Life Sci. 18 (7), 447 - 458 10.1002/elsc.201700186
• van Gelder, S., Röhrig, N., Schattenberg, F., Cichocki, N., Schumann, J., Schmalz, G., Haak, R., Ziebolz, D., Müller, S. (2018):
  A cytometric approach to follow variation and dynamics of the salivary microbiota
  Methods 134–135 , 67 - 79 10.1016/j.ymeth.2017.08.009
• Vásquez-Piñeros, M.A., Martínez-Lavanchy, P.M., Jehmlich, N., Pieper, D.H., Rincón, C.A., Harms, H., Junca, H., Heipieper, H.J. (2018):
  Delftia sp. LCW, a strain isolated from a constructed wetland shows novel properties for dimethylphenol isomers degradation
  BMC Microbiol. 18 , art. 108 10.1186/s12866-018-1255-z
• Vilajeliu-Pons, A., Koch, C., Balaguer, M.D., Colprim, J., Harnisch, F., Puig, S. (2018):
  Microbial electricity driven anoxic ammonium removal
  Water Res. 130 , 168 - 175 10.1016/j.watres.2017.11.059
• Wintsche, B., Jehmlich, N., Popp, D., Harms, H., Kleinsteuber, S. (2018):
  Metabolic adaptation of methanogens in anaerobic digesters upon trace element limitation
  Front. Microbiol. 9 , art. 405 10.3389/fmicb.2018.00405
• Xu, J., He, H., Wang, Y.-Y., Yan, R., Zhou, L.-J., Liu, Y., Jiang, F.-L., Maskow, T., Liu, Y. (2018):
  New aspects of the environmental risks of quantum dots: prophage activation
  Environ. Sci.-Nano 5 (7), 1556 - 1566 10.1039/c8en00142a
• Xu, J., Jiang, F.-L., Liu, Y., Kiesel, B., Maskow, T. (2018):
  An enhanced bioindicator for calorimetric monitoring of prophage-activating chemicals in the trace concentration range
  Eng. Life Sci. 18 (7), 475 - 483 10.1002/elsc.201800026
• Xu, J., Kiesel, B., Kallies, R., Jiang, F.-L., Liu, Y., Maskow, T. (2018):
  A fast and reliable method for monitoring of prophage-activating chemicals
  Microb. Biotechnol. 11 (6), 1112 - 1120 10.1111/1751-7915.13042
• Ye, F., Ma, M.-H., Op den Camp, H.J.M., Chatzinotas, A., Li, L., Lv, M.-Q., Wu, S.-J., Wang, Y. (2018):
  Different recovery processes of soil ammonia oxidizers from flooding disturbance
  Microb. Ecol. 76 (4), 1041 - 1052 10.1007/s00248-018-1183-3
• Zhalnina, K., Louie, K.B., Hao, Z., Mansoori, N., Nunes da Rocha, U., Shi, S., Cho, H., Karaoz, U., Loqué, D., Bowen, B.P., Firestone, M.K., Northen, T.R., Brodie, E.L. (2018):
  Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly
  Nat. Microbiol. 3 (4), 470 - 480 10.1038/s41564-018-0129-3
• Zimmermann, J., Durek, P., Kühl, A.A., Schattenberg, F., Maschmeyer, P., Siracusa, F., Lehmann, K., Westendorf, K., Weber, M., Riedel, R., Müller, S., Radbruch, A., Chang, H.-D. (2018):
  The intestinal microbiota determines the colitis-inducing potential of T-bet-deficient Th cells in mice
  Eur. J. Immunol. 48 (1), 161 - 167 10.1002/eji.201747100

2017 (56)

• Altwasser, V., Pätz, R.R., Lemke, T., Paufler, S., Maskow, T. (2017):
  A simple method for the measurement of metabolic heat production rates during solid-state fermentations using β-carotene production with Blakeslea trispora as a model system
  Eng. Life Sci. 17 (6), 620 - 628 10.1002/elsc.201600208
• Bock, C., Chatzinotas, A., Boenigk, J. (2017):
  Genetic diversity in chrysophytes: Comparison of different gene markers
  Fottea 17 (2), 209 - 221 10.5507/fot.2017.005
• Bonk, F., Bastidas-Oyanedel, J.-R., Yousef, A.F., Schmidt, J.E. (2017):
  Exploring the selective lactic acid production from food waste in uncontrolled pH mixed culture fermentations using different reactor configurations
  Bioresour. Technol. 238 , 416 - 424 10.1016/j.biortech.2017.04.057
• Brown, R.K., Schmidt, U.C., Harnisch, F., Schröder, U. (2017):
  Combining hydrogen evolution and corrosion data - A case study on the economic viability of selected metal cathodes in microbial electrolysis cells
  J. Power Sources 356 , 473 - 483 10.1016/j.jpowsour.2017.01.076
• Cossarizza, A., Chang, H.-D., Radbruch, A., Akdis, M., Andrä, I., Annunziato, F., Bacher, P., Barnaba, V., Battistini, L., Bauer, W.M., Baumgart, S., Becher, B., Beisker, W., Berek, C., Blanco, A., Borsellino, G., Boulais, P.E., Brinkman, R.R., Büscher, M., Busch, D.H., Bushnell, T.P., Cao, X., Cavani, A., Chattopadhyay, P.K., Cheng, Q., Chow, S., Clerici, M., Cooke, A., Cosma, A., Cosmi, L., Cumano, A., Dang, V.D., Davies, D., De Biasi, S., Del Zotto, G., Müller, S., Müller, W., et al. (2017):
  Guidelines for the use of flow cytometry and cell sorting in immunological studies
  Eur. J. Immunol. 47 (10), 1584 - 1797 10.1002/eji.201646632
• Cruz Viggi, C., Simonetti, S., Palma, E., Pagliaccia, P., Braguglia, C., Fazi, S., Baronti, S., Assunta Navarra, M., Pettiti, I., Koch, C., Harnisch, F., Aulenta, F. (2017):
  Enhancing methane production from food waste fermentate using biochar: the added value of electrochemical testing in pre‑selecting the most effective type of biochar
  Biotechnol. Biofuels 10 , art. 303 10.1186/s13068-017-0994-7
• Dinasquet, J., Richert, I., Logares, R., Yager, P., Bertilsson, S., Riemann, L. (2017):
  Mixing of water masses caused by a drifting iceberg affects bacterial activity, community composition and substrate utilization capability in the Southern Ocean
  Environ. Microbiol. 19 (6), 2453 - 2467 10.1111/1462-2920.13769
• Geisen, S., Mitchell, E.A.D., Wilkinson, D.M., Adl, S., Bonkowski, M., Brown, M.W., Fiore-Donno, A.M., Heger, T.J., Jassey, V.E.J., Krashevska, V., Lahr, D.J.G., Marcisz, K., Mulot, M., Payne, R., Singer, D., Anderson, O.R., Charman, D.J., Ekelund, F., Griffiths, B.S., Rønn, R., Smirnov, A., Bass, ´D., Belbahri, L., Berney, C., Blandenier, Q., Chatzinotas, A., Clarholm, M., Dunthorn, M., Feest, A., Fernández, L.D., Foissner, W., Fournier, B., Gentekaki, E., Hájek, M., Helder, J., Jousset, A., Koller, R., Kumar, S., La Terza, A., Lamentowicz, M., Mazei, Y., Santos, S.S., Seppey, C.V.W., Spiegel, F.W., Walochnik, J., Winding, A., Lara, E. (2017):
  Soil protistology rebooted: 30 fundamental questions to start with
  Soil Biol. Biochem. 111 , 94 - 103 10.1016/j.soilbio.2017.04.001
• Gharasoo, M., Thullner, M., Elsner, M. (2017):
  Introduction of a new platform for parameter estimation of kinetically complex environmental systems
  Environ. Modell. Softw. 98 , 12 - 20 10.1016/j.envsoft.2017.09.005
• Gimkiewicz, C., Hegner, R., Gutensohn, M., Koch, C., Harnisch, F. (2017):
  Study of electrochemical reduction of CO₂ for future use in secondary microbial electrochemical technologies
  ChemSusChem 10 (5), 958 - 967 10.1002/cssc.201601675
• Guo, Y., Baumgart, S., Stärk, H.-J., Harms, H., Müller, S. (2017):
  Mass cytometry for detection of silver at the bacterial single cell level
  Front. Microbiol. 8 , art. 1326 10.3389/fmicb.2017.01326
• Guo, Y., Stärk, H.J., Hause, G., Schmidt, M., Harms, H., Wick, L.Y., Müller, S. (2017):
  Heterogenic response of prokaryotes toward silver nanoparticles and ions is facilitated by phenotypes and attachment of silver aggregates to cell surfaces
  Cytom. Part A 91 (8), 775 - 784 10.1002/cyto.a.23055
• Harnisch, F., Schmid, J. (2017):
  Editorial to special issue of Engineering in Life Sciences Emerging biotechnologies viewed by emerging bioengineers (EBEB)
  Eng. Life Sci. 17 (1), 4 - 5 10.1002/elsc.201600235
• Hegner, R., Koch, C., Riechert, V., Harnisch, F. (2017):
  Microbiome-based carboxylic acids production: from serum bottles to bioreactors
  RSC Advances 7 (25), 15362 - 15371 10.1039/C6RA28259H
• Hubalek, V., Buck, M., Tan, B., Foght, J., Wendeberg, A., Berry, D., Bertilsson, S., Eiler, A. (2017):
  Vitamin and amino acid auxotrophy in anaerobic consortia operating under methanogenic conditions
  mSystems 2 (5), e00038-17 10.1128/mSystems.00038-17
• Inostroza, N.G., Barra, P.J., Wick, L.Y., Mora, M.L., Jorquera, M.A. (2017):
  Effect of rhizobacterial consortia from undisturbed arid- and agro-ecosystems on wheat growth under different conditions
  Lett. Appl. Microbiol. 64 (2), 158 - 163 10.1111/lam.12697
• Jahangiri, E., Seiwert, B., Reemtsma, T., Schlosser, D. (2017):
  Laccase- and electrochemically mediated conversion of triclosan: Metabolite formation and influence on antibacterial activity
  Chemosphere 168 , 549 - 558 10.1016/j.chemosphere.2016.11.030
• Janke, L., Weinrich, S., Leite, A.F., Schüch, A., Nikolausz, M., Nelles, M., Stinner, W. (2017):
  Optimization of semi-continuous anaerobic digestion of sugarcane straw co-digested with filter cake: Effects of macronutrients supplementation on conversion kinetics
  Bioresour. Technol. 245 , 35 - 43 10.1016/j.biortech.2017.08.084
• Janke, L., Weinrich, S., Leite, A.F., Terzariol, F.K., Nikolausz, M., Nelles, M., Stinner, W. (2017):
  Improving anaerobic digestion of sugarcane straw for methane production: combined benefits of mechanical and sodium hydroxide pretreatment for process designing
  Energy Conv. Manag. 141 , 378 - 389 10.1016/j.enconman.2016.09.083
• Johnke, J., Baron, M., Leeuw, M., Kushmaro, A., Jurkevitch, E., Harms, H., Chatzinotas, A. (2017):
  A generalist protist predator enables coexistence in multitrophic predator-prey systems containing a phage and the bacterial predator Bdellovibrio
  Front. Ecol. Evol. 5 , art. 124 10.3389/fevo.2017.00124
• Johnke, J., Boenigk, J., Harms, H., Chatzinotas, A. (2017):
  Killing the killer: predation between protists and predatory bacteria
  FEMS Microbiol. Lett. 364 (9), fnx089 10.1093/femsle/fnx089
• Jousset, A., Bienhold, C., Chatzinotas, A., Gallien, L., Gobet, A., Kurm, V., Küsel, K., Rillig, M.C., Rivett, D.W., Salles, J.F., van der Heijden, M.G.A., Youssef, N.H., Zhang, X., Wei, Z., Hol, W.H.G. (2017):
  Where less may be more: how the rare biosphere pulls ecosystems strings
  ISME J. 11 (4), 853 - 862 10.1038/ismej.2016.174
• Kallies, R., Kiesel, B., Schmidt, M., Kacza, J., Ghanem, N., Narr, A., Zopfi, J., Wick, L.Y., Hackermüller, J., Harms, H., Chatzinotas, A. (2017):
  Complete genome sequence of Pseudoalteromonas phage vB_PspS-H40/1 (formerly H40/1) that infects Pseudoalteromonas sp. strain H40 and is used as biological tracer in hydrological transport studies
  Stand. Genomic Sci. 12 , art. 20 10.1186/s40793-017-0235-5
• Karakoç, C., Singer, A., Johst, K., Harms, H., Chatzinotas, A. (2017):
  Transient recovery dynamics of a predator–prey system under press and pulse disturbances
  BMC Ecology 17 , art. 13 10.1186/s12898-017-0123-2
• Kleinert, F., Kallies, R., Hort, M., Zweynert, A., Szekat, C., Nagel, M., Bierbaum, G. (2017):
  Influence of IS256 on genome variability and formation of small-colony variants in Staphylococcus aureus
  Antimicrob. Agents Chemother. 61 (8), e00144-17 10.1128/AAC.00144-17
• Koch, C., Kuchenbuch, A., Kracke, F., Bernhardt, P.V., Krömer, J.O., Harnisch, F. (2017):
  Predicting and experimental evaluating bio-electrochemical synthesis — A case study with Clostridium kluyveri
  Bioelectrochemistry 118 , 114 - 122 10.1016/j.bioelechem.2017.07.009
• König, S., Worrich, A., Centler, F., Wick, L.Y., Miltner, A., Kästner, M., Thullner, M., Frank, K., Banitz, T. (2017):
  Modelling functional resilience of microbial ecosystems: Analysis of governing processes
  Environ. Modell. Softw. 89 , 31 - 39 10.1016/j.envsoft.2016.11.025
• Korth, B., Maskow, T., Günther, S., Harnisch, F. (2017):
  Estimating the energy content of wastewater using combustion calorimetry and different drying processes
  Front. Energy Res. 5 , art. 23 10.3389/fenrg.2017.00023
• Kretzschmar, J., Koch, C., Liebetrau, J., Mertig, M., Harnisch, F. (2017):
  Electroactive biofilms as sensor for volatile fatty acids: Cross sensitivity, response dynamics, latency and stability
  Sens. Actuator B-Chem. 241 , 466 - 472 10.1016/j.snb.2016.10.097
• Kretzschmar, J., Riedl, S., Brown, R.K., Schröder, U., Harnisch, F. (2017):
  eLatrine: lessons learned from the development of a low-tech MFC based on cardboard electrodes for the treatment of human feces
  J. Electrochem. Soc. 164 (3), H3065 - H3072 10.1149/2.0121703jes
• Krueger, M.C., Seiwert, B., Prager, A., Zhang, S., Abel, B., Harms, H., Schlosser, D. (2017):
  Degradation of polystyrene and selected analogues by biological Fenton chemistry approaches: opportunities and limitations
  Chemosphere 173 , 520 - 528 10.1016/j.chemosphere.2017.01.089
• Lambrecht, J., Cichocki, N., Hübschmann, T., Koch, C., Harms, H., Müller, S. (2017):
  Flow cytometric quantification, sorting and sequencing of methanogenic archaea based on F₄₂₀ autofluorescence
  Microb. Cell. Fact. 16 , art. 180 10.1186/s12934-017-0793-7
• Liang, X., Guo, C., Liao, C., Liu, S., Wick, L.Y., Peng, D., Yi, X., Lu, G., Yin, H., Dang, Z. (2017):
  Drivers and applications of integrated clean-up technologies for surfactant-enhanced remediation of environments contaminated with polycyclic aromatic hydrocarbons (PAHs)
  Environ. Pollut. 225 , 129 - 140 10.1016/j.envpol.2017.03.045
• Lucas, R., Groeneveld, J., Harms, H., Johst, K., Frank, K., Kleinsteuber, S. (2017):
  A critical evaluation of ecological indices for the comparative analysis of microbial communities based on molecular datasets
  FEMS Microbiol. Ecol. 93 (1), fiw209 10.1093/femsec/fiw209
• Meyer-Cifuentes, I., Martinez-Lavanchy, P.M., Marin-Cevada, V., Böhnke, S., Harms, H., Müller, J.A., Heipieper, H.J. (2017):
  Isolation and characterization of Magnetospirillum sp. strain 15-1 as a representative anaerobic toluene-degrader from a constructed wetland model
  PLOS One 12 (4), e0174750 10.1371/journal.pone.0174750
• Narr, A., Nawaz, A., Wick, L.Y., Harms, H., Chatzinotas, A. (2017):
  Soil viral communities vary temporally and along a land use transect as revealed by virus-like particle counting and a modified community fingerprinting approach (fRAPD)
  Front. Microbiol. 8 , art. 1975 10.3389/fmicb.2017.01975
• Otto, S., Bruni, E.P., Harms, H., Wick, L.Y. (2017):
  Catch me if you can: dispersal and foraging of Bdellovibrio bacteriovorus 109J along mycelia
  ISME J. 11 (2), 386 - 393 10.1038/ismej.2016.135
• Otto, S., Harms, H., Wick, L.Y. (2017):
  Effects of predation and dispersal on bacterial abundance and contaminant biodegradation
  FEMS Microbiol. Ecol. 93 (2), fiw241 10.1093/femsec/fiw241
• Ozbayram, E.G., Kleinsteuber, S., Nikolausz, M., Ince, B., Ince, O. (2017):
  Effect of bioaugmentation by cellulolytic bacteria enriched from sheep rumen on methane production from wheat straw
  Anaerobe 46 , 122 - 130 10.1016/j.anaerobe.2017.03.013
• Perruchon, C., Chatzinotas, A., Omirou, M., Vasileiadis, S., Menkissoglou-Spiroudi, U., Karpouzas, D.G. (2017):
  Isolation of a bacterial consortium able to degrade the fungicide thiabendazole: the key role of a Sphingomonas phylotype
  Appl. Microbiol. Biotechnol. 101 (9), 3881 - 3893 10.1007/s00253-017-8128-5
• Pezzella, C., Macellaro, G., Sannia, G., Raganati, F., Olivieri, G., Marzocchella, A., Schlosser, D., Piscitelli, A. (2017):
  Exploitation of Trametes versicolor for bioremediation of endocrine disrupting chemicals in bioreactors
  PLOS One 12 (6), e0178758 10.1371/journal.pone.0178758
• Popp, D., Plugge, C.M., Kleinsteuber, S., Harms, H., Sträuber, H. (2017):
  Inhibitory effect of coumarin on syntrophic fatty acid-oxidizing and methanogenic cultures and biogas reactor microbiomes
  Appl. Environ. Microb. 83 (13), e00438-17 10.1128/AEM.00438-17
• Popp, D., von Gillhaussen, P., Weidlich, E.W.A., Sträuber, H., Harms, H., Temperton, V.M. (2017):
  Methane yield of biomass from extensive grassland is affected by compositional changes induced by order of arrival
  GCB Bioenergy 9 (10), 1555 - 1562 10.1111/gcbb.12441
• Pronk, G.J., Heister, K., Vogel, C., Babin, D., Bachmann, J., Ding, G.-C., Ditterich, F., Gerzabek, M.H., Giebler, J., Hemkemeyer, M., Kandeler, E., Mouvenchery, Y.K., Miltner, A., Poll, C., Schaumann, G.E., Smalla, K., Steinbach, A., Tanuwidjaja, I., Tebbe, C.C., Wick, L.Y., Woche, S.K., Totsche, K.U., Schloter, M., Kögel-Knabner, I. (2017):
  Interaction of minerals, organic matter, and microorganisms during biogeochemical interface formation as shown by a series of artificial soil experiments
  Biol. Fert. Soils 53 (1), 9 - 22 10.1007/s00374-016-1161-1
• Rakowska, M.I., Smit, M.P.J., Kupryianchyk, D., Qin, J., Koelmans, A.A., Rijnaarts, H.H.M., Grotenhuis, T. (2017):
  Turbulent mixing accelerates PAH desorption due to fragmentation of sediment particle aggregates
  J. Soils Sediments 17 (1), 277 - 285 10.1007/s11368-016-1556-5
• Rohde, M.-T., Tischer, S., Harms, H., Rohwerder, T. (2017):
  Production of 2-hydroxyisobutyric acid from methanol by Methylobacterium extorquens AM1 expressing (R)-3-hydroxybutyryl coenzyme A-isomerizing enzymes
  Appl. Environ. Microb. 83 (3), e02622-16 10.1128/AEM.02622-16
• Rosa, L.F.M., Hunger, S., Gimkiewicz, C., Zehnsdorf, A., Harnisch, F. (2017):
  Paving the way for bioelectrotechnology: Integrating electrochemistry into bioreactors
  Eng. Life Sci. 17 (1), 77 - 85 10.1002/elsc.201600105
• Rosa, L.F.M., Koch, C., Korth, B., Harnisch, F. (2017):
  Electron harvest and treatment of amendment free municipal wastewater using microbial anodes: A case study
  J. Power Sources 356 , 319 - 323 10.1016/j.jpowsour.2017.03.095
• Schmidt, J., Fester, T., Schulz, E., Michalzik, B., Buscot, F., Gutknecht, J. (2017):
  Effects of plant-symbiotic relationships on the living soil microbial community and microbial necromass in a long-term agro-ecosystem
  Sci. Total Environ. 581–582 , 756 - 765 10.1016/j.scitotenv.2017.01.005
• Schröder, U., Harnisch, F. (2017):
  Life electric—nature as a blueprint for the development of microbial electrochemical technologies
  Joule 1 (2), 244 - 252 10.1016/j.joule.2017.07.010
• Schultze-Nobre, L., Wiessner, A., Bartsch, C., Paschke, H., Stefanakis, A.I., Aylward, L.A., Kuschk, P. (2017):
  Removal of dimethylphenols and ammonium in laboratory-scale horizontal subsurface flow constructed wetlands
  Eng. Life Sci. 17 (12), 1224 - 1233 10.1002/elsc.201600213
• Urban, C., Harnisch, F. (2017):
  Deterioration of aqueous n-octanoate electrolysis with electrolytic conductivity collapse caused by the formation of n-octanoic acid/n-octanoate agglomerates
  ChemElectroChem 4 (6), 1378 - 1389 10.1002/celc.201700069
• Urban, C., Xu, J., Sträuber, H., dos Santos Dantas, T.R., Mühlenberg, J., Härtig, C., Angenent, L.T., Harnisch, F. (2017):
  Production of drop-in fuels from biomass at high selectivity by combined microbial and electrochemical conversion
  Energy Environ. Sci. 10 (10), 2231 - 2244 10.1039/c7ee01303e
• Winter, M., Thürmann, L., Gu, Z., Schüürmann, G., Herberth, G., Hinz, D., von Bergen, M., Harms, H., Olek, S., Röder, S., Borte, M., Eils, R., Lehmann, I., Trump, S. (2017):
  The benzene metabolite 1,4-benzoquinone reduces regulatory T-cell function: A potential mechanism for tobacco smoke–associated atopic dermatitis
  J. Allergy Clin. Immunol. 140 (2), 603 - 605 10.1016/j.jaci.2017.01.034
• Worrich, A., Stryhanyuk, H., Musat, N., König, S., Banitz, T., Centler, F., Frank, K., Thullner, M., Harms, H., Richnow, H.-H., Miltner, A., Kästner, M., Wick, L.Y. (2017):
  Mycelium-mediated transfer of water and nutrients stimulates bacterial activity in dry and oligotrophic environments
  Nat. Commun. 8 , art. 15472 10.1038/ncomms15472
• Zhou, Z.-Q., Yang, L.-Y., Yan, R., Zhao, J., Liu, Y.-Q., Lai, L., Jiang, F.-L., Maskow, T., Liu, Y. (2017):
  Mn-Doped ZnSe quantum dots initiated mild and rapid cation exchange for tailoring the composition and optical properties of colloid nanocrystals: novel template, new applications
  Nanoscale 9 (8), 2824 - 2835 10.1039/C6NR09094J

