2023 (28)

• Aldehoff, A.S., Karkossa, I., Engelmann, B., Rolle-Kampczyk, U., von Bergen, M., Schubert, K. (2023):
  Exploring the regulatory effects of lysine acetylation and phosphorylation in adipocyte differentiation and their exposure to emerging plastic additives
  Toxicol. Lett. 384 (Suppl. 1), S133 - S133 10.1016/S0378-4274(23)00578-7
• Braeuning, A., Balaguer, P., Bourguet, W., Carreras-Puigvert, J., Feiertag, K., Kamstra, J.H., Knapen, D., Lichtenstein, D., Marx-Stoelting, P., Rietdijk, J., Schubert, K., Spjuth, O., Stinckens, E., Thedieck, K., van den Boom, R., Vergauwen, L., von Bergen, M., Wewer, N., Zalko, D. (2023):
  Development of new approach methods for the identification and characterization of endocrine metabolic disruptors—a PARC project
  Front. Toxicol. 5 , art. 1212509 10.3389/ftox.2023.1212509
• Buchenauer, L., Haange, S.-B., Bauer, M., Rolle-Kampczyk, U.E., Wagner, M., Stucke, J., Elter, E., Fink, B., Vass, M., von Bergen, M., Schulz, A., Zenclussen, A.C., Junge, K.M., Stangl, G.I., Polte, T. (2023):
  Maternal exposure of mice to glyphosate induces depression- and anxiety-like behavior in the offspring via alterations of the gut-brain axis
  Sci. Total Environ. 905 , art. 167034 10.1016/j.scitotenv.2023.167034
• Cerdó, T., Ruiz-Rodríguez, A., Acuña, I., Torres-Espínola, F.J., Menchén-Márquez, S., Gámiz, F., Gallo, M., Jehmlich, N., Haange, S.-B., von Bergen, M., Campoy, C., Suárez, A. (2023):
  Infant gut microbiota contributes to cognitive performance in mice
  Cell Host Microbe 31 (12), 1974 - 1988.e4 10.1016/j.chom.2023.11.004
• Farag, M.A., Baky, M.H., von Bergen, M., Hegazi, N.M. (2023):
  The use of omics in monitoring food gut microbiota interaction outcomes: a review of novel trends and technologies
  Curr. Opin. Food Sci. 52 , art. 101064 10.1016/j.cofs.2023.101064
• Farag, M.A., von Bergen, M., Shao, P., Güven, E.Ç. (2023):
  How do food and drugs interact with gut microbiota? Toward better or worse health outcomes. Editorial
  J. Adv. Res. 52 , 1 - 1 10.1016/j.jare.2023.09.006
• Gant, T.W., Auerbach, S.S., von Bergen, M., Bouhifd, M., Botham, P.A., Caiment, F., Currie, R.A., Harrill, J., Johnson, K., Li, D., Rouquie, D., van Ravenzwaay, B., Sistare, F., Tralau, T., Viant, M.R., van de Laan, J.W., Yauk, C. (2023):
  Applying genomics in regulatory toxicology: a report of the ECETOC workshop on omics threshold on non-adversity
  Arch. Toxicol. 97 (8), 2291 - 2302 10.1007/s00204-023-03522-3
• Gurbuz, B., Guldiken, N., Reuken, P., Fu, L., Remih, K., Preisinger, C., Brůha, R., Leníček, M., Petrtýl, J., Reissing, J., Aly, M., Fromme, M., Zhou, B., Karkossa, I., Schubert, K., von Bergen, M., Stallmach, A., Bruns, T., Strnad, P. (2023):
  Biomarkers of hepatocellular synthesis in patients with decompensated cirrhosis
  Hepatol. Int. 17 (3), 698 - 708 10.1007/s12072-022-10473-x
• Heinze, B.M., Küsel, K., Jehmlich, N., von Bergen, M., Taubert, M. (2023):
  Metabolic versatility enables sulfur-oxidizers to dominate primary production in groundwater
  Water Res. 244 , art. 120426 10.1016/j.watres.2023.120426
• Hoffmann, A., Meir, A.Y., Hagemann, T., Czechowski, P., Müller, L., Engelmann, B., Haange, S.-B., Rolle-Kampczyk, U., Tsaban, G., Zelicha, H., Rinott, E., Kaplan, A., Shelef, I., Stumvoll, M., Blüher, M., Liang, L., Ceglarek, U., Isermann, B., von Bergen, M., Kovacs, P., Keller, M., Shai, I. (2023):
  A polyphenol-rich green Mediterranean diet enhances epigenetic regulatory potential: the DIRECT PLUS randomized controlled trial
  Metab.-Clin. Exp. 145 , art. 155594 10.1016/j.metabol.2023.155594
• Höper, T., Karkossa, I., Dumit, V.I., von Bergen, M., Schubert, K., Haase, A. (2023):
  A comparative proteomics analysis of four contact allergens in THP-1 cells shows distinct alterations in key metabolic pathways
  Toxicol. Appl. Pharmacol. 475 , art. 116650 10.1016/j.taap.2023.116650
• Karkossa, I., Fürst, S., Großkopf, H., von Bergen, M., Schubert, K. (2023):
  Oxidation is an underappreciated post-translational modification in the regulation of immune responses associated with changes in phosphorylation
  Front. Immunol. 14 , art. 1244431 10.3389/fimmu.2023.1244431
• Khan, N., Muge, E., Mulaa, F.J., Wamalwa, B., von Bergen, M., Jehmlich, N., Wick, L.Y. (2023):
  Mycelial nutrient transfer promotes bacterial co-metabolic organochlorine pesticide degradation in nutrient-deprived environments
  ISME J. 17 (4), 570 - 578 10.1038/s41396-023-01371-7
• Kister, B., Viehof, A., Rolle-Kampczyk, U., Schwentker, A., Treichel, N.S., Jennings, S., Wirtz, T.H., Blank, L.M., Hornef, M.W., von Bergen, M., Clavel, T., Kuepfer, L. (2023):
  A physiologically-based model of bile acid metabolism in mice
  iScience 26 (10), art. 107922 10.1016/j.isci.2023.107922
• Krüger, M., Chaudhari, N., Thamdrup, B., Overholt, W.A., Bristow, L.A., Taubert, M., Küsel, K., Jehmlich, N., von Bergen, M., Herrmann, M. (2023):
  Differential contribution of nitrifying prokaryotes to groundwater nitrification
  ISME J. 17 (10), 1601 - 1611 10.1038/s41396-023-01471-4
• Meir, A.Y., Keller, M., Hoffmann, A., Rinott, E., Tsaban, G., Kaplan, A., Zelicha, H., Hagemann, T., Ceglarek, U., Isermann, B., Shelef, I., Blüher, M., Stumvoll, M., Li, J., Haange, S.-B., Engelmann, B., Rolle-Kampczyk, U., von Bergen, M., Hu, F.B., Stampfer, M.J., Kovacs, P., Liang, L., Shai, I. (2023):
  The effect of polyphenols on DNA methylation-assessed biological age attenuation: the DIRECT PLUS randomized controlled trial
  BMC Med. 21 , art. 364 10.1186/s12916-023-03067-3
• Ramos-Nascimento, A., Grenga, L., Haange, S.-B., Himmelmann, A., Arndt, F.S., Ly, Y.-T., Miotello, G., Pible, O., Jehmlich, N., Engelmann, B., von Bergen, M., Mulder, E., Frings-Meuthen, P., Hellweg, C.E., Jordan, J., Rolle-Kampczyk, U., Armengaud, J., Moeller, R. (2023):
  Human gut microbiome and metabolite dynamics under simulated microgravity
  Gut Microbes 15 (2), art. 2259033 10.1080/19490976.2023.2259033
• Remih, K., Hufnagel, F., Durkalski-Mauldin, V., Lee, W.M., Su, C., Rule, J., Krieg, L., Karkossa, I., Schubert, K., von Bergen, M., Fontana, R., Strnad, P. (2023):
  Serum proteomics in American adults with acute liver failure
  J. Hepatol. 78 (Suppl. 1), S136 - S138 10.1016/S0168-8278(23)00638-4
• Remih, K., Hufnagel, F.-M., Durkalski-Mauldin, V., Lee, W., Su, Z., Rule, J., Krieg, L., Karkossa, I., Schubert, K., von Bergen, M., Fontana, R., Strnad, P. (2023):
  Serum proteomics in adults with Acute Liver Failure
  Z. Gastroent. 61 (08), e460 - e461 10.1055/s-0043-1771831
• Riva, A., Rasoulimehrabani, H., Cruz-Rubio, J.M., Schnorr, S.L., von Baeckmann, C., Inan, D., Nikolov, G., Herbold, C.W., Hausmann, B., Pjevac, P., Schintlmeister, A., Spittler, A., Palatinszky, M., Kadunic, A., Hieger, N., Del Favero, G., von Bergen, M., Jehmlich, N., Watzka, M., Lee, K.S., Wiesenbauer, J., Khadem, S., Viernstein, H., Stocker, R., Wagner, M., Kaiser, C., Richter, A., Kleitz, F., Berry, D. (2023):
  Identification of inulin-responsive bacteria in the gut microbiota via multi-modal activity-based sorting
  Nat. Commun. 14 , art. 8210 10.1038/s41467-023-43448-z
• Ruiz-Rodriguez, A., Acuña, I., Cerdo, T., Torres-Espinola, F.J., Menchen-Marquez, S., Gámiz, F., Gallo, M., Jehmlich, N., Haange, S.-B., von Bergen, M., Campoy, C., Suarez, A. (2023):
  Gut microbiota contributes to cognitive performance in infants
  IBRO Neurosci. Rep. 15 (Suppl. 1), S821 - S822 10.1016/j.ibneur.2023.08.1703
• Schmeisser, S., Miccoli, A., von Bergen, M., Berggren, E., Braeuning, A., Busch, W., Desaintes, C., Gourmelon, A., Grafström, R., Harrill, J., Hartung, T., Herzler, M., Kass, G.E.N., Kleinstreuer, N., Leist, M., Luijten, M., Marx-Stoelting, P., Poetz, O., van Ravenzwaay, B., Roggeband, R., Rogiers, V., Roth, A., Sanders, P., Thomas, R.S., Vinggaard, A.M., Vinken, M., van de Water, B., Luch, A., Tralau, T. (2023):
  New approach methodologies in human regulatory toxicology – Not if, but how and when!
  Environ. Int. 178 , art. 108082 10.1016/j.envint.2023.108082
• Tomm, J., von Bergen, M., Simon, J.-C., Treudler, R. (2023):
  Anti-inflammatory metabolites and allergenic proteins from Green Lipped Mussel (Perna canaliculus)
  Integr. J. Vet. Biosci. 7 (1), 1 - 3 10.31038/IJVB.2023711
• Torow, N., Li, R., Hitch, T.C.A., Mingels, C., Al Bounny, S., van Best, N., Stange, E.-L., Simons, B., Maié, T., Rüttger, L., Gubbi, N.M.K.P., Abbott, D.A., Benabid, A., Gadermayr, M., Runge, S., Treichel, N., Merhof, D., Rosshart, S.P., Jehmlich, N., Hand, T.W., von Bergen, M., Heymann, F., Pabst, O., Clavel, T., Tacke, F., Lelouard, H., Gesteira Costa, I., Hornef, M.W. (2023):
  M cell maturation and cDC activation determine the onset of adaptive immune priming in the neonatal Peyer’s patch
  Immunity 56 (6), 1220 - 1238 10.1016/j.immuni.2023.04.002
• Uthoff, C., Homsi, M.N., von Bergen, M. (2023):
  Acoustic and vibration monitoring of honeybee colonies for beekeeping-relevant aspects of presence of queen bee and swarming
  Comput. Electron. Agric. 205 , art. 107589 10.1016/j.compag.2022.107589
• Wang, Z., Haange, S.-B., Haake, V., Huisinga, M., Kamp, H., Buesen, R., Schubert, K., Canzler, S., Hackermüller, J., Rolle-Kampczyk, U., von Bergen, M. (2023):
  Assessing the influence of propylthiouracil and phenytoin on the metabolomes of the thyroid, liver, and plasma in a rats
  Metabolites 13 (7), art. 847 10.3390/metabo13070847
• Wilmes, P., Trezzi, J.-P., Aho, V., Jäger, C., Schade, S., Janzen, A., Hickl, O., Kunath, B., Thomas, M., Schmit, K., Garcia, P., Sciortino, A., Martin-Gallausiaux, C., Halder, R., Huarte, O.U., Heurtaux, T., Heins-Marroquin, U., Gomez-Giro, G., Weidenbach, K., Delacour, L., Laczny, C., Novikova, P., Ramiro-Garcia, J., Singh, R., Andújar, B.T., Lebrun, L., Daujeumont, A., Habier, J., Dong, X., Gavotto, F., Heintz-Buschart, A., Schneider, J., Jehmlich, N., von Bergen, M., Schymanski, E., Schmitz, R., Schwamborn, J., Glaab, E., Linster, C., Kitami, T., Buttini, M., May, P., Trenkwalder, C., Oertel, W., Mollenhauer, B. (2023):
  Artefactual source of 2-hydroxypyridine
  Research Square 10.21203/rs.3.rs-1827631/v2
• Zhang, L., Toplak, M., Saleem-Batcha, R., Höing, L., Jakob, R., Jehmlich, N., von Bergen, M., Maier, T., Teufel, R. (2023):
  Bacterial dehydrogenases facilitate oxidative inactivation and bioremediation of chloramphenicol
  ChemBioChem 24 (2), e202200632 10.1002/cbic.202200632

2022 (30)

• Brede, M., Haange, S.-B., Riede, S., Engelmann, B., Jehmlich, N., Rolle-Kampczyk, U.E., Rohn, K., Von Soosten, D., von Bergen, M., Breves, G. (2022):
  Effects of different formulations of glyphosate on rumen microbial metabolism and microbial community composition in the Rumen Simulation Technique system
  Front. Microbiol. 13 , art. 873101 10.3389/fmicb.2022.873101
• Buchenauer, L., Junge, K.M., Haange, S.-B., Simon, J.C., von Bergen, M., Hoh, A.-L., Aust, G., Zenclussen, A.C., Stangl, G.I., Polte, T. (2022):
  Glyphosate differentially affects the allergic immune response across generations in mice
  Sci. Total Environ. 850 , art. 157973 10.1016/j.scitotenv.2022.157973
• Dey, P., Malik, A., Singh, D.K., Haange, S.-B., von Bergen, M., Jehmlich, N. (2022):
  Insight to the molecular mechanisms underpinning the mycoremediation of multiple metals by proteomic technique
  Front. Microbiol. 13 , art. 872576 10.3389/fmicb.2022.872576
• Fries, C.M., Haange, S.-B., Rolle-Kampczyk, U., Till, A., Lammert, M., Grasser, L., Medawar, E., Dietrich, A., Horstmann, A., von Bergen, M., Fenske, W.K. (2022):
  Metabolic profile and metabolite analyses in extreme weight responders to gastric bypass surgery
  Metabolites 12 (5), art. 417 10.3390/metabo12050417
• Geesink, P., Taubert, M., Jehmlich, N., von Bergen, M., Küsel, K. (2022):
  Bacterial necromass is rapidly metabolized by heterotrophic bacteria and supports multiple trophic levels of the groundwater microbiome
  Microbiol. Spectr. 10 (4), e00437 10.1128/spectrum.00437-22
• Grosjean, I., Roméo, B., Domdom, M.-A., Belaid, A., D’Andréa, G., Guillot, N., Gherardi, R.K., Gal, J., Milano, G., Marquette, C.H., Hung, R.J., Landi, M.T., Han, Y., Brest, P., von Bergen, M., Klionsky, D.J., Amos, C.I., Hofman, P., Mograbi, B. (2022):
  Autophagopathies: from autophagy gene polymorphisms to precision medicine for human diseases
  Autophagy 18 (11), 2519 - 2536 10.1080/15548627.2022.2039994
• Gwak, J.-H., Awala, S.I., Nguyen, N.-L., Yu, W.-J., Yang, H.-Y., von Bergen, M., Jehmlich, N., Kits, K.D., Loy, A., Dunfield, P.F., Dahl, C., Hyun, J.-H., Rhee, S.-K. (2022):
  Sulfur and methane oxidation by a single microorganism
  Proc. Natl. Acad. Sci. U.S.A. 119 (32), e2114799119 10.1073/pnas.2114799119
• Haange, S.-B., Till, A., Bergh, P.-O., Fauler, G., Gigl, M., Löfgren-Sandblom, A., Schaap, F.G., Clavel, T., Trautwein, C., Fenske, W., Kleigrewe, K., Marschall, H.-U., Olde Damink, S.W.M., Moustafa, T., von Bergen, M., Rolle-Kampczyk, U. (2022):
  Ring trial on quantitative assessment of bile acids reveals a method- and analyte-specific accuracy and reproducibility
  Metabolites 12 (7), art. 583 10.3390/metabo12070583
• Jacoby, C., Ebenau-Jehle, C., Saum, K., Jehmlich, N., von Bergen, M., Brüls, T., Boll, M. (2022):
  Genes and enzymes involved in the biodegradation of the quaternary carbon compound pivalate in the denitrifying Thauera humireducens strain PIV-1
  Environ. Microbiol. 24 (7), 3181 - 3194 10.1111/1462-2920.16021
• Jensen Pedersen, K., Haange, S.-B., Žížalová, K., Viehof, A., Clavel, T., Leniček, M., Engelmann, B., Wick, L.Y., Schaap, F.G., Jehmlich, N., Rolle-Kampczyk, U., von Bergen, M. (2022):
  Eggerthella lenta DSM 2243 alleviates bile acid stress response in Clostridium ramosum and Anaerostipes caccae by transformation of bile acids
  Microorganisms 10 (10), art. 2025 10.3390/microorganisms10102025
• Junge, K.M., Buchenauer, L., Strunz, S., Seiwert, B., Thürmann, L., Rolle-Kampczyk, U.E., Röder, S., Borte, M., Kiess, W., von Bergen, M., Simon, J.C., Zenclussen, A.C., Schöneberg, T., Stangl, G.I., Herberth, G., Lehmann, I., Reemtsma, T., Polte, T. (2022):
  Effects of exposure to single and multiple parabens on asthma development in an experimental mouse model and a prospective cohort study
  Sci. Total Environ. 814 , art. 152676 10.1016/j.scitotenv.2021.152676
• Kage, P., Schubert, K., Treudler, R., Simon, J.-C., von Bergen, M., Tomm, J. (2022):
  Identification of new potential allergens from green-lipped mussel (Perna canaliculus)
  Iran. J. Allergy Asthma Immunol. 21 (6), 711 - 715 10.18502/ijaai.v21i6.11532
• Kaplan, A., Zelicha, H., Meir, A.Y., Rinott, E., Tsaban, G., Levakov, G., Prager, O., Salti, M., Yovell, Y., Ofer, J., Huhn, S., Beyer, F., Witte, V., Villringer, A., Meiran, N., Emesh, T.B., Kovacs, P., von Bergen, M., Ceglarek, U., Blüher, M., Stumvoll, M., Hu, F.B., Stampfer, M.J., Friedman, A., Shelef, I., Avidan, G., Shai, I. (2022):
  The effect of a high-polyphenol Mediterranean diet (Green-MED) combined with physical activity on age-related brain atrophy: the Dietary Intervention Randomized Controlled Trial Polyphenols Unprocessed Study (DIRECT PLUS)
  Am. J. Clin. Nutr. 115 (5), 1270 - 1281 10.1093/ajcn/nqac001
• Krause, J.L., Engelmann, B., Nunes da Rocha, U., Pierzchalski, A., Chang, H.D., Zenclussen, A.C., von Bergen, M., Rolle-Kampczyk, U., Herberth, G. (2022):
  MAIT cell activation is reduced by direct and microbiota-mediated exposure to bisphenols
  Environ. Int. 158 , art. 106985 10.1016/j.envint.2021.106985
• Krieg, L., Didt, K., Karkossa, I., Bernhart, S.H., Kehr, S., Subramanian, N., Lindhorst, A., Schaudinn, A., Tabei, S., Keller, M., Stumvoll, M., Dietrich, A., von Bergen, M., Stadler, P.F., Laurencikiene, J., Krüger, M., Blüher, M., Gericke, M., Schubert, K., Kovacs, P., Chakaroun, R., Massier, L. (2022):
  Multiomics reveal unique signatures of human epiploic adipose tissue related to systemic insulin resistance
  Gut 71 (11), 2179 - 2193 10.1136/gutjnl-2021-324603
• Lentz, L.S., Stutz, A.J., Meyer, N., Schubert, K., Karkossa, I., von Bergen, M., Zenclussen, A.C., Schumacher, A. (2022):
  Human chorionic gonadotropin promotes murine Treg cells and restricts pregnancy-harmful proinflammatory Th17 responses
  Front. Immunol. 13 , art. 989247 10.3389/fimmu.2022.989247
• Menanteau-Ledouble, S., Skov, J., Lukassen, M.B., Rolle-Kampczyk, U., Haange, S.-B., Dalsgaard, I., von Bergen, M., Nielsen, J.L. (2022):
  Modulation of gut microbiota, blood metabolites, and disease resistance by dietary β-glucan in rainbow trout (Oncorhynchus mykiss)
  Animal Microbiome 4 , art. 358 10.1186/s42523-022-00209-5
• Münzker, J., Haase, N., Till, A., Sucher, R., Haange, S.-B., Nemetschke, L., Gnad, T., Jäger, E., Chen, J., Riede, S.J., Chakaroun, R., Massier, L., Kovacs, P., Ost, M., Rolle-Kampczyk, U., Jehmlich, N., Weinert, J., Heiker, J.T., Klöting, N., Seeger, G., Morawski, M., Keitel, V., Pfeifer, A., von Bergen, M., Heeren, J., Krügel, U., Fenske, W.K. (2022):
  Functional changes of the gastric bypass microbiota reactivate thermogenic adipose tissue and systemic glucose control via intestinal FXR-TGR5 crosstalk in diet-induced obesity
  Microbiome 10 , art. 96 10.1186/s40168-022-01264-5
• Murthy, S., Karkossa, I., Schmidt, C., Hoffmann, A., Hagemann, T., Rothe, K., Seifert, O., Anderegg, U., von Bergen, M., Schubert, K., Rossol, M. (2022):
  Danger signal extracellular calcium initiates differentiation of monocytes into SPP1/osteopontin-producing macrophages
  Cell Death Dis. 13 , art. 53 10.1038/s41419-022-04507-3
• Nagel, M., Moretti, R., Paschke, R., von Bergen, M., Meiler, J., Kalkhof, S. (2022):
  Integrative model of the FSH receptor reveals the structural role of the flexible hinge region
  Structure 30 (10), 1424 - 1431.e3 10.1016/j.str.2022.07.007
• Riesbeck, S., Petruschke, H., Rolle-Kampczyk, U., Schori, C., Ahrens, C.H., Eberlein, C., Heipieper, H.J., von Bergen, M., Jehmlich, N. (2022):
  Adaptation and resistance: How Bacteroides thetaiotaomicron copes with the bisphenol A substitute bisphenol F
  Microorganisms 10 (8), art. 1610 10.3390/microorganisms10081610
• Sallam, I.E., Rolle-Kampczyk, U., Schäpe, S.S., Zaghloul, S.S., El Dine, R.S., Shao, P., von Bergen, M., Farag, M.A. (2022):
  Evaluation of antioxidant activity and biotransformation of Opuntia ficus fruit: The effect of in vitro and ex vivo gut microbiota metabolism
  Molecules 27 (21), art. 7568 10.3390/molecules27217568
• Schaffert, A., Karkossa, I., Ueberham, E., Schlichting, R., Walter, K., Arnold, J., Blüher, M., Heiker, J.T., Lehmann, J., Wabitsch, M., Escher, B.I., von Bergen, M., Schubert, K. (2022):
  Di-(2-ethylhexyl) phthalate substitutes accelerate human adipogenesis through PPARγ activation and cause oxidative stress and impaired metabolic homeostasis in mature adipocytes
  Environ. Int. 164 , art. 107279 10.1016/j.envint.2022.107279
• Scholz, S., Brack, W., Escher, B.I., Hackermüller, J., Liess, M., von Bergen, M., Wick, L.Y., Zenclussen, A.C., Altenburger, R. (2022):
  The EU chemicals strategy for sustainability: an opportunity to develop new approaches for hazard and risk assessment
  Arch. Toxicol. 96 (8), 2381 - 2386 10.1007/s00204-022-03313-2
• Scholz, S., Nichols, J.W., Escher, B.I., Ankley, G.T., Altenburger, R., Blackwell, B., Brack, W., Burkhard, L., Collette, T.W., Doering, J.A., Ekman, D., Fay, K., Fischer, F., Hackermüller, J., Hoffman, J.C., Lai, C., Leuthold, D., Martinovic-Weigelt, D., Reemtsma, T., Pollesch, N., Schroeder, A., Schüürmann, G., von Bergen, M. (2022):
  The eco‐exposome concept: Supporting an integrated assessment of mixtures of environmental chemicals
  Environ. Toxicol. Chem. 41 (1), 30 - 45 10.1002/etc.5242
• Schöne, C., Poehlein, A., Jehmlich, N., Adlung, N., Daniel, R., von Bergen, M., Scheller, S., Rother, M. (2022):
  Deconstructing Methanosarcina acetivorans into an acetogenic archaeon
  Proc. Natl. Acad. Sci. U.S.A. 119 (2), e2113853119 10.1073/pnas.2113853119
• Schroeter, S.A., Eveillard, D., Chaffron, S., Zoppi, J., Kampe, B., Lohmann, P., Jehmlich, N., von Bergen, M., Sanchez-Arcos, C., Pohnert, G., Taubert, M., Küsel, K., Gleixner, G. (2022):
  Microbial community functioning during plant litter decomposition
  Sci. Rep. 12 , art. 7451 10.1038/s41598-022-11485-1
• Taubert, M., Overholt, W.A., Heinze, B.M., Matanfack, G.A., Houhou, R., Jehmlich, N., von Bergen, M., Rösch, P., Popp, J., Küsel, K. (2022):
  Bolstering fitness via CO₂ fixation and organic carbon uptake: mixotrophs in modern groundwater
  ISME J. 16 (4), 1153 - 1162 10.1038/s41396-021-01163-x
• Torow, N., Li, R., Hitch, T., Mingels, C., Al Bounny, S., van Best, N., Stange, E.-L., Benabid, A., Rüttger, L., Gadermayr, M., Runge, S., Treichel, N., Merhof, D., Rosshart, S., Jehmlich, N., von Bergen, M., Heymann, F., Clavel, T., Tacke, F., Lelouard, H., Costa, I. (2022):
  Neonatal Peyer's patch cDC activation as a pacemaker of postnatal immune maturation
  Eur. J. Immunol. 52 (S1), 52 - 52 10.1002/eji.202270100
• Zelicha, H., Kloting, N., Kaplan, A., Meir, A.Y., Rinott, E., Tsaban, G., Chassidim, Y., Bluher, M., Ceglarek, U., Isermann, B., Stumvoll, M., Quayson, R.N., von Bergen, M., Engelmann, B., Rolle-Kampczyk, U., Haange, S.-B., Tuohy, K.M., Diotallevi, C., Shelef, I., Hu, F.B., Stampfer, M.J., Shai, I. (2022):
  The effect of high-polyphenol Mediterranean diet on visceral adiposity: the DIRECT PLUS randomized controlled trial
  BMC Med. 20 , art. 327 10.1186/s12916-022-02525-8

