Prof. Dr. Martin von Bergen

Research Interests in Environmental Health

Research Interests in Microbiome Biology

CV

Publications

2023 (4)

• Gurbuz, B., Guldiken, N., Reuken, P., Fu, L., Remih, K., Preisinger, C., Brůha, R., Leníček, M., Petrtýl, J., Reissing, J., Aly, M., Fromme, M., Zhou, B., Karkossa, I., Schubert, K., von Bergen, M., Stallmach, A., Bruns, T., Strnad, P. (2023):
  Biomarkers of hepatocellular synthesis in patients with decompensated cirrhosis
  Hepatol. Int. 17 (3), 698 - 708
  full text (doi)
• Khan, N., Muge, E., Mulaa, F.J., Wamalwa, B., von Bergen, M., Jehmlich, N., Wick, L.Y. (2023):
  Mycelial nutrient transfer promotes bacterial co-metabolic organochlorine pesticide degradation in nutrient-deprived environments
  ISME J. 17 , 570 - 578
  full text (doi)
• Uthoff, C., Homsi, M.N., von Bergen, M. (2023):
  Acoustic and vibration monitoring of honeybee colonies for beekeeping-relevant aspects of presence of queen bee and swarming
  Comput. Electron. Agric. 205 , art. 107589
  full text (doi)
• Zhang, L., Toplak, M., Saleem-Batcha, R., Höing, L., Jakob, R., Jehmlich, N., von Bergen, M., Maier, T., Teufel, R. (2023):
  Bacterial dehydrogenases facilitate oxidative inactivation and bioremediation of chloramphenicol
  ChemBioChem 24 (2), e202200632
  full text (doi)

2022 (30)

• Brede, M., Haange, S.-B., Riede, S., Engelmann, B., Jehmlich, N., Rolle-Kampczyk, U.E., Rohn, K., Von Soosten, D., von Bergen, M., Breves, G. (2022):
  Effects of different formulations of glyphosate on rumen microbial metabolism and microbial community composition in the Rumen Simulation Technique system
  Front. Microbiol. 13 , art. 873101
  full text (doi)
• Buchenauer, L., Junge, K.M., Haange, S.-B., Simon, J.C., von Bergen, M., Hoh, A.-L., Aust, G., Zenclussen, A.C., Stangl, G.I., Polte, T. (2022):
  Glyphosate differentially affects the allergic immune response across generations in mice
  Sci. Total Environ. 850 , art. 157973
  full text (doi)
• Dey, P., Malik, A., Singh, D.K., Haange, S.-B., von Bergen, M., Jehmlich, N. (2022):
  Insight to the molecular mechanisms underpinning the mycoremediation of multiple metals by proteomic technique
  Front. Microbiol. 13 , art. 872576
  full text (doi)
• Farag, M.A., Hariri, M.L.M., Ehab, A., Homsi, M.N., Zhao, C., von Bergen, M. (2022):
  Cocoa seeds and chocolate products interaction with gut microbiota; mining microbial and functional biomarkers from mechanistic studies, clinical trials and 16S rRNA amplicon sequencing
  Crit. Rev. Food Sci. Nutr.
  full text (doi)
• Fries, C.M., Haange, S.-B., Rolle-Kampczyk, U., Till, A., Lammert, M., Grasser, L., Medawar, E., Dietrich, A., Horstmann, A., von Bergen, M., Fenske, W.K. (2022):
  Metabolic profile and metabolite analyses in extreme weight responders to gastric bypass surgery
  Metabolites 12 (5), art. 417
  full text (doi)
• Geesink, P., Taubert, M., Jehmlich, N., von Bergen, M., Küsel, K. (2022):
  Bacterial necromass is rapidly metabolized by heterotrophic bacteria and supports multiple trophic levels of the groundwater microbiome
  Microbiol. Spectr. 10 (4), e00437
  full text (doi)
• Grosjean, I., Roméo, B., Domdom, M.-A., Belaid, A., D’Andréa, G., Guillot, N., Gherardi, R.K., Gal, J., Milano, G., Marquette, C.H., Hung, R.J., Landi, M.T., Han, Y., Brest, P., von Bergen, M., Klionsky, D.J., Amos, C.I., Hofman, P., Mograbi, B. (2022):
  Autophagopathies: from autophagy gene polymorphisms to precision medicine for human diseases
  Autophagy 18 (11), 2519 - 2536
  full text (doi)
• Gwak, J.-H., Awala, S.I., Nguyen, N.-L., Yu, W.-J., Yang, H.-Y., von Bergen, M., Jehmlich, N., Kits, K.D., Loy, A., Dunfield, P.F., Dahl, C., Hyun, J.-H., Rhee, S.-K. (2022):
  Sulfur and methane oxidation by a single microorganism
  Proc. Natl. Acad. Sci. U.S.A. 119 (32), e2114799119
  full text (doi)
• Haange, S.-B., Till, A., Bergh, P.-O., Fauler, G., Gigl, M., Löfgren-Sandblom, A., Schaap, F.G., Clavel, T., Trautwein, C., Fenske, W., Kleigrewe, K., Marschall, H.-U., Olde Damink, S.W.M., Moustafa, T., von Bergen, M., Rolle-Kampczyk, U. (2022):
  Ring trial on quantitative assessment of bile acids reveals a method- and analyte-specific accuracy and reproducibility
  Metabolites 12 (7), art. 583
  full text (doi)
• Jacoby, C., Ebenau-Jehle, C., Saum, K., Jehmlich, N., von Bergen, M., Brüls, T., Boll, M. (2022):
  Genes and enzymes involved in the biodegradation of the quaternary carbon compound pivalate in the denitrifying Thauera humireducens strain PIV-1
  Environ. Microbiol. 24 (7), 3181 - 3194
  full text (doi)
• Jensen Pedersen, K., Haange, S.-B., Žížalová, K., Viehof, A., Clavel, T., Leniček, M., Engelmann, B., Wick, L.Y., Schaap, F.G., Jehmlich, N., Rolle-Kampczyk, U., von Bergen, M. (2022):
  Eggerthella lenta DSM 2243 alleviates bile acid stress response in Clostridium ramosum and Anaerostipes caccae by transformation of bile acids
  Microorganisms 10 (10), art. 2025
  full text (doi)
• Junge, K.M., Buchenauer, L., Strunz, S., Seiwert, B., Thürmann, L., Rolle-Kampczyk, U.E., Röder, S., Borte, M., Kiess, W., von Bergen, M., Simon, J.C., Zenclussen, A.C., Schöneberg, T., Stangl, G.I., Herberth, G., Lehmann, I., Reemtsma, T., Polte, T. (2022):
  Effects of exposure to single and multiple parabens on asthma development in an experimental mouse model and a prospective cohort study
  Sci. Total Environ. 814 , art. 152676
  full text (doi)
• Kage, P., Schubert, K., Treudler, R., Simon, J.-C., von Bergen, M., Tomm, J. (2022):
  Identification of new potential allergens from green-lipped mussel (Perna canaliculus)
  Iran. J. Allergy Asthma Immunol. 21 (6), 711 - 715
  full text (doi)
• Kaplan, A., Zelicha, H., Meir, A.Y., Rinott, E., Tsaban, G., Levakov, G., Prager, O., Salti, M., Yovell, Y., Ofer, J., Huhn, S., Beyer, F., Witte, V., Villringer, A., Meiran, N., Emesh, T.B., Kovacs, P., von Bergen, M., Ceglarek, U., Blüher, M., Stumvoll, M., Hu, F.B., Stampfer, M.J., Friedman, A., Shelef, I., Avidan, G., Shai, I. (2022):