2016 (52)

• Akyol, C., Ozbayram, E.G., Kleinsteuber, S., Ince, B. (2016):
  Anaerobic co-digestion of cow manure and barley: Effect of cow manure to barley ratio on methane production and digestion stability
  Environ. Prog. Sustain. Energy 35 (2), 589 - 595 10.1002/ep.12250
• Alvarez-Zaldívar, P., Centler, F., Maier, U., Thullner, M., Imfeld, G. (2016):
  Biogeochemical modelling of in situ biodegradation and stable isotope fractionation of intermediate chloroethenes in a horizontal subsurface flow wetland
  Ecol. Eng. 90 , 170 - 179 10.1016/j.ecoleng.2016.01.037
• Banitz, T., Frank, K., Wick, L.Y., Harms, H., Johst, K. (2016):
  Spatial metrics as indicators of biodegradation benefits from bacterial dispersal networks
  Ecol. Indic. 60 , 54 - 63 10.1016/j.ecolind.2015.06.021
• Berthold, T., Centler, F., Hübschmann, T., Remer, R., Thullner, M., Harms, H., Wick, L.Y. (2016):
  Mycelia as a focal point for horizontal gene transfer among soil bacteria
  Sci. Rep. 6 , art. 36390 10.1038/srep36390
• Brussaard, C.P.D., Peperzak, L., Beggah, S., Wick, L.Y., Wuerz, B., Weber, J., Arey, J.S., van der Burg, B., Jonas, A., Huisman, J., van der Meer, J.R. (2016):
  Immediate ecotoxicological effects of short-lived oil spills on marine biota
  Nat. Commun. 7 , art. 11206 10.1038/ncomms11206
• Bühligen, F., Lucas, R., Nikolausz, M., Kleinsteuber, S. (2016):
  A T-RFLP database for the rapid profiling of methanogenic communities in anaerobic digesters
  Anaerobe 39 , 114 - 116 10.1016/j.anaerobe.2016.03.013
• Chakravorty, S., Bhattacharya, S., Chatzinotas, A., Chakraborty, W., Bhattacharya, D., Gachhui, R. (2016):
  Kombucha tea fermentation: Microbial and biochemical dynamics
  Int. J. Food Microbiol. 220 , 63 - 72 10.1016/j.ijfoodmicro.2015.12.015
• Coban, H., Miltner, A., Centler, F., Kästner, M. (2016):
  Effects of compost, biochar and manure on carbon mineralization of biogas residues applied to soil
  Eur. J. Soil Sci. 67 (2), 217 - 225 10.1111/ejss.12326
• de Carvalho, C.C.C.R., Fischer, M.A., Kirsten, S., Würz, B., Wick, L.Y., Heipieper, H.J. (2016):
  Adaptive response of Rhodococcus opacus PWD4 to salt and phenolic stress on the level of mycolic acids
  AMB Express 6 , art. 66 10.1186/s13568-016-0241-9
• Ehlen, L., Tödtmann, J., Specht, S., Kallies, R., Papies, J., Müller, M.A., Junglen, S., Drosten, C., Eckerle, I. (2016):
  Epithelial cell lines of the cotton rat (Sigmodon hispidus) are highly susceptible in vitro models to zoonotic Bunya-, Rhabdo-, and Flaviviruses
  Virol. J. 13 , art. 74 10.1186/s12985-016-0531-5
• Ghanem, N., Kiesel, B., Kallies, R., Harms, H., Chatzinotas, A., Wick, L.Y. (2016):
  Marine phages as tracers: effects of size, morphology, and physico–chemical surface properties on transport in a porous medium
  Environ. Sci. Technol. 50 (23), 12816 - 12824 10.1021/acs.est.6b04236
• Gimkiewicz, C., Hunger, S., Harnisch, F. (2016):
  Evaluating the feasibility of microbial electrosynthesis based on Gluconobacter oxydans
  ChemElectroChem 3 (9), 1337 - 1346 10.1002/celc.201600175
• Grossmann, L., Beisser, D., Bock, C., Chatzinotas, A., Jensen, M., Preisfeld, A., Psenner, R., Rahmann, S., Wodniok, S., Boenigk, J. (2016):
  Trade‐off between taxon diversity and functional diversity in European lake ecosystems
  Mol. Ecol. 25 (23), 5876 - 5888 10.1111/mec.13878
• Günther, S., Faust, K., Schumann, J., Harms, H., Raes, J., Müller, S. (2016):
  Species-sorting and mass-transfer paradigms control managed natural metacommunities
  Environ. Microbiol. 18 (12), 4862 - 4877 10.1111/1462-2920.13402
• Hofmann, J., Peltri, G., Sträuber, H., Müller, L., Schumacher, B., Müller, U., Liebetrau, J. (2016):
  Statistical interpretation of semi-continuous anaerobic digestion experiments on the laboratory scale
  Chem. Eng. Technol. 39 (4), 643 - 651 10.1002/ceat.201500473
• Hofmann, U., Schlosser, D. (2016):
  Biochemical and physicochemical processes contributing to the removal of endocrine-disrupting chemicals and pharmaceuticals by the aquatic ascomycete Phoma sp. UHH 5-1-03
  Appl. Microbiol. Biotechnol. 100 (5), 2381 - 2399 10.1007/s00253-015-7113-0
• Jahn, M., Vorpahl, C., Hübschmann, T., Harms, H., Müller, S. (2016):
  Copy number variability of expression plasmids determined by cell sorting and Droplet Digital PCR
  Microb. Cell. Fact. 15 , art. 211 10.1186/s12934-016-0610-8
• Janke, A., Leite, A., Batista, K., Weinrich, S., Sträuber, H., Nikolausz, M., Nelles, M., Stinner, W. (2016):
  Optimization of hydrolysis and volatile fatty acids production from sugarcane filter cake: Effects of urea supplementation and sodium hydroxide pretreatment
  Bioresour. Technol. 199 , 235 - 244 10.1016/j.biortech.2015.07.117
• Janke, L., Leite, A.F., Batista, K., Silva, W., Nikolausz, M., Nelles, M., Stinner, W. (2016):
  Enhancing biogas production from vinasse in sugarcane biorefineries: Effects of urea and trace elements supplementation on process performance and stability
  Bioresour. Technol. 217 , 10 - 20 10.1016/j.biortech.2016.01.110
• Janke, L., Leite, A.F., Nikolausz, M., Radetski, C.M., Nelles, M., Stinner, W. (2016):
  Comparison of start-up strategies and process performance during semi-continuous anaerobic digestion of sugarcane filter cake co-digested with bagasse
  Waste Manage. 48 , 199 - 208 10.1016/j.wasman.2015.11.007
• Jeske, J.T., Müller, R.A., Wendeberg, A., Bertilsson, S. (2016):
  Microscale decoupling of sediment oxygen consumption and microbial biomass in an oligotrophic lake
  Freshw. Biol. 61 (9), 1477 - 1491 10.1111/fwb.12787
• Khan, A.M., Wick, L.Y., Harms, H., Thullner, M. (2016):
  Biodegradation of vapor-phase toluene in unsaturated porous media: Column experiments
  Environ. Pollut. 211 , 325 - 331 10.1016/j.envpol.2016.01.013
• Koch, C., Harnisch, F. (2016):
  What is the essence of microbial electroactivity?
  Front. Microbiol. 7 , art. 1890 10.3389/fmicb.2016.01890
• Koch, C., Harnisch, F. (2016):
  Is there a specific ecological niche for electroactive microorganisms?
  ChemElectroChem 3 (9), 1282 - 1295 10.1002/celc.201600079
• Korth, B., Maskow, T., Picioreanu, C., Harnisch, F. (2016):
  The microbial electrochemical Peltier heat: an energetic burden and engineering chance for primary microbial electrochemical technologies
  Energy Environ. Sci. 9 (8), 2539 - 2544 10.1039/c6ee01428c
• Kretzschmar, J., Rosa, L.F.M., Zosel, J., Mertig, M., Liebetrau, J., Harnisch, F. (2016):
  A microbial biosensor platform for inline quantification of acetate in anaerobic digestion: potential and challenges
  Chem. Eng. Technol. 39 (4), 637 - 642 10.1002/ceat.201500406
• Krueger, M.C., Bergmann, M., Schlosser, D. (2016):
  Widespread ability of fungi to drive quinone redox cycling for biodegradation
  FEMS Microbiol. Lett. 363 (11), fnw105 10.1093/femsle/fnw105
• Leite, A.F., Janke, L., Harms, H., Richnow, H.-H., Nikolausz, M. (2016):
  Lessons learned from the microbial ecology resulting from different inoculation strategies for biogas production from waste products of the bioethanol/sugar industry
  Biotechnol. Biofuels 9 , art. 144 10.1186/s13068-016-0548-4
• Lieder, S., Jahn, M., Koepff, J., Müller, S., Takors, R. (2016):
  Environmental stress speeds up DNA replication in Pseudomonas putida in chemostat cultivations
  Biotechnol. J. 11 (1), 155 - 163 10.1002/biot.201500059
• Lünsmann, V., Kappelmeyer, U., Benndorf, R., Martínez-Lavanchy, P.M., Taubert, A., Adrian, L., Duarte, M., Pieper, D.H., von Bergen, M., Müller, J.A., Heipieper, H.J., Jehmlich, N. (2016):
  In situ protein-SIP highlights Burkholderiaceae as key players degrading toluene by para ring hydroxylation in a constructed wetland model
  Environ. Microbiol. 18 (4), 1176 - 1186 10.1111/1462-2920.13133
• Mulat, D.G., Jacobi, H.F., Feilberg, A., Adamsen, A.P.S., Richnow, H.-H., Nikolausz, M. (2016):
  Changing feeding regimes to demonstrate flexible biogas production: effects on process performance, microbial community structure, and methanogenesis pathways
  Appl. Environ. Microb. 82 (2), 438 - 449 10.1128/AEM.02320-15
• Newcomer, M.E., Hubbard, S.S., Fleckenstein, J.H., Maier, U., Schmidt, C., Thullner, M., Ulrich, C., Flipo, N., Rubin, Y. (2016):
  Simulating bioclogging effects on dynamic riverbed permeability and infiltration
  Water Resour. Res. 52 (4), 2883 - 2900 10.1002/2015wr018351
• Otto, S., Banitz, T., Thullner, M., Harms, H., Wick, L.Y. (2016):
  Effects of facilitated bacterial dispersal on the degradation and emission of a desorbing contaminant
  Environ. Sci. Technol. 50 (12), 6320 - 6326 10.1021/acs.est.6b00567
• Popp, D., Harms, H., Sträuber, H. (2016):
  The alkaloid gramine in the anaerobic digestion process—inhibition and adaptation of the methanogenic community
  Appl. Microbiol. Biotechnol. 100 (16), 7311 - 7322 10.1007/s00253-016-7571-z
• Rohde, M.-T., Paufler, S., Harms, H., Maskow, T. (2016):
  Calorespirometric feeding control enhances bioproduction from toxic feedstocks—Demonstration for biopolymer production out of methanol
  Biotechnol. Bioeng. 113 (10), 2113 - 2121 10.1002/bit.25986
• Saleem, M., Fetzer, I., Harms, H., Chatzinotas, A. (2016):
  Trophic complexity in aqueous systems: bacterial species richness and protistan predation regulate dissolved organic carbon and dissolved total nitrogen removal
  Proc. R. Soc. B-Biol. Sci. 283 (1825), art. 20152724 10.1098/rspb.2015.2724
• Schweigert, M., Herrmann, S., Miltner, A., Fester, T., Kästner, M. (2016):
  Corrigendum to "Fate of ectomycorrhizal fungal biomass in a soil bioreactor system and its contribution to soil organic matter formation" [Soil Biol. Biogeochem. 88 (2015) 120–127]
  Soil Biol. Biochem. 92 , 242 10.1016/j.soilbio.2015.09.004
• Stang, C., Harnisch, F. (2016):
  The dilemma of supporting electrolytes for electroorganic synthesis: a case study on Kolbe electrolysis
  ChemSusChem 9 (1), 50 - 60 10.1002/cssc.201501407
• Starke, R., Keller, A., Jehmlich, N., Vogt, C., Richnow, H.H., Kleinsteuber, S., von Bergen, M., Seifert, J. (2016):
  Pulsed ¹³C₂-acetate protein-SIP unveils Epsilonproteobacteria as dominant acetate utilizers in a sulfate-reducing microbial community mineralizing benzene
  Microb. Ecol. 71 (4), 901 - 911 10.1007/s00248-016-0731-y
• Stefanakis, A.I., Seeger, E., Dorer, C., Sinke, A., Thullner, M. (2016):
  Performance of pilot-scale horizontal subsurface flow constructed wetlands treating groundwater contaminated with phenols and petroleum derivatives
  Ecol. Eng. 95 , 514 - 526 10.1016/j.ecoleng.2016.06.105
• Steinauer, K., Chatzinotas, A., Eisenhauer, N. (2016):
  Root exudate cocktails: the link between plant diversity and soil microorganisms?
  Ecol. Evol. 6 (20), 7387 - 7396 10.1002/ece3.2454
• Stolpovsky, K., Fetzer, I., van Cappellen, P., Thullner, M. (2016):
  Influence of dormancy on microbial competition under intermittent substrate supply: insights from model simulations
  FEMS Microbiol. Ecol. 92 (6), fiw071 10.1093/femsec/fiw071
• Sträuber, H., Lucas, R., Kleinsteuber, S. (2016):
  Metabolic and microbial community dynamics during the anaerobic digestion of maize silage in a two-phase process
  Appl. Microbiol. Biotechnol. 100 (1), 479 - 491 10.1007/s00253-015-6996-0
• Vila, T., Nazir, R., Rozental, S., dos Santos, G.M.P., Calixto, R.O.R., Barreto-Bergter, E., Wick, L.Y., van Elsas, J.D. (2016):
  The role of hydrophobicity and surface receptors at hyphae of Lyophyllum sp. strain Karsten in the interaction with Burkholderia terrae BS001 – Implications for interactions in soil
  Front. Microbiol. 7 , art. 1689 10.3389/fmicb.2016.01689
• Wintsche, B., Glaser, K., Sträuber, H., Centler, F., Liebetrau, J., Harms, H., Kleinsteuber, S. (2016):
  Trace elements induce predominance among methanogenic activity in anaerobic digestion
  Front. Microbiol. 7 , art. 2034 10.3389/fmicb.2016.02034
• Witkowski, P.T., Drexler, J.F., Kallies, R., Ličková, M., Bokorová, S., Mananga, G.D., Szemes, T., Leroy, E.M., Krüger, D.H., Drosten, C., Klempa, B. (2016):
  Phylogenetic analysis of a newfound bat-borne hantavirus supports a laurasiatherian host association for ancestral mammalian hantaviruses
  Infect. Genet. Evol. 41 , 113 - 119 10.1016/j.meegid.2016.03.036
• Worrich, A., König, S., Banitz, T., Centler, F., Frank, K., Thullner, M., Harms, H., Miltner, A., Wick, L.Y., Kaestner, M. (2016):
  Bacterial dispersal promotes biodegradation in heterogeneous systems exposed to osmotic stress
  Front. Microbiol. 7 , art. 1214 10.3389/fmicb.2016.01214
• Worrich, A., König, S., Miltner, A., Banitz, T., Centler, F., Frank, K., Thullner, M., Harms, H., Kästner, M., Wick, L.Y. (2016):
  Mycelium-like networks increase bacterial dispersal, growth, and biodegradation in a model ecosystem at various water potentials
  Appl. Environ. Microb. 82 (10), 2902 - 2908 10.1128/AEM.03901-15
• Zhou, S., Nikolausz, M., Zhang, J., Riya, S., Terada, A., Hosomi, M. (2016):
  Variation of the microbial community in thermophilic anaerobic digestion of pig manure mixed with different ratios of rice straw
  J. Biosci. Bioeng. 122 (3), 334 - 340 10.1016/j.jbiosc.2016.02.012
• Ziganshin, A.M., Schmidt, T., Lv, Z., Liebetrau, J., Richnow, H.H., Kleinsteuber, S., Nikolausz, M. (2016):
  Reduction of the hydraulic retention time at constant high organic loading rate to reach the microbial limits of anaerobic digestion in various reactor systems
  Bioresour. Technol. 217 , 62 - 71 10.1016/j.biortech.2016.01.096
• Ziganshin, A.M., Ziganshina, E.E., Kleinsteuber, S., Nikolausz, M. (2016):
  Comparative analysis of methanogenic communities in different laboratory-scale anaerobic digesters
  Archaea 2016 , art. 3401272 10.1155/2016/3401272
• Zimmermann, J., Hübschmann, T., Schattenberg, F., Schumann, J., Durek, P., Riedel, R., Friedrich, M., Glauben, R., Siegmund, B., Radbruch, A., Müller, S., Chang, H.-D. (2016):
  High-resolution microbiota flow cytometry reveals dynamic colitis-associated changes in fecal bacterial composition
  Eur. J. Immunol. 46 (5), 1300 - 1303 10.1002/eji.201646297