2021 (39)

• Anders, J., Petruschke, H., Jehmlich, N., Haange, S.-B., von Bergen, M., Stadler, P.F. (2021):
  A workflow to identify novel proteins based on the direct mapping of peptide-spectrum-matches to genomic locations
  BMC Bioinformatics 22 , art. 277 10.1186/s12859-021-04159-8
• Bedulina, D., Drozdova, P., Gurkov, A., von Bergen, M., Stadler, P.F., Luckenbach, T., Timofeyev, M., Kalkhof, S. (2021):
  Proteomics reveals sex-specific heat shock response of Baikal amphipod Eulimnogammarus cyaneus
  Sci. Total Environ. 763 , art. 143008 10.1016/j.scitotenv.2020.143008
• Chen, J., Haase, N., Haange, S.-B., Sucher, R., Münzker, J., Jäger, E., Schischke, K., Seyfried, F., von Bergen, M., Hankir, M.K., Krügel, U., Fenske, W.K. (2021):
  Roux-en-Y gastric bypass contributes to weight loss-independent improvement in hypothalamic inflammation and leptin sensitivity through gut-microglia-neuron-crosstalk
  Mol. Metab. 48 , art. 101214 10.1016/j.molmet.2021.101214
• Engel, K.M., Baumann, S., Blaurock, J., Rolle-Kampczyk, U., Schiller, J., von Bergen, M., Grunewald, S. (2021):
  Differences in the sperm metabolomes of smoking and nonsmoking men
  Biol. Reprod. 105 (6), 1484 - 1493 10.1093/biolre/ioab179
• Farag, M.A., von Bergen, M., Saleh, B.M., Homsi, M.N., Abd El-Al, M.S. (2021):
  How do green and black coffee brews and bioactive interaction with gut microbiome affect its health outcomes? Mining evidence from mechanistic studies, metagenomics and clinical trials
  Trends Food Sci. Technol. 118 (Part B), 920 - 937 10.1016/j.tifs.2021.11.004
• Frissen, M., Liao, L., Schneider, K.M., Djudjaj, S., Haybaeck, J., Wree, A., Rolle-Kampczyk, U., von Bergen, M., Latz, E., Boor, P., Trautwein, C. (2021):
  Bidirectional role of NLRP3 during acute and chronic cholestatic liver injury
  Hepatology 73 (5), 1836 - 1854 10.1002/hep.31494
• Genath, A., Petruschke, H., von Bergen, M., Einspanier, R. (2021):
  Influence of formic acid treatment on the proteome of the ectoparasite Varroa destructor
  PLOS One 16 (10), e0258845 10.1371/journal.pone.0258845
• Greiner–Haas, F., von Bergen, M., Sawers, R.G., Lechner, U., Türkowsky, D. (2021):
  Changes of the proteome and acetylome during transition into the stationary phase in the organohalide-respiring Dehalococcoides mccartyi strain CBDB1
  Microorganisms 9 (2), art. 365 10.3390/microorganisms9020365
• Großkopf, H., Vogel, S., Müller, C.D., Köhling, S., Dürig, J.-N., Möller, S., Schnabelrauch, M., Rademann, J., Hempel, U., von Bergen, M., Schubert, K. (2021):
  Identification of intracellular glycosaminoglycan-interacting proteins by affinity purification mass spectrometry
  Biol. Chem. 402 (11), 1427 - 1440 10.1515/hsz-2021-0167
• Großkopf, H., Walter, K., Karkossa, I., von Bergen, M., Schubert, K. (2021):
  Non-genomic AhR-signaling modulates the immune response in endotoxin-activated macrophages after activation by the environmental stressor BaP
  Front. Immunol. 12 , art. 620270 10.3389/fimmu.2021.620270
• Höper, T., Siewert, K., Dumit, V.I., von Bergen, M., Schubert, K., Haase, A. (2021):
  The contact allergen NiSO₄ triggers a distinct molecular response in primary human dendritic cells compared to bacterial LPS
  Front. Immunol. 12 , art. 644700 10.3389/fimmu.2021.644700
• Junge, K.M., Buchenauer, L., Elter, E., Butter, K., Kohajda, T., Herberth, G., Röder, S., Borte, M., Kiess, W., von Bergen, M., Simon, J.C., Rolle-Kampczyk, U.E., Lehmann, I., Gminski, R., Ohlmeyer, M., Polte, T. (2021):
  Wood emissions and asthma development: Results from an experimental mouse model and a prospective cohort study
  Environ. Int. 151 , art. 106449 10.1016/j.envint.2021.106449
• Karkossa, I., Bannuscher, A., Hellack, B., Wohlleben, W., Laloy, J., Stan, M.S., Dinischiotu, A., Wiemann, M., Luch, A., Haase, A., von Bergen, M., Schubert, K. (2021):
  Omics reveal different oxidative stress levels induced by nanomaterials in vitro and in vivo
  Toxicol. Lett. 350 (Suppl.), S125 10.1016/S0378-4274(21)00541-5
• Karkossa, I., Bannuscher, A., Hellack, B., Wohlleben, W., Laloy, J., Stan, M.S., Dinischiotu, A., Wiemann, M., Luch, A., Haase, A., von Bergen, M., Schubert, K. (2021):
  Nanomaterials induce different levels of oxidative stress, depending on the used model system: Comparison of in vitro and in vivo effects
  Sci. Total Environ. 801 , art. 149538 10.1016/j.scitotenv.2021.149538
• Kasmanas, J.C., Bartholomäus, A., Borim Corrêa, F., Tal, T., Jehmlich, N., Herberth, G., von Bergen, M., Stadler, P.F., de Carvalho, A.C.P.L.F., Nunes da Rocha, U. (2021):
  HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes
  Nucleic Acids Res. 49 (D1), D743 - D750 10.1093/nar/gkaa1031
• Kruse, S., Türkowsky, D., Birkigt, J., Matturro, B., Franke, S., Jehmlich, N., von Bergen, M., Westermann, M., Rossetti, S., Nijenhuis, I., Adrian, L., Diekert, G., Goris, T. (2021):
  Interspecies metabolite transfer and aggregate formation in a co-culture of Dehalococcoides and Sulfurospirillum dehalogenating tetrachloroethene to ethene
  ISME J. 15 (6), 1794 - 1809 10.1038/s41396-020-00887-6
• Le Duc, D., Lin, C.-C., Popkova, Y., Yang, Z., Akhil, V., Çakir, M.V., Grunewald, S., Simon, J.-C., Dietz, A., Dannenberger, D., Garten, A., Lemke, J.R., Schiller, J., Blüher, M., Nono Nankam, P.A., Rolle-Kampczyk, U., von Bergen, M., Kelso, J., Schöneberg, T. (2021):
  Reduced lipolysis in lipoma phenocopies lipid accumulation in obesity
  Int. J. Obes. 45 (3), 565 - 576 10.1038/s41366-020-00716-y
• Li, Q., Cooper, R.E., Wegner, C.-E., Taubert, M., Jehmlich, N., von Bergen, M., Küsel, K. (2021):
  Insights into autotrophic activities and carbon flow in iron-rRich pelagic aggregates (iron snow)
  Microorganisms 9 (7), art. 1368 10.3390/microorganisms9071368
• Medawar, E., Haange, S.-B., Rolle-Kampczyk, U., Engelmann, B., Dietrich, A., Thieleking, R., Wiegank, C., Fries, C., Horstmann, A., Villringer, A., von Bergen, M., Fenske, W., Witte, A.V. (2021):
  Gut microbiota link dietary fiber intake and short-chain fatty acid metabolism with eating behavior
  Transl. Psychiatr. 11 , art. 500 10.1038/s41398-021-01620-3
• Monikh, F.A., Chupani, L., Karkossa, I., Gardian, Z., Arenas-Logo, D., von Bergen, M., Schubert, K., Piackova, V., Zuskova, E., Jiskoot, W., Vijver, M.G., Peijnenburg, W.J.G.M. (2021):
  An environmental ecocorona influences the formation and evolution of the biological corona on the surface of single-walled carbon nanotubes
  NanoImpact 22 , art. 100315 10.1016/j.impact.2021.100315
• Nickel, S., Vlaic, S., Christ, M., Schubert, K., Henschler, R., Tautenhahn, F., Burger, C., Kühne, H., Erler, S., Roth, A., Wild, C., Brach, J., Hammad, S., Gittel, C., Baunack, M., Lange, U., Broschewitz, J., Stock, P., Metelmann, I., Bartels, M., Pietsch, U.-C., Krämer, S., Eichfeld, U., von Bergen, M., Dooley, S., Tautenhahn, H.-M., Christ, B. (2021):
  Mesenchymal stromal cells mitigate liver damage after extended resection in the pig by modulating thrombospondin-1/TGF-β
  npj Regen. Med. 6 , art. 84 10.1038/s41536-021-00194-4
• Petruschke, H., Schori, C., Canzler, S., Riesbeck, S., Poehlein, A., Daniel, R., Frei, D., Segessemann, T., Zimmerman, J., Marinos, G., Kaleta, C., Jehmlich, N., Ahrens, C.H., von Bergen, M. (2021):
  Discovery of novel community-relevant small proteins in a simplified human intestinal microbiome
  Microbiome 9 , art. 55 10.1186/s40168-020-00981-z
• Sallam, I.E., Abdelwareth, A., Attia, H., Aziz, R.K., Homsi, M.N., von Bergen, M., Farag, M.A. (2021):
  Effect of gut microbiota biotransformation on dietary tannins and human health implications
  Microorganisms 9 (5), art. 965 10.3390/microorganisms9050965
• Schaffert, A., Arnold, J., Karkossa, I., Blüher, M., von Bergen, M., Schubert, K. (2021):
  The emerging plasticizer alternative DINCH and its metabolite MINCH induce oxidative stress and enhance inflammatory responses in human THP-1 macrophages
  Cells 10 (9), art. 2367 10.3390/cells10092367
• Schaffert, A., Krieg, L., Weiner, J., Schlichting, R., Ueberham, E., Karkossa, I., Bauer, M., Landgraf, K., Junge, K.M., Wabitsch, M., Lehmann, J., Escher, B.I., Zenclussen, A.C., Körner, A., Blüher, M., Heiker, J.T., von Bergen, M., Schubert, K. (2021):
  Alternatives for the worse: Molecular insights into adverse effects of bisphenol a and substitutes during human adipocyte differentiation
  Environ. Int. 156 , art. 106730 10.1016/j.envint.2021.106730
• Schaffert, A., Krieg, L., Weinert, J., Schlichting, R., Ueberham, E., Karkossa, I., Bauer, M., Junge, K., Wabitsch, M., Lehmann, J., Escher, B.I., Zenclussen, A.C., Körner, A., Blüher, M., Heiker, J.T., von Bergen, M., Schubert, K. (2021):
  Emerging substitutes of BPA cause inflammation-like state and impaired insulin sensitivity in differentiating human adipocytes
  Toxicol. Lett. 350 (Suppl.), S130 10.1016/S0378-4274(21)00552-X
• Schubert, K., Karkossa, I., Schor, J., Engelmann, B., Steinheuer, L.M., Bruns, T., Rolle-Kampczyk, U., Hackermüller, J., von Bergen, M. (2021):
  A multi-omics analysis of mucosal-associated-invariant T cells reveals key drivers of distinct modes of activation
  Front. Immunol. 12 , art. 616967 10.3389/fimmu.2021.616967
• Shahid, N., Rolle-Kampczyk, U., Siddique, A., von Bergen, M., Liess, M. (2021):
  Pesticide-induced metabolic changes are amplified by food stress
  Sci. Total Environ. 792 , art. 148350 10.1016/j.scitotenv.2021.148350
• Smith, L., Martin, C., Lasserre, F., Engelmann, B., Klément, W., Fougerat, A., Polizzi, A., Canlet, C., Rolle-Kampczyk, U., von Bergen, M., Lippi, Y., Guillou, H., Loiseau, N., Payastre, L., Ellero-Simatos, S. (2021):
  Impact d’une exposition alimentaire chronique au glyphosate à des doses de référence sur le microbiote intestinal et le métabolisme énergétique chez la souris
  Nutr. Clin. Metab. 35 (1), 74 - 74 10.1016/j.nupar.2021.01.110
• Starke, R., Schäpe, S.S., Jehmlich, N., von Bergen, M. (2021):
  Protein stable isotope probing with H₂¹⁸O differentiated cold stress response at permissive temperatures from general growth at optimal conditions in Escherichia coli K12
  Rapid Commun. Mass Spectrom. 35 (1), e8941 10.1002/rcm.8941
• Streidl, T., Karkossa, I., Segura Muñoz, R.R., Eberl, C., Zaufel, A., Plagge, J., Schmaltz, R., Schubert, K., Basic, M., Schneider, K.M., Afify, M., Trautwein, C., Tolba, R., Stecher, B., Doden, H.L., Ridlon, J.M., Ecker, J., Moustafa, T., von Bergen, M., Ramer-Tait, A.E., Clavel, T. (2021):
  The gut bacterium Extibacter muris produces secondary bile acids and influences liver physiology in gnotobiotic mice
  Gut Microbes 13 (1), 1 - 21 10.1080/19490976.2020.1854008
• Thürmann, L., Herberth, G., Seiwert, B., Schlittenbauer, L., Rolle-Kampczyk, U., Röder, S., Sack, U., Borte, M., von Bergen, M., Trump, S., Reemtsma, T., Lehmann, I. (2021):
  Prenatal paraben exposure and atopic dermatitis-related outcomes among children
  Allergy 76 (10), 3122 - 3132 10.1111/all.14890
• Tsaban, G., Meir, A.Y., Rinott, E., Zelicha, H., Kaplan, A., Shalev, A., Katz, A., Rudich, A., Tirosh, A., Shelef, I., Youngster, I., Lebovitz, S., Israeli, N., Shabat, M., Brikner, D., Pupkin, E., Stumvoll, M., Thiery, J., Ceglarek, U., Heiker, J.T., Körner, A., Landgraf, K., von Bergen, M., Blüher, M., Stampfer, M.J., Shai, I. (2021):
  The effect of green Mediterranean diet on cardiometabolic risk; a randomised controlled trial
  Heart 107 (13), 1054 - 1061 10.1136/heartjnl-2020-317802
• Van Den Bossche, T., Kunath, B.J., Schallert, K., Schäpe, S.S., Abraham, P.E., Armengaud, J., Arntzen, M.Ø., Bassignani, A., Benndorf, D., Fuchs, S., Giannone, R.J., Griffin, T.J., Hagen, L.H., Halder, R., Henry, C., Hettich, R.L., Heyer, R., Jagtap, P., Jehmlich, N., Jensen, M., Juste, C., Kleiner, M., Langella, O., Lehmann, T., Leith, E., May, P., Mesuere, B., Miotello, G., Peters, S.L., Pible, O., Queiros, P.T., Reichl, U., Renard, B.Y., Schiebenhoefer, H., Sczyrba, A., Tanca, A., Trappe, K., Trezzi, J.-P., Uzzau, S., Verschaffelt, P., von Bergen, M., Wilmes, P., Wolf, M., Martens, L., Muth, T. (2021):
  Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows
  Nat. Commun. 12 , art. 7305 10.1038/s41467-021-27542-8
• Venkat, K., Hoyos, M., Haycocks, J.R.J., Cassidy, L., Engelmann, B., Rolle-Kampczyk, U., von Bergen, M., Tholey, A., Grainger, D.C., Papenfort, K. (2021):
  A dual-function RNA balances carbon uptake and central metabolism in Vibrio cholerae
  Embo J. 40 (24), e108542 10.15252/embj.2021108542
• Walter, K., Grosskopf, H., Karkossa, I., von Bergen, M., Schubert, K. (2021):
  Proteomic characterization of the cellular effects of AhR activation by microbial tryptophan catabolites in endotoxin-activated human macrophages
  Int. J. Environ. Res. Public Health 18 (19), 10336 10.3390/ijerph181910336
• Wang, Z., Karkossa, I., Großkopf, H., Canzler, S., Rolle-Kampczyk, U., Hackermüller, J., von Bergen, M., Schubert, K. (2021):
  Quantitative proteomics reveal mechanistic insights into direct and indirect drug-induced thyroid toxicity in rats
  Toxicol. Lett. 350 (Suppl.), S129 10.1016/S0378-4274(21)00550-6
• Warmt, E., Grosser, S., Blauth, E., Xie, X., Kubitschke, H., Stange, R., Sauer, F., Schnauß, J., Tomm, J.M., von Bergen, M., Käs, J.A. (2021):
  Differences in cortical contractile properties between healthy epithelial and cancerous mesenchymal breast cells
  New J. Phys. 23 (10), art. 103020 10.1088/1367-2630/ac254e
• Yaskolka Meir, A., Tuohy, K., von Bergen, M., Krajmalnik-Brown, R., Heinig, U., Zelicha, H., Tsaban, G., Rinott, E., Kaplan, A., Aharoni, A., Zeibich, L., Chang, D., Dirks, B., Diotallevi, C., Arapitsas, P., Vrhovsek, U., Ceglarek, U., Haange, S.-B., Rolle-Kampczyk, U., Engelmann, B., Lapidot, M., Colt, M., Sun, Q., Shai, I. (2021):
  The metabolomic-gut-clinical axis of Mankai plant-derived dietary polyphenols
  Nutrients 13 (6), art. 1866 10.3390/nu13061866