  The effect of a high-polyphenol Mediterranean diet (Green-MED) combined with physical activity on age-related brain atrophy: the Dietary Intervention Randomized Controlled Trial Polyphenols Unprocessed Study (DIRECT PLUS)
  Am. J. Clin. Nutr. 115 (5), 1270 - 1281
  full text (doi)
• Krause, J.L., Engelmann, B., Nunes da Rocha, U., Pierzchalski, A., Chang, H.D., Zenclussen, A.C., von Bergen, M., Rolle-Kampczyk, U., Herberth, G. (2022):
  MAIT cell activation is reduced by direct and microbiota-mediated exposure to bisphenols
  Environ. Int. 158 , art. 106985
  full text (doi)
• Krieg, L., Didt, K., Karkossa, I., Bernhart, S.H., Kehr, S., Subramanian, N., Lindhorst, A., Schaudinn, A., Tabei, S., Keller, M., Stumvoll, M., Dietrich, A., von Bergen, M., Stadler, P.F., Laurencikiene, J., Krüger, M., Blüher, M., Gericke, M., Schubert, K., Kovacs, P., Chakaroun, R., Massier, L. (2022):
  Multiomics reveal unique signatures of human epiploic adipose tissue related to systemic insulin resistance
  Gut 71 (11), 2179 - 2193
  full text (doi)
• Lentz, L.S., Stutz, A.J., Meyer, N., Schubert, K., Karkossa, I., von Bergen, M., Zenclussen, A.C., Schumacher, A. (2022):
  Human chorionic gonadotropin promotes murine Treg cells and restricts pregnancy-harmful proinflammatory Th17 responses
  Front. Immunol. 13 , art. 989247
  full text (doi)
• Menanteau-Ledouble, S., Skov, J., Lukassen, M.B., Rolle-Kampczyk, U., Haange, S.-B., Dalsgaard, I., von Bergen, M., Nielsen, J.L. (2022):
  Modulation of gut microbiota, blood metabolites, and disease resistance by dietary β-glucan in rainbow trout (Oncorhynchus mykiss)
  Animal Microbiome 4 , art. 358
  full text (doi)
• Münzker, J., Haase, N., Till, A., Sucher, R., Haange, S.-B., Nemetschke, L., Gnad, T., Jäger, E., Chen, J., Riede, S.J., Chakaroun, R., Massier, L., Kovacs, P., Ost, M., Rolle-Kampczyk, U., Jehmlich, N., Weinert, J., Heiker, J.T., Klöting, N., Seeger, G., Morawski, M., Keitel, V., Pfeifer, A., von Bergen, M., Heeren, J., Krügel, U., Fenske, W.K. (2022):
  Functional changes of the gastric bypass microbiota reactivate thermogenic adipose tissue and systemic glucose control via intestinal FXR-TGR5 crosstalk in diet-induced obesity
  Microbiome 10 , art. 96
  full text (doi)
• Murthy, S., Karkossa, I., Schmidt, C., Hoffmann, A., Hagemann, T., Rothe, K., Seifert, O., Anderegg, U., von Bergen, M., Schubert, K., Rossol, M. (2022):
  Danger signal extracellular calcium initiates differentiation of monocytes into SPP1/osteopontin-producing macrophages
  Cell Death Dis. 13 , art. 53
  full text (doi)
• Nagel, M., Moretti, R., Paschke, R., von Bergen, M., Meiler, J., Kalkhof, S. (2022):
  Integrative model of the FSH receptor reveals the structural role of the flexible hinge region
  Structure 30 (10), 1424 - 1431.e3
  full text (doi)
• Riesbeck, S., Petruschke, H., Rolle-Kampczyk, U., Schori, C., Ahrens, C.H., Eberlein, C., Heipieper, H.J., von Bergen, M., Jehmlich, N. (2022):
  Adaptation and resistance: How Bacteroides thetaiotaomicron copes with the bisphenol A substitute bisphenol F
  Microorganisms 10 (8), art. 1610
  full text (doi)
• Sallam, I.E., Rolle-Kampczyk, U., Schäpe, S.S., Zaghloul, S.S., El Dine, R.S., Shao, P., von Bergen, M., Farag, M.A. (2022):
  Evaluation of antioxidant activity and biotransformation of Opuntia ficus fruit: The effect of in vitro and ex vivo gut microbiota metabolism
  Molecules 27 (21), art. 7568
  full text (doi)
• Schaffert, A., Karkossa, I., Ueberham, E., Schlichting, R., Walter, K., Arnold, J., Blüher, M., Heiker, J.T., Lehmann, J., Wabitsch, M., Escher, B.I., von Bergen, M., Schubert, K. (2022):
  Di-(2-ethylhexyl) phthalate substitutes accelerate human adipogenesis through PPARγ activation and cause oxidative stress and impaired metabolic homeostasis in mature adipocytes
  Environ. Int. 164 , art. 107279
  full text (doi)
• Scholz, S., Brack, W., Escher, B.I., Hackermüller, J., Liess, M., von Bergen, M., Wick, L.Y., Zenclussen, A.C., Altenburger, R. (2022):
  The EU chemicals strategy for sustainability: an opportunity to develop new approaches for hazard and risk assessment
  Arch. Toxicol. 96 (8), 2381 - 2386
  full text (doi)
• Scholz, S., Nichols, J.W., Escher, B.I., Ankley, G.T., Altenburger, R., Blackwell, B., Brack, W., Burkhard, L., Collette, T.W., Doering, J.A., Ekman, D., Fay, K., Fischer, F., Hackermüller, J., Hoffman, J.C., Lai, C., Leuthold, D., Martinovic-Weigelt, D., Reemtsma, T., Pollesch, N., Schroeder, A., Schüürmann, G., von Bergen, M. (2022):
  The eco‐exposome concept: Supporting an integrated assessment of mixtures of environmental chemicals
  Environ. Toxicol. Chem. 41 (1), 30 - 45
  full text (doi)
• Schöne, C., Poehlein, A., Jehmlich, N., Adlung, N., Daniel, R., von Bergen, M., Scheller, S., Rother, M. (2022):
  Deconstructing Methanosarcina acetivorans into an acetogenic archaeon
  Proc. Natl. Acad. Sci. U.S.A. 119 (2), e2113853119
  full text (doi)
• Schroeter, S.A., Eveillard, D., Chaffron, S., Zoppi, J., Kampe, B., Lohmann, P., Jehmlich, N., von Bergen, M., Sanchez-Arcos, C., Pohnert, G., Taubert, M., Küsel, K., Gleixner, G. (2022):
  Microbial community functioning during plant litter decomposition
  Sci. Rep. 12 , art. 7451
  full text (doi)
• Taubert, M., Overholt, W.A., Heinze, B.M., Matanfack, G.A., Houhou, R., Jehmlich, N., von Bergen, M., Rösch, P., Popp, J., Küsel, K. (2022):
  Bolstering fitness via CO₂ fixation and organic carbon uptake: mixotrophs in modern groundwater
  ISME J. 16 (4), 1153 - 1162
  full text (doi)
• Torow, N., Li, R., Hitch, T., Mingels, C., Al Bounny, S., van Best, N., Stange, E.-L., Benabid, A., Rüttger, L., Gadermayr, M., Runge, S., Treichel, N., Merhof, D., Rosshart, S., Jehmlich, N., von Bergen, M., Heymann, F., Clavel, T., Tacke, F., Lelouard, H., Costa, I. (2022):
  Neonatal Peyer's patch cDC activation as a pacemaker of postnatal immune maturation
  Eur. J. Immunol. 52 (S1), 52 - 52
  full text (doi)