2015 (58)

• Šantl-Temkiv, T., Sahyoun, M., Finster, K., Hartmann, S., Augustin-Bauditz, S., Stratmann, F., Wex, H., Clauss, T., Woetmann Nielsen, N., Havskov Sørensen, J., Smith Korsholm, U., Wick, L.Y., Gosewinkel Karlson, U. (2015):
  Characterization of airborne ice-nucleation-active bacteria and bacterial fragments
  Atmos. Environ. 109 , 105 - 117 10.1016/j.atmosenv.2015.02.060
• Araya, K., Ugarte, A., Azócar, L., Valerio, O., Wick, L.Y., Ciudad, G. (2015):
  Whole cell three phase bioreactors allow for effective production of fatty acid alkyl esters derived from microalgae lipids
  Fuel 144 , 25 - 32 10.1016/j.fuel.2014.12.014
• Brown, R.K., Harnisch, F., Dockhorn, T., Schröder, U. (2015):
  Examining sludge production in bioelectrochemical systems treating domestic wastewater
  Bioresour. Technol. 198 , 913 - 917 10.1016/j.biortech.2015.09.081
• Centler, F., Thullner, M. (2015):
  Chemotactic preferences govern competition and pattern formation in simulated two-strain microbial communities
  Front. Microbiol. 6 , art. 40 10.3389/fmicb.2015.00040
• dos Santos, T.R., Harnisch, F., Nilges, P., Schröder, U. (2015):
  Electrochemistry for biofuel generation: transformation of fatty acids and triglycerides to diesel-like olefin/ether mixtures and olefins
  ChemSusChem 8 (5), 886 - 893 10.1002/cssc.201403249
• dos Santos, T.R., Nilges, P., Sauter, W., Harnisch, F., Schröder, U. (2015):
  Electrochemistry for the generation of renewable chemicals: electrochemical conversion of levulinic acid
  RSC Advances 5 (34), 26634 - 26643 10.1039/c4ra16303f
• El Amrani, A., Dumas, A.-S., Wick, L.Y., Yergeau, E., Berthomé, R. (2015):
  “Omics” insights into PAH degradation toward improved green remediation biotechnologies
  Environ. Sci. Technol. 49 (19), 11281 - 11291 10.1021/acs.est.5b01740
• Fester, T. (2015):
  Plant metabolite profiles and the buffering capacities of ecosystems
  Phytochemistry 110 , 6 - 12 10.1016/j.phytochem.2014.12.015
• Fetzer, I., Johst, K., Schäwe, R., Banitz, T., Harms, H., Chatzinotas, A. (2015):
  The extent of functional redundancy changes as species’ roles shift in different environments
  Proc. Natl. Acad. Sci. U.S.A. 112 (48), 14888 - 14893 10.1073/pnas.1505587112
• Freel, K.C., Krueger, M.C., Farasin, J., Brochier-Armanet, C., Barbe, V., Andrès, J., Cholley, P.-E., Dillies, M.-A., Jagla, B., Koechler, S., Leva, Y., Magdelenat, G., Plewniak, F., Proux, C., Coppée, J.-Y., Bertin, P.N., Heipieper, H.J., Arsène-Ploetze, F. (2015):
  Adaptation in toxic environments: arsenic genomic islands in the bacterial genus Thiomonas
  PLOS One 10 (9), e0139011 10.1371/journal.pone.0139011
• Gharasoo, M., Centler, F., van Cappellen, P., Wick, L.Y., Thullner, M. (2015):
  Kinetics of substrate biodegradation under the cumulative effects of bioavailability and self-inhibition
  Environ. Sci. Technol. 49 (9), 5529 - 5537 10.1021/es505837v
• Glaser, K., Kuppardt, A., Boenigk, J., Harms, H., Fetzer, I., Chatzinotas, A. (2015):
  The influence of environmental factors on protistan microorganisms in grassland soils along a land-use gradient
  Sci. Total Environ. 537 , 33 - 42 10.1016/j.scitotenv.2015.07.158
• Grobbler, C., Virdis, B., Nouwens, A., Harnisch, F., Rabaey, K., Bond, P.L. (2015):
  Use of SWATH mass spectrometry for quantitative proteomic investigation of Shewanella oneidensis MR-1 biofilms grown on graphite cloth electrodes
  Syst. Appl. Microbiol. 38 , 135 - 139 10.1016/j.syapm.2014.11.007
• Günther, S., Müller, S. (2015):
  Facilitated gate setting by sequential dot plot scanning
  Cytom. Part A 87 (7), 661 - 664 10.1002/cyto.a.22656
• Harnisch, F., Rosa, L.F.M., Kracke, F., Virdis, B., Krömer, J.O. (2015):
  Electrifying white biotechnology: engineering and economic potential of electricity-driven bio-production
  ChemSusChem 8 (5), 758 - 766 10.1002/cssc.201402736
• Jahn, M., Günther, S., Müller, S. (2015):
  Non-random distribution of macromolecules as driving forces for phenotypic variation
  Curr. Opin. Microbiol. 25 , 49 - 55 10.1016/j.mib.2015.04.005
• Janke, L., Leite, A., Nikolausz, M., Schmidt, T., Liebetrau, J., Nelles, M., Stinner, W. (2015):
  Biogas production from sugarcane waste: assessment on kinetic challenges for process designing
  Int. J. Mol. Sci. 16 (9), 20685 - 20703 10.3390/ijms160920685
• Jimenez-Sanchez, C., Wick, L.Y., Cantos, M., Ortega-Calvo, J.-J. (2015):
  Impact of dissolved organic matter on bacterial tactic motility, attachment, and transport
  Environ. Sci. Technol. 49 (7), 4498 - 4505 10.1021/es5056484
• Keller, A.H., Schleinitz, K.M., Starke, R., Bertilsson, S., Vogt, C., Kleinsteuber, S. (2015):
  Metagenome-based metabolic reconstruction revealsthe ecophysiological function of Epsilonproteobacteria in a hydrocarbon-contaminated sulfidic aquifer
  Front. Microbiol. 6 , art. 1396 10.3389/fmicb.2015.01396
• King, N., Müller, S. (2015):
  Environmental microbiology: Revisiting the physiology of microorganisms on the single cell scale. Editorial overview
  Curr. Opin. Microbiol. 25 , v - vi 10.1016/j.mib.2015.06.006
• Koch, C., Kuchenbuch, A., Kretzschmar, J., Wedwitschka, H., Liebetrau, J., Müller, S., Harnisch, F. (2015):
  Coupling electric energy and biogas production in anaerobic digesters – impacts on the microbiome
  RSC Advances 5 (40), 31329 - 31340 10.1039/C5RA03496E
• Korth, B., Rosa, L.F.M., Harnisch, F., Picioreanu, C. (2015):
  A framework for modeling electroactive microbial biofilms performing direct electron transfer
  Bioelectrochemistry 106 , 194 - 206 10.1016/j.bioelechem.2015.03.010
• Krohn, S., Engelmann, C., Raatz, P., Hoffmeister, A., Böhlig, A., Zeller, K., Böhm, S., Chatzinotas, A., Berg, T. (2015):
  Duodenal microbiota is not the origin for bacterial translocation in liver cirrhosis
  J. Hepatol. 62 (Suppl. 2), S372 10.1016/S0168-8278(15)30401-3
• Krueger, M.C., Harms, H., Schlosser, D. (2015):
  Prospects for microbiological solutions to environmental pollution with plastics
  Appl. Microbiol. Biotechnol. 99 (1), 8857 - 8874 10.1007/s00253-015-6879-4
• Krueger, M.C., Hofmann, U., Moeder, M., Schlosser, D. (2015):
  Potential of wood-rotting fungi to attack polystyrene sulfonate and its depolymerisation by Gloeophyllum trabeum via hydroquinone-driven Fenton chemistry
  PLOS One 10 (7), e0131773 10.1371/journal.pone.0131773
• Kurteva-Yaneva, N., Zahn, M., Weichler, M.-T., Starke, R., Harms, H., Müller, R.H., Sträter, N., Rohwerder, T. (2015):
  Structural basis of the stereospecificity of bacterial B₁₂-dependent 2-hydroxyisobutyryl-CoA mutase
  J. Biol. Chem. 290 , 9727 - 9737 10.1074/jbc.M115.645689
• Leite, A.F., Janke, L., Harms, H., Zang, J.W., Fonseca-Zang, W.A., Stinner, W., Nikolausz, M. (2015):
  Assessment of the variations in characteristics and methane potential of major waste products from the Brazilian bioethanol industry along an operating season
  Energy Fuels 29 (7), 4022 - 4029 10.1021/ef502807s
• Leite, A.F., Janke, L., Lv, Z., Harms, H., Richnow, H.-H., Nikolausz, M. (2015):
  Improved monitoring of semi-continuous anaerobic digestion of sugarcane waste: effects of increasing organic loading rate on methanogenic community dynamics
  Int. J. Mol. Sci. 16 (10), 23210 - 23226 10.3390/ijms161023210
• Lindmeyer, M., Jahn, M., Vorpahl, C., Müller, S., Schmid, A., Bühler, B. (2015):
  Variability in subpopulation formation propagates into biocatalytic variability of engineered Pseudomonas putida strains
  Front. Microbiol. 6 , art. 1042 10.3389/fmicb.2015.01042
• Lucas, R., Kuchenbuch, A., Fetzer, I., Harms, H., Kleinsteuber, S. (2015):
  Long-term monitoring reveals stable and remarkably similar microbial communities in parallel full-scale biogas reactors digesting energy crops
  FEMS Microbiol. Ecol. 91 (3), fiv004 10.1093/femsec/fiv004
• Martínez-Lavanchy, P.M., Chen, Z., Lünsmann, V., Marin-Cevada, V., Vilchez-Vargas, R., Pieper, D.H., Reiche, N., Kappelmeyer, U., Imparato, V., Junca, H., Nijenhuis, I., Müller, J.A., Kuschk, P., Heipieper, H.J. (2015):
  Microbial toluene removal in hypoxic model constructed wetlands occurs predominantly via the ring monooxygenation pathway
  Appl. Environ. Microb. 81 (18), 6241 - 6252 10.1128/AEM.01822-15
• Maskow, T., Paufler, S. (2015):
  What does calorimetry and thermodynamics of living cells tell us?
  Methods 76 , 3 - 10 10.1016/j.ymeth.2014.10.035
• Melzer, S., Winter, G., Jäger, K., Hübschmann, T., Hause, G., Syrowatka, F., Harms, H., Tárnok, A., Müller, S. (2015):
  Cytometric patterns reveal growth states of Shewanella putrefaciens
  Microb. Biotechnol. 8 (3), 379 - 391 10.1111/1751-7915.12154
• Otto, B., Beuchel, C., Liers, C., Reisser, W., Harms, H., Schlosser, D. (2015):
  Laccase-like enzyme activities from chlorophycean green algae with potential for bioconversion of phenolic pollutants
  FEMS Microbiol. Lett. 362 (11), fnv072 10.1093/femsle/fnv072
• Pfeiffer, M., Batbayar, G., Hofmann, J., Siegfried, K., Karthe, D., Hahn-Tomer, S. (2015):
  Investigating arsenic (As) occurrence and sources in ground, surface, waste and drinking water in northern Mongolia
  Environ. Earth Sci. 73 (2), 649 - 662 10.1007/s12665-013-3029-0
• Popp, D., Schrader, S., Kleinsteuber, S., Harms, H., Sträuber, H. (2015):
  Biogas production from coumarin-rich plants—inhibition by coumarin and recovery by adaptation of the bacterial community
  FEMS Microbiol. Ecol. 91 (9), fiv103 10.1093/femsec/fiv103
• Porsch, K., Wirth, B., Tóth, E.M., Schattenberg, F., Nikolausz, M. (2015):
  Characterization of wheat straw-degrading anaerobic alkali-tolerant mixed cultures from soda lake sediments by molecular and cultivation techniques
  Microb. Biotechnol. 8 (5), 801 - 814 10.1111/1751-7915.12272
• Pous, N., Koch, C., Vilà-Rovira, A., Balaguer, M.D., Colprim, J., Mühlenberg, J., Müller, S., Harnisch, F., Puig, S. (2015):
  Monitoring and engineering reactor microbiomes of denitrifying bioelectrochemical systems
  RSC Advances 5 (84), 68326 - 68333 10.1039/c5ra12113b
• Pradhan, A., Seena, S., Schlosser, D., Gerth, K., Helm, S., Dobritzsch, M., Krauss, G.-J., Dobritzsch, D., Pascoal, C., Cássio, F. (2015):
  Fungi from metal-polluted streams may have high ability to cope with the oxidative stress induced by copper oxide nanoparticles
  Environ. Toxicol. Chem. 34 (4), 923 - 930 10.1002/etc.2879
• Przybylski, D., Rohwerder, T., Dilßner, C., Maskow, T., Harms, H., Müller, R.H. (2015):
  Exploiting mixtures of H₂, CO₂, and O₂ for improved production of methacrylate precursor 2-hydroxyisobutyric acid by engineered Cupriavidus necator strains
  Appl. Microbiol. Biotechnol. 99 (5), 2131 - 2145 10.1007/s00253-014-6266-6
• Qin, J., Moustafa, A., Harms, H., El-Din, M.G., Wick, L.Y. (2015):
  The power of power: electrokinetic control of PAH interactions with exfoliated graphite
  J. Hazard. Mater. 288 , 25 - 33 10.1016/j.jhazmat.2015.02.008
• Qin, J., Sun, X., Liu, Y., Berthold, T., Harms, H., Wick, L.Y. (2015):
  Electrokinetic control of bacterial deposition and transport
  Environ. Sci. Technol. 49 (9), 5663 - 5671 10.1021/es506245y
• Richter, S., Fetzer, I., Thullner, M., Centler, F., Dittrich, P. (2015):
  Towards rule-based metabolic databases: a requirement analysis based on KEGG
  Int. J. Data Min. Bioinform. 13 (3), 289 - 319 10.1504/IJDMB.2015.072103
• Rödiger, S., Burdukiewicz, M., Blagodatskikh, K., Jahn, M., Schierack, P. (2015):
  R as an environment for the reproducible analysis of DNA amplification experiments
  R Journal 7 (1), 127 - 150
• Schkolnik, G., Schmidt, M., Mazza, M.G., Harnisch, F., Musat, N. (2015):
  In situ analysis of a silver nanoparticle-precipitating Shewanella biofilm by surface enhanced confocal Raman microscopy
  PLOS One 10 (12), e0145871 10.1371/journal.pone.0145871
• Schröder, U., Harnisch, F., Angenent, L.T. (2015):
  Microbial electrochemistry and technology: terminology and classification
  Energy Environ. Sci. 8 (2), 513 - 519 10.1039/c4ee03359k
• Schweigert, M., Herrmann, S., Miltner, A., Fester, T., Kästner, M. (2015):
  Fate of ectomycorrhizal fungal biomass in a soil bioreactor system and its contribution to soil organic matter formation
  Soil Biol. Biochem. 88 , 120 - 127 10.1016/j.soilbio.2015.05.012
• Shamim, S., Rehman, A. (2015):
  Antioxidative enzyme profiling and biosorption ability of Cupriavidus metallidurans CH34 and Pseudomonas putida mt2 under cadmium stress
  J. Basic Microbiol. 55 (3), 374 - 381 10.1002/jobm.201300038
• Shan, Y., Song, Y., Liu, Y., Liu, R., Du, J., Zeng, P. (2015):
  Adsorption of berberine by polymeric resin H103: kinetics and thermodynamics
  Environ. Earth Sci. 73 (9), 4989 - 4994 10.1007/s12665-015-4344-4
• Siegfried, K., Hahn-Tomer, S., Koelsch, A., Osterwalder, E., Mattusch, J., Stärk, H.-J., Meichtry, M., De Seta, E.G., Reina, F.D., Panigatti, C., Litter, M.I., Harms, H. (2015):
  Introducing simple detection of bioavailable arsenic at Rafaela (Santa Fe Province, Argentina) using the ARSOlux biosensor
  Int. J. Environ. Res. Public Health 12 (5), 5465 - 5482 10.3390/ijerph120505465
• Simon, A., Bindschedler, S., Job, D., Wick, L.Y., Filippidou, S., Kooli, W.M., Verrecchia, E.P., Junier, P. (2015):
  Exploiting the fungal highway: development of a novel tool for the in situ isolation of bacteria migrating along fungal mycelium
  FEMS Microbiol. Ecol. 91 (11), fiv116 10.1093/femsec/fiv116
• Stasik, S., Wick, L.Y., Wendt-Potthoff, K. (2015):
  Anaerobic BTEX degradation in oil sands tailings ponds: impact of labile organic carbon and sulfate-reducing bacteria
  Chemosphere 138 , 133 - 139 10.1016/j.chemosphere.2015.05.068
• Steinbach, A., Schulz, S., Giebler, J., Schulz, S., Pronk, G.J., Kögel-Knabner, I., Harms, H., Wick, L.Y., Schloter, M. (2015):
  Clay minerals and metal oxides strongly influence the structure of alkane-degrading microbial communities during soil maturation
  ISME J. 9 (7), 1687 - 1691 10.1038/ismej.2014.243
• Wei, M., Harnisch, F., Vogt, C., Ahlheim, J., Neu, T.R., Richnow, H.H. (2015):
  Harvesting electricity from benzene and ammonium-contaminated groundwater using a microbial fuel cell with an aerated cathode
  RSC Advances 5 (7), 5321 - 5330 10.1039/c4ra12144a
• Wei, M., Rakoczy, J., Vogt, C., Harnisch, F., Schumann, R., Richnow, H.H. (2015):
  Enhancement and monitoring of pollutant removal in a constructed wetland by microbial electrochemical technology
  Bioresour. Technol. 196 , 490 - 499 10.1016/j.biortech.2015.07.111
• Weichler, M.-T., Kurteva-Yaneva, N., Przybylski, D., Schuster, J., Müller, R.H., Harms, H., Rohwerder, T. (2015):
  Thermophilic coenzyme B₁₂-dependent acyl-coenzyme A (CoA) mutase from Kyrpidia tusciae DSM 2912 preferentially catalyzes isomerization of (R)-3-hydroxybutyryl- and 2-hydroxyisobutyryl-CoA
  Appl. Environ. Microb. 81 (14), 4564 - 4572 10.1128/AEM.00716-15
• Witkowski, P.T., Kallies, R., Hoveka, J., Auste, B., Ithete, N.I., Šoltys, K., Szemes, T., Drosten, C., Preiser, W., Klempa, B., Mfune, J.K.E., Kruger, D.H. (2015):
  Novel arenavirus isolates from Namaqua rock mice, Namibia, Southern Africa
  Emerg. Infect. Dis. 21 (7), 1213 - 1216 10.3201/eid2107.141341
• Zimmermann, M., Escrig, S., Hübschmann, T., Kirf, M.K., Brand, A., Inglis, R.F., Musat, N., Müller, S., Meibom, A., Ackermann, M., Schreiber, F. (2015):
  Phenotypic heterogeneity in metabolic traits among single cells of a rare bacterial species in its natural environment quantified with a combination of flow cell sorting and NanoSIMS
  Front. Microbiol. 6 , art. 243 10.3389/fmicb.2015.00243