2020 (31)

• Bannuscher, A., Karkossa, I., Buhs, S., Nollau, P., Kettler, K., Balas, M., Dinischiotu, A., Hellack, B., Wiemann, M., Luch, A., von Bergen, M., Haase, A., Schubert, K. (2020):
  A multi-omics approach reveals mechanisms of nanomaterial toxicity and structure–activity relationships in alveolar macrophages
  Nanotoxicology 14 (2), 181 - 195 10.1080/17435390.2019.1684592
• Canzler, S., Schor, J., Busch, W., Schubert, K., Rolle-Kampczyk, U.E., Seitz, H., Kamp, H., von Bergen, M., Buesen, R., Hackermüller, J. (2020):
  Prospects and challenges of multi‑omics data integration in toxicology
  Arch. Toxicol. 94 (2), 371 - 388 10.1007/s00204-020-02656-y
• Dey, P., Malik, A., Mishra, A., Singh, D.K., von Bergen, M., Jehmlich, N. (2020):
  Mechanistic insight to mycoremediation potential of a metal resistant fungal strain for removal of hazardous metals from multimetal pesticide matrix
  Environ. Pollut. 262 , art. 114255 10.1016/j.envpol.2020.114255
• Farag, M.A., Abdelwareth, A., Sallam, I.E., el Shorbagi, M., Jehmlich, N., Fritz, K., Schaepe, S., Rolle-Kampczyk, U., Ehrlich, A., Wessjohann, L.A., von Bergen, M. (2020):
  Metabolomics reveals impact of seven functional foods on metabolic pathways in a gut microbiota model
  J. Adv. Res. 23 , 47 - 59 10.1016/j.jare.2020.01.001
• Fritz-Wallace, K., Engelmann, B., Krause, J.L., Schäpe, S.S., Pöppe, J., Herberth, G., Rösler, U., Jehmlich, N., von Bergen, M., Rolle-Kampczyk, U. (2020):
  Quantification of glyphosate and AMPA from microbiome reactor fluids
  Rapid Commun. Mass Spectrom. 34 (7), e8668 10.1002/rcm.8668
• Haange, S.-B., Groeger, N., Froment, J., Rausch, T., Burkhardt, W., Gonnermann, S., Braune, A., Blaut, M., von Bergen, M., Rolle-Kampczyk, U. (2020):
  Multiplexed quantitative assessment of the fate of taurine and sulfoquinovose in the intestinal microbiome
  Metabolites 10 (11), art. 430 10.3390/metabo10110430
• Haange, S.-B., Jehmlich, N., Krügel, U., Hintschich, C., Wehrmann, D., Hankir, M., Seyfried, F., Froment, J., Hübschmann, T., Müller, S., Wissenbach, D.K., Kang, K.H., Buettner, C., Panagiotou, G., Noll, M., Rolle-Kampczyk, U., Fenske, W., von Bergen, M. (2020):
  Gastric bypass surgery in a rat model alters the community structure and functional composition of the intestinal microbiota independently of weight loss
  Microbiome 8 , art. 13 10.1186/s40168-020-0788-1
• Hsu, M.-J., Karkossa, I., Schäfer, I., Christ, M., Kühne, H., Schubert, K., Rolle-Kampczyk, U.E., Kalkhof, S., Nickel, S., Seibel, P., von Bergen, M., Christ, B. (2020):
  Mitochondrial transfer by human mesenchymal stromal cells ameliorates hepatocyte lipid load in a mouse model of NASH
  Biomedicines 8 (9), art. 350 10.3390/biomedicines8090350
• Jacoby, C., Krull, J., Andexer, J., Jehmlich, N., von Bergen, M., Brüls, T., Boll, M. (2020):
  Channeling C1 metabolism toward S-adenosylmethionine-dependent conversion of estrogens to androgens in estrogen-degrading bacteria
  mBio 11 (4), e01259-20 10.1128/mBio.01259-20
• Kalkhof, S., Krieg, L., Büttner, P., Wabitsch, M., Küntzel, C., Friebe, D., Landgraf, K., Hanschkow, M., Schubert, K., Kiess, W., Krohn, K., Blüher, M., von Bergen, M., Körner, A. (2020):
  In depth quantitative proteomic and transcriptomic characterization of human adipocyte differentiation using the SGBS cell line
  Proteomics 20 (15-16), art. 1900405 10.1002/pmic.201900405
• Karkossa, I., Raps, S., von Bergen, M., Schubert, K. (2020):
  Systematic review of multi-omics approaches to investigate toxicological effects in macrophages
  Int. J. Mol. Sci. 21 (24), art. 9371 10.3390/ijms21249371
• Krause, J.L., Haange, S.-B., Schäpe, S.S., Engelmann, B., Rolle-Kampczyk, U., Fritz-Wallace, K., Wang, Z., Jehmlich, N., Türkowsky, D., Schubert, K., Pöppe, J., Bote, K., Rösler, U., Herberth, G., von Bergen, M. (2020):
  The glyphosate formulation Roundup^® LB plus influences the global metabolome of pig gut microbiota in vitro
  Sci. Total Environ. 745 , art. 140932 10.1016/j.scitotenv.2020.140932
• Krause, J.L., Schaepe, S.S., Fritz-Wallace, K., Engelmann, B., Rolle-Kampczyk, U., Kleinsteuber, S., Schattenberg, F., Liu, Z., Müller, S., Jehmlich, N., von Bergen, M., Herberth, G. (2020):
  Following the community development of SIHUMIx – a new intestinal in vitro model for bioreactor use
  Gut Microbes 11 (4), 1116 - 1129 10.1080/19490976.2019.1702431
• Krause, J.L., Schäpe, S.S., Schattenberg, F., Müller, S., Ackermann, G., Rolle-Kampczyk, U.E., Jehmlich, N., Pierzchalski, A., von Bergen, M., Herberth, G. (2020):
  The activation of mucosal-associated invariant T (MAIT) cells is affected by microbial diversity and riboflavin utilization in vitro
  Front. Microbiol. 11 , art. 755 10.3389/fmicb.2020.00755
• Krieg, L., Schaffert, A., Kern, M., Landgraf, K., Wabitsch, M., Beck-Sickinger, A.G., Koerner, A., Blüher, M., von Bergen, M., Schubert, K. (2020):
  An MRM-based multiplexed quantification assay for human adipokines and apolipoproteins
  Molecules 25 (4), art. 775 10.3390/molecules25040775
• Leppert, B., Strunz, S., Seiwert, B., Schlittenbauer, L., Schlichting, R., Pfeifer, C., Röder, S., Bauer, M., Borte, M., Stangl, G.I., Schöneberg, T., Schulz, A., Karkossa, I., Rolle-Kampczyk, U.E., Thürmann, L., von Bergen, M., Escher, B.I., Junge, K.M., Reemtsma, T., Lehmann, I., Polte, T. (2020):
  Maternal paraben exposure triggers childhood overweight development
  Nat. Commun. 11 , art. 561 10.1038/s41467-019-14202-1
• Lohmann, P., Benk, S., Gleixner, G., Potthast, K., Michalzik, B., Jehmlich, N., von Bergen, M. (2020):
  Seasonal patterns of dominant microbes involved in central nutrient cycles in the subsurface
  Microorganisms 8 (11), art. 1694 10.3390/microorganisms8111694
• Lohmann, P., Schäpe, S.S., Haange, S.-B., Oliphant, K., Allen-Vercoe, E., Jehmlich, N., von Bergen, M. (2020):
  Function is what counts: how microbial community complexity affects species, proteome and pathway coverage in metaproteomics
  Expert Rev. Proteomics 17 (2), 163 - 173 10.1080/14789450.2020.1738931
• Mahdi, D.H., Wissenbach, D.K., von Bergen, M., Vissiennon, Z., Chougourou, D., Nieber, K., Ahyi, V., Vissiennon, C. (2020):
  Ethnomedicinal survey and in vitro confirmation of anti-inflammatory and antispasmodic properties of the termite strain Macrotermes bellicosus used in traditional medicine in the Republic of Benin
  J. Ethnopharmacol. 254 , art. 112705 10.1016/j.jep.2020.112705
• Massier, L., Chakaroun, R., Tabei, S., Crane, A., Didt, K.D., Fallmann, J., von Bergen, M., Haange, S.-B., Heyne, H., Stumvoll, M., Gericke, M., Dietrich, A., Blüher, M., Musat, N., Kovacs, P. (2020):
  Adipose tissue derived bacteria are associated with inflammation in obesity and type 2 diabetes
  Gut 69 (10), 1796 - 1806 10.1136/gutjnl-2019-320118
• Mendler, A., Geier, F., Haange, S.-B., Pierzchalski, A., Krause, J.L., Nijenhuis, I., Froment, J., Jehmlich, N., Berger, U., Ackermann, G., Rolle-Kampczyk, U., von Bergen, M., Herberth, G. (2020):
  Mucosal-associated invariant T-Cell (MAIT) activation is altered by chlorpyrifos- and glyphosate-treated commensal gut bacteria
  J. Immunotoxicol. 17 (1), 10 - 20 10.1080/1547691X.2019.1706672
• Mendler, A., Pierzchalski, A., Bauer, M., Röder, S., Sattler, A., Standl, M., Borte, M., von Bergen, M., Rolle-Kampczyk, U., Herberth, G. (2020):
  MAIT cell activation in adolescents is impacted by bile acid concentrations and body weight
  Clin. Exp. Immunol. 200 (2), 199 - 213 10.1111/cei.13423
• Meyer-Cifuentes, I., Gruhl, S., Haange, S.-B., Lünsmann, V., Jehmlich, N., von Bergen, M., Heipieper, H.J., Müller, J.A. (2020):
  Benzylsuccinate synthase is post-transcriptionally regulated in the toluene-degrading denitrifier Magnetospirillum sp. strain 15-1
  Microorganisms 8 (5), art. 681 10.3390/microorganisms8050681
• Pereira, F.C., Wasmund, K., Cobankovic, I., Jehmlich, N., Herbold, C.W., Lee, K.S., Sziranyi, B., Vesely, C., Decker, T., Stocker, R., Warth, B., von Bergen, M., Wagner, M., Berry, D. (2020):
  Rational design of a microbial consortium of mucosal sugar utilizers reduces Clostridiodes difficile colonization
  Nat. Commun. 11 , art. 5104 10.1038/s41467-020-18928-1
• Petruschke, H., Anders, J., Stadler, P.F., Jehmlich, N., von Bergen, M. (2020):
  Enrichment and identification of small proteins in a simplified human gut microbiome
  J. Proteomics 213 , art. 103604 10.1016/j.jprot.2019.103604
• Riba, A., Hassani, K., Walker, A., van Best, N., von Zeschwitz, D., Anslinger, T., Sillner, N., Rosenhain, S., Eibach, D., Maiga-Ascofaré, O., Rolle-Kampczyk, U., Basic, M., Binz, A., Mocek, S., Sodeik, B., Bauerfeind, R., Mohs, A., Trautwein, C., Kiessling, F., May, J., Klingenspor, M., Gremse, F., Schmitt-Kopplin, P., Bleich, A., Torow, N., von Bergen, M., Hornef, M.W. (2020):
  Disturbed gut microbiota and bile homeostasis in Giardia-infected mice contributes to metabolic dysregulation and growth impairment
  Sci. Transl. Med. 12 (565), eaay7019 10.1126/scitranslmed.aay7019
• Rolle-Kampczyk, U., Gebauer, S., Haange, S.-B., Schubert, K., Kern, M., Moulla, Y., Dietrich, A., Schön, M.R., Klöting, N., von Bergen, M., Blüher, M. (2020):
  Accumulation of distinct persistent organic pollutants is associated with adipose tissue inflammation
  Sci. Total Environ. 748 , art. 142458 10.1016/j.scitotenv.2020.142458
• Schäpe, S.S., Krause, J.L., Masanetz, R.K., Riesbeck, S., Starke, R., Rolle-Kampczyk, U., Eberlein, C., Heipieper, H.J., Herberth, G., von Bergen, M., Jehmlich, N. (2020):
  Environmentally relevant concentration of bisphenol S shows slight effects on SIHUMIx
  Microorganisms 8 (9), art. 1436 10.3390/microorganisms8091436
• Starke, R., Oliphant, K., Jehmlich, N., Schäpe, S.S., Sachsenberg, T., Kohlbacher, O., Allen-Vercoe, E., von Bergen, M. (2020):
  Tracing incorporation of heavy water into proteins for species-specific metabolic activity in complex communities
  J. Proteomics 222 , art. 103791 10.1016/j.jprot.2020.103791
• van Best, N., Rolle-Kampczyk, U., Schaap, F.G., Basic, M., Olde Damink, S.W.M., Bleich, A., Savelkoul, P.H.M., von Bergen, M., Penders, J., Hornef, M.W. (2020):
  Bile acids drive the newborn’s gut microbiota maturation
  Nat. Commun. 11 , art. 3692 10.1038/s41467-020-17183-8
• Wang, Z., Karkossa, I., Großkopf, H., Rolle-Kampczyk, U., Hackermüller, J., von Bergen, M., Schubert, K. (2020):
  Comparison of quantitation methods in proteomics to define relevant toxicological information on AhR activation of HepG2 cells by BaP
  Toxicology 448 , art. 152652 10.1016/j.tox.2020.152652

2019 (25)

• Anselmann, S.E.L., Löffler, C., Stärk, H.-J., Jehmlich, N., von Bergen, M., Brüls, T., Boll, M. (2019):
  The class II benzoyl‐coenzyme A reductase complex from the sulfate‐reducing Desulfosarcina cetonica
  Environ. Microbiol. 21 (11), 4241 - 4252 10.1111/1462-2920.14784
• Buettner, C., von Bergen, M., Jehmlich, N., Noll, M. (2019):
  Pseudomonas spp. are key players in agricultural biogas substrate degradation
  Sci. Rep. 9 , art. 12871 10.1038/s41598-019-49313-8
• Engel, K.M., Baumann, S., Rolle-Kampczyk, U., Schiller, J., von Bergen, M., Grunewald, S. (2019):
  Metabolomic profiling reveals correlations between spermiogram parameters and the metabolites present in human spermatozoa and seminal plasma
  PLOS One 14 (2), e0211679 10.1371/journal.pone.0211679
• Geiger, R.A., Junghare, M., Mergelsberg, M., Ebenau‐Jehle, C., Jesenofsky, V.J., Jehmlich, N., von Bergen, M., Schink, B., Boll, M. (2019):
  Enzymes involved in phthalate degradation in sulphate‐reducing bacteria
  Environ. Microbiol. 21 (10), 3601 - 3612 10.1111/1462-2920.14681
• Großkopf, H., Schubert, K., von Bergen, M. (2019):
  AhR-dependent non-genomic signaling in macrophages - A multi-PTM-omics and proteomics study
  Eur. J. Immunol. 49 (Suppl. 1), 137 10.1002/eji.201970300
• Haange, S.-B., Jehmlich, N., Hoffmann, M., Weber, K., Lehmann, J., von Bergen, M., Slanina, J. (2019):
  Disease development is accompanied by changes in bacterial protein abundance and functions in a refined model of dextran sulfate sodium (DSS)-induced colitis
  J. Proteome Res. 18 (4), 1774 - 1786 10.1021/acs.jproteome.8b00974
• Haange, S.-B., Jehmlich, N., Jacobi, T., von Bergen, M. (2019):
  Chancen und Risiken von Metaproteomik in der Mikrobiomforschung. Opportunities and pitfalls of metaproteomics in microbiome research
  Adipositas - Ursachen, Folgeerkrankungen, Therapie 13 (4), 205 - 213 10.1055/a-0966-9652
• Huwiler, S.G., Löffler, C., Anselmann, S.E.L., Stärk, H.-J., von Bergen, M., Flechsler, J., Rachel, R., Boll, M. (2019):
  One-megadalton metalloenzyme complex in Geobacter metallireducens involved in benzene ring reduction beyond the biological redox window
  Proc. Natl. Acad. Sci. U.S.A. 116 (6), 2259 - 2264 10.1073/pnas.1819636116
• Karkossa, I., Bannuscher, A., Hellack, B., Bahl, A., Buhs, S., Nollau, P., Luch, A., Schubert, K., von Bergen, M., Haase, A. (2019):
  An in-depth multi-omics analysis in RLE-6TN rat alveolar epithelial cells allows for nanomaterial categorization
  Part. Fibre Toxicol. 16 (1), art. 38 10.1186/s12989-019-0321-5
• Ke, X., Walker, A., Haange, S.-B., Lagkouvardos, I., Liu, Y., Schmitt-Kopplin, P., von Bergen, M., Jehmlich, N., He, X., Clavel, T., Cheung, P.C.K. (2019):
  Synbiotic-driven improvement of metabolic disturbances is associated with changes in the gut microbiome in diet-induced obese mice
  Mol. Metab. 22 , 96 - 109 10.1016/j.molmet.2019.01.012
• Kratochvil, I., Bannuscher, A., Hellack, B., von Bergen, M., Haase, A., Schubert, K. (2019):
  Nanomaterials affect oxidative phosphorylation and phagocytosis in alveolar macrophages
  Eur. J. Immunol. 49 (Suppl. 1), 232 10.1002/eji.201970300
• Kratochvil, I., Hofmann, T., Rother, S., Schlichting, R., Moretti, R., Scharnweber, D., Hintze, V., Escher, B.I., Meiler, J., Kalkhof, S., von Bergen, M. (2019):
  Mono(2‐ethylhexyl) phthalate (MEHP) and mono(2‐ethyl‐5‐oxohexyl) phthalate (MEOHP) but not di(2‐ethylhexyl) phthalate (DEHP) bind productively to the peroxisome proliferator‐activated receptor γ
  Rapid Commun. Mass Spectrom. 33 (S1), 75 - 85 10.1002/rcm.8258
• Küster, E., Kalkhof, S., Aulhorn, S., von Bergen, M., Gündel, U. (2019):
  Effects of five substances with different modes of action on cathepsin H, C and L activities in zebrafish embryos
  Int. J. Environ. Res. Public Health 16 (20), art. 3956 10.3390/ijerph16203956
• Mandić, A.D., Woting, A., Jaenicke, T., Sander, A., Sabrowski, W., Rolle-Kampczyk, U., von Bergen, M., Blaut, M. (2019):
  Clostridium ramosum regulates enterochromaffin cell development and serotonin release
  Sci. Rep. 9 , art. 1177 10.1038/s41598-018-38018-z
• Mueller, A., Ulrich, N., Hollmann, J., Zapata Sanchez, C.E., Rolle-Kampczyk, U.E., von Bergen, M. (2019):
  Characterization of a multianalyte GC-MS/MS procedure for detecting and quantifying polycyclic aromatic hydrocarbons (PAHs) and PAH derivatives from air particulate matter for an improved risk assessment
  Environ. Pollut. 255 (Part 2), art. 112967 10.1016/j.envpol.2019.112967
• Ordiz, M.I., Semba, R.D., Moaddel, R., Rolle-Kampczyk, U., von Bergen, M., Herberth, G., Khadeer, M., Röder, S., Manary, M.J. (2019):
  Serum amino acid concentrations in infants from Malawi are associated with linear growth
  Curr. Dev. Nutr. 3 (10), nzz100 10.1093/cdn/nzz100
• Schäpe, S.S., Krause, J.L., Engelmann, B., Fritz-Wallace, K., Schattenberg, F., Liu, Z., Müller, S., Jehmlich, N., Rolle-Kampczyk, U., Herberth, G., von Bergen, M. (2019):
  The simplified human intestinal microbiota (SIHUMIx) shows high structural and functional resistance against changing transit times in in vitro bioreactors
  Microorganisms 7 (12), art. 641 10.3390/microorganisms7120641
• Schmidt, J.R., Geurtzen, K., von Bergen, M., Schubert, K., Knopf, F. (2019):
  Glucocorticoid treatment leads to aberrant ion and macromolecular transport in regenerating zebrafish fins
  Front. Endocrinol. 10 , art. 674 10.3389/fendo.2019.00674
• Schmidt, J.R., Vogel, S., Moeller, S., Kalkhof, S., Schubert, K., von Bergen, M., Hempel, U. (2019):
  Sulfated hyaluronic acid and dexamethasone possess a synergistic potential in the differentiation of osteoblasts from human bone marrow stromal cells
  J. Cell. Biochem. 120 (5), 8706 - 8722 10.1002/jcb.28158
• Schubert, K., Schor, J., Kratochvil, I., Hackermüller, J., von Bergen, M. (2019):
  Multi-omics profiling of MAIT cells reveals specific patterns of antigen-dependent and -independent activation
  Eur. J. Immunol. 49 (Suppl. 1), 141 10.1002/eji.201970300
• Taubert, M., Grob, C., Crombie, A., Howat, A.M., Burns, O.J., Weber, M., Lott, C., Kaster, A.-K., Vollmers, J., Jehmlich, N., von Bergen, M., Chen, Y., Murrell, J.C. (2019):
  Communal metabolism by Methylococcaceae and Methylophilaceae is driving rapid aerobic methane oxidation in sediments of a shallow seep near Elba, Italy
  Environ. Microbiol. 21 (10), 3780 - 3795 10.1111/1462-2920.14728
• Thürmann, L., Herberth, G., Rolle-Kampczyk, U., Röder, S., Borte, M., von Bergen, M., Lehmann, I., Trump, S. (2019):
  Elevated gestational IL-13 during fetal development is associated with hyperactivity and inattention in eight-year-old children
  Front. Immunol. 10 , art. 1658 10.3389/fimmu.2019.01658
• Türkowsky, D., Lohmann, P., Mühlenbrink, M., Schubert, T., Adrian, L., Goris, T., Jehmlich, N., von Bergen, M. (2019):
  Thermal proteome profiling allows quantitative assessment of interactions between tetrachloroethene reductive dehalogenase and trichloroethene
  J. Proteomics 192 , 10 - 17 10.1016/j.jprot.2018.05.018
• Tveit, A.T., Hestnes, A.G., Robinson, S.L., Schintlmeister, A., Dedysh, S.N., Jehmlich, N., von Bergen, M., Herbold, C., Wagner, M., Richter, A., Svenning, M.M. (2019):
  Widespread soil bacterium that oxidizes atmospheric methane
  Proc. Natl. Acad. Sci. U.S.A. 116 (17), 8515 - 8524 10.1073/pnas.1817812116
• Wieczorek, A.S., Schmidt, O., Chatzinotas, A., von Bergen, M., Gorissen, A., Kolb, S. (2019):
  Ecological functions of agricultural soil bacteria and microeukaryotes in chitin degradation: A case study
  Front. Microbiol. 10 , art. 1293 10.3389/fmicb.2019.01293