2021 (39)

• Anders, J., Petruschke, H., Jehmlich, N., Haange, S.-B., von Bergen, M., Stadler, P.F. (2021):
  A workflow to identify novel proteins based on the direct mapping of peptide-spectrum-matches to genomic locations
  BMC Bioinformatics 22 , art. 277
  full text (doi)
• Bedulina, D., Drozdova, P., Gurkov, A., von Bergen, M., Stadler, P.F., Luckenbach, T., Timofeyev, M., Kalkhof, S. (2021):
  Proteomics reveals sex-specific heat shock response of Baikal amphipod Eulimnogammarus cyaneus
  Sci. Total Environ. 763 , art. 143008
  full text (doi)
• Chen, J., Haase, N., Haange, S.-B., Sucher, R., Münzker, J., Jäger, E., Schischke, K., Seyfried, F., von Bergen, M., Hankir, M.K., Krügel, U., Fenske, W.K. (2021):
  Roux-en-Y gastric bypass contributes to weight loss-independent improvement in hypothalamic inflammation and leptin sensitivity through gut-microglia-neuron-crosstalk
  Mol. Metab. 48 , art. 101214
  full text (doi)
• Engel, K.M., Baumann, S., Blaurock, J., Rolle-Kampczyk, U., Schiller, J., von Bergen, M., Grunewald, S. (2021):
  Differences in the sperm metabolomes of smoking and nonsmoking men
  Biol. Reprod. 105 (6), 1484 - 1493
  full text (doi)
• Farag, M.A., von Bergen, M., Saleh, B.M., Homsi, M.N., Abd El-Al, M.S. (2021):
  How do green and black coffee brews and bioactive interaction with gut microbiome affect its health outcomes? Mining evidence from mechanistic studies, metagenomics and clinical trials
  Trends Food Sci. Technol. 118 (Part B), 920 - 937
  full text (doi)
• Frissen, M., Liao, L., Schneider, K.M., Djudjaj, S., Haybaeck, J., Wree, A., Rolle-Kampczyk, U., von Bergen, M., Latz, E., Boor, P., Trautwein, C. (2021):
  Bidirectional role of NLRP3 during acute and chronic cholestatic liver injury
  Hepatology 73 (5), 1836 - 1854
  full text (doi)
• Genath, A., Petruschke, H., von Bergen, M., Einspanier, R. (2021):
  Influence of formic acid treatment on the proteome of the ectoparasite Varroa destructor
  PLOS One 16 (10), e0258845
  full text (doi)
• Greiner–Haas, F., von Bergen, M., Sawers, R.G., Lechner, U., Türkowsky, D. (2021):
  Changes of the proteome and acetylome during transition into the stationary phase in the organohalide-respiring Dehalococcoides mccartyi strain CBDB1
  Microorganisms 9 (2), art. 365
  full text (doi)
• Großkopf, H., Vogel, S., Müller, C.D., Köhling, S., Dürig, J.-N., Möller, S., Schnabelrauch, M., Rademann, J., Hempel, U., von Bergen, M., Schubert, K. (2021):
  Identification of intracellular glycosaminoglycan-interacting proteins by affinity purification mass spectrometry
  Biol. Chem. 402 (11), 1427 - 1440
  full text (doi)
• Großkopf, H., Walter, K., Karkossa, I., von Bergen, M., Schubert, K. (2021):
  Non-genomic AhR-signaling modulates the immune response in endotoxin-activated macrophages after activation by the environmental stressor BaP
  Front. Immunol. 12 , art. 620270
  full text (doi)
• Höper, T., Siewert, K., Dumit, V.I., von Bergen, M., Schubert, K., Haase, A. (2021):
  The contact allergen NiSO₄ triggers a distinct molecular response in primary human dendritic cells compared to bacterial LPS
  Front. Immunol. 12 , art. 644700
  full text (doi)
• Junge, K.M., Buchenauer, L., Elter, E., Butter, K., Kohajda, T., Herberth, G., Röder, S., Borte, M., Kiess, W., von Bergen, M., Simon, J.C., Rolle-Kampczyk, U.E., Lehmann, I., Gminski, R., Ohlmeyer, M., Polte, T. (2021):
  Wood emissions and asthma development: Results from an experimental mouse model and a prospective cohort study
  Environ. Int. 151 , art. 106449
  full text (doi)
• Karkossa, I., Bannuscher, A., Hellack, B., Wohlleben, W., Laloy, J., Stan, M.S., Dinischiotu, A., Wiemann, M., Luch, A., Haase, A., von Bergen, M., Schubert, K. (2021):
  Nanomaterials induce different levels of oxidative stress, depending on the used model system: Comparison of in vitro and in vivo effects
  Sci. Total Environ. 801 , art. 149538
  full text (doi)
• Karkossa, I., Bannuscher, A., Hellack, B., Wohlleben, W., Laloy, J., Stan, M.S., Dinischiotu, A., Wiemann, M., Luch, A., Haase, A., von Bergen, M., Schubert, K. (2021):
  Omics reveal different oxidative stress levels induced by nanomaterials in vitro and in vivo
  Toxicol. Lett. 350 (Suppl.), S125
  full text (doi)
• Kasmanas, J.C., Bartholomäus, A., Borim Corrêa, F., Tal, T., Jehmlich, N., Herberth, G., von Bergen, M., Stadler, P.F., de Carvalho, A.C.P.L.F., Nunes da Rocha, U. (2021):
  HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes
  Nucleic Acids Res. 49 (D1), D743 - D750
  full text (doi)
• Kruse, S., Türkowsky, D., Birkigt, J., Matturro, B., Franke, S., Jehmlich, N., von Bergen, M., Westermann, M., Rossetti, S., Nijenhuis, I., Adrian, L., Diekert, G., Goris, T. (2021):
  Interspecies metabolite transfer and aggregate formation in a co-culture of Dehalococcoides and Sulfurospirillum dehalogenating tetrachloroethene to ethene
  ISME J. 15 (6), 1794 - 1809
  full text (doi)
• Le Duc, D., Lin, C.-C., Popkova, Y., Yang, Z., Akhil, V., Çakir, M.V., Grunewald, S., Simon, J.-C., Dietz, A., Dannenberger, D., Garten, A., Lemke, J.R., Schiller, J., Blüher, M., Nono Nankam, P.A., Rolle-Kampczyk, U., von Bergen, M., Kelso, J., Schöneberg, T. (2021):
  Reduced lipolysis in lipoma phenocopies lipid accumulation in obesity
  Int. J. Obes. 45 (3), 565 - 576
  full text (doi)
• Li, Q., Cooper, R.E., Wegner, C.-E., Taubert, M., Jehmlich, N., von Bergen, M., Küsel, K. (2021):
  Insights into autotrophic activities and carbon flow in iron-rRich pelagic aggregates (iron snow)
  Microorganisms 9 (7), art. 1368
  full text (doi)
• Medawar, E., Haange, S.-B., Rolle-Kampczyk, U., Engelmann, B., Dietrich, A., Thieleking, R., Wiegank, C., Fries, C., Horstmann, A., Villringer, A., von Bergen, M., Fenske, W., Witte, A.V. (2021):
  Gut microbiota link dietary fiber intake and short-chain fatty acid metabolism with eating behavior
  Transl. Psychiatr. 11 , art. 500
  full text (doi)
• Monikh, F.A., Chupani, L., Karkossa, I., Gardian, Z., Arenas-Logo, D., von Bergen, M., Schubert, K., Piackova, V., Zuskova, E., Jiskoot, W., Vijver, M.G., Peijnenburg, W.J.G.M. (2021):
  An environmental ecocorona influences the formation and evolution of the biological corona on the surface of single-walled carbon nanotubes
  NanoImpact 22 , art. 100315
  full text (doi)
• Nickel, S., Vlaic, S., Christ, M., Schubert, K., Henschler, R., Tautenhahn, F., Burger, C., Kühne, H., Erler, S., Roth, A., Wild, C., Brach, J., Hammad, S., Gittel, C., Baunack, M., Lange, U., Broschewitz, J., Stock, P., Metelmann, I., Bartels, M., Pietsch, U.-C., Krämer, S., Eichfeld, U., von Bergen, M., Dooley, S., Tautenhahn, H.-M., Christ, B. (2021):
  Mesenchymal stromal cells mitigate liver damage after extended resection in the pig by modulating thrombospondin-1/TGF-β