2014 (51)

• Banitz, T., Johst, K., Wick, L.Y., Schamfuß, S., Harms, H., Frank, K. (2014):
  Corrigendum: Highways versus pipelines: contributions of two fungal transport mechanisms to efficient bioremediation (vol 5, pg 211, 2013)
  Environ. Microbiol. Rep. 6 (4), 414 - 414 10.1111/1758-2229.12177
• Bosch, J., Lee, K.-Y., Hong, S.-F., Harnisch, F., Schröder, U., Meckenstock, R.U. (2014):
  Metabolic efficiency of Geobacter sulfurreducens growing on anodes with different redox potentials
  Curr. Microbiol. 68 (6), 763 - 768 10.1007/s00284-014-0539-2
• Bozinovski, D., Taubert, M., Kleinsteuber, S., Richnow, H.-H., von Bergen, M., Vogt, C., Seifert, J. (2014):
  Metaproteogenomic analysis of a sulfate-reducing enrichment culture reveals genomic organization of key enzymes in the m-xylene degradation pathway and metabolic activity of proteobacteria
  Syst. Appl. Microbiol. 37 (7), 488 - 501 10.1016/j.syapm.2014.07.005
• Brown, R.K., Harnisch, F., Wirth, S., Wahlandt, H., Dockhorn, T., Dichtl, N., Schröder, U. (2014):
  Evaluating the effects of scaling up on the performance of bioelectrochemical systems using a technical scale microbial electrolysis cell
  Bioresour. Technol. 163 , 206 - 213 10.1016/j.biortech.2014.04.044
• Bühligen, F., Lindner, P., Fetzer, I., Stahl, F., Scheper, T., Harms, H., Müller, S. (2014):
  Analysis of aging in lager brewing yeast during serial repitching
  J. Biotechnol. 187 , 60 - 70 10.1016/j.jbiotec.2014.07.002
• Cailleau, G., Mota, M., Bindschedler, S., Junier, P., Verrecchia, E.P. (2014):
  Detection of active oxalate–carbonate pathway ecosystems in the Amazon Basin: Global implications of a natural potential C sink
  Catena 116 , 132 - 141 10.1016/j.catena.2013.12.017
• Dorer, C., Vogt, C., Kleinsteuber, S., Stams, A.J.M., Richnow, H.-H. (2014):
  Compound-specific isotope analysis as a tool to characterize biodegradation of ethylbenzene
  Environ. Sci. Technol. 48 (16), 9122 - 9132 10.1021/es500282t
• Fester, T., Giebler, J., Wick, L.Y., Schlosser, D., Kästner, M. (2014):
  Plant–microbe interactions as drivers of ecosystem functions relevant for the biodegradation of organic contaminants
  Curr. Opin. Biotechnol. 27 , 168 - 175 10.1016/j.copbio.2014.01.017
• Fester, T., Merbach, I., Schulz, E., Härtig, C. (2014):
  Metabolic response of Medicago sativa to severe nutrient imbalances and disturbances under field conditions
  J. Plant Nutr. Soil Sci. 177 (2), 245 - 259 10.1002/jpln.201200551
• Gharasoo, M., Centler, F., Fetzer, I., Thullner, M. (2014):
  How the chemotactic characteristics of bacteria can determine their population patterns
  Soil Biol. Biochem. 69 , 346 - 358 /10.1016/j.soilbio.2013.11.019
• Giebler, J., Wick, L.Y., Harms, H., Chatzinotas, A. (2014):
  Evaluating T-RFLP protocols to sensitively analyze the genetic diversity and community changes of soil alkane degrading bacteria
  Eur. J. Soil Biol. 65 , 107 - 113 10.1016/j.ejsobi.2014.10.006
• Glaser, K., Kuppardt, A., Krohn, S., Heidtmann, A., Harms, H., Chatzinotas, A. (2014):
  Primer pairs for the specific environmental detection and T-RFLP analysis of the ubiquitous flagellate taxa Chrysophyceae and Kinetoplastea
  J. Microbiol. Methods 100 , 8 - 16 10.1016/j.mimet.2014.02.006
• Gros, J., Nabi, D., Würz, B., Wick, L.Y., Brussaard, C.P.D., Huisman, J., van der Meer, J.R., Reddy, C.M., Arey, J.S. (2014):
  First day of an oil spill on the open sea: Early mass transfers of hydrocarbons to air and water
  Environ. Sci. Technol. 48 (16), 9400 - 9411 10.1021/es502437e
• Harms, H., Junca, H. (2014):
  Editorial overview: Environmental Biotechnology
  Curr. Opin. Biotechnol. 27 , vii - ix 10.1016/j.copbio.2014.04.002
• Heße, F., Prykhodko, V., Attinger, S., Thullner, M. (2014):
  Corrigendum to “Assessment of the impact of pore-scale mass-transfer restrictions on microbially-induced stable-isotope fractionation” [ADWR 74C (2014) 79–90]
  Adv. Water Resour. 74 , 329 10.1016/j.advwatres.2014.09.010
• Heße, F., Prykhodko, V., Attinger, S., Thullner, M. (2014):
  Assessment of the impact of pore-scale mass-transfer restrictions on microbially-induced stable-isotope fractionation
  Adv. Water Resour. 74 , 79 - 90 10.1016/j.advwatres.2014.08.007
• Hoffmann, P., Held, C., Maskow, T., Sadowski, G. (2014):
  A thermodynamic investigation of the glucose-6-phosphate isomerization
  Biophys. Chem. 195 , 22 - 31 10.1016/j.bpc.2014.08.002
• Jahangiri, E., Reichelt, S., Thomas, I., Hausmann, K., Schlosser, D., Schulze, A. (2014):
  Electron beam-induced immobilization of laccase on porous supports for waste water treatment applications
  Molecules 19 (8), 11860 - 11882 10.3390/molecules190811860
• Jahn, M., Vorpahl, C., Türkowsky, D., Lindmeyer, M., Bühler, B., Harms, H., Müller, S. (2014):
  Accurate determination of plasmid copy number of flow-sorted cells using droplet digital PCR
  Anal. Chem. 86 (12), 5969 - 5976 10.1021/ac501118v
• Jahn, M., Vorpahl, C., Türkowsky, D., Lindmeyer, M., Bühler, B., Harms, H., Müller, S. (2014):
  Population heterogeneity in Pseudomonas putida analyzed on the single cell level using proteomics and digital PCR
  New Biotech. 31 (Suppl.), S58 - S59 10.1016/j.nbt.2014.05.1746
• Johnke, J., Cohen, Y., de Leeuw, M., Kushmaro, A., Jurkevitch, E., Chatzinotas, A. (2014):
  Multiple micro-predators controlling bacterial communities in the environment
  Curr. Opin. Biotechnol. 27 , 185 - 190 10.1016/j.copbio.2014.02.003
• Kallies, R., Kopp, A., Zirkel, F., Estrada, A., Gillespie, T.R., Drosten, C., Junglen, S. (2014):
  Genetic characterization of Goutanap virus, a novel virus related to Negeviruses, Cileviruses and Higreviruses
  Viruses 6 (11), 4346 - 4357 10.3390/v6114346
• Koch, C., Harms, H., Müller, S. (2014):
  Dynamics in the microbial cytome — single cell analytics in natural systems
  Curr. Opin. Biotechnol. 27 , 134 - 141 10.1016/j.copbio.2014.01.011
• Koch, C., Harnisch, F., Schröder, U., Müller, S. (2014):
  Cytometric fingerprints: evaluation of new tools for analyzing microbial community dynamics
  Front. Microbiol. 5 , art. 273 10.3389/fmicb.2014.00273
• Koch, C., Müller, S., Harms, H., Harnisch, F. (2014):
  Microbiomes in bioenergy production: From analysis to management
  Curr. Opin. Biotechnol. 27 , 65 - 72 10.1016/j.copbio.2013.11.006
• Koch, C., Popiel, D., Harnisch, F. (2014):
  Functional redundancy of microbial anodes fed by domestic wastewater
  ChemElectroChem 1 (11), 1923 - 1931 10.1002/celc.201402216
• Krohn, S., Böhm, S., Engelmann, C., Hartmann, J., Brodzinski, A., Chatzinotas, A., Zeller, K., Prywerek, D., Fetzer, I., Berg, A. (2014):
  Application of qualitative and quantitative real-time PCR, direct sequencing, and terminal restriction fragment length polymorphism analysis for detection and identification of polymicrobial 16S rRNA genes in ascites
  J. Clin. Microbiol. 52 (5), 1754 - 1757 10.1128/JCM.00552-14
• Kuppardt, A., Kleinsteuber, S., Vogt, C., Lüders, T., Harms, H., Chatzinotas, A. (2014):
  Phylogenetic and functional diversity within toluene-degrading, sulphate-reducing consortia enriched from a contaminated aquifer
  Microb. Ecol. 68 (2), 222 - 234 10.1007/s00248-014-0403-8
• Lauterböck, B., Nikolausz, M., Lv, Z., Baumgartner, A., Liebhard, G., Fuchs, W. (2014):
  Improvement of anaerobic digestion performance by continuous nitrogen removal with a membrane contactor treating a substrate rich in ammonia and sulfide
  Bioresour. Technol. 158 , 209 - 216 10.1016/j.biortech.2014.02.012
• Lentendu, G., Wubet, T., Chatzinotas, A., Wilhelm, C., Buscot, F., Schlegel, M. (2014):
  Effects of long term differential fertilization on eukaryotic microbial communities in an arable soil: a multiple barcoding approach
  Mol. Ecol. 23 (13), 3341 - 3355 10.1111/mec.12819
• Lieder, S., Jahn, M., Seifert, J., von Bergen, M., Müller, S., Takors, R. (2014):
  Subpopulation-proteomics reveal growth rate, but not cell cycling, as a major impact on protein composition in Pseudomonas putida KT2440
  AMB Express 4 , art. 71 10.1186/s13568-014-0071-6
• Lv, Z., Hu, M., Harms, H., Richnow, H.H., Liebetrau, J., Nikolausz, M. (2014):
  Stable isotope composition of biogas allows early warning of complete process failure as a result of ammonia inhibition in anaerobic digesters
  Bioresour. Technol. 167 , 251 - 259 10.1016/j.biortech.2014.06.029
• Lv, Z., Leite, A.F., Harms, H., Richnow, H.H., Liebetrau, J., Nikolausz, M. (2014):
  Influences of the substrate feeding regime on methanogenic activity in biogas reactors approached by molecular and stable isotope methods
  Anaerobe 29 , 91 - 99 10.1016/j.anaerobe.2013.11.005
• Maskow, T., Morais, F.M., Rosa, L.F.M., Qian, Y.G., Harnisch, F. (2014):
  Insufficient oxygen diffusion leads to distortions of microbial growth parameters assessed by isothermal microcalorimetry
  RSC Advances 4 (62), 32730 - 32737 10.1039/c4ra03921a
• Morais, F.M., Buchholz, F., Hartmann, T., Lerchner, J., Neu, T.R., Kiesel, B., Harms, H., Maskow, T. (2014):
  Chip-calorimetric monitoring of biofilm eradication with bacteriophages reveals an unexpected infection-related heat profile
  J. Therm. Anal. Calorim. 115 (3), 2203 - 2210 10.1007/s10973-013-3494-4
• Otto, B., Schlosser, D. (2014):
  First laccase in green algae: purification and characterization of an extracellular phenol oxidase from Tetracystis aeria
  Planta 240 (6), 1225 - 1236 10.1007/s00425-014-2144-9
• Porsch, K., Rijal, M.L., Borch, T., Troyer, L.D., Behrens, S., Wehland, F., Appel, E., Kappler, A. (2014):
  Impact of organic carbon and iron bioavailability on the magnetic susceptibility of soils
  Geochim. Cosmochim. Acta 128 , 44 - 57 10.1016/j.gca.2013.12.001
• Poser, A., Vogt, C., Knöller, K., Ahlheim, J., Weiss, H., Kleinsteuber, S., Richnow, H.-H. (2014):
  Stable sulfur and oxygen isotope fractionation of anoxic sulfide oxidation by two different enzymatic pathways
  Environ. Sci. Technol. 48 (16), 9094 - 9102 10.1021/es404808r
• Pous, N., Koch, C., Colprim, J., Puig, S., Harnisch, F. (2014):
  Extracellular electron transfer of biocathodes: Revealing the potentials for nitrate and nitrite reduction of denitrifying microbiomes dominated by Thiobacillus sp.
  Electrochem. Commun. 49 , 93 - 97 10.1016/j.elecom.2014.10.011
• Pradhan, A., Seena, S., Dobritzsch, D., Helm, S., Gerth, K., Dobritzsch, M., Krauss, G.-J., Schlosser, D., Pascoal, C., Cássio, F. (2014):
  Physiological responses to nanoCuO in fungi from non-polluted and metal-polluted streams
  Sci. Total Environ. 466–467 , 556 - 563 10.1016/j.scitotenv.2013.07.073
• Salthammer, T., Harnisch, F. (2014):
  Die Chemie bei Breaking Bad: Entstehung einer Publikation und ihre Resonanz
  Chem. unserer Zeit 48 (4), 242 - 243 10.1002/ciuz.201490043
• Schamfuß, S., Neu, T.R., Harms, H., Wick, L.Y. (2014):
  A whole cell bioreporter approach to assess transport and bioavailability of organic contaminants in water unsaturated systems
  J. Vis. Exp. 2014 (94), e52334 10.3791/52334
• Schmidt, T., Ziganshin, A.M., Nikolausz, M., Scholwin, F., Nelles, M., Kleinsteuber, S., Pröter, J. (2014):
  Effects of the reduction of the hydraulic retention time to 1.5 days at constant organic loading in CSTR, ASBR, and fixed-bed reactors - Performance and methanogenic community composition
  Biomass Bioenerg. 69 , 241 - 248 10.1016/j.biombioe.2014.07.021
• Shamim, S., Rehman, A. (2014):
  Physicochemical surface properties of Cupriavidus metallidurans CH34 and Pseudomonas putida mt2 under cadmium stress
  J. Basic Microbiol. 54 (4), 306 - 314 10.1002/jobm.201200434
• Shamim, S., Rehman, A., Qazi, M.H. (2014):
  Swimming, swarming, twitching, and chemotactic responses of Cupriavidus metallidurans CH34 and Pseudomonas putida mt2 in the presence of cadmium
  Arch. Environ. Contam. Toxicol 66 (3), 407 - 414 10.1007/s00244-013-9966-5
• Shamim, S., Rehman, A., Qazi, M.H. (2014):
  Cadmium-resistance mechanism in the bacteria Cupriavidus metallidurans CH34 and Pseudomonas putida mt2
  Arch. Environ. Contam. Toxicol 67 (2), 149 - 157 10.1007/s00244-014-0009-7
• Singh, S., Harms, H., Schlosser, D. (2014):
  Screening of ecologically diverse fungi for their potential to pretreat lignocellulosic bioenergy feedstock
  Appl. Microbiol. Biotechnol. 98 (7), 3355 - 3370 10.1007/s00253-014-5563-4
• Wentrup, C., Wendeberg, A., Schimak, M., Borowski, C., Dubilier, N. (2014):
  Forever competent: deep-sea bivalves are colonized by their chemosynthetic symbionts throughout their lifetime
  Environ. Microbiol. 16 (12), 3699 - 3713 10.1111/1462-2920.12597
• Wetzel, K., Silva, G., Matczinski, U., Oehl, F., Fester, T. (2014):
  Superior differentiation of arbuscular mycorrhizal fungal communities from till and no-till plots by morphological spore identification when compared to T-RFLP
  Soil Biol. Biochem. 72 , 88 - 96 10.1016/j.soilbio.2014.01.033
• Yoon, H., Leibeling, S., Zhang, C., Müller, R.H., Werth, C.J., Zilles, J.L. (2014):
  Adaptation of Delftia acidovorans for degradation of 2,4-dichlorophenoxyacetate in a microfluidic porous medium
  Biodegradation 25 (4), 595 - 604 10.1007/s10532-014-9684-3
• Zhang, N., Bashir, S., Qin, J., Schindelka, J., Fischer, A., Nijenhuis, I., Herrmann, H., Wick, L.Y., Richnow, H.H. (2014):
  Compound specific stable isotope analysis (CSIA) to characterize transformation mechanisms of α-hexachlorocyclohexane
  J. Hazard. Mater. 280 , 750 - 757 10.1016/j.jhazmat.2014.08.046

