Details zur Publikation

Referenztyp Zeitschriften
DOI / URL Link
Titel (primär) Complete genome sequence of Pseudoalteromonas phage vB_PspS-H40/1 (formerly H40/1) that infects Pseudoalteromonas sp. strain H40 and is used as biological tracer in hydrological transport studies
Autor Kallies, R.; Kiesel, B.; Schmidt, M.; Kacza, J.; Ghanem, N.; Narr, A.; Zopfi, J.; Wick, L.Y.; Hackermüller, J.; Harms, H.; Chatzinotas, A.;
Journal / Serie Standards in Genomic Sciences
Erscheinungsjahr 2017
Department ISOBIO; UMB; iDiv; MOLSYB;
Band/Volume 12
Sprache englisch;
POF III (gesamt) T41;
Keywords Pseudoalteromonas phage; Siphoviridae; AquaDiva; marine phage; virus; genome; bacteriophages as tracers
UFZ Querschnittsthemen ProVIS; RU3;
Abstract Pseudoalteromonas phage vB_PspS-H40/1 is a lytic phage that infects Pseudoalteromonas sp. strain H40. Both, the phage and its host were isolated in the 1970s from seawater samples collected from the North Sea near the island of Helgoland, Germany. The phage particle has an icosahedral capsid with a diameter
of ~43 to 45 nm and a long non-contractile tail of ~68 nm in length, a typical morphology for members of the Siphoviridae family. The linear dsDNA genome of Pseudoalteromonas phage vB_PspS-H40/1 has a sequence length of 45,306 bp and a GC content of 40.6%. The genome has a modular structure and contains a high proportion of sequence information for hypothetical proteins, typically seen in phage
genome sequences. This is the first report of the complete genome sequence of this lytic phage, which has been frequently used since the 1990s as biological tracer in hydrogeological transport studies.
ID 18351
dauerhafte UFZ-Verlinkung http://www.ufz.de/index.php?en=20939&ufzPublicationIdentifier=18351
Kallies, R., Kiesel, B., Schmidt, M., Kacza, J., Ghanem, N., Narr, A., Zopfi, J., Wick, L.Y., Hackermüller, J., Harms, H., Chatzinotas, A. (2017):
Complete genome sequence of Pseudoalteromonas phage vB_PspS-H40/1 (formerly H40/1) that infects Pseudoalteromonas sp. strain H40 and is used as biological tracer in hydrological transport studies
Stand. Genomic Sci. 12 , art. 20