  npj Regen. Med. 6 , art. 84
  full text (doi)
• Petruschke, H., Schori, C., Canzler, S., Riesbeck, S., Poehlein, A., Daniel, R., Frei, D., Segessemann, T., Zimmerman, J., Marinos, G., Kaleta, C., Jehmlich, N., Ahrens, C.H., von Bergen, M. (2021):
  Discovery of novel community-relevant small proteins in a simplified human intestinal microbiome
  Microbiome 9 , art. 55
  full text (doi)
• Sallam, I.E., Abdelwareth, A., Attia, H., Aziz, R.K., Homsi, M.N., von Bergen, M., Farag, M.A. (2021):
  Effect of gut microbiota biotransformation on dietary tannins and human health implications
  Microorganisms 9 (5), art. 965
  full text (doi)
• Schaffert, A., Arnold, J., Karkossa, I., Blüher, M., von Bergen, M., Schubert, K. (2021):
  The emerging plasticizer alternative DINCH and its metabolite MINCH induce oxidative stress and enhance inflammatory responses in human THP-1 macrophages
  Cells 10 (9), art. 2367
  full text (doi)
• Schaffert, A., Krieg, L., Weiner, J., Schlichting, R., Ueberham, E., Karkossa, I., Bauer, M., Landgraf, K., Junge, K.M., Wabitsch, M., Lehmann, J., Escher, B.I., Zenclussen, A.C., Körner, A., Blüher, M., Heiker, J.T., von Bergen, M., Schubert, K. (2021):
  Alternatives for the worse: Molecular insights into adverse effects of bisphenol a and substitutes during human adipocyte differentiation
  Environ. Int. 156 , art. 106730
  full text (doi)
• Schaffert, A., Krieg, L., Weinert, J., Schlichting, R., Ueberham, E., Karkossa, I., Bauer, M., Junge, K., Wabitsch, M., Lehmann, J., Escher, B.I., Zenclussen, A.C., Körner, A., Blüher, M., Heiker, J.T., von Bergen, M., Schubert, K. (2021):
  Emerging substitutes of BPA cause inflammation-like state and impaired insulin sensitivity in differentiating human adipocytes
  Toxicol. Lett. 350 (Suppl.), S130
  full text (doi)
• Schubert, K., Karkossa, I., Schor, J., Engelmann, B., Steinheuer, L.M., Bruns, T., Rolle-Kampczyk, U., Hackermüller, J., von Bergen, M. (2021):
  A multi-omics analysis of mucosal-associated-invariant T cells reveals key drivers of distinct modes of activation
  Front. Immunol. 12 , art. 616967
  full text (doi)
• Shahid, N., Rolle-Kampczyk, U., Siddique, A., von Bergen, M., Liess, M. (2021):
  Pesticide-induced metabolic changes are amplified by food stress
  Sci. Total Environ. 792 , art. 148350
  full text (doi)
• Smith, L., Martin, C., Lasserre, F., Engelmann, B., Klément, W., Fougerat, A., Polizzi, A., Canlet, C., Rolle-Kampczyk, U., von Bergen, M., Lippi, Y., Guillou, H., Loiseau, N., Payastre, L., Ellero-Simatos, S. (2021):
  Impact d’une exposition alimentaire chronique au glyphosate à des doses de référence sur le microbiote intestinal et le métabolisme énergétique chez la souris
  Nutr. Clin. Metab. 35 (1), 74 - 74
  full text (doi)
• Starke, R., Schäpe, S.S., Jehmlich, N., von Bergen, M. (2021):
  Protein stable isotope probing with H₂¹⁸O differentiated cold stress response at permissive temperatures from general growth at optimal conditions in Escherichia coli K12
  Rapid Commun. Mass Spectrom. 35 (1), e8941
  full text (doi)
• Streidl, T., Karkossa, I., Segura Muñoz, R.R., Eberl, C., Zaufel, A., Plagge, J., Schmaltz, R., Schubert, K., Basic, M., Schneider, K.M., Afify, M., Trautwein, C., Tolba, R., Stecher, B., Doden, H.L., Ridlon, J.M., Ecker, J., Moustafa, T., von Bergen, M., Ramer-Tait, A.E., Clavel, T. (2021):
  The gut bacterium Extibacter muris produces secondary bile acids and influences liver physiology in gnotobiotic mice
  Gut Microbes 13 (1), 1 - 21
  full text (doi)
• Thürmann, L., Herberth, G., Seiwert, B., Schlittenbauer, L., Rolle-Kampczyk, U., Röder, S., Sack, U., Borte, M., von Bergen, M., Trump, S., Reemtsma, T., Lehmann, I. (2021):
  Prenatal paraben exposure and atopic dermatitis-related outcomes among children
  Allergy 76 (10), 3122 - 3132
  full text (doi)
• Tsaban, G., Meir, A.Y., Rinott, E., Zelicha, H., Kaplan, A., Shalev, A., Katz, A., Rudich, A., Tirosh, A., Shelef, I., Youngster, I., Lebovitz, S., Israeli, N., Shabat, M., Brikner, D., Pupkin, E., Stumvoll, M., Thiery, J., Ceglarek, U., Heiker, J.T., Körner, A., Landgraf, K., von Bergen, M., Blüher, M., Stampfer, M.J., Shai, I. (2021):
  The effect of green Mediterranean diet on cardiometabolic risk; a randomised controlled trial
  Heart 107 (13), 1054 - 1061
  full text (doi)
• Van Den Bossche, T., Kunath, B.J., Schallert, K., Schäpe, S.S., Abraham, P.E., Armengaud, J., Arntzen, M.Ø., Bassignani, A., Benndorf, D., Fuchs, S., Giannone, R.J., Griffin, T.J., Hagen, L.H., Halder, R., Henry, C., Hettich, R.L., Heyer, R., Jagtap, P., Jehmlich, N., Jensen, M., Juste, C., Kleiner, M., Langella, O., Lehmann, T., Leith, E., May, P., Mesuere, B., Miotello, G., Peters, S.L., Pible, O., Queiros, P.T., Reichl, U., Renard, B.Y., Schiebenhoefer, H., Sczyrba, A., Tanca, A., Trappe, K., Trezzi, J.-P., Uzzau, S., Verschaffelt, P., von Bergen, M., Wilmes, P., Wolf, M., Martens, L., Muth, T. (2021):
  Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows
  Nat. Commun. 12 , art. 7305
  full text (doi)
• Venkat, K., Hoyos, M., Haycocks, J.R.J., Cassidy, L., Engelmann, B., Rolle-Kampczyk, U., von Bergen, M., Tholey, A., Grainger, D.C., Papenfort, K. (2021):
  A dual-function RNA balances carbon uptake and central metabolism in Vibrio cholerae
  Embo J. 40 (24), e108542
  full text (doi)
• Walter, K., Grosskopf, H., Karkossa, I., von Bergen, M., Schubert, K. (2021):
  Proteomic characterization of the cellular effects of AhR activation by microbial tryptophan catabolites in endotoxin-activated human macrophages
  Int. J. Environ. Res. Public Health 18 (19), 10336
  full text (doi)
• Wang, Z., Karkossa, I., Großkopf, H., Canzler, S., Rolle-Kampczyk, U., Hackermüller, J., von Bergen, M., Schubert, K. (2021):
  Quantitative proteomics reveal mechanistic insights into direct and indirect drug-induced thyroid toxicity in rats
  Toxicol. Lett. 350 (Suppl.), S129
  full text (doi)
• Warmt, E., Grosser, S., Blauth, E., Xie, X., Kubitschke, H., Stange, R., Sauer, F., Schnauß, J., Tomm, J.M., von Bergen, M., Käs, J.A. (2021):
  Differences in cortical contractile properties between healthy epithelial and cancerous mesenchymal breast cells
  New J. Phys. 23 (10), art. 103020
  full text (doi)
• Yaskolka Meir, A., Tuohy, K., von Bergen, M., Krajmalnik-Brown, R., Heinig, U., Zelicha, H., Tsaban, G., Rinott, E., Kaplan, A., Aharoni, A., Zeibich, L., Chang, D., Dirks, B., Diotallevi, C., Arapitsas, P., Vrhovsek, U., Ceglarek, U., Haange, S.-B., Rolle-Kampczyk, U., Engelmann, B., Lapidot, M., Colt, M., Sun, Q., Shai, I. (2021):
  The metabolomic-gut-clinical axis of Mankai plant-derived dietary polyphenols
  Nutrients 13 (6), art. 1866
  full text (doi)