2013 (54)

• Allan, E., Bossdorf, O., Dormann, C.F., Prati, D., Gossner, M.M., Tscharntke, T., Blüthgen, N., Bellach, M., Birkhofer, K., Boch, S., Böhm, S., Börschig, C., Chatzinotas, A., Christ, S., Daniel, R., Diekötter, T., Fischer, C., Friedl, T., Glaser, K., Hallmann, C., Hodac, L., Hölzel, N., Jung, K., Klein, A.M., Klaus, V.H., Kleinebecker, T., Krauss, J., Lange, M., Morris, E.K., Müller, J., Nacke, H., Pašalić, E., Rillig, M.C., Rothenwöhrer, C., Schall, P., Scherber, C., Schulze, W., Socher, S.A., Steckel, J., Steffan-Dewenter, I., Türke, M., Weiner, C.N., Werner, M., Westphal, C., Wolters, V., Wubet, T., Gockel, S., Gorke, M., Hemp, A., Renner, S.C., Schöning, I., Pfeiffer, S., König-Ries, B., Buscot, F., Linsenmair, K.E., Schulze, E.-D., Weisser, W.W., Fischer, M. (2013):
  Interannual variation in land-use intensity enhances grassland multidiversity
  Proc. Natl. Acad. Sci. U.S.A. 111 (1), 308 - 313 10.1073/pnas.1312213111
• Banitz, T., Johst, K., Wick, L.Y., Schamfuß, S., Harms, H., Frank, K. (2013):
  Highways versus pipelines: contributions of two fungal transport mechanisms to efficient bioremediation
  Environ. Microbiol. Rep. 5 (2), 211 - 218 10.1111/1758-2229.12002
• Beketov, M.A., Cedergreen, N., Wick, L.Y., Kattwinkel, M., Duquesne, S., Liess, M. (2013):
  Sediment toxicity testing for prospective risk assessment - a new framework and how to establish it
  Hum. Ecol. Risk Assess. 19 (1), 98 - 117 10.1080/10807039.2012.683741
• Bravo, D., Cailleau, G., Bindschedler, S., Simon, A., Job, D., Verrecchia, E., Junier, P. (2013):
  Isolation of oxalotrophic bacteria able to disperse on fungal mycelium
  FEMS Microbiol. Lett. 348 (2), 157 - 166 10.1111/1574-6968.12287
• Bühligen, F., Rüdinger, P., Fetzer, I., Stahl, F., Scheper, T., Harms, H., Müller, S. (2013):
  Sustainability of industrial yeast serial repitching practice studied by gene expression and correlation analysis
  J. Biotechnol. 168 (4), 718 - 728 10.1016/j.jbiotec.2013.09.008
• Carmona-Martínez, A.A., Harnisch, F., Kuhlicke, U., Neu, T.R., Schröder, U. (2013):
  Electron transfer and biofilm formation of Shewanella putrefaciens as function of anode potential
  Bioelectrochemistry 93 , 23 - 29 10.1016/j.bioelechem.2012.05.002
• Centler, F., Heße, F., Thullner, M. (2013):
  Estimating pathway-specific contributions to biodegradation in aquifers based on dual isotope analysis: theoretical analysis and reactive transport simulations
  J. Contam. Hydrol. 152 , 97 - 116 10.1016/j.jconhyd.2013.06.009
• Chatzinotas, A., Schellenberger, S., Glaser, K., Kolb, S. (2013):
  Assimilation of cellulose-derived carbon by microeukaryotes in oxic and anoxic slurries of an aerated soil
  Appl. Environ. Microb. 79 (18), 5777 - 5781 10.1128/AEM.01598-13
• De Biase, C., Carminati, A., Oswald, S.E., Thullner, M. (2013):
  Numerical modeling analysis of VOC removal processes in different aerobic vertical flow systems for groundwater remediation
  J. Contam. Hydrol. 154 , 53 - 69 10.1016/j.jconhyd.2013.07.007
• Dennis, P.G., Harnisch, F., Yeoh, Y.K., Tyson, G.W., Rabaey, K. (2013):
  Dynamics of cathode-associated microbial communities and metabolite profiles in a glycerol-fed bioelectrochemical system
  Appl. Environ. Microb. 79 (13), 4008 - 4014 10.1128/AEM.00569-13
• Engelmann, C., Prywerek, D., Krohn, S., Boehlig, A., Herber, A., Chatzinotas, A., Fetzer, I., Boehm, S., Berg, T. (2013):
  Bacterial DNA detection in ascites fluid in cirrhotic patients: molecular characterisation and clinical impact
  Hepatology 58 (S1), 866A 10.1002/hep.26866
• Fester, T. (2013):
  Arbuscular mycorrhizal fungi in a wetland constructed for benzene-, methyl tert-butyl ether- and ammonia-contaminated groundwater bioremediation
  Microb. Biotechnol. 6 (1), 80 - 84 10.1111/j.1751-7915.2012.00357.x
• Fester, T., Fetzer, I., Härtig, C. (2013):
  A core set of metabolite sink/source ratios indicative for plant organ productivity in Lotus japonicus
  Planta 237 (1), 145 - 160 10.1007/s00425-012-1759-y
• Giebler, J., Wick, L.Y., Chatzinotas, A., Harms, H. (2013):
  Alkane-degrading bacteria at the soil–litter interface: comparing isolates with T-RFLP-based community profiles
  FEMS Microbiol. Ecol. 86 (1), 45 - 58 10.1111/1574-6941.12097
• Giebler, J., Wick, L.Y., Schloter, M., Harms, H., Chatzinotas, A. (2013):
  Evaluating the assignment of alkB terminal restriction fragments and sequence types to distinct bacterial taxa
  Appl. Environ. Microb. 79 (9), 3129 - 3132 10.1128/AEM.04028-12
• Gimkiewicz, C., Harnisch, F. (2013):
  Waste water derived electroactive microbial biofilms: growth, maintenance, and basic characterization
  J. Vis. Exp. 2013 (82), e50800 10.3791/50800
• Harnisch, F., Blei, I., dos Santos, T.R., Möller, M., Nilges, P., Eilts, P., Schröder, U. (2013):
  From the test-tube to the test-engine: assessing the suitability of prospective liquid biofuel compounds
  RSC Advances 3 (25), 9594 - 9605 10.1039/c3ra40354h
• Harnisch, F., Salthammer, T. (2013):
  Die Chemie bei Breaking Bad: ein Chemiker als Serienprotagonist. Chemistry in Breaking Bad: a chemist starring a series
  Chem. unserer Zeit 47 (4), 214 - 221 10.1002/ciuz.201300612
• Hartmann, T., Mühling, M., Wolf, A., Mariana, F., Maskow, T., Mertens, F., Neu, T.R., Lerchner, J. (2013):
  A chip-calorimetric approach to the analysis of Ag nanoparticle caused inhibition and inactivation of beads-grown bacterial biofilms
  J. Microbiol. Methods 95 (2), 129 - 137 10.1016/j.mimet.2013.08.003
• Jahn, M., Mölle, A., Rödel, G., Ostermann, K. (2013):
  Temporal and spatial properties of a yeast multi-cellular amplification system based on signal molecule diffusion
  Sensors 13 (11), 14511 - 14522 10.3390/s131114511
• Jahn, M., Seifert, J., von Bergen, M., Schmid, A., Bühler, B., Müller, S. (2013):
  Subpopulation-proteomics in prokaryotic populations
  Curr. Opin. Biotechnol. 24 (1), 79 - 87 10.1016/j.copbio.2012.10.017
• Koch, C., Fetzer, I., Harms, H., Müller, S. (2013):
  CHIC—an automated approach for the detection of dynamic variations in complex microbial communities
  Cytom. Part A 83 (6), 561 - 567 10.1002/cyto.a.22286
• Koch, C., Fetzer, I., Schmidt, T., Harms, H., Müller, S. (2013):
  Monitoring functions in managed microbial systems by cytometric bar coding
  Environ. Sci. Technol. 47 (3), 1753 - 1760 10.1021/es3041048
• Koch, C., Günther, S., Desta, A.F., Hübschmann, T., Müller, S. (2013):
  Cytometric fingerprinting for analyzing microbial intracommunity structure variation and identifying subcommunity function
  Nat. Protoc. 8 (1), 190 - 202 10.1038/nprot.2012.149
• Kruger, M.C., Bertin, P.N., Heipieper, H.J., Arsène-Ploetze, F. (2013):
  Bacterial metabolism of environmental arsenic—mechanisms and biotechnological applications
  Appl. Microbiol. Biotechnol. 97 (9), 3827 - 3841 10.1007/s00253-013-4838-5
• Leibeling, S., Maeß, M.B., Centler, F., Kleinsteuber, S., von Bergen, M., Thullner, M., Harms, H., Müller, R.H. (2013):
  Posttranslational oxidative modification of (R)-2-(2,4-dichlorophenoxy)propionate/α-ketoglutarate-dependent dioxygenases (RdpA) leads to improved degradation of 2,4-dichlorophenoxyacetate (2,4-D)
  Eng. Life Sci. 13 (3), 278 - 291 10.1002/elsc.201100093
• Lentendu, G., Hübschmann, T., Müller, S., Dunker, S., Buscot, F., Wilhelm, C. (2013):
  Recovery of soil unicellular eukaryotes: an efficiency and activity analysis on the single cell level
  J. Microbiol. Methods 95 (3), 463 - 469 10.1016/j.mimet.2013.05.006
• Mariana, F., Buchholz, F., Lerchner, J., Neu, T.R., Harms, H., Maskow, T. (2013):
  Chip-calorimetric monitoring of biofilm eradication with antibiotics provides mechanistic information
  Int. J. Med. Microbiol. 303 (3), 158 - 165 10.1016/j.ijmm.2012.12.009
• Maskow, T. (2013):
  Calorimetry and biothermodynamics for biotechnology, medicine and environmental sciences: current status and advances
  Eng. Life Sci. 13 (6), 508 - 509 10.1002/elsc.201370064
• Mehlig, L., Petzold, M., Heder, C., Günther, S., Müller, S., Eschenhagen, M., Röske, I., Röske, K. (2013):
  Biodiversity of polyphosphate accumulating bacteria in eight WWTPs with different modes of operation
  J. Environ. Eng.-ASCE 139 (8), 1089 - 1098 10.1061/(ASCE)EE.1943-7870.0000711
• Möller, M., Harnisch, F., Schröder, U. (2013):
  Hydrothermal liquefaction of cellulose in subcritical water—the role of crystallinity on the cellulose reactivity
  RSC Advances 3 (27), 11035 - 11044 10.1039/c3ra41582a
• Müller, S., Hiller, K. (2013):
  From multi-omics to basic structures of biological systems
  Curr. Opin. Biotechnol. 24 (1), 1 - 3 10.1016/j.copbio.2012.12.002
• Naether, D., Slawtschew, S., Stasik, S., Engel, M., Olzog, M., Wick, L.Y., Timmis, K.N., Heipieper, H.J. (2013):
  Adaptation of hydrocarbonoclastic Alcanivorax borkumensis SK2 to alkanes and toxic organic compounds - a physiological and transcriptomic approach
  Appl. Environ. Microb. 79 (14), 4282 - 4293 10.1128/AEM.00694-13
• Neumeyer, A., Hübschmann, T., Müller, S., Frunzke, J. (2013):
  Monitoring of population dynamics of Corynebacterium glutamicum by multiparameter flow cytometry
  Microb. Biotechnol. 6 (2), 157 - 167 10.1111/1751-7915.12018
• Nick, H.M., Raoof, A., Centler, F., Thullner, M., Regnier, P. (2013):
  Reactive dispersive contaminant transport in coastal aquifers: Numerical simulation of a reactive Henry problem
  J. Contam. Hydrol. 145 , 90 - 104 10.1016/j.jconhyd.2012.12.005
• Nikolausz, M., Walter, R.F.H., Sträuber, H., Liebetrau, J., Schmidt, T., Kleinsteuber, S., Bratfisch, F., Günther, U., Richnow, H.H. (2013):
  Evaluation of stable isotope fingerprinting techniques for the assessment of the predominant methanogenic pathways in anaerobic digesters
  Appl. Microbiol. Biotechnol. 97 (5), 2251 - 2262 10.1007/s00253-012-4657-0
• Paufler, S., Weichler, M.-T., Harms, H., Maskow, T. (2013):
  Simple improvement of the sensitivity of a heat flux reaction calorimeter to monitor bioprocesses with weak heat production
  Thermochim. Acta 569 , 71 - 77 10.1016/j.tca.2013.07.001
• Perner, M., Petersen, J.M., Zielinski, F., Gennerich, H.H., Seifert, R. (2013):
  Geochemical constraints on the diversity and activity of H2-oxidizing microorganisms in diffuse hydrothermal fluids from a basalt- and an ultramafic-hosted vent
  FEMS Microbiol. Ecol. 85 (1), 210 - 210 10.1111/1574-6941.12147
• Pion, M., Bshary, R., Bindschedler, S., Filippidou, S., Wick, L.Y., Job, D., Junier, P. (2013):
  Gains of bacterial flagellar motility in a fungal world
  Appl. Environ. Microb. 79 (22), 6862 - 6867 10.1128/AEM.01393-13
• Pion, M., Spangenberg, J.E., Simon, A., Bindschedler, S., Flury, C., Chatelain, A., Bshary, R., Job, D., Junier, P. (2013):
  Bacterial farming by the fungus Morchella crassipes
  Proc. R. Soc. B-Biol. Sci. 280 (1773), art. 20132242 10.1098/rspb.2013.2242
• Przybylski, D., Rohwerder, T., Harms, H., Yaneva, N., Müller, R.H. (2013):
  Synthesis of the building block 2-hydroxyisobutyrate from fructose and butyrate by Cupriavidus necator H16
  Appl. Microbiol. Biotechnol. 97 (20), 8875 - 8885 10.1007/s00253-013-5064-x
• Regestein, L., Maskow, T., Tack, A., Knabben, I., Wunderlich, M., Lerchner, J., Büchs, J. (2013):
  Non-invasive online detection of microbial lysine formation in stirred tank bioreactors by using calorespirometry
  Biotechnol. Bioeng. 110 (5), 1386 - 1395 10.1002/bit.24815
• Regnier, P., Friedlingstein, P., Ciais, P., Mackenzie, F.T., Gruber, N., Janssens, I.A., Laruelle, G.G., Lauerwald, R., Luyssaert, S., Andersson, A.J., Arndt, S., Arnosti, C., Borges, A.V., Dale, A.W., Gallego-Sala, A., Goddéris, Y., Goossens, N., Hartmann, J., Heinze, C., Ilyina, T., Joos, F., LaRowe, D.E., Leifeld, J., Meysman, F.J.R., Munhoven, G., Raymond, P.A., Spahni, R., Suntharalingam, P., Thullner, M. (2013):
  Anthropogenic perturbation of the carbon fluxes from land to ocean
  Nat. Geosci. 6 (8), 597 - 606 10.1038/ngeo1830
• Ricken, B., Corvini, P.F.X., Cichocka, D., Parisi, M., Lenz, M., Wyss, D., Martínez-Lavanchy, P.M., Müller, J.A., Shahgaldian, P., Tulli, L.G., Kohler, H.-P.E., Kolvenbach, B.A. (2013):
  ipso-hydroxylation and subsequent fragmentation: a novel microbial strategy to eliminate sulfonamide antibiotics
  Appl. Environ. Microb. 79 (18), 5550 - 5558 10.1128/AEM.00911-13
• Rohwerder, T., Müller, R.H., Weichler, M.T., Schuster, J., Hübschmann, T., Müller, S., Harms, H. (2013):
  Cultivation of Aquincola tertiaricarbonis L108 on the fuel oxygenate intermediate tert-butyl alcohol induces aerobic anoxygenic photosynthesis at extremely low feeding rates
  Microbiology-(UK) 159 (10), 2180 - 2190 10.1099/mic.0.068957-0
• Saleem, M., Fetzer, I., Harms, H., Chatzinotas, A. (2013):
  Diversity of protists and bacteria determines predation performance and stability
  ISME J. 7 (10), 1912 - 1921 10.1038/ismej.2013.95