2018 (21)

• Bulitta, B., Zuschratter, W., Bernal, I., Bruder, D., Klawonn, F., von Bergen, M., Garritsen, H.S.P., Jänsch, L. (2018):
  Proteomic definition of human mucosal‐associated invariant T cells determines their unique molecular effector phenotype
  Eur. J. Immunol. 48 (8), 1336 - 1349 10.1002/eji.201747398
• Campoy, C., Cerdó, T., Ruiz, A., Jauregui, R., von Bergen, M., Suarez, A. (2018):
  Maternal pre-pregnancy body mass index imprints a gut microbial community composition with a specific functionality
  Ann. Nutr. Metab. 73 (Suppl. 2), 55 10.1159/000490752
• Cerdó, T., Ruiz, A., Acuña, I., Jáuregui, R., Jehmlich, N., Haange, S.-B., von Bergen, M., Suárez, A., Campoy, C. (2018):
  Gut microbial functional maturation and succession during human early life
  Environ. Microbiol. 20 (6), 2160 - 2177 10.1111/1462-2920.14235
• Chupani, L., Niksirat, H., Lünsmann, V., Haange, S.-B., von Bergen, M., Jehmlich, N., Zuskova, E. (2018):
  Insight into the modulation of intestinal proteome of juvenile common carp (Cyprinus carpio L.) after dietary exposure to ZnO nanoparticles
  Sci. Total Environ. 613-614 , 62 - 71 10.1016/j.scitotenv.2017.08.129
• Firacative, C., Gressler, A.E., Schubert, K., Schulze, B., Müller, U., Brombacher, F., von Bergen, M., Alber, G. (2018):
  Identification of T helper (Th)1- and Th2-associated antigens of Cryptococcus neoformans in a murine model of pulmonary infection
  Sci. Rep. 8 , art. 2681 10.1038/s41598-018-21039-z
• Floegel, A., Kühn, T., Sookthai, D., Johnson, T., Prehn, C., Rolle-Kampczyk, U., Otto, W., Weikert, C., Illig, T., von Bergen, M., Adamski, J., Boeing, H., Kaaks, R., Pischon, T. (2018):
  Serum metabolites and risk of myocardial infarction and ischemic stroke: a targeted metabolomic approach in two German prospective cohorts
  Eur. J. Epidemiol. 33 (1), 55 - 66 10.1007/s10654-017-0333-0
• Herbst, F.-A., Jehmlich, N., von Bergen, M., Schmidt, F. (2018):
  Sulfur-³⁴S and ³⁶S stable isotope labeling of amino acids for quantification (SULAQ_34/36) of proteome analyses
  In: Becher, D. (ed.)
  Microbial proteomics : methods and protocols
  Methods in Molecular Biology 1841
  Springer Nature, p. 163 - 174 10.1007/978-1-4939-8695-8_12
• Hintze, V., Rother, S., Köhler, L., Hempel, U., Anderegg, U., Pisabarro, M.T., Hofbauer, L., Schnabelrauch, M., Franz, S., von Bergen, M., Simon, J., Scharnweber, D. (2018):
  Glycosaminoglycan derivatives - functional nanostructures modulating healing processes in bone and skin
  FEBS Open Bio 8 (S1), 50 - 50 10.1002/2211-5463.12449
• Iqbal, K., Dietrich, S., Wittenbecher, C., Krumsiek, J., Kühn, T., Lacruz, M.E., Kluttig, A., Prehn, C., Adamski, J., von Bergen, M., Kaaks, R., Schulze, M.B., Boeing, H., Floegel, A. (2018):
  Comparison of metabolite networks from four German population-based studies
  Int. J. Epidemiol. 47 (6), 2070 - 2081 10.1093/ije/dyy119
• Jahreis, S., Trump, S., Bauer, M., Bauer, T., Thürmann, L., Feltens, R., Wang, Q., Gu, L., Grützmann, K., Röder, S., Averbeck, M., Weichenhan, D., Plass, C., Sack, U., Borte, M., Dubourg, V., Schüürmann, G., Simon, J.C., von Bergen, M., Hackermüller, J., Eils, R., Lehmann, I., Polte, T. (2018):
  Maternal phthalate exposure promotes allergic airway inflammation over 2 generations through epigenetic modifications
  J. Allergy Clin. Immunol. 141 (2), 741 - 753 10.1016/j.jaci.2017.03.017
• Junge, K.M., Leppert, B., Jahreis, S., Wissenbach, D.K., Feltens, R., Grützmann, K., Thürmann, L., Bauer, T., Ishaque, N., Schick, M., Bewerunge-Hudler, M., Röder, S., Bauer, M., Schulz, A., Borte, M., Landgraf, K., Körner, A., Kiess, W., von Bergen, M., Stangl, G.I., Trump, S., Eils, R., Polte, T., Lehmann, I. (2018):
  MEST mediates the impact of prenatal bisphenol A exposure on long-term body weight development
  Clin. Epigenetics 10 , art. 58 10.1186/s13148-018-0478-z
• Korkmaz, A.G., Popov, I., Peisl, L., Codrea, M.C., Nahnsen, S., Steimle, A., Velic, A., Macek, B., von Bergen, M., Bernhardt, J., Frick, J.S. (2018):
  Proteome and phosphoproteome analysis of commensally induced dendritic cell maturation states
  J. Proteomics 180 , 11 - 24 10.1016/j.jprot.2017.11.008
• Lechner, U., Türkowsky, D., Dinh, T.T.H., Al-Fathi, H., Schwoch, S., Franke, S., Gerlach, M.-S., Koch, M., von Bergen, M., Jehmlich, N., Dang, T.C.H. (2018):
  Desulfitobacterium contributes to the microbial transformation of 2,4,5‐T by methanogenic enrichment cultures from a Vietnamese active landfill
  Microb. Biotechnol. 11 (6), 1137 - 1156 10.1111/1751-7915.13301
• Russo, R., Haange, S.-B., Rolle-Kampczyk, U., von Bergen, M., Becker, J.M., Liess, M. (2018):
  Identification of pesticide exposure-induced metabolic changes in mosquito larvae
  Sci. Total Environ. 643 , 1533 - 1541 10.1016/j.scitotenv.2018.06.282
• Schmidt, J.R., Rücker-Braun, E., Heidrich, K., von Bonin, M., Stölzel, F., Thiede, C., Middeke, J.M., Ehninger, G., Bornhäuser, M., Schetelig, J., Schubert, K., von Bergen, M., Heidenreich, F. (2018):
  Pilot study on mass spectrometry–based analysis of the proteome of CD34⁺CD123⁺ progenitor cells for the identification of potential targets for immunotherapy in acute myeloid leukemia
  Proteomes 6 (1), art. 11 10.3390/proteomes6010011
• Taubert, M., Stöckel, S., Geesink, P., Girnus, S., Jehmlich, N., von Bergen, M., Rösch, P., Popp, J., Küsel, K. (2018):
  Tracking active groundwater microbes with D₂O labelling to understand their ecosystem function
  Environ. Microbiol. 20 (1), 369 - 384 10.1111/1462-2920.14010
• Thabet, A., Schmidt, J., Baumann, S., Honscha, W., von Bergen, M., Daugschies, A., Bangoura, B. (2018):
  Resistance towards monensin is proposed to be acquired in a Toxoplasma gondii model by reduced invasion and egress activities, in addition to increased intracellular replication
  Parasitology 145 (3), 313 - 325 10.1017/S0031182017001512
• Thürmann, L., Grützmann, K., Klös, M., Bieg, M., Winter, M., Polte, T., Bauer, T., Schick, M., Bewerunge-Hudler, M., Röder, S., Bauer, M., Wissenbach, D.K., Sack, U., Weichenhan, D., Mücke, O., Plass, C., Borte, M., von Bergen, M., Lehmann, I., Eils, R., Trump, S. (2018):
  Early-onset childhood atopic dermatitis is related to NLRP2 repression
  J. Allergy Clin. Immunol. 141 (4), 1482 - 1485.e16 10.1016/j.jaci.2017.11.018
• Türkowsky, D., Esken, J., Goris, T., Schubert, T., Diekert, G., Jehmlich, N., von Bergen, M. (2018):
  A retentive memory of tetrachloroethene respiration in Sulfurospirillum halorespirans - involved proteins and a possible link to acetylation of a two-component regulatory system
  J. Proteomics 181 , 36 - 46 10.1016/j.jprot.2018.03.030
• Türkowsky, D., Jehmlich, N., Diekert, G., Adrian, L., von Bergen, M., Goris, T. (2018):
  An integrative overview of genomic, transcriptomic and proteomic analyses in organohalide respiration research
  FEMS Microbiol. Ecol. 94 (3), fiy013 10.1093/femsec/fiy013
• Zecchin, S., Mueller, R.C., Seifert, C., Stingl, U., Anantharaman, K., von Bergen, M., Cavalca, L., Pester, M. (2018):
  Rice paddy Nitrospirae carry and express genes related to sulfate respiration: Proposal of the new genus “Candidatus Sulfobium”
  Appl. Environ. Microb. 84 (5), e02224-17 10.1128/AEM.02224-17

2017 (22)

• Chupani, L., Zusková, É., Niksirat, H., Panáček, A., Lünsmann, V., Haange, S.-B., von Bergen, M., Jehmlich, N. (2017):
  Effects of chronic dietary exposure of zinc oxide nanoparticles on the serum protein profile of juvenile common carp (Cyprinus carpio L.)
  Sci. Total Environ. 579 , 1504 - 1511 10.1016/j.scitotenv.2016.11.154
• Ebenau-Jehle, C., Mergelsberg, M., Fischer, S., Brüls, T., Jehmlich, N., von Bergen, M., Boll, M. (2017):
  An unusual strategy for the anoxic biodegradation of phthalate
  ISME J. 11 (1), 224 - 236 10.1038/ismej.2016.91
• Englich, B., Herberth, G., Rolle-Kampczyk, U., Trump, S., Röder, S., Borte, M., Stangl, G.I., von Bergen, M., Lehmann, I., Junge, K.M. (2017):
  Maternal cytokine status may prime the metabolic profile and increase risk of obesity in children
  Int. J. Obes. 41 (9), 1440 - 1446 10.1038/ijo.2017.113
• Friedman, R.C., Kalkhof, S., Doppelt-Azeroual, O., Mueller, S.A., Chovancová, M., von Bergen, M., Schwikowski, B. (2017):
  Common and phylogenetically widespread coding for peptides by bacterial small RNAs
  BMC Genomics 18 , art. 553 10.1186/s12864-017-3932-y
• Hartwig, S., Dragomirova, N., Kublik, A., Türkowsky, D., von Bergen, M., Lechner, U., Adrian, L., Sawers, R.G. (2017):
  A H₂-oxidizing, 1,2,3-trichlorobenzene-reducing multienzyme complex isolated from the obligately organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1
  Environ. Microbiol. Rep. 9 (5), 618 - 625 10.1111/1758-2229.12560
• Herberth, G., Pierzchalski, A., Feltens, R., Bauer, M., Röder, S., Olek, S., Hinz, D., Borte, M., von Bergen, M., Lehmann, I. (2017):
  Prenatal phthalate exposure associates with low regulatory T-cell numbers and atopic dermatitis in early childhood: Results from the LINA mother-child study. Letter to the editor
  J. Allergy Clin. Immunol. 139 (4), 1376 - 1379.e8 10.1016/j.jaci.2016.09.034
• Hoffmann, M., Gebauer, S., Nüchter, M., Baber, R., Ried, J., von Bergen, M., Kiess, W. (2017):
  Endokrine Modulatoren. Hinweise aus epidemiologischen Studien bedürfen einer kritischen Überprüfung in Modellsystemen. Endocrine disruptors. Evidence from epidemiological studies necessitates a critical review of model systems
  Bundesgesundheitsblatt-Gesund. 60 (6), 640 - 648 10.1007/s00103-017-2551-8
• Jouy, F., Lohmann, N., Wandel, E., Ruiz-Gómez, G., Pisabarro, M.T., Beck-Sickinger, A.G., Schnabelrauch, M., Möller, S., Simon, J.C., Kalkhof, S., von Bergen, M., Franz, S. (2017):
  Sulfated hyaluronan attenuates inflammatory signaling pathways in macrophages involving induction of antioxidants
  Proteomics 17 (10), art. 1700082 10.1002/pmic.201700082
• Kadisch, M., Julsing, M.K., Schrewe, M., Jehmlich, N., Scheer, B., von Bergen, M., Schmid, A., Bühler, B. (2017):
  Maximization of cell viability rather than biocatalyst activity improves whole-cell ω-oxyfunctionalization performance
  Biotechnol. Bioeng. 114 (4), 874 - 884 10.1002/bit.26213
• Oberbach, A., Haange, S.-B., Schlichting, N., Heinrich, M., Lehmann, S., Till, H., Hugenholtz, F., Kullnick, Y., Smidt, H., Frank, K., Seifert, J., Jehmlich, N., von Bergen, M. (2017):
  Metabolic in vivo labeling highlights differences of metabolically active microbes from the mucosal gastrointestinal microbiome between high-fat and normal chow diet
  J. Proteome Res. 16 (4), 1593 - 1604 10.1021/acs.jproteome.6b00973
• Pinaud, L., Ferrari, M.L., Friedman, R., Jehmlich, N., von Bergen, M., Phalipon, A., Sansonetti, P.J., Campbell-Valois, F.-X. (2017):
  Identification of novel substrates of Shigella T3SA through analysis of its virulence plasmid-encoded secretome
  PLOS One 12 (10), e0186920 10.1371/journal.pone.0186920
• Potratz, S., Tarnow, P., Jungnickel, H., Baumann, S., von Bergen, M., Tralau, T., Luch, A. (2017):
  Combination of metabolomics with cellular assays reveals new biomarkers and mechanistic insights on xenoestrogenic exposures in MCF-7 cells
  Chem. Res. Toxicol. 30 (4), 883 - 892 10.1021/acs.chemrestox.6b00106
• Raulien, N., Friedrich, K., Strobel, S., Rubner, S., Baumann, S., von Bergen, M., Körner, A., Krueger, M., Rossol, M., Wagner, U. (2017):
  Fatty acid oxidation compensates for lipopolysaccharide-induced Warburg effect in glucose-deprived monocytes
  Front. Immunol. 8 , art. 609 10.3389/fimmu.2017.00609
• Schubert, K., Olde Damink, S.W.M., von Bergen, M., Schaap, F.G. (2017):
  Interactions between bile salts, gut microbiota, and hepatic innate immunity
  Immunol. Rev. 279 (1), 23 - 35 10.1111/imr.12579
• Starke, R., Müller, M., Gaspar, M., Marz, M., Küsel, K., Totsche, K.U., von Bergen, M., Jehmlich, N. (2017):
  Candidate Brocadiales dominates C, N and S cycling in anoxic groundwater of a pristine limestone-fracture aquifer
  J. Proteomics 152 , 153 - 160 10.1016/j.jprot.2016.11.003
• Taubert, M., Grob, C., Howar, A.M., Burns, O.J., Pratscher, J., Jehmlich, N., von Bergen, M., Richnow, H.H., Chen, Y., Murrell, J.C. (2017):
  Methylamine as a nitrogen source for microorganisms from a coastal marine environment
  Environ. Microbiol. 19 (6), 2246 - 2257 10.1111/1462-2920.13709
• Tautenhahn, H.-M., Brückner, S., Uder, C., Erler, S., Hempel, M., von Bergen, M., Brach, J., Winkler, S., Pankow, F., Gittel, C., Baunack, M., Lange, U., Broschewitz, J., Dollinger, M., Bartels, M., Pietsch, U., Amann, K., Christ, B. (2017):
  Mesenchymal stem cells correct haemodynamic dysfunction associated with liver injury after extended resection in a pig model
  Sci. Rep. 7 , art. 2617 10.1038/s41598-017-02670-8
• Warnke, M., Jacoby, C., Jung, T., Agne, M., Mergelsberg, M., Starke, R., Jehmlich, N., von Bergen, M., Richnow, H.-H., Brüls, T., Boll, M. (2017):
  A patchwork pathway for oxygenase-independent degradation of side chain containing steroids
  Environ. Microbiol. 19 (11), 4684 - 4699 10.1111/1462-2920.13933
• Wewering, F., Jouy, F., Caliskan, S., Kalkhof, S., von Bergen, M., Luch, A., Zellmer, S. (2017):
  Hepatic co-cultures in vitro reveal suitable to detect Nrf2-mediated oxidative stress responses on the bladder carcinogen o-anisidine
  Toxicol. Vitro 40 , 153 - 160 10.1016/j.tiv.2017.01.006
• Wewering, F., Jouy, F., Wissenbach, D.K., Gebauer, S., Blüher, M., Gebhardt, R., Pirow, R., von Bergen, M., Kalkhof, S., Luch, A., Zellmer, K. (2017):
  Characterization of chemical-induced sterile inflammation in vitro: application of the model compound ketoconazole in a human hepatic co-culture system
  Arch. Toxicol. 91 (2), 799 - 810 10.1007/s00204-016-1686-y
• Winkler, S., Kalkhof, S., Brückner, S., Hempel, M., Baumann, S., von Bergen, M., Christ, B. (2017):
  Metabolic fingerprint of an immunodeficient NASH mouse model and impact after stem cell therapy
  J. Hepatol. 66 (1 (Suppl.)), S606 - S607 10.1016/S0168-8278(17)31648-3
• Winter, M., Thürmann, L., Gu, Z., Schüürmann, G., Herberth, G., Hinz, D., von Bergen, M., Harms, H., Olek, S., Röder, S., Borte, M., Eils, R., Lehmann, I., Trump, S. (2017):
  The benzene metabolite 1,4-benzoquinone reduces regulatory T-cell function: A potential mechanism for tobacco smoke–associated atopic dermatitis
  J. Allergy Clin. Immunol. 140 (2), 603 - 605 10.1016/j.jaci.2017.01.034

2016 (43)