2020 (31)

• Bannuscher, A., Karkossa, I., Buhs, S., Nollau, P., Kettler, K., Balas, M., Dinischiotu, A., Hellack, B., Wiemann, M., Luch, A., von Bergen, M., Haase, A., Schubert, K. (2020):
  A multi-omics approach reveals mechanisms of nanomaterial toxicity and structure–activity relationships in alveolar macrophages
  Nanotoxicology 14 (2), 181 - 195
  full text (doi)
• Canzler, S., Schor, J., Busch, W., Schubert, K., Rolle-Kampczyk, U.E., Seitz, H., Kamp, H., von Bergen, M., Buesen, R., Hackermüller, J. (2020):
  Prospects and challenges of multi‑omics data integration in toxicology
  Arch. Toxicol. 94 (2), 371 - 388
  full text (doi)
• Dey, P., Malik, A., Mishra, A., Singh, D.K., von Bergen, M., Jehmlich, N. (2020):
  Mechanistic insight to mycoremediation potential of a metal resistant fungal strain for removal of hazardous metals from multimetal pesticide matrix
  Environ. Pollut. 262 , art. 114255
  full text (doi)
• Farag, M.A., Abdelwareth, A., Sallam, I.E., el Shorbagi, M., Jehmlich, N., Fritz, K., Schaepe, S., Rolle-Kampczyk, U., Ehrlich, A., Wessjohann, L.A., von Bergen, M. (2020):
  Metabolomics reveals impact of seven functional foods on metabolic pathways in a gut microbiota model
  J. Adv. Res. 23 , 47 - 59
  full text (doi)
• Fritz-Wallace, K., Engelmann, B., Krause, J.L., Schäpe, S.S., Pöppe, J., Herberth, G., Rösler, U., Jehmlich, N., von Bergen, M., Rolle-Kampczyk, U. (2020):
  Quantification of glyphosate and AMPA from microbiome reactor fluids
  Rapid Commun. Mass Spectrom. 34 (7), e8668
  full text (doi)
• Haange, S.-B., Groeger, N., Froment, J., Rausch, T., Burkhardt, W., Gonnermann, S., Braune, A., Blaut, M., von Bergen, M., Rolle-Kampczyk, U. (2020):
  Multiplexed quantitative assessment of the fate of taurine and sulfoquinovose in the intestinal microbiome
  Metabolites 10 (11), art. 430
  full text (doi)
• Haange, S.-B., Jehmlich, N., Krügel, U., Hintschich, C., Wehrmann, D., Hankir, M., Seyfried, F., Froment, J., Hübschmann, T., Müller, S., Wissenbach, D.K., Kang, K.H., Buettner, C., Panagiotou, G., Noll, M., Rolle-Kampczyk, U., Fenske, W., von Bergen, M. (2020):
  Gastric bypass surgery in a rat model alters the community structure and functional composition of the intestinal microbiota independently of weight loss
  Microbiome 8 , art. 13
  full text (doi)
• Hsu, M.-J., Karkossa, I., Schäfer, I., Christ, M., Kühne, H., Schubert, K., Rolle-Kampczyk, U.E., Kalkhof, S., Nickel, S., Seibel, P., von Bergen, M., Christ, B. (2020):
  Mitochondrial transfer by human mesenchymal stromal cells ameliorates hepatocyte lipid load in a mouse model of NASH
  Biomedicines 8 (9), art. 350
  full text (doi)
• Jacoby, C., Krull, J., Andexer, J., Jehmlich, N., von Bergen, M., Brüls, T., Boll, M. (2020):
  Channeling C1 metabolism toward S-adenosylmethionine-dependent conversion of estrogens to androgens in estrogen-degrading bacteria
  mBio 11 (4), e01259-20
  full text (doi)
• Kalkhof, S., Krieg, L., Büttner, P., Wabitsch, M., Küntzel, C., Friebe, D., Landgraf, K., Hanschkow, M., Schubert, K., Kiess, W., Krohn, K., Blüher, M., von Bergen, M., Körner, A. (2020):
  In depth quantitative proteomic and transcriptomic characterization of human adipocyte differentiation using the SGBS cell line
  Proteomics 20 (15-16), art. 1900405
  full text (doi)
• Karkossa, I., Raps, S., von Bergen, M., Schubert, K. (2020):
  Systematic review of multi-omics approaches to investigate toxicological effects in macrophages
  Int. J. Mol. Sci. 21 (24), art. 9371
  full text (doi)
• Krause, J.L., Haange, S.-B., Schäpe, S.S., Engelmann, B., Rolle-Kampczyk, U., Fritz-Wallace, K., Wang, Z., Jehmlich, N., Türkowsky, D., Schubert, K., Pöppe, J., Bote, K., Rösler, U., Herberth, G., von Bergen, M. (2020):
  The glyphosate formulation Roundup^® LB plus influences the global metabolome of pig gut microbiota in vitro
  Sci. Total Environ. 745 , art. 140932
  full text (doi)
• Krause, J.L., Schaepe, S.S., Fritz-Wallace, K., Engelmann, B., Rolle-Kampczyk, U., Kleinsteuber, S., Schattenberg, F., Liu, Z., Müller, S., Jehmlich, N., von Bergen, M., Herberth, G. (2020):
  Following the community development of SIHUMIx – a new intestinal in vitro model for bioreactor use
  Gut Microbes 11 (4), 1116 - 1129
  full text (doi)
• Krause, J.L., Schäpe, S.S., Schattenberg, F., Müller, S., Ackermann, G., Rolle-Kampczyk, U.E., Jehmlich, N., Pierzchalski, A., von Bergen, M., Herberth, G. (2020):
  The activation of mucosal-associated invariant T (MAIT) cells is affected by microbial diversity and riboflavin utilization in vitro
  Front. Microbiol. 11 , art. 755
  full text (doi)
• Krieg, L., Schaffert, A., Kern, M., Landgraf, K., Wabitsch, M., Beck-Sickinger, A.G., Koerner, A., Blüher, M., von Bergen, M., Schubert, K. (2020):
  An MRM-based multiplexed quantification assay for human adipokines and apolipoproteins
  Molecules 25 (4), art. 775
  full text (doi)
• Leppert, B., Strunz, S., Seiwert, B., Schlittenbauer, L., Schlichting, R., Pfeifer, C., Röder, S., Bauer, M., Borte, M., Stangl, G.I., Schöneberg, T., Schulz, A., Karkossa, I., Rolle-Kampczyk, U.E., Thürmann, L., von Bergen, M., Escher, B.I., Junge, K.M., Reemtsma, T., Lehmann, I., Polte, T. (2020):
  Maternal paraben exposure triggers childhood overweight development
  Nat. Commun. 11 , art. 561
  full text (doi)
• Lohmann, P., Benk, S., Gleixner, G., Potthast, K., Michalzik, B., Jehmlich, N., von Bergen, M. (2020):
  Seasonal patterns of dominant microbes involved in central nutrient cycles in the subsurface
  Microorganisms 8 (11), art. 1694
  full text (doi)
• Lohmann, P., Schäpe, S.S., Haange, S.-B., Oliphant, K., Allen-Vercoe, E., Jehmlich, N., von Bergen, M. (2020):
  Function is what counts: how microbial community complexity affects species, proteome and pathway coverage in metaproteomics
  Expert Rev. Proteomics 17 (2), 163 - 173
  full text (doi)
• Mahdi, D.H., Wissenbach, D.K., von Bergen, M., Vissiennon, Z., Chougourou, D., Nieber, K., Ahyi, V., Vissiennon, C. (2020):
  Ethnomedicinal survey and in vitro confirmation of anti-inflammatory and antispasmodic properties of the termite strain Macrotermes bellicosus used in traditional medicine in the Republic of Benin
  J. Ethnopharmacol. 254 , art. 112705
  full text (doi)
• Massier, L., Chakaroun, R., Tabei, S., Crane, A., Didt, K.D., Fallmann, J., von Bergen, M., Haange, S.-B., Heyne, H., Stumvoll, M., Gericke, M., Dietrich, A., Blüher, M., Musat, N., Kovacs, P. (2020):
  Adipose tissue derived bacteria are associated with inflammation in obesity and type 2 diabetes
  Gut 69 (10), 1796 - 1806
  full text (doi)
• Mendler, A., Geier, F., Haange, S.-B., Pierzchalski, A., Krause, J.L., Nijenhuis, I., Froment, J., Jehmlich, N., Berger, U., Ackermann, G., Rolle-Kampczyk, U., von Bergen, M., Herberth, G. (2020):
  Mucosal-associated invariant T-Cell (MAIT) activation is altered by chlorpyrifos- and glyphosate-treated commensal gut bacteria
  J. Immunotoxicol. 17 (1), 10 - 20
  full text (doi)
• Mendler, A., Pierzchalski, A., Bauer, M., Röder, S., Sattler, A., Standl, M., Borte, M., von Bergen, M., Rolle-Kampczyk, U., Herberth, G. (2020):
  MAIT cell activation in adolescents is impacted by bile acid concentrations and body weight
  Clin. Exp. Immunol. 200 (2), 199 - 213
  full text (doi)
• Meyer-Cifuentes, I., Gruhl, S., Haange, S.-B., Lünsmann, V., Jehmlich, N., von Bergen, M., Heipieper, H.J., Müller, J.A. (2020):
  Benzylsuccinate synthase is post-transcriptionally regulated in the toluene-degrading denitrifier Magnetospirillum sp. strain 15-1
  Microorganisms 8 (5), art. 681
  full text (doi)
• Pereira, F.C., Wasmund, K., Cobankovic, I., Jehmlich, N., Herbold, C.W., Lee, K.S., Sziranyi, B., Vesely, C., Decker, T., Stocker, R., Warth, B., von Bergen, M., Wagner, M., Berry, D. (2020):
  Rational design of a microbial consortium of mucosal sugar utilizers reduces Clostridiodes difficile colonization
  Nat. Commun. 11 , art. 5104
  full text (doi)
• Petruschke, H., Anders, J., Stadler, P.F., Jehmlich, N., von Bergen, M. (2020):
  Enrichment and identification of small proteins in a simplified human gut microbiome
  J. Proteomics 213 , art. 103604
  full text (doi)
• Riba, A., Hassani, K., Walker, A., van Best, N., von Zeschwitz, D., Anslinger, T., Sillner, N., Rosenhain, S., Eibach, D., Maiga-Ascofaré, O., Rolle-Kampczyk, U., Basic, M., Binz, A., Mocek, S., Sodeik, B., Bauerfeind, R., Mohs, A., Trautwein, C., Kiessling, F., May, J., Klingenspor, M., Gremse, F., Schmitt-Kopplin, P., Bleich, A., Torow, N., von Bergen, M., Hornef, M.W. (2020):
  Disturbed gut microbiota and bile homeostasis in Giardia-infected mice contributes to metabolic dysregulation and growth impairment
  Sci. Transl. Med. 12 (565), eaay7019
  full text (doi)
• Rolle-Kampczyk, U., Gebauer, S., Haange, S.-B., Schubert, K., Kern, M., Moulla, Y., Dietrich, A., Schön, M.R., Klöting, N., von Bergen, M., Blüher, M. (2020):
  Accumulation of distinct persistent organic pollutants is associated with adipose tissue inflammation
  Sci. Total Environ. 748 , art. 142458
  full text (doi)
• Schäpe, S.S., Krause, J.L., Masanetz, R.K., Riesbeck, S., Starke, R., Rolle-Kampczyk, U., Eberlein, C., Heipieper, H.J., Herberth, G., von Bergen, M., Jehmlich, N. (2020):
  Environmentally relevant concentration of bisphenol S shows slight effects on SIHUMIx
  Microorganisms 8 (9), art. 1436
  full text (doi)
• Starke, R., Oliphant, K., Jehmlich, N., Schäpe, S.S., Sachsenberg, T., Kohlbacher, O., Allen-Vercoe, E., von Bergen, M. (2020):
  Tracing incorporation of heavy water into proteins for species-specific metabolic activity in complex communities
  J. Proteomics 222 , art. 103791
  full text (doi)
• van Best, N., Rolle-Kampczyk, U., Schaap, F.G., Basic, M., Olde Damink, S.W.M., Bleich, A., Savelkoul, P.H.M., von Bergen, M., Penders, J., Hornef, M.W. (2020):
  Bile acids drive the newborn’s gut microbiota maturation
  Nat. Commun. 11 , art. 3692
  full text (doi)
• Wang, Z., Karkossa, I., Großkopf, H., Rolle-Kampczyk, U., Hackermüller, J., von Bergen, M., Schubert, K. (2020):
  Comparison of quantitation methods in proteomics to define relevant toxicological information on AhR activation of HepG2 cells by BaP
  Toxicology 448 , art. 152652
  full text (doi)