• Schamfuß, S., Neu, T.R., van der Meer, J.R., Tecon, R., Harms, H., Wick, L.Y. (2013):
  Impact of mycelia on the accessibility of fluorene to PAH-degrading bacteria
  Environ. Sci. Technol. 47 (13), 6908 - 6915 10.1021/es304378d
• Schuster, J., Purswani, J., Breuer, U., Pozo, C., Harms, H., Müller, R.H., Rohwerder, T. (2013):
  Constitutive expression of the cytochrome P450 EthABCD monooxygenase system enables degradation of synthetic dialkyl ethers in aquincola tertiaricarbonis L108
  Appl. Environ. Microb. 79 (7), 2321 - 2327 10.1128/AEM.03348-12
• Thullner, M., Fischer, A., Richnow, H.-H., Wick, L.Y. (2013):
  Influence of mass transfer on stable isotope fractionation
  Appl. Microbiol. Biotechnol. 97 (2), 441 - 452 10.1007/s00253-012-4537-7
• Tischer, K., Kleinsteuber, S., Schleinitz, K.M., Fetzer, I., Spott, O., Stange, F., Lohse, U., Franz, J., Neumann, F., Gerling, S., Schmidt, C., Hasselwander, E., Harms, H., Wendeberg, A. (2013):
  Microbial communities along biogeochemical gradients in a hydrocarbon-contaminated aquifer
  Environ. Microbiol. 15 (9), 2603 - 2615 10.1111/1462-2920.12168
• Vogel, A., Fester, T., Eisenhauer, N., Scherer-Lorenzen, M., Schmid, B., Weisser, W.W., Weigelt, A. (2013):
  Separating drought effects from roof artifacts on ecosystem processes in a grassland drought experiment
  PLOS One 8 (8), e70997 10.1371/journal.pone.0070997
• Wagner, A., Segler, L., Kleinsteuber, S., Sawers, G., Smidt, H., Lechner, U. (2013):
  Regulation of reductive dehalogenase gene transcription in Dehalococcoides mccartyi
  Philos. Trans. R. Soc. B-Biol. Sci. 368 (1616), art. 20120317 10.1098/rstb.2012.0317
• Wentrup, C., Wendeberg, A., Huang, J.Y., Borowski, C., Dubilier, N. (2013):
  Shift from widespread symbiont infection of host tissues to specific colonization of gills in juvenile deep-sea mussels
  ISME J. 7 (6), 1244 - 1247 10.1038/ismej.2013.5
• Ziganshin, A.M., Liebetrau, J., Pröter, J., Kleinsteuber, S. (2013):
  Microbial community structure and dynamics during anaerobic digestion of various agricultural waste materials
  Appl. Microbiol. Biotechnol. 97 (11), 5161 - 5174 10.1007/s00253-013-4867-0

2012 (38)

• Banitz, T., Johst, K., Wick, L.Y., Fetzer, I., Harms, H., Frank, K. (2012):
  The relevance of conditional dispersal for bacterial colony growth and biodegradation
  Microb. Ecol. 63 (2), 339 - 347 10.1007/s00248-011-9927-3
• Baumgarten, T., Sperling, S., Seifert, J., von Bergen, M., Steiniger, F., Wick, L.Y., Heipieper, H.J. (2012):
  Membrane vesicle formation as a multiple-stress response mechanism enhances Pseudomonas putida DOT-T1E cell surface hydrophobicity and biofilm formation
  Appl. Environ. Microb. 78 (17), 6217 - 6224 10.1128/AEM.01525-12
• Baumgarten, T., Vazquez, J.R., Bastisch, C., Veron, W., Feuilloley, M.G.J., Nietzsche, S., Wick, L.Y., Heipieper, H.J. (2012):
  Alkanols and chlorophenols cause different physiological adaptive responses on the level of cell surface properties and membrane vesicle formation in Pseudomonas putida DOT-T1E
  Appl. Microbiol. Biotechnol. 93 (2), 837 - 845 10.1007/s00253-011-3442-9
• Buchholz, F., Lerchner, J., Mariana, F., Kuhlicke, U., Neu, T.R., Harms, H., Maskow, T. (2012):
  Chip-calorimetry provides real time insights into the inactivation of biofilms by predatory bacteria
  Biofouling 28 (3), 351 - 362 10.1080/08927014.2012.673593
• Czekalski, N., Berthold, T., Caucci, S., Egli, A., Bürgmann, H. (2012):
  Increased levels of multiresistant bacteria and resistance genes after wastewater treatment and their dissemination into Lake Geneva, Switzerland
  Front. Microbiol. 3 , art. 106 10.3389/fmicb.2012.00106
• De Biase, C., Maier, U., Baeder-Bederski, O., Bayer, P., Oswald, S., Thullner, M. (2012):
  Removal of volatile organic compounds in vertical flow filters: predictions from reactive transport modeling
  Ground Water Monit. Remediat. 32 (2), 106 - 121 10.1111/j.1745-6592.2011.01374.x
• Donose, B.C., Harnisch, F., Taran, E. (2012):
  Electrochemically produced hydrogen bubbleprobes for gas evolution kinetics and force spectroscopy
  Electrochem. Commun. 24 , 21 - 24 10.1016/j.elecom.2012.08.009
• Flach, K., Hilbrich, I., Schiffmann, A., Gärtner, U., Krüger, M., Leonhardt, M., Waschipky, H., Wick, L., Arendt, T., Holzer, M. (2012):
  Tau oligomers impair artificial membrane integrity and cellular viability
  J. Biol. Chem. 287 (52), 43223 - 43233 10.1074/jbc.M112.396176
• Furuno, S., Foss, S., Wild, E., Jones, K.C., Semple, K.T., Harms, H., Wick, L.Y. (2012):
  Mycelia promote active transport and spatial dispersion of polycyclic aromatic hydrocarbons
  Environ. Sci. Technol. 46 (10), 5463 - 5470 10.1021/es300810b
• Furuno, S., Remer, R., Chatzinotas, A., Harms, H., Wick, L.Y. (2012):
  Use of mycelia as paths for the isolation of contaminant-degrading bacteria from soil
  Microb. Biotechnol. 5 (1), 142 - 148 10.1111/j.1751-7915.2011.00309.x
• Gharasoo, M., Centler, F., Regnier, P., Harms, H., Thullner, M. (2012):
  A reactive transport modeling approach to simulate biogeochemical processes in pore structures with pore-scale heterogeneities
  Environ. Modell. Softw. 30 (1), 102 - 114 10.1016/j.envsoft.2011.10.010
• Günther, S., Koch, C., Hübschmann, T., Röske, I., Müller, R., Bley, T., Harms, H., Müller, S. (2012):
  Correlation of community dynamics and process parameters as a tool for the prediction of the stability of wastewater treatment
  Environ. Sci. Technol. 46 (1), 84 - 92 10.1021/es2010682
• Hanzel, J., Thullner, M., Harms, H., Wick, L.Y. (2012):
  Walking the tightrope of bioavailability: growth dynamics of PAH degraders on vapour-phase PAH
  Microb. Biotechnol. 5 (1), 79 - 86 10.1111/j.1751-7915.2011.00300.x
• Hommes, G., Gasser, C.A., Howald, C.B.C., Goers, R., Schlosser, D., Shahgaldian, P., Corvini, P.F.-X. (2012):
  Production of a robust nanobiocatalyst for municipal wastewater treatment
  Bioresour. Technol. 115 (July 2012), 8 - 15 10.1016/j.biortech.2011.11.129
• Jimenez-Sanchez, C., Wick, L.Y., Ortega-Calvo, J.-J. (2012):
  Chemical effectors cause different motile behavior and deposition of bacteria in porous media
  Environ. Sci. Technol. 46 (12), 6790 - 6797 10.1021/es300642n
• Junghanns, C., Neumann, J.F., Schlosser, D. (2012):
  Application of the aquatic fungus Phoma sp. (DSM22425) in bioreactors for the treatment of textile dye model effluents
  J. Chem. Technol. Biotechnol. 87 (9), 1276 - 1283 10.1002/jctb.3797
• Kalbacher, T., Delfs, J.-O., Shao, H., Wang, W., Walther, M., Samaniego, L., Schneider, C., Kumar, R., Musolff, A., Centler, F., Sun, F., Hildebrandt, A., Liedl, R., Borchardt, D., Krebs, P., Kolditz, O. (2012):
  The IWAS-ToolBox: software coupling for an integrated water resources management
  Environ. Earth Sci. 65 (5), 1367 - 1380 10.1007/s12665-011-1270-y
• Kleinsteuber, S., Schleinitz, K.M., Vogt, C. (2012):
  Key players and team play: anaerobic microbial communities in hydrocarbon-contaminated aquifers
  Appl. Microbiol. Biotechnol. 94 (4), 851 - 873 10.1007/s00253-012-4025-0
• Krohn, S., Hartmann, J., Brodzinski, A., Chatzinotas, A., Böhm, S., Berg, T. (2012):
  Identification of polybacterial 16S RRNA genes from ascitic fluids with T-RFLP analysis and direct sequencing
  J. Hepatol. 56 (Suppl. 2), S266 - S266 10.1016/S0168-8278(12)60685-0
• Libardi jr., N., Gern, R.M.M., Furlan, S.A., Schlosser, D. (2012):
  Laccase production by the aquatic ascomycete Phoma sp. UHH 5-1-03 and the white rot basidiomycete Pleurotus ostreatus DSM 1833 during submerged cultivation on banana peels and enzyme applicability for the removal of endocrine-disrupting chemicals
  Appl. Biochem. Biotechnol. 167 (5), 1144 - 1156 10.1007/s12010-012-9601-3
• Maskow, T., Wolf, K., Kunze, W., Enders, S., Harms, H. (2012):
  Rapid analysis of bacterial contamination of tap water using isothermal calorimetry
  Thermochim. Acta 543 , 273 - 280 10.1016/j.tca.2012.06.002
• Müller, S., Hübschmann, T., Kleinsteuber, S., Vogt, C. (2012):
  High resolution single cell analytics to follow microbial community dynamics in anaerobic ecosystems
  Methods 57 (3), 338 - 349 10.1016/j.ymeth.2012.04.001
• Regestein, L., Wolf, A., Schneider, H.-J., Maskow, T., Mertens, F., Büchs, J., Lerchner, J. (2012):
  A chip calorimeter for the monitoring of conventional bioreactors at elevated cell concentrations
  Thermochim. Acta 544 , 10 - 16 10.1016/j.tca.2012.06.004
• Reinhold, A., Westermann, M., Seifert, J., von Bergen, M., Schubert, T., Diekert, G. (2012):
  Impact of vitamin B₁₂ on the formation of the tetrachloroethene reductive dehalogenase in Desulfitobacterium hafniense strain Y51
  Appl. Environ. Microb. 78 (22), 8025 - 8032 10.1128/AEM.02173-12
• Rosell, M., Gonzalez-Olmos, R., Rohwerder, T., Rusevova, K., Georgi, A., Kopinke, F.-D., Richnow, H.H. (2012):
  Critical evaluation of the 2D-CSIA scheme for distinguishing fuel oxygenate degradation reaction mechanisms
  Environ. Sci. Technol. 46 (9), 4757 - 4766 10.1021/es2036543
• Saleem, M., Fetzer, I., Dormann, C.F., Harms, H., Chatzinotas, A. (2012):
  Predator richness increases the effect of prey diversity on prey yield
  Nat. Commun. 3 , art. 1305 10.1038/ncomms2287
• Schäfer, F., Schuster, J., Würz, B., Härtig, C., Harms, H., Müller, R.H., Rohwerder, T. (2012):
  Synthesis of short-chain diols and unsaturated alcohols from secondary alcohol substrates by the Rieske nonheme mononuclear iron oxygenase MdpJ
  Appl. Environ. Microb. 78 (17), 6280 - 6284 10.1128/AEM.01434-12
• Schulz, S., Giebler, J., Chatzinotas, A., Wick, L.Y., Fetzer, I., Welzl, G., Harms, H., Schloter, M. (2012):
  Plant litter and soil type drive abundance, activity and community structure of alkB harbouring microbes in different soil compartments
  ISME J. 6 (9), 1763 - 1774 10.1038/ismej.2012.17
• Schulz, S., Yuyunkina, T., Pagel, H., Wick, L.Y., Poll, C., Streck, T., Kandeler, E., Schloter, M. (2012):
  The influence of the herbicide 2-methyl-4-chlorophenoxyacetic acid (MCPA) on the mineralization of litter-derived alkanes and the abundance of the alkane monooxygenase gene (alkB) in the detritusphere of Pisum sativum (L.)
  Biol. Fert. Soils 48 (8), 933 - 940 10.1007/s00374-012-0685-2
• Schuster, J., Schäfer, F., Hübler, N., Brandt, A., Rosell, M., Härtig, C., Harms, H., Müller, R.H., Rohwerder, T. (2012):
  Bacterial degradation of tert-amyl alcohol proceeds via hemiterpene 2-methyl-3-buten-2-ol by employing the tertiary alcohol desaturase function of the Rieske nonheme mononuclear iron oxygenase MdpJ
  J. Bacteriol. 194 (5), 972 - 981 10.1128/JB.06384-11
• Siegfried, K., Endes, C., Bhuiyan, A.F.M.K., Kuppardt, A., Mattusch, J., van der Meer, J.R., Chatzinotas, A., Harms, H. (2012):
  Field testing of arsenic in groundwater samples of Bangladesh using a test kit based on lyophilized bioreporter bacteria
  Environ. Sci. Technol. 46 (6), 3281 - 3287 10.1021/es203511k
• Solé, M., Müller, I., Pecyna, M.J., Fetzer, I., Harms, H., Schlosser, D. (2012):
  Differential regulation by organic compounds and heavy metals of multiple laccase genes in the aquatic hyphomycete Clavariopsis aquatica
  Appl. Environ. Microb. 78 (13), 4732 - 4739 10.1128/AEM.00635-12
• Stolpovsky, K., Gharasoo, M., Thullner, M. (2012):
  The impact of pore-size heterogeneities on the spatiotemporal variation of microbial metabolic activity in porous media
  Soil Sci. 177 (2), 98 - 110 10.1097/SS.0b013e318241105d
• Taubert, M., Vogt, C., Wubet, T., Kleinsteuber, S., Tarkka, M.T., Harms, H., Buscot, F., Richnow, H.-H., von Bergen, M., Seifert, J. (2012):
  Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium
  ISME J. 6 (12), 2291 - 2301 10.1038/ismej.2012.68
• Thullner, M., Centler, F., Richnow, H.-H., Fischer, A. (2012):
  Quantification of organic pollutant degradation in contaminated aquifers using compound specific stable isotope analysis – Review of recent developments
  Org. Geochem. 42 (12), 1440 - 1460 10.1016/j.orggeochem.2011.10.011
• Tischer, K., Zeder, M., Klug, R., Pernthaler, J., Schattenhofer, M., Harms, H., Wendeberg, A. (2012):
  Fluorescence in situ hybridization (CARD-FISH) of microorganisms in hydrocarbon contaminated aquifer sediment samples
  Syst. Appl. Microbiol. 35 (8), 526 - 532 10.1016/j.syapm.2012.01.004
• Wendeberg, A., Zielinski, F.U., Borowski, C., Dubilier, N. (2012):
  Expression patterns of mRNAs for methanotrophy and thiotrophy in symbionts of the hydrothermal vent mussel Bathymodiolus puteoserpentis
  ISME J. 6 (1), 104 - 112 10.1038/ismej.2011.81
• Yaneva, N., Schuster, J., Schäfer, F., Lede, V., Przybylski, D., Paproth, T., Harms, H., Müller, R.H., Rohwerder, T. (2012):
  Bacterial acyl-CoA mutase specifically catalyzes coenzyme B₁₂-dependent isomerization of 2-hydroxyisobutyryl-CoA and (S)-3-hydroxybutyryl-CoA
  J. Biol. Chem. 287 (19), 15502 - 15511 10.1074/jbc.M111.314690