• Bastida, F., Jehmlich, N., Lima, K., Morris, B.E.L., Richnow, H.H., Hernández, T., von Bergen, M., García, C. (2016):
  The ecological and physiological responses of the microbial community from a semiarid soil to hydrocarbon contamination and its bioremediation using compost amendment
  J. Proteomics 135 , 162 - 169 10.1016/j.jprot.2015.07.023
• Dey, P., Gola, D., Mishra, A., Malik, A., Kumar, P., Singh, D.K., Patel, N., von Bergen, M., Jehmlich, N. (2016):
  Comparative performance evaluation of multi-metal resistant fungal strains for simultaneous removal of multiple hazardous metals
  J. Hazard. Mater. 318 , 679 - 685 10.1016/j.jhazmat.2016.07.025
• Dietrich, S., Floegel, A., Troll, M., Kühn, T., Rathmann, W., Peters, A., Sookthai, D., von Bergen, M., Kaaks, R., Adamski, J., Prehn, C., Boeing, H., Schulze, M.B., Illig, T., Pischon, T., Knüppel, S., Wang-Sattler, R., Drogan, D. (2016):
  Random Survival Forest in practice: a method for modelling complex metabolomics data in time to event analysis
  Int. J. Epidemiol. 45 (5), 1406 - 1420 10.1093/ije/dyw145
• Els-Heindl, S., Kostelnik, K.B., Klöting, N., Baumann, S., von Bergen, M., Beck-Sickinger, A.G. (2016):
  A palmitoylated ghrelin receptor ligand shows high metabolic invivo stability and bioavailability
  Neuropeptides 55 , 1 - 12 10.1016/j.npep.2015.11.031
• Förster, Y., Schmidt, J.R., Wissenbach, D.K., Pfeiffer, S.E.M., Baumann, S., Hofbauer, L.C., von Bergen, M., Kalkhof, S., Rammelt, S. (2016):
  Microdialysis sampling from wound fluids enables quantitative assessment of cytokines, proteins, and metabolites reveals bone defect-specific molecular profiles
  PLOS One 11 (7), e0159580 10.1371/journal.pone.0159580
• Gjesing Welinder, K., Hansen, R., Toft Overgaard, M., Brohus, M., Sønderkær, M., von Bergen, M., Rolle-Kampczyk, U., Otto, W., Lindahl, T.L., Arinell, K., Evans, A.L., Swenson, J.E., Revsbech, I.G., Frøbert, O. (2016):
  Biochemical foundations of health and energy conservation in hibernating free-ranging subadult brown bear Ursus arctos
  J. Biol. Chem. 291 , 22509 - 22523 10.1074/jbc.M116.742916
• Goris, T., Schiffmann, C.L., Gadkari, J., Adrian, L., von Bergen, M., Diekert, G., Jehmlich, N. (2016):
  Proteomic data set of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates
  Data Brief 8 , 637 - 642 10.1016/j.dib.2016.06.022
• Herbst, F.-A., Lünsmann, V., Kjeldal, H., Jehmlich, N., Tholey, A., von Bergen, M., Nielsen, J.L., Hettich, R.L., Seifert, J., Nielsen, P.H. (2016):
  Enhancing metaproteomics—The value of models and defined environmental microbial systems
  Proteomics 16 (5), 783 - 798 10.1002/pmic.201500305
• Hoeke, H., Roeder, S., Bertsche, T., Borte, M., von Bergen, M., Wissenbach, D.K. (2016):
  Assessment of maternal drug intake by urinary bio monitoring during pregnancy and postpartally until the third perinatal year
  Pharmacoepidemiol. Drug Saf. 25 (4), 431 - 437 10.1002/pds.3943
• Hoeke, H., Roeder, S., Mueller, A., Bertsche, T., Borte, M., Rolle-Kampczyk, U., von Bergen, M., Wissenbach, D.K. (2016):
  Biomonitoring of prenatal analgesic intake and correlation with infantile anti-aeroallergens IgE
  Allergy 71 (6), 901 - 906 10.1111/all.12897
• Hörnig, F., Kohajda, T., Röder, S., Herberth, G., von Bergen, M., Borte, M., Diez, U., Rolle-Kampczyk, U., Simon, J.-C., Denburg, J.A., Lehmann, I., Junge, K.M. (2016):
  The LINA study: higher sensitivity of infant compared to maternal eosinophil/basophil progenitors to indoor chemical exposures
  J. Environ. Public Health 2016 , art. 5293932 10.1155/2016/5293932
• Huber, K., Dänicke, S., Rehage, J., Sauerwein, H., Otto, W., Rolle-Kampczyk, U., von Bergen, M. (2016):
  Metabotypes with properly functioning mitochondria and antiinflammation predict extended productive life span in dairy cows
  Sci. Rep. 6 , art. 24642 10.1038/srep24642
• Jehmlich, N., Vogt, C., Lünsmann, V., Richnow, H.H., von Bergen, M. (2016):
  Protein-SIP in environmental studies
  Curr. Opin. Biotechnol. 41 , 26 - 33 10.1016/j.copbio.2016.04.010
• Kalkhof, S., Schildbach, S., Blumert, C., Horn, F., von Bergen, M., Labudde, D. (2016):
  PIPINO: a software package to facilitate the identification of protein-protein interactions from affinity purification mass spectrometry data
  Biomed Res. Int. 2016 , art. 2891918 10.1155/2016/2891918
• Kenéz, Á., Dänicke, S., Rolle-Kampczyk, U., von Bergen, M., Huber, K. (2016):
  A metabolomics approach to characterize phenotypes of metabolic transition from late pregnancy to early lactation in dairy cows
  Metabolomics 12 (11), art. 165 10.1007/s11306-016-1112-8
• Kjeldal, H., Zhou, N.A., Wissenbach, D.K., von Bergen, M., Gough, H.L., Nielsen, J.L. (2016):
  Genomic, proteomic, and metabolite characterization of gemfibrozil-degrading organism Bacillus sp. GeD10
  Environ. Sci. Technol. 50 (2), 744 - 755 10.1021/acs.est.5b05003
• Kublik, A., Deobald, D., Hartwig, S., Schiffmann, C.L., Andrades, A., von Bergen, M., Sawers, R.G., Adrian, L. (2016):
  Identification of a multi-protein reductive dehalogenase complex in Dehalococcoides mccartyi strain CBDB1 suggests a protein-dependent respiratory electron transport chain obviating quinone involvement
  Environ. Microbiol. 18 (9), 3044 - 3056 10.1111/1462-2920.13200
• Kühn, T., Floegel, A., Sookthai, D., Johnson, T., Rolle-Kampczyk, U., Otto, W., von Bergen, M., Boeing, H., Kaaks, R. (2016):
  Higher plasma levels of lysophosphatidylcholine 18:0 are related to a lower risk of common cancers in a prospective metabolomics study
  BMC Med. 14 , art. 13 10.1186/s12916-016-0552-3
• Kühn, T., Sookthai, D., Rolle-Kampczyk, U., Otto, W., Otto, W., von Bergen, M., Kaaks, R., Johnson, T. (2016):
  Mid- and long-term correlations of plasma metabolite concentrations measured by a targeted metabolomics approach
  Metabolomics 12 (12), art. 184 10.1007/s11306-016-1133-3
• Lünsmann, V., Kappelmeyer, U., Benndorf, R., Martínez-Lavanchy, P.M., Taubert, A., Adrian, L., Duarte, M., Pieper, D.H., von Bergen, M., Müller, J.A., Heipieper, H.J., Jehmlich, N. (2016):
  In situ protein-SIP highlights Burkholderiaceae as key players degrading toluene by para ring hydroxylation in a constructed wetland model
  Environ. Microbiol. 18 (4), 1176 - 1186 10.1111/1462-2920.13133
• Lünsmann, V., Kappelmeyer, U., Taubert, A., Nijenhuis, I., von Bergen, M., Heipieper, H.J., Müller, J.A., Jehmlich, N. (2016):
  Aerobic toluene degraders in the rhizosphere of a constructed wetland model show diurnal polyhydroxyalkanoate metabolism
  Appl. Environ. Microb. 82 (14), 4126 - 4132 10.1128/AEM.00493-16
• Mahnke, H., Ballent, M., Baumann, S., Imperiale, F., von Bergen, M., Lanusse, C., Lifschitz, A.L., Honscha, W., Halwachs, S. (2016):
  The ABCG2 efflux transporter in the mammary gland mediates veterinary drug secretion across the blood-milk barrier into milk of dairy cows
  Drug Metab. Dispos. 44 (5), 700 - 708 10.1124/dmd.115.068940
• Malik, A.A., Chowdhury, S., Schlager, V., Oliver, A., Puissant, J., Vazquez, P.G.M., Jehmlich, N., von Bergen, M., Griffiths, R.I., Gleixner, G. (2016):
  Soil fungal:bacterial ratios are linked to altered carbon cycling
  Front. Microbiol. 7 , art. 1247 10.3389/fmicb.2016.01247
• Mussotter, F., Tomm, J.M., El Ali, Z., Pallardy, M., Kerdine-Römer, S., Götz, M., von Bergen, M., Haase, A., Luch, A. (2016):
  Proteomics analysis of dendritic cell activation by contact allergens reveals possible biomarkers regulated by Nrf2
  Toxicol. Appl. Pharmacol. 313 , 170 - 179 10.1016/j.taap.2016.11.001
• Rabus, R., Boll, M., Heider, J., Meckenstock, R.U., Buckel, W., Einsle, O., Ermler, U., Golding, B.T., Gunsalus, R.P., Kroneck, P.M.H., Krüger, M., Lueders, T., Martins, B.M., Musat, F., Richnow, H.H., Schink, B., Seifert, J., Szaleniec, M., Treude, T., Ullmann, G.M., Vogt, C., von Bergen, M., Wilkes, H. (2016):
  Anaerobic microbial degradation of hydrocarbons: from enzymatic reactions to the environment
  J. Mol. Microbiol. Biotechnol. 26 (1-3), 5 - 28 10.1159/000443997
• Rolle-Kampczyk, U.E., Krumsiek, J., Otto, W., Röder, S.W., Kohajda, T., Borte, M., Theis, F., Lehmann, I., von Bergen, M. (2016):
  Metabolomics reveals effects of maternal smoking on endogenous metabolites from lipid metabolism in cord blood of newborns
  Metabolomics 12 (4), art. 76 10.1007/s11306-016-0983-z
• Rother, S., Samsonov, S.A., Hofmann, T., Blaszkiewicz, J., Köhling, S., Moeller, S., Schnabelrauch, M., Rademann, J., Kalkhof, S., von Bergen, M., Pisabarro, M.T., Scharnweber, D., Hintze, V. (2016):
  Structural and functional insights into the interaction of sulfated glycosaminoglycans with tissue inhibitor of metalloproteinase-3 – A possible regulatory role on extracellular matrix homeostasis
  Acta Biomater. 45 , 143 - 154 10.1016/j.actbio.2016.08.030
• Schaarschmidt, J., Nagel, M.B.M., Huth, S., Jaeschke, H., Moretti, R., Hintze, V., von Bergen, M., Kalkhof, S., Meiler, J., Paschke, R. (2016):
  Rearrangement of the extracellular domain/extracellular loop 1 interface is critical for thyrotropin receptor activation
  J. Biol. Chem. 291 , 14095 - 14108 10.1074/jbc.M115.709659
• Schaubeck, M., Clavel, T., Calasan, J., Lagkouvardos, I., Haange, S.B., Jehmlich, N., Basic, M., Dupont, A., Hornef, M., von Bergen, M., Bleich, A., Haller, D. (2016):
  Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence
  Gut 65 , 225 - 237 10.1136/gutjnl-2015-309333
• Schiffmann, C.L., Otto, W., Hansen, R., Nielsen, P.H., Adrian, L., Seifert, J., von Bergen, M., Jehmlich, N. (2016):
  Proteomic dataset of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor
  Data Brief 7 , 253 - 256 10.1016/j.dib.2016.02.037
• Schmidt, J.R., Kliemt, S., Preissler, C., Moeller, S., von Bergen, M., Hempel, U., Kalkhof, S. (2016):
  Osteoblast-released matrix vesicles, regulation of activity and composition by sulfated and non-sulfated glycosaminoglycans
  Mol. Cell. Proteomics 15 , 558 - 572 10.1074/mcp.M115.049718
• Schütze, N., Trojandt, S., Kuhn, S., Tomm, J.M., von Bergen, M., Simon, J.C., Polte, T. (2016):
  Allergen-induced IL-6 regulates IL-9/IL-17A balance in CD4⁺ T cells in allergic airway inflammation
  J. Immunol. 197 (7), 2653 - 2664 10.4049/jimmunol.1501599
• Starke, R., Keller, A., Jehmlich, N., Vogt, C., Richnow, H.H., Kleinsteuber, S., von Bergen, M., Seifert, J. (2016):
  Pulsed ¹³C₂-acetate protein-SIP unveils Epsilonproteobacteria as dominant acetate utilizers in a sulfate-reducing microbial community mineralizing benzene
  Microb. Ecol. 71 (4), 901 - 911 10.1007/s00248-016-0731-y
• Starke, R., Kermer, R., Ullmann-Zeunert, L., Baldwin, I.T., Seifert, J., Bastida, F., von Bergen, M., Jehmlich, N. (2016):
  Bacteria dominate the short-term assimilation of plant-derived N in soil
  Soil Biol. Biochem. 96 , 30 - 38 10.1016/j.soilbio.2016.01.009
• Tautenhahn, H.-M., Brückner, S., Baumann, S., Winkler, S., Otto, W., von Bergen, M., Bartels, M., Christ, B. (2016):
  Attenuation of postoperative acute liver failure by mesenchymal stem cell treatment due to metabolic implications
  Ann. Surg. 263 (3), 546 - 556 10.1097/SLA.0000000000001155
• Tiedt, O., Mergelsberg, M., Boll, K., Müller, M., Adrian, L., Jehmlich, N., von Bergen, M., Boll, M. (2016):
  ATP-dependent C–F bond cleavage allows the complete degradation of 4-fluoroaromatics without oxygen
  mBio 7 (4), e00990-16 10.1128/mBio.00990-16
• Trump, S., Bieg, M., Gu, Z., Thürmann, L., Bauer, T., Bauer, M., Ishaque, N., Röder, S., Gu, L., Herberth, G., Lawerenz, C., Borte, M., Schlesner, M., Plass, C., Diessl, N., Eszlinger, M., Mücke, O., Elvers, H.-D., Wissenbach, D.K., von Bergen, M., Herrmann, C., Weichenhan, D., Wright, R.J., Lehmann, I., Eils, R. (2016):
  Prenatal maternal stress and wheeze in children: novel insights into epigenetic regulation
  Sci. Rep. 6 , art. 28616 10.1038/srep28616
• Vogt, C., Lueders, T., Richnow, H.H., Krüger, M., von Bergen, M., Seifert, J. (2016):
  Stable isotope probing approaches to study anaerobic hydrocarbon degradation and degraders
  J. Mol. Microbiol. Biotechnol. 26 (1-3), 195 - 210 10.1159/000440806
• Vorreiter, F., Richter, S., Peter, M., Baumann, S., von Bergen, M., Tomm, J.M. (2016):
  Comparison and optimization of methods for the simultaneous extraction of DNA, RNA, proteins, and metabolites
  Anal. Biochem. 508 , 25 - 33 10.1016/j.ab.2016.05.011
• Warnke, M., Jung, T., Dermer, J., Hipp, K., Jehmlich, N., von Bergen, M., Ferlaino, S., Fries, A., Müller, M., Boll, M. (2016):
  25-hydroxyvitamin D₃ synthesis by enzymatic steroid side-chain hydroxylation with water
  Angew. Chem.-Int. Edit. 55 (5), 1881 - 1884 10.1002/anie.201510331
• Winkler, S., Kalkhof, S., Brückner, S., Hempel, M., Baumann, S., von Bergen, M., Christ, B. (2016):
  Identification of molecular pathways for stem cell therapy of non-alcoholic steatohepatitis in an immunodeficient mouse model
  J. Hepatol. 64 (2 (Suppl.)), S683 10.1016/S0168-8278(16)01297-6
• Wissenbach, D.K., Oliphant, K., Rolle-Kampczyk, U., Yen, S., Höke, H., Baumann, S., Haange, S.B., Verdu, E.F., Allen-Vercoe, E., von Bergen, M. (2016):
  Optimization of metabolomics of defined in vitro gut microbial ecosystems
  Int. J. Med. Microbiol. 306 (5), 280 - 289 10.1016/j.ijmm.2016.03.007
• Wissenbach, D.K., Winkler, B., Otto, W., Kohajda, T., Roeder, S., Müller, A., Hoeke, H., Matysik, S., Schlink, U., Borte, M., Herbarth, O., Lehmann, I., von Bergen, M. (2016):
  Long-term indoor VOC concentrations assessment a trend analysis of distribution, disposition, and personal exposure in cohort study samples
  Air Qual. Atmos. Health 9 (8), 941 - 950 10.1007/s11869-016-0396-1

2015 (31)

• Ahrens, V.M., Kostelnik, K.B., Rennert, R., Böhme, D., Kalkhof, S., Kosel, D., Weber, L., von Bergen, M., Beck-Sickinger, A.G. (2015):
  A cleavable cytolysin–neuropeptide Y bioconjugate enables specific drug delivery and demonstrates intracellular mode of action
  J. Control. Release 209 , 170 - 178 10.1016/j.jconrel.2015.04.037
• Bargiela, R., Herbst, F.-A., Martínez-Martínez, M., Seifert, J., Rojo, D., Cappello, S., Genovese, M., Crisafi, F., Denaro, R., Chernikova, T.N., Barbas, C., von Bergen, M., Yakimov, M.M., Ferrer, M., Golyshin, P.N. (2015):
  Metaproteomics and metabolomics analyses of chronically petroleum-polluted sites reveal the importance of general anaerobic processes uncoupled with degradation
  Proteomics 15 (20), 3508 - 3520 10.1002/pmic.201400614
• Bastida, F., García, C., von Bergen, M., Moreno, J.L., Richnow, H.H., Jehmlich, N. (2015):
  Deforestation fosters bacterial diversity and the cyanobacterial community responsible for carbon fixation processes under semiarid climate: a metaproteomics study
  Appl. Soil Ecol. 93 , 65 - 67 10.1016/j.apsoil.2015.04.006
• Beyer, A., Baumann, S., Scherz, G., Stahl, J., von Bergen, M., Friese, A., Roesler, U., Kietzmann, M., Honscha, W. (2015):
  Effects of ceftiofur treatment on the susceptibility of commensal porcine E.coli – comparison between treated and untreated animals housed in the same stable
  BMC Vet. Res. 11 , art. 265 10.1186/s12917-015-0578-3
• Brückner, S., Tautenhahn, H.-M., Baumann, S., Winkler, S., Bartels, M., von Bergen, M., Christ, B. (2015):
  Mesenchymal stem cells (MSC) prevent liver failure after huge liver resection in rat
  Transplantation 99 (7S), 267 10.1097/01.tp.0000469973.81769.3c
• Daims, H., Lebedeva, E.V., Pjevac, P., Han, P., Herbold, C., Albertsen, M., Jehmlich, N., Palatinszky, M., Vierheilig, J., Bulaev, A., Kirkegaard, R.H., von Bergen, M., Rattei, T., Bendinger, B., Nielsen, P.H., Wagner, M. (2015):
  Complete nitrification by Nitrospira bacteria
  Nature 528 (7583), 504 - 509 10.1038/nature16461
• Feltens, R., Roeder, S., Otto, W., Borte, M., Lehmann, I., von Bergen, M., Wissenbach, D.K. (2015):
  Evaluation of population and individual variances of urinary phthalate metabolites in terms of epidemiological studies
  Journal of Chromatography & Separation Techniques 6 (6), art. 1000290 10.4172/2157-7064.1000290
• Goris, T., Schiffmann, C.L., Gadkari, J., Schubert, T., Seifert, J., Jehmlich, N., von Bergen, M., Diekert, G. (2015):
  Proteomics of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates
  Sci. Rep. 5 , art. 13794 10.1038/srep13794
• Grob, C., Taubert, M., Howat, A.M., Burns, O.J., Dixon, J.L., Richnow, H.H., Jehmlich, N., von Bergen, M., Chen, Y., Murrell, J.C. (2015):
  Combining metagenomics with metaproteomics and stable isotope probing reveals metabolic pathways used by a naturally occurring marine methylotroph
  Environ. Microbiol. 17 (10), 4007 - 4018 10.1111/1462-2920.12935
• Halwachs, S., Mahnke, H., Ballent, M., Baumann, S., von Bergen, M., Viviani, P., Lanusse, C., Honscha, W., Lifschitz, A. (2015):
  ABCG2-mediated transport of anthelmintic drugs in the mammary gland of dairy cows
  J. Vet. Pharmacol. Ther. 38 (S1), 43 - 44 10.1111/jvp.12246
• Herberth, G., Offenberg, K., Rolle-Kampczyk, U., Bauer, M., Otto, W., Röder, S., Grützmann, K., Sack, E., Simon, J.-C., Borte, M., von Bergen, M., Lehmann, I. (2015):
  Endogenous metabolites and inflammasome activity in early childhood and links to respiratory diseases
  J. Allergy Clin. Immunol. 136 (2), 495 - 497 10.1016/j.jaci.2015.01.022
• Hoeke, H., Roeder, S., Bertsche, T., Lehmann, I., Borte, M., von Bergen, M., Wissenbach, D.K. (2015):
  Monitoring of drug intake during pregnancy by questionnaires and LC-MS/MS drug urine screening: evaluation of both monitoring methods
  Drug Test. Anal. 7 (8), 695 - 702 10.1002/dta.1767
• Hofmann, T., Samsonov, S.A., Pichert, A., Lemmnitzer, K., Schiller, J., Huster, D., Pisabarro, M.T., von Bergen, M., Kalkhof, S. (2015):
  Structural analysis of the interleukin-8/glycosaminoglycan interactions by amide hydrogen/deuterium exchange mass spectrometry
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• Jouy, F., Müller, S.A., Wagner, J., Otto, W., von Bergen, M., Tomm, J.M. (2015):
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• Kalkhof, S., Dautel, F., Loguercio, S., Baumann, S., Trump, S., Jungnickel, H., Otto, W., Rudzok, S., Potratz, S., Luch, A., Lehmann, I., Beyer, A., von Bergen, M. (2015):
  Pathway and time-resolved benzo[a]pyrene toxicity on Hepa1c1c7 cells at toxic and subtoxic exposure
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• Klöting, N., Hesselbarth, N., Gericke, M., Kunath, A., Biemann, R., Chakaroun, R., Kosacka, J., Kovacs, P., Kern, M., Stumvoll, M., Fischer, B., Rolle-Kampczyk, U., Feltens, R., Otto, W., Wissenbach, D.K., von Bergen, M., Blüher, M. (2015):
  Di-(2-ethylhexyl)-phthalate (DEHP) causes impaired adipocyte function and alters serum metabolites
  PLOS One 10 (12), e0143190 10.1371/journal.pone.0143190
• Kostelnik, K.B., Els-Heindl, S., Klöting, N., Baumann, S., von Bergen, M., Beck-Sickinger, A.G. (2015):
  High metabolic in vivo stability and bioavailability of a palmitoylated ghrelin receptor ligand assessed by mass spectrometry
  Bioorg. Med. Chem. 23 (14), 3925 - 3932 10.1016/j.bmc.2014.12.008
• Kümmel, S., Herbst, F.-A., Bahr, A., Duarte, M., Pieper, D.H., Jehmlich, N., Seifert, J., von Bergen, M., Bombach, P., Richnow, H.H., Vogt, C. (2015):
  Anaerobic naphthalene degradation by sulfate-reducing Desulfobacteraceae from various anoxic aquifers
  FEMS Microbiol. Ecol. 91 (3), fiv006 10.1093/femsec/fiv006
• Linton, S.M., Cameron, M.S., Gray, M.C., Donald, J.A., Saborowski, R., von Bergen, M., Tomm, J.M., Allardyce, B.J. (2015):
  A glycosyl hydrolase family 16 gene is responsible for the endogenous production of β-1,3-glucanases within decapod crustaceans
  Gene 569 (2), 203 - 217 10.1016/j.gene.2015.05.056
• Müller, S.A., Pernitzsch, S.R., Haange, S.-B., Uetz, P., von Bergen, M., Sharma, C.M., Kalkhof, S. (2015):
  Stable isotope labeling by amino acids in cell culture based proteomics reveals differences in protein abundances between spiral and coccoid forms of the gastric pathogen Helicobacter pylori
  J. Proteomics 126 , 34 - 45 10.1016/j.jprot.2015.05.011
• Palatinszky, M., Herbold, C., Jehmlich, N., Pogoda, M., Han, P., von Bergen, M., Lagkouvardos, I., Karst, S.M., Galushko, A., Koch, H., Berry, D., Daims, H., Wagner, M. (2015):
  Cyanate as an energy source for nitrifiers
  Nature 524 (7563), 105 - 108 10.1038/nature14856
• Pöritz, M., Schiffmann, C.L., Hause, G., Heinemann, U., Seifert, J., Jehmlich, N., von Bergen, M., Nijenhuis, I., Lechner, U. (2015):
  Dehalococcoides mccartyi strain DCMB5 respires a broad spectrum of chlorinated aromatic compounds
  Appl. Environ. Microb. 81 (2), 587 - 596 10.1128/AEM.02597-14
• Remane, D., Grunwald, S., Hoeke, H., Mueller, A., Roeder, S., von Bergen, M., Wissenbach, D.K. (2015):
  Validation of a multi-analyte HPLC-DAD method for determination of uric acid, creatinine, homovanillic acid, niacinamide, hippuric acid, indole-3-acetic acid and 2-methylhippuric acid in human urine
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• Rösch, C., Wissenbach, D.K., von Bergen, M., Franck, U., Wendisch, M., Schlink, U. (2015):
  The lasting effect of limonene-induced particle formation on air quality in a genuine indoor environment
  Environ. Sci. Pollut. Res. 22 (18), 14209 - 14219 10.1007/s11356-015-4663-8
• Sachsenberg, T., Herbst, F.-A., Taubert, M., Kermer, R., Jehmlich, N., von Bergen, M., Seifert, J., Kohlbacher, O. (2015):
  MetaProSIP: Automated inference of stable isotope incorporation rates in proteins for functional metaproteomics
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• Schaubeck, M., Clavel, T., Lagkouvardos, M., Calasan, J., Haange, S.B., Jehmlich, N., von Bergen, M., Basic, M., Bleich, A., Haller, D. (2015):
  Transmissive Crohn's disease-like ileitis is caused by functional dysbiosis in the intestinal microbiota independent of inflammation-driven Paneth cell failure
  J. Crohns Colitis 9 (Suppl. 1), S1 - S1 10.1093/ecco-jcc/jju027.001
• Scherz, G., Beyer, A., Stahl, J., Roesler, U., Friese, A., von Bergen, M., Kietzmann, M., Honscha, W. (2015):
  Occurrence of cephalosporin resistant and ESBL-producing commensal Escherichia coli in the microbiota from swine treated with ceftiofur
  J. Vet. Pharmacol. Ther. 38 (S1), 92 - 93 10.1111/jvp.12247
• Seyhan, D., Jehmlich, N., von Bergen, M., Fersch, J., Rother, M. (2015):
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  Biochim. Biophys. Acta-Gen. Subj. 1850 , 2385 - 2392 10.1016/j.bbagen.2015.07.009
• Tobalina, L., Bargiela, R., Pey, J., Herbst, F.-A., Lores, I., Rojo, D., Barbas, C., Peláez, A.I., Sánchez, J., von Bergen, M., Seifert, J., Ferrer, M., Planes, F.J. (2015):
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  Bioinformatics 31 (11), 1771 - 1779 10.1093/bioinformatics/btv036
• Winkler, S., Kalkhof, S., Hempel, M., Brückner, S., von Bergen, M., Christ, B. (2015):
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• Zanker, D., Otto, W., Chen, W., von Bergen, M., Tomm, J. (2015):
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2014 (20)