2019 (25)

• Anselmann, S.E.L., Löffler, C., Stärk, H.-J., Jehmlich, N., von Bergen, M., Brüls, T., Boll, M. (2019):
  The class II benzoyl‐coenzyme A reductase complex from the sulfate‐reducing Desulfosarcina cetonica
  Environ. Microbiol. 21 (11), 4241 - 4252
  full text (doi)
• Buettner, C., von Bergen, M., Jehmlich, N., Noll, M. (2019):
  Pseudomonas spp. are key players in agricultural biogas substrate degradation
  Sci. Rep. 9 , 12871
  full text (doi)
• Engel, K.M., Baumann, S., Rolle-Kampczyk, U., Schiller, J., von Bergen, M., Grunewald, S. (2019):
  Metabolomic profiling reveals correlations between spermiogram parameters and the metabolites present in human spermatozoa and seminal plasma
  PLOS One 14 (2), e0211679
  full text (doi)
• Geiger, R.A., Junghare, M., Mergelsberg, M., Ebenau‐Jehle, C., Jesenofsky, V.J., Jehmlich, N., von Bergen, M., Schink, B., Boll, M. (2019):
  Enzymes involved in phthalate degradation in sulphate‐reducing bacteria
  Environ. Microbiol. 21 (10), 3601 - 3612
  full text (doi)
• Großkopf, H., Schubert, K., von Bergen, M. (2019):
  AhR-dependent non-genomic signaling in macrophages - A multi-PTM-omics and proteomics study
  Eur. J. Immunol. 49 (Suppl. 1), 137
  full text (doi)
• Haange, S.-B., Jehmlich, N., Hoffmann, M., Weber, K., Lehmann, J., von Bergen, M., Slanina, J. (2019):
  Disease development is accompanied by changes in bacterial protein abundance and functions in a refined model of dextran sulfate sodium (DSS)-induced colitis
  J. Proteome Res. 18 (4), 1774 - 1786
  full text (doi)
• Haange, S.-B., Jehmlich, N., Jacobi, T., von Bergen, M. (2019):
  Chancen und Risiken von Metaproteomik in der Mikrobiomforschung. Opportunities and pitfalls of metaproteomics in microbiome research
  Adipositas - Ursachen, Folgeerkrankungen, Therapie 13 (4), 205 - 213
  full text (doi)
• Huwiler, S.G., Löffler, C., Anselmann, S.E.L., Stärk, H.-J., von Bergen, M., Flechsler, J., Rachel, R., Boll, M. (2019):
  One-megadalton metalloenzyme complex in Geobacter metallireducens involved in benzene ring reduction beyond the biological redox window
  Proc. Natl. Acad. Sci. U.S.A. 116 (6), 2259 - 2264
  full text (doi)
• Karkossa, I., Bannuscher, A., Hellack, B., Bahl, A., Buhs, S., Nollau, P., Luch, A., Schubert, K., von Bergen, M., Haase, A. (2019):
  An in-depth multi-omics analysis in RLE-6TN rat alveolar epithelial cells allows for nanomaterial categorization
  Part. Fibre Toxicol. 16 (1), art. 38
  full text (doi)
• Ke, X., Walker, A., Haange, S.-B., Lagkouvardos, I., Liu, Y., Schmitt-Kopplin, P., von Bergen, M., Jehmlich, N., He, X., Clavel, T., Cheung, P.C.K. (2019):
  Synbiotic-driven improvement of metabolic disturbances is associated with changes in the gut microbiome in diet-induced obese mice
  Mol. Metab. 22 , 96 - 109
  full text (doi)
• Kratochvil, I., Bannuscher, A., Hellack, B., von Bergen, M., Haase, A., Schubert, K. (2019):
  Nanomaterials affect oxidative phosphorylation and phagocytosis in alveolar macrophages
  Eur. J. Immunol. 49 (Suppl. 1), 232
  full text (doi)
• Kratochvil, I., Hofmann, T., Rother, S., Schlichting, R., Moretti, R., Scharnweber, D., Hintze, V., Escher, B.I., Meiler, J., Kalkhof, S., von Bergen, M. (2019):
  Mono(2‐ethylhexyl) phthalate (MEHP) and mono(2‐ethyl‐5‐oxohexyl) phthalate (MEOHP) but not di(2‐ethylhexyl) phthalate (DEHP) bind productively to the peroxisome proliferator‐activated receptor γ
  Rapid Commun. Mass Spectrom. 33 (S1), 75 - 85
  full text (doi)
• Küster, E., Kalkhof, S., Aulhorn, S., von Bergen, M., Gündel, U. (2019):
  Effects of five substances with different modes of action on cathepsin H, C and L activities in zebrafish embryos
  Int. J. Environ. Res. Public Health 16 (20), art. 3956
  full text (doi)
• Mandić, A.D., Woting, A., Jaenicke, T., Sander, A., Sabrowski, W., Rolle-Kampczyk, U., von Bergen, M., Blaut, M. (2019):
  Clostridium ramosum regulates enterochromaffin cell development and serotonin release
  Sci. Rep. 9 , art. 1177
  full text (doi)
• Mueller, A., Ulrich, N., Hollmann, J., Zapata Sanchez, C.E., Rolle-Kampczyk, U.E., von Bergen, M. (2019):
  Characterization of a multianalyte GC-MS/MS procedure for detecting and quantifying polycyclic aromatic hydrocarbons (PAHs) and PAH derivatives from air particulate matter for an improved risk assessment
  Environ. Pollut. 255 (Part 2), art. 112967
  full text (doi)
• Ordiz, M.I., Semba, R.D., Moaddel, R., Rolle-Kampczyk, U., von Bergen, M., Herberth, G., Khadeer, M., Röder, S., Manary, M.J. (2019):
  Serum amino acid concentrations in infants from Malawi are associated with linear growth
  Curr. Dev. Nutr. 3 (10), nzz100
  full text (doi)
• Schäpe, S.S., Krause, J.L., Engelmann, B., Fritz-Wallace, K., Schattenberg, F., Liu, Z., Müller, S., Jehmlich, N., Rolle-Kampczyk, U., Herberth, G., von Bergen, M. (2019):
  The simplified human intestinal microbiota (SIHUMIx) shows high structural and functional resistance against changing transit times in in vitro bioreactors
  Microorganisms 7 (12), art. 641
  full text (doi)
• Schmidt, J.R., Geurtzen, K., von Bergen, M., Schubert, K., Knopf, F. (2019):
  Glucocorticoid treatment leads to aberrant ion and macromolecular transport in regenerating zebrafish fins
  Front. Endocrinol. 10 , art. 674
  full text (doi)
• Schmidt, J.R., Vogel, S., Moeller, S., Kalkhof, S., Schubert, K., von Bergen, M., Hempel, U. (2019):
  Sulfated hyaluronic acid and dexamethasone possess a synergistic potential in the differentiation of osteoblasts from human bone marrow stromal cells
  J. Cell. Biochem. 120 (5), 8706 - 8722
  full text (doi)
• Schubert, K., Schor, J., Kratochvil, I., Hackermüller, J., von Bergen, M. (2019):
  Multi-omics profiling of MAIT cells reveals specific patterns of antigen-dependent and -independent activation
  Eur. J. Immunol. 49 (Suppl. 1), 141
  full text (doi)
• Taubert, M., Grob, C., Crombie, A., Howat, A.M., Burns, O.J., Weber, M., Lott, C., Kaster, A.-K., Vollmers, J., Jehmlich, N., von Bergen, M., Chen, Y., Murrell, J.C. (2019):
  Communal metabolism by Methylococcaceae and Methylophilaceae is driving rapid aerobic methane oxidation in sediments of a shallow seep near Elba, Italy
  Environ. Microbiol. 21 (10), 3780 - 3795
  full text (doi)
• Thürmann, L., Herberth, G., Rolle-Kampczyk, U., Röder, S., Borte, M., von Bergen, M., Lehmann, I., Trump, S. (2019):
  Elevated gestational IL-13 during fetal development is associated with hyperactivity and inattention in eight-year-old children
  Front. Immunol. 10 , art. 1658
  full text (doi)
• Türkowsky, D., Lohmann, P., Mühlenbrink, M., Schubert, T., Adrian, L., Goris, T., Jehmlich, N., von Bergen, M. (2019):
  Thermal proteome profiling allows quantitative assessment of interactions between tetrachloroethene reductive dehalogenase and trichloroethene
  J. Proteomics 192 , 10 - 17
  full text (doi)
• Tveit, A.T., Hestnes, A.G., Robinson, S.L., Schintlmeister, A., Dedysh, S.N., Jehmlich, N., von Bergen, M., Herbold, C., Wagner, M., Richter, A., Svenning, M.M. (2019):
  Widespread soil bacterium that oxidizes atmospheric methane
  Proc. Natl. Acad. Sci. U.S.A. 116 (17), 8515 - 8524
  full text (doi)
• Wieczorek, A.S., Schmidt, O., Chatzinotas, A., von Bergen, M., Gorissen, A., Kolb, S. (2019):
  Ecological functions of agricultural soil bacteria and microeukaryotes in chitin degradation: A case study
  Front. Microbiol. 10 , art. 1293
  full text (doi)