2011 (35)

• Banitz, T., Fetzer, I., Johst, K., Wick, L.Y., Harms, H., Frank, K. (2011):
  Assessing biodegradation benefits from dispersal networks
  Ecol. Model. 222 (14), 2552 - 2560 10.1016/j.ecolmodel.2010.07.005
• Banitz, T., Wick, L.Y., Fetzer, I., Frank, K., Harms, H., Johst, K. (2011):
  Dispersal networks for enhancing bacterial degradation in heterogeneous environments
  Environ. Pollut. 159 (10), 2781 - 2788 10.1016/j.envpol.2011.05.008
• Centler, F., Fetzer, I., Thullner, M. (2011):
  Modeling population patterns of chemotactic bacteria in homogenous porous media
  J. Theor. Biol. 287 , 82 - 91 10.1016/j.jtbi.2011.07.024
• Ciudad, G., Reyes, I., Azócar, L., Briones, R., Jorquera, M., Wick, L.Y., Navia, R. (2011):
  Innovative approaches for effective selection of lipase-producing microorganisms as whole cell catalysts for biodiesel production
  New Biotech. 28 (4), 375 - 381 10.1016/j.nbt.2011.03.009
• Ciudad, G., Reyes, I., Jorquera, M.A., Azócar, L., Wick, L.Y., Navia, R. (2011):
  Novel three-phase bioreactor concept for fatty acid alkyl ester production using R. oryzae as whole cell catalyst
  World J. Microbiol. Biotechnol. 27 (11), 2505 - 2512 10.1007/s11274-011-0719-1
• De Biase, C., Reger, D., Schmidt, A., Jechalke, S., Reiche, N., Martínez-Lavanchy, P.M., Rosell, M., van Afferden, M., Maier, U., Oswald, S.E., Thullner, M. (2011):
  Treatment of volatile organic contaminants in a vertical flow filter: relevance of different removal processes
  Ecol. Eng. 37 (9), 1292 - 1303 10.1016/j.ecoleng.2011.03.023
• Fester, T., Fetzer, I., Buchert, S., Lucas, R., Rillig, M., Härtig, C. (2011):
  Towards a systemic metabolic signature of the arbuscular mycorrhizal interaction
  Oecologia 167 (4), 913 - 924 10.1007/s00442-011-2037-6
• Fester, T., Sawers, R. (2011):
  Progress and challenges in agricultural applications of arbuscular mycorrhizal fungi
  Crit. Rev. Plant Sci. 30 (5), 459 - 470 10.1080/07352689.2011.605741
• Girardi, C., Greve, J., Lamshöft, M., Fetzer, I., Miltner, A., Schäffer, A., Kästner, M. (2011):
  Biodegradation of ciprofloxacin in water and soil and its effects on the microbial communities
  J. Hazard. Mater. 198 , 22 - 30 10.1016/j.jhazmat.2011.10.004
• Gröbe, G., Ullrich, R., Pecyna, M.J., Kapturska, D., Friedrich, S., Hofrichter, M., Scheibner, K. (2011):
  High-yield production of aromatic peroxygenase by the agaric fungus Marasmius rotula
  AMB Express 1 , art. 31 10.1186/2191-0855-1-31
• Hahn-Tomer, S. (2011):
  ARSOlux® – Biosensor basierend auf Bioreporter-Bakterien zur Detektion von Arsen im Trinkwasser. It introduces itself ARSOlux (R) - Biosensor based on a bioreporter bacteria for the detection of arsenic in drinking water
  Grundwasser 16 (2), 133 - 134 10.1007/s00767-011-0168-7
• Hanzel, J., Thullner, M., Harms, H., Wick, L.Y. (2011):
  Microbial growth with vapor-phase substrate
  Environ. Pollut. 159 (4), 858 - 864 10.1016/j.envpol.2010.12.032
• Harms, H., Schlosser, D., Wick, L.Y. (2011):
  Untapped potential: exploiting fungi in bioremediation of hazardous chemicals
  Nat. Rev. Microbiol. 9 (3), 177 - 192 10.1038/nrmocro2519
• Harnisch, F., Koch, C., Patil, S.A., Hübschmann, T., Müller, S., Schröder, U. (2011):
  Revealing the electrochemically driven selection in natural community derived microbial biofilms using flow-cytometry
  Energy Environ. Sci. (4), 1265 - 1267 10.1039/c0ee00605j
• Jechalke, S., Rosell, M., Martínez-Lavanchy, P.M., Pérez-Leiva, P., Rohwerder, T., Vogt, C., Richnow, H.H. (2011):
  Linking low-level stable isotope fractionation to expression of the cytochrome P450 monooxygenase-encoding ethB gene for elucidation of methyl tert-butyl ether biodegradation in aerated treatment pond systems
  Appl. Environ. Microb. 77 (3), 1086 - 1096 10.1128/AEM.01698-10
• Krauss, G.-J., Solé, M., Krauss, G., Schlosser, D., Wesenberg, D., Bärlocher, F. (2011):
  Fungi in freshwaters: ecology, physiology and biochemical potential
  FEMS Microbiol. Rev. 35 (4), 620 - 651 10.1111/j.1574-6976.2011.00266.x
• Macherius, A., Kuschk, P., Haertig, C., Moeder, M., Shtemenko, N.I., Bayona, A.H., Heredia Guerrero, J.A., Gey, M. (2011):
  Composition changes in the cuticular surface lipids of the helophytes Phragmites australis and Juncus effusus as result of pollutant exposure
  Environ. Sci. Pollut. Res. 18 (5), 727 - 733 10.1007/s11356-010-0416-x
• Martínez-Lavanchy, P.M., Dohrmann, A.B., Imfeld, G., Trescher, K., Tebbe, C.C., Richnow, H.-H., Nijenhuis, I. (2011):
  Detection of monochlorobenzene metabolizing bacteria under anoxic conditions by DNA-stable isotope probing
  Biodegradation 22 (5), 973 - 982 10.1007/s10532-011-9456-2
• Maskow, T., Schubert, T., Wolf, A., Buchholz, F., Regestein, L., Buechs, J., Mertens, F., Harms, H., Lerchner, J. (2011):
  Potentials and limitations of miniaturized calorimeters for bioprocess monitoring
  Appl. Microbiol. Biotechnol. 92 (1), 55 - 66 10.1007/s00253-011-3497-7
• Oroszi, S., Jakob, T., Wilhelm, C., Harms, H., Maskow, T. (2011):
  Photosynthetic energy conversion in the diatom Phaeodactylum tricornutum. Measuring by calorimetry, oxygen evolution and pulse-amplitude modulated fluorescence
  J. Therm. Anal. Calorim. 104 (1), 223 - 231 10.1007/s10973-011-1358-3
• Patil, S.A., Harnisch, F., Koch, C., Hübschmann, T., Fetzer, I., Carmona-Martínez, A.A., Müller, S., Schröder, U. (2011):
  Electroactive mixed culture derived biofilms in microbial bioelectrochemical systems: the role of pH on biofilm formation, performance and composition
  Bioresour. Technol. 102 (20), 9683 - 9690 10.1016/j.biortech.2011.07.087
• Petersen, J.M., Zielinski, F.U., Pape, T., Seifert, R., Moraru, C., Amann, R., Hourdez, S., Girguis, P.R., Wankel, S.D., Barbe, V., Pelletier, E., Fink, D., Borowski, C., Bach, W., Dubilier, N. (2011):
  Hydrogen is an energy source for hydrothermal vent symbioses
  Nature 476 (7359), 176 - 180 10.1038/nature10325
• Rakoczy, J., Schleinitz, K.M., Müller, N., Richnow, H.H., Vogt, C. (2011):
  Effects of hydrogen and acetate on benzene mineralisation under sulphate-reducing conditions
  FEMS Microbiol. Ecol. 77 (2), 238 - 247 10.1111/j.1574-6941.2011.01101.x
• Sander, S.G., Hunter, K.A., Harms, H., Wells, M. (2011):
  Numerical approach to speciation and estimation of parameters used in modeling trace metal bioavailability
  Environ. Sci. Technol. 45 (15), 6388 - 6395 10.1021/es200113v
• Schäfer, F., Muzica, L., Schuster, J., Treuter, N., Rosell, M., Harms, H., Müller, R.H., Rohwerder, T. (2011):
  Formation of alkenes via degradation of tert-alkyl ethers and alcohols by Aquincola tertiaricarbonis L108 and Methylibium spp.
  Appl. Environ. Microb. 77 (17), 5981 - 5987 10.1128/AEM.00093-11
• Schattenhofer, M., Wulf, J., Kostadinov, I., Glöckner, F.O., Zubkov, M.V., Fuchs, B.M. (2011):
  Phylogenetic characterisation of picoplanktonic populations with high and low nucleic acid content in the North Atlantic Ocean
  Syst. Appl. Microbiol. 34 (6), 470 - 475 10.1016/j.syapm.2011.01.008
• Schäwe, R., Fetzer, I., Tönniges, A., Härtig, C., Geyer, W., Harms, H., Chatzinotas, A. (2011):
  Evaluation of FT-IR spectroscopy as a tool to quantify bacteria in binary mixed cultures
  J. Microbiol. Methods 86 (2), 182 - 187 10.1016/j.mimet.2011.05.001
• Smith, K.E.C., Thullner, M., Wick, L.Y., Harms, H. (2011):
  Dissolved organic carbon enhances the mass transfer of hydrophobic organic compounds from nonaqueous phase liquids (NAPLs) into the aqueous phase
  Environ. Sci. Technol. 45 (20), 8741 - 8747 10.1021/es202983k
• Stolpovsky, K., Martínez-Lavanchy, P.M., Heipieper, H.J., van Cappellen, P., Thullner, M. (2011):
  Incorporating dormancy in dynamic microbial community models
  Ecol. Model. 222 (17), 3092 - 3102 10.1016/j.ecolmodel.2011.07.006
• Trutnau, M., Petzold, M., Mehlig, L., Eschenhagen, M., Geipel, K., Müller, S., Bley, T., Röske, I. (2011):
  Using a carbon-based ASM3 EAWAG Bio-P for modelling the enhanced biological phosphorus removal in anaerobic/aerobic activated sludge systems
  Bioprocess. Biosyst. Eng. 34 (3), 287 - 295 10.1007/s00449-010-0470-2
• Valet, G., Endl, E., Müller, S. (2011):
  20 years of the German Society for Cytometry: past and future concepts
  Cytom. Part A 79A (11), 891 - 893 10.1002/cyto.a.21141
• van Afferden, M., Rahman, K.Z., Mosig, P., De Biase, C., Thullner, M., Oswalt, P., Müller, R.A. (2011):
  Remediation of groundwater contaminated with MTBE and benzene: the potential of vertical-flow soil filter systems
  Water Res. 45 (16), 5063 - 5074 10.1016/j.watres.2011.07.010
• Vogt, C., Kleinsteuber, S., Richnow, H.H. (2011):
  Anaerobic benzene degradation by bacteria
  Microb. Biotechnol. 4 (6), 710 - 724 10.1111/j.1751-7915.2011.00260.x
• Zielinski, F., Gennerich, H.H., Borowski, C., Wenzhöfer, F., Dubilier, N. (2011):
  In situ measurements of hydrogen sulfide, oxygen, and temperature in diffuse fluids of an ultramafic-hosted hydrothermal vent field (Logatchev, 14°45'N, Mid-Atlantic Ridge): implications for chemosymbiotic bathymodiolin mussels
  Geochem. Geophys. Geosyst. 12 (9), 1 - 21 10.1029/2011GC003632
• Ziganshin, A.M., Schmidt, T., Scholwin, F., Il'inskaya, O.N., Harms, H., Kleinsteuber, S. (2011):
  Bacteria and archaea involved in anaerobic digestion of distillers grains with solubles
  Appl. Microbiol. Biotechnol. 89 (6), 2039 - 2052 10.1007/s00253-010-2981-9