• Bastida, F., Jehmlich, N., Ondoño, S., von Bergen, M., García, C., Moreno, J.L. (2014):
  Characterization of the microbial community in biological soil crusts dominated by Fulgensia desertorum (Tomin) Poelt and Squamarina cartilaginea (With.) P. James and in the underlying soil
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• Baumann, S., Rockstroh, M., Bartel, J., Krumsiek, J., Otto, W., Jungnickel, H., Potratz, S., Luch, A., Wilscher, E., Theis, F.J., von Bergen, M., Tomm, J.M. (2014):
  Subtoxic concentrations of benzo[a]pyrene induce metabolic changes and oxidative stress in non-activated and affect the mTOR pathway in activated Jurkat T cells
  Journal of Integrated OMICS 4 (1), 11 - 20 10.5584/jiomics.v4i1.157
• Bozinovski, D., Taubert, M., Kleinsteuber, S., Richnow, H.-H., von Bergen, M., Vogt, C., Seifert, J. (2014):
  Metaproteogenomic analysis of a sulfate-reducing enrichment culture reveals genomic organization of key enzymes in the m-xylene degradation pathway and metabolic activity of proteobacteria
  Syst. Appl. Microbiol. 37 (7), 488 - 501 10.1016/j.syapm.2014.07.005
• Franck, U., Weller, A., Röder, S.W., Herberth, G., Junge, K.M., Kohajda, T., von Bergen, M., Rolle-Kampczyk, U., Diez, U., Borte, M., Lehmann, I. (2014):
  Prenatal VOC exposure and redecoration are related to wheezing in early infancy
  Environ. Int. 73 , 393 - 401 10.1016/j.envint.2014.08.013
• Herberth, G., Bauer, M., Gasch, M., Hinz, D., Röder, S., Olek, S., Kohajda, T., Rolle-Kampczyk, U., von Bergen, M., Sack, U., Borte, M., Lehmann, I. (2014):
  Maternal and cord blood miR-223 expression associates with prenatal tobacco smoke exposure and low regulatory T-cell numbers
  J. Allergy Clin. Immunol. 133 (2), 543 - 550.e4 10.1016/j.jaci.2013.06.036
• Imhasly, S., Naegeli, H., Baumann, S., von Bergen, M., Luch, A., Jungnickel, H., Potratz, S., Gerspach, C. (2014):
  Metabolomic biomarkers correlating with hepatic lipidosis in dairy cows
  BMC Vet. Res. 10 , art. 122 10.1186/1746-6148-10-122
• Jungandreas, A., Schellenberger Costa, B., Jakob, T., von Bergen, M., Baumann, S., Wilhelm, C. (2014):
  The acclimation of Phaeodactylum tricornutum to blue and red light does not influence the photosynthetic light reaction but strongly disturbs the carbon allocation pattern
  PLOS One 9 (8), e99727 10.1371/journal.pone.0099727
• Junge, K.M., Hörnig, F., Herberth, G., Röder, S., Kohajda, T., Rolle-Kampczyk, U., von Bergen, M., Borte, M., Simon, J.-C., Heroux, D., Denburg, J.A., Lehmann, I. (2014):
  The LINA cohort: cord blood eosinophil/basophil progenitors predict respiratory outcomes in early infancy
  Clin. Immunol. 152 (1-2), 68 - 76 10.1016/j.clim.2014.02.013
• Jungnickel, H., Luch, A., Potratz, S., von Bergen, M., Baumann, S., Tarnow, P. (2014):
  Identification of lipidomic biomarkers for coexposure to subtoxic doses of benzo[a]pyrene and cadmium: the toxicological cascade biomarker approach
  Environ. Sci. Technol. 48 (17), 10423 - 10431 10.1021/es502419w
• Kalkhof, S., Förster, Y., Schmidt, J., Schulz, M.C., Baumann, S., Weißflog, A., Gao, W., Hempel, U., Eckelt, U., Rammelt, S., von Bergen, M. (2014):
  Proteomics and metabolomics for in situ monitoring of wound healing
  Biomed Res. Int. 2014 , art. 934848 10.1155/2014/934848
• Kleindienst, S., Herbst, F.-A., Stagars, M., von Netzer, F., von Bergen, M., Seifert, J., Peplies, J., Amann, R., Musat, F., Lueders, T., Knittel, K. (2014):
  Diverse sulfate-reducing bacteria of the Desulfosarcina/Desulfococcus clade are the key alkane degraders at marine seeps
  ISME J. 8 (10), 2029 - 2044 10.1038/ismej.2014.51
• Lieder, S., Jahn, M., Seifert, J., von Bergen, M., Müller, S., Takors, R. (2014):
  Subpopulation-proteomics reveal growth rate, but not cell cycling, as a major impact on protein composition in Pseudomonas putida KT2440
  AMB Express 4 , art. 71 10.1186/s13568-014-0071-6
• Marozava, S., Röling, W.F.M., Seifert, J., Küffner, R., von Bergen, M., Meckenstock, R.U. (2014):
  Physiology of Geobacter metallireducens under excess and limitation of electron donors. Part II. Mimicking environmental conditions during cultivation in retentostats
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• Marozava, S., Röling, W.F.M., Seifert, J., Küffner, R., von Bergen, M., Meckenstock, R.U. (2014):
  Physiology of Geobacter metallireducens under excess and limitation of electron donors. Part I. Batch cultivation with excess of carbon sources
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• Mussotter, F., Haase, A., Tomm, J.M., El Ali, Z., Kerdine-Römer, S., Pallardy, M., von Bergen, M., Luch, A. (2014):
  A proteomics approach to elucidate the role of Nrf2 in primary bone-marrow-derived dendritic cells of mice upon activation by contact allergens
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• Oberbach, A., Schlichting, N., Neuhaus, J., Kullnick, Y., Lehmann, S., Heinrich, M., Dietrich, A., Mohr, F.W., von Bergen, M., Baumann, S. (2014):
  Establishing a reliable multiple reaction monitoring-based method for the quantification of obesity-associated comorbidities in serum and adipose tissue requires intensive clinical validation
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• Rösch, C., Kohajda, T., Röder, S., von Bergen, M., Schlink, U. (2014):
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• Schiffmann, C., Hansen, R., Baumann, S., Kublik, A., Nielsen, P.H., Adrian, L., von Bergen, M., Jehmlich, N., Seifert, J. (2014):
  Comparison of targeted peptide quantification assays for reductive dehalogenases by selective reaction monitoring (SRM) and precursor reaction monitoring (PRM)
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• Schiffmann, C.L., Jehmlich, N., Otto, W., Hansen, R., Nielsen, P.H., Adrian, L., Seifert, J., von Bergen-Tomm, M. (2014):
  Proteome profile and proteogenomics of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor
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• Uhlmann, K., Gibb, S., Kalkhof, S., Arroyo-Abad, U., Schulz, C., Hoffmann, B., Stubbins, F., Carpenter, S., Beer, M., von Bergen, M., Feltens, R. (2014):
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• Blumert, C., Kalkhof, S., Brocke-Heidrich, K., Kohajda, T., von Bergen, M., Horn, F. (2013):
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• Bodelier, P.L.E., Meima-Franke, M., Hordijk, C.A., Steenbergh, A.K., Hefting, M.E., Bodrossy, L., von Bergen, M., Seifert, J. (2013):
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• Boll, K., Reiche, K., Kasack, K., Mörbt, N., Kretzschmar, A.K., Tomm, J.M., Verhaegh, G., Schalken, J., von Bergen, M., Horn, F., Hackermüller, J. (2013):
  MiR-130a, miR-203 and miR-205 jointly repress key oncogenic pathways and are downregulated in prostate carcinoma
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• Eberlein, C., Estelmann, S., Seifert, J., von Bergen, M., Müller, M., Meckenstock, R.U., Boll, M. (2013):
  Identification and characterization of 2-naphthoyl-coenzyme A reductase, the prototype of a novel class of dearomatizing reductases
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• Ferrer, M., Ruiz, A., Lanza, F., Haange, S.-B., Oberbach, A., Till, H., Bargiela, R., Campoy, C., Segura, M.T., Richter, M., von Bergen, M., Seifert, J., Suarez, A. (2013):
  Microbiota from the distal guts of lean and obese adolescents exhibit partial functional redundancy besides clear differences in community structure
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• Guazzaroni, M.-E., Herbst, F.-A., Lores, I., Tamames, J., Peláez, A.I., López-Cortés, N., Alcaide, M., del Pozo, M.V., Vieites, J.M., von Bergen, M., Gallego, J.L.R., Bargiela, R., López-López, A., Pieper, D.H., Rosselló-Móra, R., Sánchez, J., Seifert, J., Ferrer, M. (2013):
  Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation
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• Herberth, G., Bauer, M., Gasch, M., Hinz, D., Röder, S., Olek, S., Kohajda, T., Rolle-Kampczyk, U., von Bergen-Tomm, M., Sack, U., Borte, M., Lehmann, I. (2013):
  Maternal and cord blood miR-223 expression associates with prenatal tobacco smoke exposure and with low Treg numbers
  Allergy 68 (Suppl. 97), 628 - 628 10.1111/all.12252
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  Elucidation of in situ polycyclic aromatic hydrocarbon degradation by functional metaproteomics (protein-SIP)
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  Mol. Cell. Proteomics 12 (8), 2060 - 2069 10.1074/mcp.M112.025627
• Jahn, M., Seifert, J., Hübschmann, T., von Bergen, M., Harms, H., Müller, S. (2013):
  Comparison of preservation methods for bacterial cells in cytomics and proteomics
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• Jahn, M., Seifert, J., von Bergen, M., Schmid, A., Bühler, B., Müller, S. (2013):
  Subpopulation-proteomics in prokaryotic populations
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  Analysis of structure, function, and activity of a benzene-degrading microbial community
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• Kliemt, S., Lange, C., Otto, W., Hintze, V., Möller, S., von Bergen, M., Hempel, U., Kalkhof, S. (2013):
  Sulfated hyaluronan containing collagen matrices enhance cell-matrix-interaction, endocytosis, and osteogenic differentiation of human mesenchymal stromal cells
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• Kung, J.W., Seifert, J., von Bergen, M., Boll, M. (2013):
  Cyclohexanecarboxyl-coenzyme A (CoA) and cyclohex-1-ene-1-carboxyl-CoA dehydrogenases, two enzymes involved in the fermentation of benzoate and crotonate in Syntrophus aciditrophicus
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• Leibeling, S., Maeß, M.B., Centler, F., Kleinsteuber, S., von Bergen, M., Thullner, M., Harms, H., Müller, R.H. (2013):
  Posttranslational oxidative modification of (R)-2-(2,4-dichlorophenoxy)propionate/α-ketoglutarate-dependent dioxygenases (RdpA) leads to improved degradation of 2,4-dichlorophenoxyacetate (2,4-D)
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• Markle, J.G.M., Frank, D.N., Mortin-Toth, S., Robertson, C.E., Feazel, L.M., Rolle-Kampczyk, U., von Bergen, M., McCoy, C.D., Macpherson, A.J., Danska, J.S. (2013):
  Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity
  Science 339 (6123 ), 1084 - 1088 10.1126/science.1233521
• Müller, S.A., Findeiß, S., Pernitzsch, S.R., Wissenbach, D.K., Stadler, P.F., Hofacker, I.L., von Bergen, M., Kalkhof, S. (2013):
  Identification of new protein coding sequences and signal peptidase cleavage sites of Helicobacter pylori strain 26695 by proteogenomics
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• Murugaiyan, J., Rockstroh, M., Wagner, J., Baumann, S., Schorsch, K., Trump, S., Lehmann, I., von Bergen, M., Tomm, J.M. (2013):
  Benzo[a]pyrene affects Jurkat T cells in the activated state via the antioxidant response element dependent Nrf2 pathway leading to decreased IL-2 secretion and redirecting glutamine metabolism
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• Murugaiyan, J., Weise, C., von Bergen, M., Roesler, U. (2013):
  Two-dimensional proteome reference map of Prototheca zopfii revealed reduced metabolism and enhanced signal transduction as adaptation to an infectious life style
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• Murugesan, K., Baumann, S., Wissenbach, D.K., Kliemt, S., Kalkhof, S., Otto, W., Mögel, I., Kohajda, T., von Bergen, M., Tomm, J.M. (2013):
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• Pérez-Cobas, A.E., Gosalbes, M.J., Friedrichs, A., Knecht, H., Artacho, A., Eismann, K., Otto, W., Rojo, D., Bargiela, R., von Bergen, M., Neulinger, S.C., Däumer, C., Heinsen, F.A., Latorre, A., Barbas, C., Seifert, J., Martins dos Santos, V., Ott, S.J., Ferrer, M., Moya, A. (2013):
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• Siegert, M., Taubert, M., Seifert, J., von Bergen-Tomm, M., Basen, M., Bastida, F., Gehre, M., Richnow, H.-H., Krüger, M. (2013):
  The nitrogen cycle in anaerobic methanotrophic mats of the Black Sea is linked to sulfate reduction and biomass decomposition
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• Taubert, M., von Bergen-Tomm, M., Seifert, J. (2013):
  Limitations in detection of 15N incorporation by mass spectrometry in protein-based stable isotope probing (protein-SIP)
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• Tomm, J.M., Krause, C., Simon, J.C., Treudler, R., von Bergen, M., Averbeck, M. (2013):
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• Baumgarten, T., Sperling, S., Seifert, J., von Bergen, M., Steiniger, F., Wick, L.Y., Heipieper, H.J. (2012):
  Membrane vesicle formation as a multiple-stress response mechanism enhances Pseudomonas putida DOT-T1E cell surface hydrophobicity and biofilm formation
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• Bönisch, U., Böhme, A., Kohajda, T., Mögel, I., Schütze, N., von Bergen, M., Simon, J.C., Lehmann, I., Polte, T. (2012):
  Volatile organic compounds enhance allergic airway inflammation in an experimental mouse model
  PLoS One 7 (7), e39817 10.1371/journal.pone.0039817
• Bozinovski, D., Herrmann, S., Richnow, H.-H., von Bergen, M., Seifert, J., Vogt, C. (2012):
  Functional analysis of an anaerobic m-xylene-degrading enrichment culture using protein-based stable isotope probing
  FEMS Microbiol. Ecol. 81 (1), 134 - 144 10.1111/j.1574-6941.2012.01334.x
• Goettsch, C., Kliemt, S., Sinningen, K., von Bergen, M., Hofbauer, L.C., Kalkhof, S. (2012):
  Quantitative proteomics reveals novel functions of osteoclast-associated receptor in STAT signaling and cell adhesion in human endothelial cells
  J. Mol. Cell. Cardiol. 53 (6), 829 - 837 10.1016/j.yjmcc.2012.09.003
• Gündel, U., Kalkhof, S., Zitzkat, D.P., von Bergen, M., Altenburger, R., Küster, E. (2012):
  Concentration-response concept in ecotoxicoproteomics: effects of different phenanthrene concentrations to the zebrafish (Danio rerio) embryo proteome
  Ecotox. Environ. Safe. 76 (1), 11 - 22 10.1016/j.ecoenv.2011.10.010
• Haange, S.-B., Oberbach, A., Schlichting, N., Hugenholtz, F., Smidt, H., von Bergen, M., Till, H., Seifert, J. (2012):
  Metaproteome analysis and molecular genetics of rat intestinal microbiota reveals section and localisation resolved species distribution and enzymatic functionalities
  J. Proteome Res. 11 (11), 5406 - 5417 10.1021/pr3006364
• Haas, S., Jahnke, H.-G., Moerbt, N., von Bergen, M., Aharinejad, S., Andrukhova, O., Robitzki, A.A. (2012):
  DIGE proteome analysis reveals suitability of ischemic cardiac in vitro model for studying cellular response to acute ischemia and regeneration
  PLoS One 7 (2), e31669 10.1371/journal.pone.0031669
• Hörnig, F., Weisse, K., Röder, S., Kohajda, T., von Bergen-Tomm, M., Borte, M., Diez, U., Simon, J., Denburg, J., Lehmann, I. (2012):
  Infantile eosinophil/basophil progenitors are more sensitive to indoor chemical exposures compared to their mothers
  Allergy 67 (Suppl. 96), 574 - 574 10.1111/all.12037
• Jehmlich, N., Kopinke, F.-D., Lenhard, S., Vogt, C., Herbst, F.-A., Seifert, J., Lissner, U., Völker, U., Schmidt, F., von Bergen, M. (2012):
  Sulfur-³⁶S stable isotope labeling of amino acids for quantification (SULAQ)
  Proteomics 12 (1), 37 - 42 10.1002/pmic.201100057
• Kespohl, S., Kotschy-Lang, N., Tomm, J.M., von Bergen, M., Maryska, S., Brüning, T., Raulf-Heimsoth, M. (2012):
  Occupational IgE-mediated softwood allergy: characterization of the causative allergen
  Int. Arch. Allergy Immunol. 157 (2), 202 - 208 10.1159/000324953
• Marco-Urrea, E., Seifert, J., von Bergen, M., Adrian, L. (2012):
  Stable isotope peptide mass spectrometry to decipher amino acid metabolism in Dehalococcoides strain CBDB1
  J. Bacteriol. 194 (16), 4169 - 4177 10.1128/JB.00049-12
• Morris, B.E.L., Herbst, F.-A., Bastida, F., Seifert, J., von Bergen, M., Richnow, H.-H., Suflita, J.M. (2012):
  Microbial interactions during residual oil and n-fatty acid metabolism by a methanogenic consortium
  Environ. Microbiol. Rep. 4 (3), 297 - 306 10.1111/j.1758-2229.2012.00333.x
• Müller, S.A., van der Smissen, A., von Feilitzsch, M., Anderegg, U., Kalkhof, S., von Bergen, M. (2012):
  Quantitative proteomics reveals altered expression of extracellular matrix related proteins of human primary dermal fibroblasts in response to sulfated hyaluronan and collagen applied as artificial extracellular matrix
  J. Mater. Sci.-Mater. Med. 23 (12), 3053 - 3065 10.1007/s10856-012-4760-x
• Oberbach, A., von Bergen, M., Blueher, S., Lehmann, S., Till, H. (2012):
  Combined serum proteomic and metabonomic profiling after laparoscopic sleeve gastrectomy in children and adolescents
  J. Laparoendosc. Adv. Surg. Tech. 22 (2), 184 - 188 10.1089/lap.2011.0115
• Oberender, J., Kung, J.W., Seifert, J., von Bergen, M., Boll, M. (2012):
  Identification and characterization of a succinyl-coenzyme A (CoA):benzoate CoA transferase in Geobacter metallireducens
  J. Bacteriol. 194 (10), 2501 - 2508 10.1128/JB.00306-12
• Pohler, P., Lehmann, J., Veneruso, V., Tomm, J., von Bergen, M., Lambrecht, B., Kohn, B., Weingart, C., Müller, T.H., Seltsam, A. (2012):
  Evaluation of the tolerability and immunogenicity of ultraviolet C-irradiated autologous platelets in a dog model
  Transfusion 52 (11), 2414 - 2426 10.1111/j.1537-2995.2012.03583.x
• Reinhold, A., Westermann, M., Seifert, J., von Bergen, M., Schubert, T., Diekert, G. (2012):
  Impact of vitamin B₁₂ on the formation of the tetrachloroethene reductive dehalogenase in Desulfitobacterium hafniense strain Y51
  Appl. Environ. Microb. 78 (22), 8025 - 8032 10.1128/AEM.02173-12
• Salbach, J., Kliemt, S., Rauner, M., Rachner, T.D., Goettsch, C., Kalkhof, S., von Bergen, M., Möller, S., Schnabelrauch, M., Hintze, V., Scharnweber, D., Hofbauer, L.C. (2012):
  The effect of the degree of sulfation of glycosaminoglycans on osteoclast function and signaling pathways
  Biomaterials 33 (33), 8418 - 8429 10.1016/j.biomaterials.2012.08.028
• Seifert, J., Taubert, M., Jehmlich, N., Schmidt, F., Völker, U., Vogt, C., Richnow, H.H., von Bergen, M. (2012):
  Protein-based stable isotope probing (protein-SIP) in functional metaproteomics
  Mass Spectrom. Rev. 31 (6), 683 - 697 10.1002/mas.21346
• Taubert, M., Vogt, C., Wubet, T., Kleinsteuber, S., Tarkka, M.T., Harms, H., Buscot, F., Richnow, H.-H., von Bergen, M., Seifert, J. (2012):
  Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium
  ISME J. 6 (12), 2291 - 2301 10.1038/ismej.2012.68
• von Bergen, M., Reiche, K., Hösler, N., Rockstroh, M., Horn, F., Hackermüller, J., Tomm, J. (2012):
  A time resolved analysis of nc/mRNA and protein expression throughout Th cell activation
  Immunology 137 (Suppl. S1), 364 - 364 10.1111/imm.12001
• Weisse, K., Lehmann, I., Heroux, D., Kohajda, T., Herberth, G., Röder, S., von Bergen, M., Borte, M., Denburg, J. (2012):
  The LINA cohort: indoor chemical exposure, circulating eosinophil/basophil (Eo/B) progenitors and early life skin manifestations
  Clin. Exp. Allergy 42 (9), 1337 - 1346 10.1111/j.1365-2222.2012.04024.x
• Weisse, K., Winkler, S., Stangl, G.I., Hirche, F., Herberth, G., Hinz, D., Bauer, M., Röder, S., Rolle-Kampczyk, U., von Bergen-Tomm, M., Olek, S., Sack, U., Borte, M., Richter, T., Lehmann, I. (2012):
  Maternal and newborn vitamin D status and its impact on fetal regulatory T cell development and children's atopy risk in the German LINA cohort study
  J. Reprod. Immunol. 94 (1), 53 - 54 10.1016/j.jri.2012.03.335
• Wirth, H., von Bergen, M., Binder, H. (2012):
  Mining SOM expression portraits: feature selection and integrating concepts of molecular function
  BioData Min. 5 (October), art. 18 10.1186/1756-0381-5-18
• Wirth, H., von Bergen, M., Murugaiyan, J., Roesler, U., Stokowy, T., Binder, H. (2012):
  MALDI-typing of infectious algae of the genus Prototheca using SOM portraits
  J. Microbiol. Methods 88 (1), 83 - 89 10.1016/j.mimet.2011.10.013