2018 (21)

• Bulitta, B., Zuschratter, W., Bernal, I., Bruder, D., Klawonn, F., von Bergen, M., Garritsen, H.S.P., Jänsch, L. (2018):
  Proteomic definition of human mucosal‐associated invariant T cells determines their unique molecular effector phenotype
  Eur. J. Immunol. 48 (8), 1336 - 1349
  full text (doi)
• Campoy, C., Cerdó, T., Ruiz, A., Jauregui, R., von Bergen, M., Suarez, A. (2018):
  Maternal pre-pregnancy body mass index imprints a gut microbial community composition with a specific functionality
  Ann. Nutr. Metab. 73 (Suppl. 2), 55
  full text (doi)
• Cerdó, T., Ruiz, A., Acuña, I., Jáuregui, R., Jehmlich, N., Haange, S.-B., von Bergen, M., Suárez, A., Campoy, C. (2018):
  Gut microbial functional maturation and succession during human early life
  Environ. Microbiol. 20 (6), 2160 - 2177
  full text (doi)
• Chupani, L., Niksirat, H., Lünsmann, V., Haange, S.-B., von Bergen, M., Jehmlich, N., Zuskova, E. (2018):
  Insight into the modulation of intestinal proteome of juvenile common carp (Cyprinus carpio L.) after dietary exposure to ZnO nanoparticles
  Sci. Total Environ. 613-614 , 62 - 71
  full text (doi)
• Firacative, C., Gressler, A.E., Schubert, K., Schulze, B., Müller, U., Brombacher, F., von Bergen, M., Alber, G. (2018):
  Identification of T helper (Th)1- and Th2-associated antigens of Cryptococcus neoformans in a murine model of pulmonary infection
  Sci. Rep. 8 , art. 2681
  full text (doi)
• Floegel, A., Kühn, T., Sookthai, D., Johnson, T., Prehn, C., Rolle-Kampczyk, U., Otto, W., Weikert, C., Illig, T., von Bergen, M., Adamski, J., Boeing, H., Kaaks, R., Pischon, T. (2018):
  Serum metabolites and risk of myocardial infarction and ischemic stroke: a targeted metabolomic approach in two German prospective cohorts
  Eur. J. Epidemiol. 33 (1), 55 - 66
  full text (doi)
• Herbst, F.-A., Jehmlich, N., von Bergen, M., Schmidt, F. (2018):
  Sulfur-³⁴S and ³⁶S stable isotope labeling of amino acids for quantification (SULAQ_34/36) of proteome analyses
  In: Becher, D. (ed.)
  Microbial proteomics : methods and protocols
  Methods in Molecular Biology 1841
  Springer Nature, p. 163 - 174
  full text (doi)
• Hintze, V., Rother, S., Köhler, L., Hempel, U., Anderegg, U., Pisabarro, M.T., Hofbauer, L., Schnabelrauch, M., Franz, S., von Bergen, M., Simon, J., Scharnweber, D. (2018):
  Glycosaminoglycan derivatives - functional nanostructures modulating healing processes in bone and skin
  FEBS Open Bio 8 (S1), 50 - 50
  full text (doi)
• Iqbal, K., Dietrich, S., Wittenbecher, C., Krumsiek, J., Kühn, T., Lacruz, M.E., Kluttig, A., Prehn, C., Adamski, J., von Bergen, M., Kaaks, R., Schulze, M.B., Boeing, H., Floegel, A. (2018):
  Comparison of metabolite networks from four German population-based studies
  Int. J. Epidemiol. 47 (6), 2070 - 2081
  full text (doi)
• Jahreis, S., Trump, S., Bauer, M., Bauer, T., Thürmann, L., Feltens, R., Wang, Q., Gu, L., Grützmann, K., Röder, S., Averbeck, M., Weichenhan, D., Plass, C., Sack, U., Borte, M., Dubourg, V., Schüürmann, G., Simon, J.C., von Bergen, M., Hackermüller, J., Eils, R., Lehmann, I., Polte, T. (2018):
  Maternal phthalate exposure promotes allergic airway inflammation over 2 generations through epigenetic modifications
  J. Allergy Clin. Immunol. 141 (2), 741 - 753
  full text (doi)
• Junge, K.M., Leppert, B., Jahreis, S., Wissenbach, D.K., Feltens, R., Grützmann, K., Thürmann, L., Bauer, T., Ishaque, N., Schick, M., Bewerunge-Hudler, M., Röder, S., Bauer, M., Schulz, A., Borte, M., Landgraf, K., Körner, A., Kiess, W., von Bergen, M., Stangl, G.I., Trump, S., Eils, R., Polte, T., Lehmann, I. (2018):
  MEST mediates the impact of prenatal bisphenol A exposure on long-term body weight development
  Clin. Epigenetics 10 , art. 58
  full text (doi)
• Korkmaz, A.G., Popov, I., Peisl, L., Codrea, M.C., Nahnsen, S., Steimle, A., Velic, A., Macek, B., von Bergen, M., Bernhardt, J., Frick, J.S. (2018):
  Proteome and phosphoproteome analysis of commensally induced dendritic cell maturation states
  J. Proteomics 180 , 11 - 24
  full text (doi)
• Lechner, U., Türkowsky, D., Dinh, T.T.H., Al-Fathi, H., Schwoch, S., Franke, S., Gerlach, M.-S., Koch, M., von Bergen, M., Jehmlich, N., Dang, T.C.H. (2018):
  Desulfitobacterium contributes to the microbial transformation of 2,4,5‐T by methanogenic enrichment cultures from a Vietnamese active landfill
  Microb. Biotechnol. 11 (6), 1137 - 1156
  full text (doi)
• Russo, R., Haange, S.-B., Rolle-Kampczyk, U., von Bergen, M., Becker, J.M., Liess, M. (2018):
  Identification of pesticide exposure-induced metabolic changes in mosquito larvae
  Sci. Total Environ. 643 , 1533 - 1541
  full text (doi)
• Schmidt, J.R., Rücker-Braun, E., Heidrich, K., von Bonin, M., Stölzel, F., Thiede, C., Middeke, J.M., Ehninger, G., Bornhäuser, M., Schetelig, J., Schubert, K., von Bergen, M., Heidenreich, F. (2018):
  Pilot study on mass spectrometry–based analysis of the proteome of CD34⁺CD123⁺ progenitor cells for the identification of potential targets for immunotherapy in acute myeloid leukemia
  Proteomes 6 (1), art. 11
  full text (doi)
• Taubert, M., Stöckel, S., Geesink, P., Girnus, S., Jehmlich, N., von Bergen, M., Rösch, P., Popp, J., Küsel, K. (2018):
  Tracking active groundwater microbes with D₂O labelling to understand their ecosystem function
  Environ. Microbiol. 20 (1), 369 - 384
  full text (doi)
• Thabet, A., Schmidt, J., Baumann, S., Honscha, W., von Bergen, M., Daugschies, A., Bangoura, B. (2018):
  Resistance towards monensin is proposed to be acquired in a Toxoplasma gondii model by reduced invasion and egress activities, in addition to increased intracellular replication
  Parasitology 145 (3), 313 - 325
  full text (doi)
• Thürmann, L., Grützmann, K., Klös, M., Bieg, M., Winter, M., Polte, T., Bauer, T., Schick, M., Bewerunge-Hudler, M., Röder, S., Bauer, M., Wissenbach, D.K., Sack, U., Weichenhan, D., Mücke, O., Plass, C., Borte, M., von Bergen, M., Lehmann, I., Eils, R., Trump, S. (2018):
  Early-onset childhood atopic dermatitis is related to NLRP2 repression
  J. Allergy Clin. Immunol. 141 (4), 1482 - 1485.e16
  full text (doi)
• Türkowsky, D., Esken, J., Goris, T., Schubert, T., Diekert, G., Jehmlich, N., von Bergen, M. (2018):
  A retentive memory of tetrachloroethene respiration in Sulfurospirillum halorespirans - involved proteins and a possible link to acetylation of a two-component regulatory system
  J. Proteomics 181 , 36 - 46
  full text (doi)
• Türkowsky, D., Jehmlich, N., Diekert, G., Adrian, L., von Bergen, M., Goris, T. (2018):
  An integrative overview of genomic, transcriptomic and proteomic analyses in organohalide respiration research
  FEMS Microbiol. Ecol. 94 (3), fiy013
  full text (doi)
• Zecchin, S., Mueller, R.C., Seifert, C., Stingl, U., Anantharaman, K., von Bergen, M., Cavalca, L., Pester, M. (2018):
  Rice paddy Nitrospirae carry and express genes related to sulfate respiration: Proposal of the new genus “Candidatus Sulfobium”
  Appl. Environ. Microb. 84 (5), e02224-17
  full text (doi)