2010 (50)

• Bombach, P., Chatzinotas, A., Neu, T.R., Kästner, M., Lueders, T., Vogt, C. (2010):
  Enrichment and characterization of a sulfate-reducing toluene-degrading microbial consortium by combining in situ microcosms and stable isotope probing techniques
  FEMS Microbiol. Ecol. 71 (2), 237 - 246 10.1111/j.1574-6941.2009.00809.X
• Buchholz, F., Harms, H., Maskow, T. (2010):
  Biofilm research using calorimetry - a marriage made in heaven?
  Biotechnol. J. 5 (12), 1339 - 1350 10.1002/biot.201000287
• Buchholz, F., Wolf, A., Lerchner, J., Mertens, F., Harms, H., Maskow, T. (2010):
  Chip calorimetry for fast and reliable evaluation of bactericidal and bacteriostatic treatments of biofilms
  Antimicrob. Agents Chemother. 54 (1), 312 - 319 10.1128/AAC.00583-09
• Centler, F., Kaleta, C., Speroni di Fenizio, P., Dittrich, P. (2010):
  A parallel algorithm to compute chemical organizations in biological networks
  Bioinformatics 26 (14), 1788 - 1789 10.1093/bioinformatics/btq263
• Centler, F., Shao, H., De Biase, C., Park, C.-H., Regnier, P., Kolditz, O., Thullner, M. (2010):
  GeoSysBRNS-A flexible multidimensional reactive transport model for simulating biogeochemical subsurface processes
  Comput. Geosci. 36 (3), 397 - 405 10.1016/j.cageo.2009.06.009
• Deepthike, H.U., Tecon, R., van Kooten, G.K., van der Meer, J.R., Harms, H., Wells, M., Short, J. (2010):
  Response to comment on "Unlike PAHs from Exxon Valdez Crude Oil, PAHs from Gulf of Alaska Coals are not Readily Bioavailable"
  Environ. Sci. Technol. 44 (6), 2212 - 2213 10.1021/es100176k
• Duldhardt, I., Gaebel, J., Chrzanowski, Ł., Nijenhuis, I., Schauer, F., Heipieper, H.J. (2010):
  Adaptation of anaerobically grown Thauera aromatica, Geobacter sulfurreducens and Desulfococcus multivorans to organic solvents on the level of membrane fatty acid composition
  Microb. Biotechnol. 3 (2), 201 - 209 10.1111/j.1751-7915.2009.00124.X
• Findening, B.M., Chatzinotas, A., Boenigk, J. (2010):
  Taxonomic and ecological characterization of stomatocysts of Spumella-like flagellates (Chrysophyceae)
  J. Phycol. 46 (5), 868 - 881 10.1111/j.1529-8817-2010.00892.x
• Foit, K., Chatzinotas, A., Liess, M. (2010):
  Short-term disturbance of a grazer has long-term effects on bacterial communities-Relevance of trophic interactions for recovery from pesticide effects
  Aquat. Toxicol. 99 (2), 205 - 211 10.1016/j.aquatox.2010.04.019
• Furuno, S., Päzolt, K., Rabe, C., Neu, T.R., Harms, H., Wick, L.Y. (2010):
  Fungal mycelia allow chemotactic dispersal of polycyclic aromatic hydrocarbon-degrading bacteria in water-unsaturated systems
  Environ. Microbiol. 12 (6), 1391 - 1398 10.1111/j.1462-2920.2009.02022.x
• Galliker, P., Hommes, G., Schlosser, D., Corvini, P.F.-X., Shahgaldian, P. (2010):
  Laccase-modified silica nanoparticles efficiently catalyze the transformation of phenolic compounds
  J. Colloid Interface Sci. 349 (1), 98 - 105 10.1016/j.jcis.2010.05.031
• Hanzel, J., Harms, H., Wick, L. (2010):
  Bacterial chemotaxis along vapor-phase gradients of naphthalene
  Environ. Sci. Technol. 44 (24), 9304 - 9310 10.1021/es100776h
• Herrmann, S., Kleinsteuber, S., Chatzinotas, A., Kuppardt, A., Lueders, T., Richnow, H.H., Vogt, C. (2010):
  Functional characterization of an anaerobic benzene-degrading enrichment culture by DNA stable isotope probing
  Environ. Microbiol. 12 (2), 401 - 411 10.1111/j.1462-2920.2009.02077.x
• Hesse, F., Harms, H., Attinger, S., Thullner, M. (2010):
  Linear exchange model for the description of mass transfer limited bioavailability at the pore scale
  Environ. Sci. Technol. 44 (6), 2064 - 2071 10.1021/es902489q
• Hölscher, T., Breuer, U., Adrian, L., Harms, H., Maskow, T. (2010):
  Production of the chiral compound (R)-3-Hydroxybutyrate by a genetically engineered methylotrophic bacterium
  Appl. Environ. Microb. 76 (16), 5585 - 5591 10.1128/AEM.01065-10
• Imfeld, G., Aragonés, C.E., Fetzer, I., Mészáros, E., Zeiger, S., Nijenhuis, I., Nikolausz, M., Delerce, S., Richnow, H.H. (2010):
  Characterization of microbial communities in the aqueous phase of a constructed model wetland treating 1,2-dichloroethene-contaminated groundwater
  FEMS Microbiol. Ecol. 72 (1), 74 - 88 10.1111/j.1574-6941.2009.00825.x
• Jehmlich, N., Fetzer, I., Seifert, J., Mattow, J., Vogt, C., Harms, H., Thiede, B., Richnow, H.H., von Bergen, M., Schmidt, F. (2010):
  Decimal place slope: a fast and precise method for quantifying ¹³C incorporation levels for detecting the metabolic activity of microbial species
  Mol. Cell. Proteomics 9 (6), 1221 - 1227 10.1074/mcp.M900407-MCP200
• Jehmlich, N., Hübschmann, T., Gesell Salazar, M., Völker, U., Benndorf, D., Müller, S., von Bergen, M., Schmidt, F. (2010):
  Advanced tool for characterization of microbial cultures by combining cytomics and proteomics
  Appl. Microbiol. Biotechnol. 88 (2), 575 - 584 10.1007/s00253-010-2753-6
• Jehmlich, N., Kleinsteuber, S., Vogt, C., Benndorf, D., Harms, H., Schmidt, F., von Bergen, M., Seifert, J. (2010):
  Phylogenetic and proteomic analysis of an anaerobic toluene-degrading community
  J. Appl. Microbiol. 109 (6), 1937 - 1945 10.1111/j.1365-2672.2010.04823.x
• Jousset, A., Lara, E., Nikolausz, M., Harms, H., Chatzinotas, A. (2010):
  Application of the denaturing gradient gel electrophoresis (DGGE) technique as an efficient diagnostic tool for ciliate communities in soil
  Sci. Total Environ. 408 (5), 1221 - 1225 10.1016/j.scitotenv.2009.09.056
• Koschorreck, M., Geller, W., Neu, T.R., Kleinsteuber, S., Kunze, T., Trosiener, A., Wendt-Potthoff, K. (2010):
  Structure and function of the microbial community in an in situ reactor to treat an acidic mine pit lake
  FEMS Microbiol. Ecol. 73 (2), 385 - 395 10.1111/j.1574-6941.2010.00886.x
• Kunapuli, U., Jahn, M.K., Lueders, T., Geyer, R., Heipieper, H.J., Meckenstock, R.U. (2010):
  Desulfitobacterium aromaticivorans sp. nov. and Geobacter toluenoxydans sp. nov., iron-reducing bacteria capable of anaerobic degradation of monoaromatic hydrocarbons
  Int. J. Syst. Evol. Microbiol. 60 (3), 686 - 695 10.1099/ijs.0.003525-0
• Kuppardt, A., Vetterlein, D., Harms, H., Chatzinotas, A. (2010):
  Visualisation of gradients in arsenic concentrations around individual roots of Zea mays L. using agar-immobilized bioreporter bacteria
  Plant Soil 329 (1-2), 295 - 306 10.1007/s11104-009-0154-3
• Kuppardt, S., Chatzinotas, A., Kästner, M. (2010):
  Development of a fatty acid and RNA stable isotope probing-based method for tracking protist grazing on bacteria in wastewater
  Appl. Environ. Microb. 76 (24), 8222 - 8230 10.1128/AEM.01632-10
• Lammirato, C., Miltner, A., Wick, L.Y., Kästner, M. (2010):
  Hydrolysis of cellobiose by β-glucosidase in the presence of soil minerals - Interactions at solid-liquid interfaces and effects on enzyme activity levels
  Soil Biol. Biochem. 42 (12), 2203 - 2210 10.1016/j.soilbio.2010.08.018
• Leibeling, S., Schmidt, F., Jehmlich, N., von Bergen, M., Müller, R.H., Harms, H. (2010):
  Declining capacity of starving Delftia acidovorans MC1 to degrade phenoxypropionate herbicides correlates with oxidative modification of the initial enzyme
  Environ. Sci. Technol. 44 (10), 3793 - 3799 10.1021/es903619j
• Leibeling, S., Taubert, M., Seifert, J., von Bergen, M., Harms, H., Müller, R.H. (2010):
  Adaptation of the herbicide-degrading strain Delftia acidovorans MC1 through carbonylation of RdpA as key enzyme
  J. Biotechnol. 150 (Suppl. 1), S262 - S263 10.1016/j.jbiotec.2010.09.160
• Mariana, F., Buchholz, F., Harms, H., Yong, Z., Yao, J., Maskow, T. (2010):
  Isothermal titration calorimetry - A new method for the quantification of microbial degradation of trace pollutants
  J. Microbiol. Methods 82 (1), 42 - 48 10.1016/j.mimet.2010.03.024
• Maskow, T., Kemp, R., Buchholz, F., Schubert, T., Kiesel, B., Harms, H. (2010):
  What heat is telling us about microbial conversions in nature and technology: from chip- to megacalorimetry
  Microb. Biotechnol. 3 (3), 269 - 284 10.1111/j.1751-7915.2009.00121.x
• Maskow, T., Kiesel, B., Schubert, T., Yong, Z., Harms, H., Yao, J. (2010):
  Calorimetric real time monitoring of lambda prophage induction
  J. Virol. Methods 168 (1-2), 126 - 132 10.1016/j.jviromet.2010.05.002
• Müller, S., Harms, H., Bley, T. (2010):
  Origin and analysis of microbial population heterogeneity in bioprocesses
  Curr. Opin. Biotechnol. 21 (1), 100 - 113 10.1016/j.copbio.2010.01.002
• Müller, S., Nebe-von-Caron, G. (2010):
  Functional single-cell analyses: flow cytometry and cell sorting of microbial populations and communities
  FEMS Microbiol. Rev. 34 (4), 544 - 587 10.1111/j.1574-6976.2010.00214.x
• Nizzetto, L., Macleod, M., Borgå, K., Cabrerizo, A., Dachs, J., Di Guardo, A., Ghirardello, D., Hansen, K.M., Jarvis, A., Lindroth, A., Ludwig, B., Monteith, D., Perlinger, J.A., Scheringer, M., Schwendenmann, L., Semple, K.T., Wick, L.Y., Zhang, G., Jones, K.C. (2010):
  Past, present, and future controls on levels of persistent organic pollutants in the global environment. Understanding the legacy of persistent organic pollutants requires studying the transition from primary to secondary source control
  Environ. Sci. Technol. 44 (17), 6526 - 6531 10.1021/es100178f
• Otto, B., Schlosser, D., Reisser, W. (2010):
  First description of a laccase-like enzyme in soil algae
  Arch. Microbiol. 192 (9), 759 - 768 10.1007/s00203-010-0603-7
• Perner, M., Petersen, J.M., Zielinski, F.U., Gennerich, H.H., Seifert, R. (2010):
  Geochemical constraints on the diversity and activity of H₂-oxidizing microorganisms in diffuse hydrothermal fluids from a basalt- and an ultramafic-hosted vent
  FEMS Microbiol. Ecol. 74 (1), 55 - 71 10.1111/j.1574-6941.2010.00940.x
• Przybylski, D., Yaneva, N., Harms, H., Rohwerder, T., Müller, R.H. (2010):
  Functional expression of 2-hydroxyisobutyryl-coa mutase in different E. coli derivatives
  J. Biotechnol. 150 (Suppl. 1), S258 10.1016/j.jbiotec.2010.09.149
• Rohwerder, T., Müller, R.H. (2010):
  Biosynthesis of 2-hydroxyisobutyric acid (2-HIBA) from renewable carbon
  Microb. Cell. Fact. 9 , art. 13 10.1186/1475-2859-9-13
• Rosell, M., Finsterbusch, S., Jechalke, S., Hübschmann, T., Vogt, C., Richnow, H.H. (2010):
  Evaluation of the effects of low oxygen concentration on stable isotope fractionation during Aerobic MTBE biodegradation
  Environ. Sci. Technol. 44 (1), 309 - 315 10.1021/es902491d
• Schäfer, F., Harms, H., Rohwerder, T., Müller, R.H. (2010):
  Microbial synthesis of chiral alcohols using a novel monooxygenase
  J. Biotechnol. 150 (Suppl. 1), S356 10.1016/j.jbiotec.2010.09.406
• Schleinitz, K.M., Vallaeys, T., Kleinsteuber, S. (2010):
  Structural characterization of ISCR8, ISCR22, and ISCR23, subgroups of IS91-like insertion elements
  Antimicrob. Agents Chemother. 54 (10), 4321 - 4328 10.1128/AAC.00006-10
• Sträuber, H., Hübschmann, T., Jehmlich, N., Schmidt, F., von Bergen, M., Harms, H., Müller, S. (2010):
  NBDT (3-(N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino)-3-toluene) - A novel fluorescent dye for studying mechanisms of toluene uptake into vital bacteria
  Cytom. Part A 77A (2), 113 - 120 10.1002/cyto.a.20811
• Sträuber, H., Müller, S. (2010):
  Viability states of bacteria - specific mechanisms of selected probes
  Cytom. Part A 77A (7), 623 - 634 10.1002/cyto.a.20920
• Thullner, M. (2010):
  Comparison of bioclogging effects in saturated porous media within one- and two-dimensional flow systems
  Ecol. Eng. 36 (2), 176 - 196 10.1016/j.ecoleng.2008.12.037
• Thullner, M. (2010):
  Response to "Comment on 'Comparison of bioclogging effects in saturated porous media within one- and two-dimensional flow systems' by Martin Thullner" by Philippe Baveye
  Ecol. Eng. 36 (6), 837 - 838 10.1016/j.ecoleng.2009.12.015
• Villanueva, L., del Campo, J., Guerrero, R., Geyer, R. (2010):
  Intact phospholipid and quinone biomarkers to assess microbial diversity and redox state in microbial mats
  Microb. Ecol. 60 (1), 226 - 238 10.1007/s00248-010-9645-2
• Wick, L.Y., Buchholz, F., Fetzer, I., Kleinsteuber, S., Härtig, C., Shi, L., Miltner, A., Harms, H., Pucci, G.N. (2010):
  Responses of soil microbial communities to weak electric fields
  Sci. Total Environ. 408 (20), 4886 - 4893 10.1016/j.scitotenv.2010.06.048
• Witzig, M., Boguhn, J., Kleinsteuber, S., Fetzer, I., Rodehutscord, M. (2010):
  Influence of the maize silage to grass silage ratio and feed particle size of rations for ruminants on the community structure of ruminal Firmicutes in vitro
  J. Appl. Microbiol. 109 (6), 1998 - 2010 10.1111/j.1365-2672.2010.04829.x
• Witzig, M., Boguhn, J., Kleinsteuber, S., Fetzer, I., Rodehutscord, M. (2010):
  Effect of the corn silage to grass silage ratio and feed particle size of diets for ruminants on the ruminal Bacteroides-Prevotella community in vitro
  Anaerobe 16 (4), 412 - 419 10.1016/j.anaerobe.2010.05.002
• Zhang, C., Kang, Q., Wang, X., Zilles, J.L., Müller, R.H., Werth, C.J. (2010):
  Effects of pore-scale heterogeneity and transverse mixing on bacterial growth in porous media
  Environ. Sci. Technol. 44 (8), 3085 - 3092 10.1021/es903396h
• Zhou, Y., Yao, J., He, M., Choi, M.M.F., Feng, L., Chen, H., Wang, F., Chen, K., Zhuang, R., Maskow, T., Wang, G., Zaray, G. (2010):
  Reduction in toxicity of arsenic(III) to Halobacillus sp. Y35 by kaolin and their related adsorption studies
  J. Hazard. Mater. 176 (1-3), 487 - 494 10.1016/j.jhazmat.2009.11.056