2011 (21)

• Bastida, F., Jechalke, S., Bombach, P., Franchini, A.G., Seifert, J., von Bergen, M., Vogt, C., Richnow, H.H. (2011):
  Assimilation of benzene carbon through multiple trophic levels traced by different stable isotope probing methodologies
  FEMS Microbiol. Ecol. 77 (2), 357 - 369 10.1111/j.1574-6941.2011.01118.x
• Dautel, F., Kalkhof, S., Trump, S., Lehmann, I., Beyer, A., von Bergen, M. (2011):
  Large-scale 2-D DIGE studies - guidelines to overcome pitfalls and challenges along the experimental procedure
  Journal of Integrated OMICS 1 (1), 170 - 179 10.5584/jiomics.v1i1.50
• Dautel, F., Kalkhof, S., Trump, S., Michaelson, J., Beyer, A., Lehmann, I., von Bergen, M. (2011):
  DIGE-based protein expression analysis of B[a]P-exposed hepatoma cells reveals a complex stress response including alterations in oxidative stress, cell cycle control, and cytoskeleton motility at toxic and subacute concentrations
  J. Proteome Res. 10 (2), 379 - 393 10.1021/pr100723d
• Dietrich, A., Blüher, M., Jonas, S., Shang, E., Till, H., von Bergen, M., Oberbach, A. (2011):
  Metabolic effects of sleeve gastrectomy on different serum proteins
  Obes. Surg. 21 (8), 1064 - 1064 10.1007/s11695-011-0435-9
• Georgieva, D., Seifert, J., Öhler, M., von Bergen, M., Spencer, P., Arni, R.K., Genov, N., Betzel, C. (2011):
  Pseudechis australis venomics: adaptation for a defense against microbial pathogens and recruitment of body transferrin
  J. Proteome Res. 10 (5), 2440 - 2464 10.1021/pr101248e
• Goodman, V., Müller, A., Gröger-Arndt, H., Schlosser, D., Jehmlich, N., Treudler, R., Lehmann, I., Simon, J.-C., von Bergen, M. (2011):
  Identification of spore specific allergen candidates from Penicillium chrysogenum
  Journal of Integrated OMICS 1 (2), 272 - 279 10.5584/jiomics.v1i2.75
• Jehmlich, N., Seifert, J., Taubert, M., Schmidt, F., Vogt, C., Richnow, H.H., von Bergen, M. (2011):
  Protein stable isotope probing
  In: Murrell, J.C., Whiteley, A.S. (eds.)
  Stable isotope probing and related technologies
  ASM Press, Washington, DC, p. 71 - 93
• Kuntze, K., Kiefer, P., Baumann, S., Seifert, J., von Bergen, M., Vorholt, J.A., Boll, M. (2011):
  Enzymes involved in the anaerobic degradation of meta-substituted halobenzoates
  Mol. Microbiol. 82 (3), 758 - 769 10.1111/j.1365-2958.2011.07856.x
• Marco-Urrea, E., Paul, S., Khodaverdi, V., Seifert, J., von Bergen, M., Kretzschmar, U., Adrian, L. (2011):
  Identification and characterization of a Re-Citrate synthase in Dehalococcoides strain CBDB1
  J. Bacteriol. 193 (19), 5171 - 5178 10.1128/JB.05120-11
• Michaelson, J., Trump, S., Rudzok, S., Gräbsch, C., Madureira, D.J., Dautel, F., Mai, J., Attinger, S., Schirmer, K., von Bergen, M., Lehmann, I., Beyer, A. (2011):
  Transcriptional signatures of regulatory and toxic responses to benzo-[a]-pyrene exposure
  BMC Genomics 12 , art. 502 10.1186/1471-2164-12-502
• Mögel, I., Baumann, S., Böhme, A., Kohajda, T., von Bergen, M., Simon, J.-C., Lehmann, I. (2011):
  The aromatic volatile organic compounds toluene, benzene and styrene induce COX-2 and prostaglandins in human lung epithelial cells via oxidative stress and p38 MAPK activation
  Toxicology 289 (1), 28 - 37 10.1016/j.tox.2011.07.006
• Mörbt, N., Feltens, R., Tomm, J., Kalkhof, S., Mögel, I., Vogt, C., Lehmann, I., von Bergen, M. (2011):
  Chlorinated benzenes cause concomitantly oxidative stress and induction of apoptotic markers in lung epithelial cells (A549) at non-acute toxic concentrations
  J. Proteome Res. 10 (2), 363 - 378 10.1021/pr1005718
• Oberbach, A., Blüher, M., Wirth, H., Till, H., Kovacs, P., Kullnick, Y., Schlichting, N., Tomm, J.M., Rolle-Kampczyk, U., Murugaiyan, J., Binder, H., Dietrich, A., von Bergen, M. (2011):
  Combined proteomic and metabolomic profiling of serum reveals association of the complement system with obesity and identifies novel markers of body fat mass changes
  J. Proteome Res. 10 (10), 4769 - 4788 10.1021/pr2005555
• Oberbach, A., Till, H., Dietrich, A., Shang, E., von Bergen, M. (2011):
  Integrated proteomic and lipidomic analysis of secretory phospholipase A2 and lysophosphatidylcholines metabolism following sleeve gastrectomy
  Obes. Surg. 21 (8), 1064 - 1065 10.1007/s11695-011-0435-9
• Rockstroh, M., Müller, S.A., Jende, C., Kerzhner, A., von Bergen, M., Tomm, J.M. (2011):
  Cell fractionation - an important tool for compartment proteomics
  Journal of Integrated OMICS 1 (1), 135 - 143 10.5584/jiomics.v1i1.52
• Schmitt, J., Chen, C.M., Apfelbacher, C., Romanos, M., Lehmann, I., Herbarth, O., Schaaf, B., Kraemer, U., von Bergen, M., Wichmann, H.-E., Heinrich, J. (2011):
  Infant eczema, infant sleeping problems, and mental health at 10 years of age: the prospective birth-cohort study LISAplus
  Allergy 66 (3), 404 - 411 10.1111/j.1398-9995.2010.02487.x
• Schramedei, K., Mörbt, N., Pfeifer, G., Läuter, J., Rosolowski, M., Tomm, J.M., von Bergen, M., Horn, F., Brocke-Heidrich, K. (2011):
  MicroRNA-21 targets tumor suppressor genes ANP32A and SMARCA4
  Oncogene 30 (6), 2975 - 2985 10.1038/onc.2011.15
• Taubert, M., Baumann, S., von Bergen, M., Seifert, J. (2011):
  Exploring the limits of robust detection of incorporation of 13C by mass spectrometry in protein-based stable isotope probing (protein-SIP)
  Anal. Bioanal. Chem. 401 (6), 1975 - 1982 10.1007/s00216-011-5289-4
• Taubert, M., Jehmlich, N., Vogt, C., Richnow, H.H., Schmidt, F., von Bergen, M., Seifert, J. (2011):
  Time resolved protein-based stable isotope probing (Protein-SIP) analysis allows quantification of induced proteins in substrate shift experiments
  Proteomics 11 (11), 2265 - 2274 10.1002/pmic.201000788
• Washietl, S., Findeiss, S., Müller, S.A., Kalkhof, S., von Bergen, M., Hofacker, I.L., Stadler, P.F., Goldmann, N. (2011):
  RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data
  RNA 17 (4), 578 - 594 10.1261/rna.2536111
• Wirth, H., Löffler, M., von Bergen, M., Binder, H. (2011):
  Expression cartography of human tissues using self organizing maps
  BMC Bioinformatics 12 , art. 306 10.1186/1471-2105-12-306

2010 (19)

• Bastida, F., Rosell, M., Franchini, A.G., Seifert, J., Finsterbusch, S., Jehmlich, N., Jechalke, S., von Bergen, M., Richnow, H.H. (2010):
  Elucidating MTBE degradation in a mixed consortium using a multidisciplinary approach
  FEMS Microbiol. Ecol. 73 (2), 370 - 384 10.1111/j.1574-6941.2010.00889.x
• Feltens, R., Görner, R., Kalkhof, S., Gröger-Arndt, H., von Bergen, M. (2010):
  Discrimination of different species from the genus Drosophila by intact protein profiling using matrix-assisted laser desorption ionization mass spectrometry
  BMC Evol. Biol. 10 , art. 95 10.1186/1471-2148-10-95
• Fetzer, I., Jehmlich, N., Vogt, C., Richnow, H.H., Seifert, J., Harms, H., von Bergen, M., Schmidt, F. (2010):
  Calculation of partial isotope incorporation into peptides measured by mass spectrometry
  BMC Res. Notes 3 , art. 178 10.1186/1756-0500-3-178
• Georgieva, D., Öhler, M., Seifert, J., von Bergen, M., Arni, R.K., Genov, N., Betzel, C. (2010):
  Snake venomic of Crotalus durissus terrificus-correlation with pharmacological activities
  J. Proteome Res. 9 (5), 2302 - 2316 10.1021/pr901042p
• Georgieva, D., Redecke, L., von Bergen, M., Genov, N., Betzel, C. (2010):
  Interactions of ginkgolides A and B with a recombinant human prion protein
  Protein Pept. Lett. 17 (3), 399 - 404 10.2174/092986610790780314
• Gündel, U., Kalkhof, S., von Bergen, M., Altenburger, R., Küster, E. (2010):
  Concentration-response concept in ecotoxicoproteomics: an optimised design for the detection of robust chemical stress associated protein markers: Effects of different concentrations of phenanthren to the proteome of Danio rerio embryos
  Comp. Biochem. Physiol. A-Mol. Integr. Physiol. 157 (Suppl. 1), S42 - S43 10.1016/j.cbpa.2010.06.119
• Jehmlich, N., Fetzer, I., Seifert, J., Mattow, J., Vogt, C., Harms, H., Thiede, B., Richnow, H.H., von Bergen, M., Schmidt, F. (2010):
  Decimal place slope: a fast and precise method for quantifying ¹³C incorporation levels for detecting the metabolic activity of microbial species
  Mol. Cell. Proteomics 9 (6), 1221 - 1227 10.1074/mcp.M900407-MCP200
• Jehmlich, N., Hübschmann, T., Gesell Salazar, M., Völker, U., Benndorf, D., Müller, S., von Bergen, M., Schmidt, F. (2010):
  Advanced tool for characterization of microbial cultures by combining cytomics and proteomics
  Appl. Microbiol. Biotechnol. 88 (2), 575 - 584 10.1007/s00253-010-2753-6
• Jehmlich, N., Kleinsteuber, S., Vogt, C., Benndorf, D., Harms, H., Schmidt, F., von Bergen, M., Seifert, J. (2010):
  Phylogenetic and proteomic analysis of an anaerobic toluene-degrading community
  J. Appl. Microbiol. 109 (6), 1937 - 1945 10.1111/j.1365-2672.2010.04823.x
• Jehmlich, N., Schmidt, F., Taubert, M., Seifert, J., Bastida, F., von Bergen, M., Richnow, H.-H., Vogt, C. (2010):
  Protein-based stable isotope probing
  Nat. Protoc. 5 (12), 1957 - 1966 10.1038/nprot.2010.166
• Kung, J.W., Baumann, S., von Bergen, M., Müller, M., Hagedoorn, P.-L., Hagen, W.R., Boll, M. (2010):
  Reversible biological Birch reduction at an extremely low redox potential
  J. Am. Chem. Soc. 132 (28), 9850 - 9856 10.1021/ja103448u
• Leibeling, S., Schmidt, F., Jehmlich, N., von Bergen, M., Müller, R.H., Harms, H. (2010):
  Declining capacity of starving Delftia acidovorans MC1 to degrade phenoxypropionate herbicides correlates with oxidative modification of the initial enzyme
  Environ. Sci. Technol. 44 (10), 3793 - 3799 10.1021/es903619j
• Leibeling, S., Taubert, M., Seifert, J., von Bergen, M., Harms, H., Müller, R.H. (2010):
  Adaptation of the herbicide-degrading strain Delftia acidovorans MC1 through carbonylation of RdpA as key enzyme
  J. Biotechnol. 150 (Suppl. 1), S262 - S263 10.1016/j.jbiotec.2010.09.160
• Müller, S.A., Kohajda, T., Findeiß, S., Stadler, P.F., Washietl, S., Kellis, M., von Bergen, M., Kalkhof, S. (2010):
  Optimization of parameters for coverage of low molecular weight proteins
  Anal. Bioanal. Chem. 398 (7-8), 2867 - 2881 10.1007/s00216-010-4093-x
• Öhler, M., Georgieva, D., Seifert, J., von Bergen, M., Arni, R.K., Genov, N., Betzel, C. (2010):
  The venomics of Bothrops alternatus is a pool of acidic proteins with predominant hemorrhagic and coagulopathic activities
  J. Proteome Res. 9 (5), 2422 - 2437 10.1021/pr901128x
• Schirmer, C., Klein, C., von Bergen, M., Simon, J.-C., Saalbach, A. (2010):
  Human fibroblasts support the expansion of IL-17-producing T cells via up-regulation of IL-23 production by dendritic cells
  Blood 116 (10), 1715 - 1725 10.1182/blood-2010-01-263509
• Schirmer, C., Klein, C., von Bergen, M., Simon, J.C., Saalbach, A. (2010):
  Differentiation of IL-17 secreting T cells is supported by human dermal fibroblasts via up-regulation of IL-23 production by dendritic cells
  Exp. Dermatol. 19 (2), 181 / P085 10.1111/j.1600-0625.2009.01051.x
• Selesi, D., Jehmlich, N., von Bergen, M., Schmidt, F., Rattei, T., Tischler, P., Lueders, T., Meckenstock, R.U. (2010):
  Combined genomic and proteomic approaches identify gene clusters involved in anaerobic 2-methylnaphthalene degradation in the dulfate-reducing enrichment culture N47
  J. Bacteriol. 192 (1), 295 - 306 10.1128/JB.00874-09
• Sträuber, H., Hübschmann, T., Jehmlich, N., Schmidt, F., von Bergen, M., Harms, H., Müller, S. (2010):
  NBDT (3-(N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino)-3-toluene) - A novel fluorescent dye for studying mechanisms of toluene uptake into vital bacteria
  Cytom. Part A 77A (2), 113 - 120 10.1002/cyto.a.20811

2009 (11)

