Details zur Publikation

Referenztyp Zeitschriften
DOI / URL Link
Creative Commons Lizenz creative commons licence
Titel (primär) Metagenomes, metatranscriptomes and microbiomes of naturally decomposing deadwood
Autor Tláskal, V.; Brabcová, V.; Větrovský, T.; López-Mondéjar, R.; Oliveira Monteiro, L.M.; Saraiva, J.P.; Nunes da Rocha, U.; Baldrian, P.;
Journal / Serie Scientific Data
Erscheinungsjahr 2021
Department UMB;
Band/Volume 8
Seite von art. 198
Sprache englisch;
Topic T7 Bioeconomy
Supplements https://static-content.springer.com/esm/art%3A10.1038%2Fs41597-021-00987-8/MediaObjects/41597_2021_987_MOESM1_ESM.pdf
https://static-content.springer.com/esm/art%3A10.1038%2Fs41597-021-00987-8/MediaObjects/41597_2021_987_MOESM2_ESM.xlsx
https://static-content.springer.com/esm/art%3A10.1038%2Fs41597-021-00987-8/MediaObjects/41597_2021_987_MOESM3_ESM.xlsx
Abstract Deadwood represents significant carbon (C) stock in a temperate forests. Its decomposition and C mobilization is accomplished by decomposer microorganisms – fungi and bacteria – who also supply the foodweb of commensalist microbes. Due to the ecosystem-level importance of deadwood habitat as a C and nutrient stock with significant nitrogen fixation, the deadwood microbiome composition and function are critical to understanding the microbial processes related to its decomposition. We present a comprehensive suite of data packages obtained through environmental DNA and RNA sequencing from natural deadwood. Data provide a complex picture of the composition and function of microbiome on decomposing trunks of European beech (Fagus sylvatica L.) in a natural forest. Packages include deadwood metagenomes, metatranscriptomes, sequences of total RNA, bacterial genomes resolved from metagenomic data and the 16S rRNA gene and ITS2 metabarcoding markers to characterize the bacterial and fungal communities. This project will be of use to microbiologists, environmental biologists and biogeochemists interested in the microbial processes associated with the transformation of recalcitrant plant biomass.
ID 25055
dauerhafte UFZ-Verlinkung https://www.ufz.de/index.php?en=20939&ufzPublicationIdentifier=25055
Tláskal, V., Brabcová, V., Větrovský, T., López-Mondéjar, R., Oliveira Monteiro, L.M., Saraiva, J.P., Nunes da Rocha, U., Baldrian, P. (2021):
Metagenomes, metatranscriptomes and microbiomes of naturally decomposing deadwood
Sci. Data 8 , art. 198