Publication Details

Reference Category Journals
DOI / URL link
Title (Primary) A parallel algorithm to compute chemical organizations in biological networks
Author Centler, F.; Kaleta, C.; Speroni di Fenizio, P.; Dittrich, P.;
Journal Bioinformatics
Year 2010
Department UMB;
Volume 26
Issue 14
Language englisch;
Abstract Analysing genome-scale in silico models with stoichiometry-based methods is computationally demanding. The current algorithms to compute chemical organizations in chemical reaction networks are limited to small-scale networks, prohibiting a thorough analysis of large models. Here, we introduce a parallelized version of the constructive algorithm to determine chemical organizations. The algorithm is implemented in the Standard C programming language and parallelized using the message passing interface (MPI) protocol. The resulting code can be executed on computer clusters making use of an arbitrary number of processors. The algorithm is parallelized in an embarrassing parallel manner, providing good scalability.
ID 9859
Persistent UFZ Identifier https://www.ufz.de/index.php?en=20939&ufzPublicationIdentifier=9859
Centler, F., Kaleta, C., Speroni di Fenizio, P., Dittrich, P. (2010):
A parallel algorithm to compute chemical organizations in biological networks
Bioinformatics 26 (14), 1788 - 1789