• Benndorf, D., Vogt, C., Jehmlich, N., Schmidt, Y., Thomas, H., Woffendin, G., Shevchenko, A., Richnow, H.-H., von Bergen, M. (2009):
  Improving protein extraction and separation methods for investigating the metaproteome of anaerobic benzene communities within sediments
  Biodegradation 20 (6), 737 - 750 10.1007/s10532-009-9261-3
• Heine, F., Stahl, F., Sträuber, H., Wiacek, C., Benndorf, D., Repenning, C., Schmidt, F., Scheper, T., von Bergen, M., Harms, H., Müller, S. (2009):
  Prediction of flocculation ability of brewing yeast inoculates by flow cytometry, proteome analysis, and mRNA profiling
  Cytom. Part A 75A (2), 140 - 147 10.1002/cyto.a.20661
• Jehmlich, N., Schmidt, F., Taubert, M., Seifert, J., von Bergen, M., Richnow, H.-H., Vogt, C. (2009):
  Comparison of methods for simultaneous identification of bacterial species and determination of metabolic activity by protein-based stable isotope probing (Protein-SIP) experiments
  Rapid Commun. Mass Spectrom. 23 (12), 1871 - 1878 10.1002/rcm.4084
• Junghanns, C., Pecyna, M.J., Böhm, D., Jehmlich, N., Martin, C., von Bergen, M., Schauer, F., Hofrichter, M., Schlosser, D. (2009):
  Biochemical and molecular genetic characterisation of a novel laccase produced by the aquatic ascomycete Phoma sp. UHH 5-1-03
  Appl. Microbiol. Biotechnol. 84 (6), 1095 - 1105 10.1007/s00253-009-2028-2
• Mörbt, N., Mögel, I., Kalkhof, S., Feltens, R., Röder-Stolinski, C., Zheng, J., Vogt, C., Lehmann, I., von Bergen, M. (2009):
  Proteome changes in human bronchoalveolar cells following styrene exposure indicate involvement of oxidative stress in the molecular-response mechanism
  Proteomics 9 (21), 4909 - 4933 10.1002/pmic/200800836
• Rehders, D., Classen, B., Redecke, L., Buschke, A., Reibe, C., Jehmlich, N., von Bergen, M., Betzel, A., Meyer, B. (2009):
  Peptide NMHRYPNQ of the Cellular Prion Protein (PrP^C) Inhibits Aggregation and Is a Potential Key for Understanding Prion-Prion Interactions
  J. Mol. Biol. 392 (1), 198 - 207 10.1016/j.jmb.2009.07.014
• Risch, M., Georgieva, D., von Bergen, M., Jehmlich, N., Genov, N., Arni, R.K., Betzel, C. (2009):
  Snake venomics of the Siamese Russell's viper (Daboia russelli siamensis) - Relation to pharmacological activities
  J. Proteomics 72 (2), 256 - 269 10.1016/j.jprot.2009.01.006
• Schleinitz, K.M., Schmeling, S., Jehmlich, N., von Bergen, M., Harms, H., Kleinsteuber, S., Vogt, C., Fuchs, G. (2009):
  Phenol degradation in the strictly anaerobic iron-reducing bacterium Geobacter metallireducens GS-15
  Appl. Environ. Microb. 75 (12), 3912 - 3919 10.1128/aem.01525-08
• Seifert, J., Jehmlich, N., Schmidt, F., Taubert, M., von Bergen, M., Richnow, H.-H., Vogt, C. (2009):
  Protein-stable isotope probing (Protein-SIP) for simultaneous identification of bacterial species and determination of metabolic activity
  Geochim. Cosmochim. Acta 73 (13 Suppl.), A1191 10.1016/j.gca.2009.05.015
• von Bergen, M., Eidner, A., Schmidt, F., Murugaiyan, J., Wirth, H., Binder, H., Maier, T., Roesler, U. (2009):
  Identification of harmless and pathogenic algae of the genus Prototheca by MALDI-MS
  Proteom. Clin. Appl. 3 (7), 774 - 787 10.1002/prca.200780138
• Wischgoll, S., Taubert, M., Peters, F., Jehmlich, N., von Bergen, M., Boll, M. (2009):
  Decarboxylating and nondecarboxylating glutaryl-coenzyme A dehydrogenases in the aromatic metabolism of obligately anaerobic bacteria
  J. Bacteriol. 191 (13), 4401 - 4409 10.1128/JB.00205-09

2008 (14)

• Andronesi, O.C., von Bergen, M., Biernat, J., Seidel, K., Griesinger, C., Mandelkow, E., Baldus, M. (2008):
  Characterization of Alzheimer's-like paired helical filaments from the core domain of tau protein using solid-state NMR spectroscopy
  J. Am. Chem. Soc. 130 (18), 5922 - 5928 10.1021/ja7100517
• Benndorf, D., Müller, A., Bock, K., Manuwald, O., Herbarth, O., von Bergen, M. (2008):
  Identification of spore allergens from the indoor mould Aspergillus versicolor
  Allergy 63 (4), 454 - 460 10.1111/j.1398-9995.2007.01603.x
• Bock, K., Benndorf, D., Müller, A., Bauer, M., von Bergen, M. (2008):
  Identification of allergens from the indoor mold Aspergillus versicolor
  Allergy 63 (Suppl. 88), 530 - 531 10.1111/j.1398-9995.2008.01760.x
• Georgieva, D., Risch, M., Kardas, A., Buck, F., von Bergen, M., Betzel, C. (2008):
  Comparative Analysis of the Venom Proteomes of Vipera ammodytes ammodytes and Vipera ammodytes meridionalis
  J. Proteome Res. 7 (3), 866 - 886 10.1021/pr070376c
• Hehemann, J.H., Redecke, L., Murugaiyan, J., von Bergen, M., Betzel, C., Saborowski, R. (2008):
  Autoproteolytic stability of a trypsin from the marine crab Cancer pagurus
  Biochem. Biophys. Res. Commun. 370 (4), 566 - 571 10.1016/j.bbrc.2008.03.128
• Jeganathan, S., von Bergen, M., Mandelkow, E. (2008):
  In search for the pathological conformation of tau protein
  Eur. J. Cell Biol. 87 (Suppl. 1), 49 10.1016/j.ejcb.2008.01.004
• Jeganathan, S., von Bergen, M., Mandelkow, E.-M., Mandelkow, E. (2008):
  The natively unfolded character of tau and its aggregation to Alzheimer-like paired helical filaments
  Biochemistry 47 (40), 10526 - 10539 10.1021/bi800783d
• Jehmlich, N., Schmidt, F., Hartwich, M., von Bergen, M., Richnow, H.H., Vogt, C. (2008):
  Incorporation of carbon and nitrogen atoms into proteins measured by protein-based stable isotope probing (Protein-SIP)
  Rapid Commun. Mass Spectrom. 22 (18), 2889 - 2897 10.1002/rcm.3684
• Jehmlich, N., Schmidt, F., von Bergen, M., Richnow, H.H., Vogt, C. (2008):
  Protein-based stable isotope probing (Protein-SIP) reveals active species within anoxic mixed cultures
  ISME J. 2 (11), 1122 - 1133 10.1038/ismej.2008.64
• Johannes, J., Bluschke, A., Jehmlich, N., von Bergen, M., Boll, M. (2008):
  Purification and characterization of active-site components of the putative p-cresol methylhydroxylase membrane complex from Geobacter metallireducens
  J. Bacteriol. 190 (19), 6493 - 6500 10.1128/jb.00790-08
• Rehders, D., Claasen, B., Redecke, L., Reibe, C., Buschke, A., Jehmlich, N., von Bergen, M., Betzel, C., Meyer, B. (2008):
  Aggregation of the human cellular prion protein (PrPC) is quantitatively inhibited by the octapeptide NMHRVPNQ
  J. Pept. Sci. 14 (S1), 125 - 126 10.1002/psc.1090
• Röder-Stolinski, C., Feltens, R., Fischäder, G., Kohse, F., von Bergen, M., Mörbt, N., Oostingh, G., Eder, K., Duschl, A., Lehmann, I. (2008):
  Oxidative stress and NF-kB activation are induced by styrene in human lung epithelial cells
  Allergy 63 (Suppl. 88), 36 - 37 10.1111/j.1398-9995.2008.01758.x
• Röder-Stolinski, C., Fischäder, G., Oostingh, G.J., Feltens, R., Kohse, F., von Bergen, M., Mörbt, N., Eder, K., Duschl, A., Lehmann, I. (2008):
  Styrene induces an inflammatory response in human lung epithelial cells via oxidative stress and NF-κB activation
  Toxicol. Appl. Pharmacol. 231 (2), 241 - 247 10.1016/j.taap.2008.04.010
• Thiele, B., Rieder, O., Jehmlich, N., von Bergen, M., Müller, M., Boll, M. (2008):
  Aromatizing cyclohexa-1,5-diene-1-carbonyl-coenzyme A oxidase. Characterization and its role in anaerobic aromatic metabolism
  J. Biol. Chem. 283 (30), 20713 - 20721 10.1074/jbc.m802841200

2007 (13)

• Benndorf, D., Balcke, G.U., Harms, H., von Bergen, M. (2007):
  Functional metaproteome analysis of protein extracts from contaminated soil and groundwater
  ISME J. 1 (3), 224 - 234 10.1038/ismej.2007.39
• Fischer, D., Mukrasch, M.D., von Bergen, M., Klos-Witkowska, A., Biernat, J., Griesinger, C., Mandelkow, E., Zweckstetter, M. (2007):
  Structural and microtubule binding properties of tau mutants of frontotemporal dementias
  Biochemistry 46 (10), 2574 - 2582 10.1021/bi061318s
• Gündel, U., Benndorf, D., von Bergen, M., Altenburger, R., Küster, E. (2007):
  Vitellogenin cleavage products as indicators for toxic stress in zebra fish embryos: a proteomic approach
  Proteomics 7 (24), 4541 - 4554 10.1002/pmic.200700381
• Heine, F., Wiacek, C., Benndorf, D., Sträuber, H., Stahl, F., von Bergen, M., Harms, H., Müller, S. (2007):
  Evidence of flocculation in brewing yeast strains by flow cytometry, proteome and mRNA profiling
  Cytom. Part A 71A (9), 761 10.1002/cyto.a.20451
• Heine, F., Wiacek, C., Benndorf, D., Sträuber, H., Stahl, F., von Bergen, M., Harms, H., Müller, S. (2007):
  Evidence of flocculation in brewing yeast strains by flow cytometry, proteome and mRNA profiling
  Cytom. Part A 71A (7), 513 10.1002/cyto.a.20421
• Kellner, H., Jehmlich, N., Benndorf, D., Hoffmann, R., Rühl, M., Hoegger, P.J., Majcherczyk, A., Kües, U., von Bergen, M., Buscot, F. (2007):
  Detection, quantification and identification of fungal extracellular laccases using polyclonal antibody and mass spectrometry
  Enzyme Microb. Technol. 41 (6-7), 694 - 701 10.1016/j.enzmictec.2007.06.002
• Mandelkow, E., von Bergen, M., Biernat, J., Mandelkow, E.-M. (2007):
  Structural principles of tau and the paired helical filaments of Alzheimer's disease
  Brain Pathol. 17 (1), 83 - 90 10.1111/j.1750-3639.2007.00053.x
• Martin, C., Pecyna, M., Kellner, H., Jehmlich, N., Junghanns, C., Benndorf, D., von Bergen, M., Schlosser, D. (2007):
  Purification and biochemical characterization of a laccase from the aquatic fungus Myrioconium sp. UHH 1-13-18-4 and molecular analysis of the laccase-encoding gene
  Appl. Microbiol. Biotechnol. 77 (3), 613 - 624 10.1007/s00253-007-1207-2
• Mukrasch, M.D., Markwick, P., von Bergen, M., Bernado, P., Griesinger, C., Mandelkow, E., Zweckstetter, M., Blackledge, M. (2007):
  Highly populated turn conformations in natively unfolded tau protein identified from residual dipolar couplings and molecular simulation
  J. Am. Chem. Soc. 129 (16), 5235 - 5243 10.1021/ja0690159
• Mukrasch, M.D., von Bergen, M., Biernat, J., Fischer, D., Griesinger, C., Mandelkow, E., Zweckstetter, M. (2007):
  The "jaws" of the tau-microtubule interaction
  J. Biol. Chem. 282 (16), 12230 - 12239 10.1074/jbc.M607159200
• Redecke, L., von Bergen, M., Clos, J., Konarev, P.V., Svergun, D.I., Fittschen, U.E., Broekaert, J.A., Bruns, O., Georgieva, D., Mandelkow, E., Genov, N., Betzel, C. (2007):
  Structural characterization of β-sheeted oligomers formed on the pathway of oxidative prion protein aggregation in vitro
  J. Struct. Biol. 157 (2), 308 - 320 10.1016/j.jsb.2006.06.013
• Santos, P.M., Roma, V., Benndorf, D., von Bergen, M., Harms, H., Sá-Correia, I. (2007):
  Mechanistic insights into the global response to phenol in the phenol-biodegrading strain Pseudomonas sp. M1 revealed by quantitative proteomics
  OMICS 11 (3), 233 - 251 10.1089/omi.2007.0009
• Schäfer, F., Breuer, U., Benndorf, D., von Bergen, M., Harms, H., Müller, R.H. (2007):
  Growth of Aquincola tertiaricarbonis L108 on tert-butyl alcohol leads to the induction of a phthalate dioxygenase-related protein and its associated oxidoreductase subunit
  Eng. Life Sci. 7 (5), 512 - 519 10.1002/elsc.200700011

2006 (6)

• Georgieva, D., Schwark, D., von Bergen, M., Redecke, L., Genov, N., Betzel, C. (2006):
  Interactions of recombinant prions with compounds of therapeutical significance
  Biochem. Biophys. Res. Commun. 344 (2), 463 - 470 10.1016/j.bbrc.2006.03.135
• Jeganathan, S., von Bergen, M., Brutlach, H., Steinhoff, H.J., Mandelkow, E. (2006):
  Global hairpin folding of tau in solution
  Biochemistry 45 (7), 2283 - 2293 10.1021/bi0521543
• Khlistunova, I., Biernat, J., Wang, Y.P., Pickhardt, M., von Bergen, M., Gazova, Z., Mandelkow, E., Mandelkow, E.-M. (2006):
  Inducible expression of tau repeat domain in cell models of tauopathy - Aggregation is toxic to cells but can be reversed by inhibitor drugs
  J. Biol. Chem. 281 (2), 1205 - 1214 10.1074/jbc.M507753200
• Mandelkow, E., Pickhardt, M., Gazova, Z., von Bergen, M., Biernat, J., Khlistunova, I., Wang, Y.P., Hascher, A., Mandelkow, E.-M. (2006):
  Inhibition of tau aggregation and disaggregation of PHFs by low MW compounds in vitro and in cells
  Neurobiol. Aging 27 (Suppl. 1), S13 10.1016/j.jalz.2006.05.1573
• von Bergen, M., Barghorn, S., Jeganathan, S., Mandelkow, E.-M., Mandelkow, E. (2006):
  Spectroscopic approaches to the conformation of tau protein in solution and in paired helical filaments
  Neurodegener. Dis. 3 (4-5), 197 - 206 10.1159/000095257
• von Bergen, M., Barghorn, S., Müller, S.A., Pickhardt, M., Biernat, J., Mandelkow, E.-M., Davies, P., Aebi, U., Mandelkow, E. (2006):
  The core of tau-paired helical filaments studied by scanning transmission electron microscopy and limited proteolysis
  Biochemistry 45 (20), 6446 - 6457 10.1021/bi052530j

2005 (4)

• Mandelkow, E., von Bergen, M., Pickhardt, M., Gazova, Z., Khlistunova, I., Wang, Y.P., Biernat, J., Mandelkow, E.-M. (2005):
  Tau aggregation and Tau aggregation inhibitors
  J. Neurochem. 94 (Suppl. 2), 213 - 214 10.1111/j.1474-1644.2005.03326.x
• Mukrasch, M.D., Biernat, J., von Bergen, M., Griesinger, C., Mandelkow, E., Zweckstetter, M. (2005):
  Sites of tau important for aggregation populate β-structure and bind to microtubules and polyanions
  J. Biol. Chem. 280 (26), 24978 - 24986 10.1074/jbc.M501565200
• Pickhardt, M., Gazova, Z., von Bergen, M., Khlistunova, I., Wang, Y.P., Hascher, A., Mandelkow, E.-M., Biernat, J., Mandelkow, E. (2005):
  Anthraquinones inhibit tau aggregation and dissolve Alzheimer's paired helical filaments in vitro and in cells
  J. Biol. Chem. 280 (5), 3628 - 3635 10.1074/jbc.M410984200
• von Bergen, M., Barghorn, S., Biernat, J., Mandelkow, E.-M., Mandelkow, E. (2005):
  Tau aggregation is driven by a transition from random coil to beta sheet structure
  Biochim. Biophys. Acta-Mol. Basis Dis. 1739 (2-3), 158 - 166 10.1016/j.bbadis.2004.09.010

2004 (5)

• Mandelkow, E., von Bergen, M., Barghorn, S., Li, L., Biernat, J., Mandelkow, E.-M. (2004):
  Principles of assembly of tau protein into Alzheimer paired helical filaments
  Neurobiol. Aging 25 (Suppl. 2), S47 10.1016/S0197-4580(04)80157-X
• Mandelkow, E., von Bergen, M., Pickhardt, M., Biernat, J., Mandelkow, E.-M. (2004):
  Treatment of tauopathies: How to approach it?
  Neurobiol. Aging 25 (Suppl. 1), S17 10.1016/j.neurobiolaging.2003.12.002
• Meinhold-Heerlein, I., Mundhenke, C., Rosel, F., Jonat, W., Nagasaki, K., von Bergen, M., Maass, N. (2004):
  Protein profiling utilizing SELDI technology may detect ductal carcinoma in situ (DCIS) with high reliability in patient's serum
  J. Clin. Oncol. 22 (14S), 9654 10.1200/jco.2004.22.90140.9654
• Pickhardt, M., Gazova, Z., von Bergen, M., Wang, Y.P., Khlistunova, I., Hascher, A., Biernat, J., Mandelkow, E.-M. (2004):
  Search for small molecule inhibitors of tau aggregation into Alzheimer paired helical filaments
  Neurobiol. Aging 25 (Suppl. 2), S428 10.1016/S0197-4580(04)81407-6
• von Bergen, M., Li, L., Mandelkow, E. (2004):
  Conformation and stability of tau and Alzheimer paired helical filaments probed by tryptophan scanning mutagenesis
  Neurobiol. Aging 25 (Suppl. 2), S419 10.1016/S0197-4580(04)81375-7

2002 (6)

• Barghorn, S., von Bergen, M., Li, L., Biernat, J., Mandelkow, E.-M., Mandelkow, E. (2002):
  Some mutations of tau protein in frontotemporal dementia (FTDP-17) promote aggregation of paired helical filaments by enhancing local beta structure
  Neurobiol. Aging 23 (Suppl. 1), S528 10.1016/S0197-4580(02)00052-0
• Li, L., von Bergen, M., Biernat, J., Mandelkow, E.-M., Mandelkow, E. (2002):
  Intrinsic fluorescence of tau as a probe of conformation and aggregation of Alzheimer paired helical filaments
  Mol. Biol. Cell 13 (Suppl. S), 325A
• Li, L., von Bergen, M., Biernat, J., Mandelkow, E.-M., Mandelkow, E. (2002):
  Intrinsic fluorescence of tau as a marker for PHF aggregation and PHF inhibitors
  Neurobiol. Aging 23 (Suppl. 1), S292 10.1016/S0197-4580(02)00052-0
• Li, L., von Bergen, M., Mandelkow, E.-M., Mandelkow, E. (2002):
  Structure, stability, and aggregation of paired helical filaments from tau protein and FTDP-17 mutants probed by tryptophan scanning mutagenesis
  J. Biol. Chem. 277 (44), 41390 - 41400 10.1074/jbc.M206334200
• Mandelkow, E., von Bergen, M., Li, L., Barghorn, S., Biernat, J., Mandelkow, E.-M. (2002):
  Principles underlying the formation of Alzheimer paired helical filaments from tau protein: Hotspots of beta structure embedded in a random coil environment
  Neurobiol. Aging 23 (Suppl. 1), S551 10.1016/S0197-4580(02)00052-0
• Pickhardt, M., von Bergen, M., Li, L., Mandelkow, E.-M., Mandelkow, E. (2002):
  Searching for compounds that break Alzheimer-paired helical filaments
  Neurobiol. Aging 23 (Suppl. 1), S507 10.1016/S0197-4580(02)00052-0

2001 (3)

• Mandelkow, E.-M., Stamer, K., Biernat, J., Trinczek, B., von Bergen, M., Mandelkow, E. (2001):
  Tau protein and Alzheimer's disease: aggregation; phosphorylation; and role in axonal traffic and neurite outgrowth
  J. Neurochem. 77 (Suppl. 1), 1 10.1111/j.1471-4159.2001.t01-13-00002.x
• von Bergen, M., Barghorn, S., Li, L., Marx, A., Biernat, J., Mandelkow, E.-M., Mandelkow, E. (2001):
  Mutations of tau protein in frontotemporal dementia promote aggregation of paired helical filaments by enhancing local beta-structure
  J. Biol. Chem. 276 (51), 48165 - 48174 10.1074/jbc.M105196200
• von Bergen, M., Li, L., Barghorn, S., Biernat, J., Mandelkow, E.-M., Mandelkow, E. (2001):
  Mutations of tau protein in frontotemporal dementia (FTDP-17) promote aggregation of paired helical filaments by enhancing local β-structure
  Mol. Biol. Cell 12 (Suppl. S), 308A

2000 (4)

• Barghorn, S., Zheng-Fischhofer, Q., Ackmann, M., Biernat, J., von Bergen, M., Mandelkow, E.-M., Mandelkow, E. (2000):
  Structure, microtubule interactions, and paired helical filament aggregation by tau mutants of frontotemporal dementias
  Biochemistry 39 (38), 11714 - 11721 10.1021/bi000850r
• Friedhoff, P., von Bergen, M., Mandelkow, E.-M., Mandelkow, E. (2000):
  Structure of tau protein and assembly into paired helical filaments
  Biochim. Biophys. Acta-Mol. Basis Dis. 1502 (1), 122 - 132 10.1016/S0925-4439(00)00038-7
• von Bergen, M., Friedhoff, P., Biernat, J., Heberle, J., Mandelkow, E.-M., Mandelkow, E. (2000):
  Assembly of τ protein into Alzheimer paired helical filaments depends on a local sequence motif (³⁰⁶VQIVYK³¹¹) forming β structure
  Mol. Biol. Cell 11 (Suppl. S), 363A
• von Bergen, M., Friedhoff, P., Biernat, J., Heberle, J., Mandelkow, E.-M., Mandelkow, E. (2000):
  Assembly of τ protein into Alzheimer paired helical filaments depends on a local sequence motif (³⁰⁶VQIVYK³¹¹) forming β structure
  Proc. Natl. Acad. Sci. U.S.A. 97 (10), 5129 - 5134 10.1073/pnas.97.10.5129