2017 (22)

• Chupani, L., Zusková, É., Niksirat, H., Panáček, A., Lünsmann, V., Haange, S.-B., von Bergen, M., Jehmlich, N. (2017):
  Effects of chronic dietary exposure of zinc oxide nanoparticles on the serum protein profile of juvenile common carp (Cyprinus carpio L.)
  Sci. Total Environ. 579 , 1504 - 1511
  full text (doi)
• Ebenau-Jehle, C., Mergelsberg, M., Fischer, S., Brüls, T., Jehmlich, N., von Bergen, M., Boll, M. (2017):
  An unusual strategy for the anoxic biodegradation of phthalate
  ISME J. 11 (1), 224 - 236
  full text (doi)
• Englich, B., Herberth, G., Rolle-Kampczyk, U., Trump, S., Röder, S., Borte, M., Stangl, G.I., von Bergen, M., Lehmann, I., Junge, K.M. (2017):
  Maternal cytokine status may prime the metabolic profile and increase risk of obesity in children
  Int. J. Obes. 41 (9), 1440 - 1446
  full text (doi)
• Friedman, R.C., Kalkhof, S., Doppelt-Azeroual, O., Mueller, S.A., Chovancová, M., von Bergen, M., Schwikowski, B. (2017):
  Common and phylogenetically widespread coding for peptides by bacterial small RNAs
  BMC Genomics 18 , art. 553
  full text (doi)
• Hartwig, S., Dragomirova, N., Kublik, A., Türkowsky, D., von Bergen, M., Lechner, U., Adrian, L., Sawers, R.G. (2017):
  A H₂-oxidizing, 1,2,3-trichlorobenzene-reducing multienzyme complex isolated from the obligately organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1
  Environ. Microbiol. Rep. 9 (5), 618 - 625
  full text (doi)
• Herberth, G., Pierzchalski, A., Feltens, R., Bauer, M., Röder, S., Olek, S., Hinz, D., Borte, M., von Bergen, M., Lehmann, I. (2017):
  Prenatal phthalate exposure associates with low regulatory T-cell numbers and atopic dermatitis in early childhood: Results from the LINA mother-child study. Letter to the editor
  J. Allergy Clin. Immunol. 139 (4), 1376 - 1379.e8
  full text (doi)
• Hoffmann, M., Gebauer, S., Nüchter, M., Baber, R., Ried, J., von Bergen, M., Kiess, W. (2017):
  Endokrine Modulatoren. Hinweise aus epidemiologischen Studien bedürfen einer kritischen Überprüfung in Modellsystemen. Endocrine disruptors. Evidence from epidemiological studies necessitates a critical review of model systems
  Bundesgesundheitsblatt-Gesund. 60 (6), 640 - 648
  full text (doi)
• Jouy, F., Lohmann, N., Wandel, E., Ruiz-Gómez, G., Pisabarro, M.T., Beck-Sickinger, A.G., Schnabelrauch, M., Möller, S., Simon, J.C., Kalkhof, S., von Bergen, M., Franz, S. (2017):
  Sulfated hyaluronan attenuates inflammatory signaling pathways in macrophages involving induction of antioxidants
  Proteomics 17 (10), art. 1700082
  full text (doi)
• Kadisch, M., Julsing, M.K., Schrewe, M., Jehmlich, N., Scheer, B., von Bergen, M., Schmid, A., Bühler, B. (2017):
  Maximization of cell viability rather than biocatalyst activity improves whole-cell ω-oxyfunctionalization performance
  Biotechnol. Bioeng. 114 (4), 874 - 884
  full text (doi)
• Oberbach, A., Haange, S.-B., Schlichting, N., Heinrich, M., Lehmann, S., Till, H., Hugenholtz, F., Kullnick, Y., Smidt, H., Frank, K., Seifert, J., Jehmlich, N., von Bergen, M. (2017):
  Metabolic in vivo labeling highlights differences of metabolically active microbes from the mucosal gastrointestinal microbiome between high-fat and normal chow diet
  J. Proteome Res. 16 (4), 1593 - 1604
  full text (doi)
• Pinaud, L., Ferrari, M.L., Friedman, R., Jehmlich, N., von Bergen, M., Phalipon, A., Sansonetti, P.J., Campbell-Valois, F.-X. (2017):
  Identification of novel substrates of Shigella T3SA through analysis of its virulence plasmid-encoded secretome
  PLOS One 12 (10), e0186920
  full text (doi)
• Potratz, S., Tarnow, P., Jungnickel, H., Baumann, S., von Bergen, M., Tralau, T., Luch, A. (2017):
  Combination of metabolomics with cellular assays reveals new biomarkers and mechanistic insights on xenoestrogenic exposures in MCF-7 cells
  Chem. Res. Toxicol. 30 (4), 883 - 892
  full text (doi)
• Raulien, N., Friedrich, K., Strobel, S., Rubner, S., Baumann, S., von Bergen, M., Körner, A., Krueger, M., Rossol, M., Wagner, U. (2017):
  Fatty acid oxidation compensates for lipopolysaccharide-induced Warburg effect in glucose-deprived monocytes
  Front. Immunol. 8 , art. 609
  full text (doi)
• Schubert, K., Olde Damink, S.W.M., von Bergen, M., Schaap, F.G. (2017):
  Interactions between bile salts, gut microbiota, and hepatic innate immunity
  Immunol. Rev. 279 (1), 23 - 35
  full text (doi)
• Starke, R., Müller, M., Gaspar, M., Marz, M., Küsel, K., Totsche, K.U., von Bergen, M., Jehmlich, N. (2017):
  Candidate Brocadiales dominates C, N and S cycling in anoxic groundwater of a pristine limestone-fracture aquifer
  J. Proteomics 152 , 153 - 160
  full text (doi)
• Taubert, M., Grob, C., Howar, A.M., Burns, O.J., Pratscher, J., Jehmlich, N., von Bergen, M., Richnow, H.H., Chen, Y., Murrell, J.C. (2017):
  Methylamine as a nitrogen source for microorganisms from a coastal marine environment
  Environ. Microbiol. 19 (6), 2246 - 2257
  full text (doi)
• Tautenhahn, H.-M., Brückner, S., Uder, C., Erler, S., Hempel, M., von Bergen, M., Brach, J., Winkler, S., Pankow, F., Gittel, C., Baunack, M., Lange, U., Broschewitz, J., Dollinger, M., Bartels, M., Pietsch, U., Amann, K., Christ, B. (2017):
  Mesenchymal stem cells correct haemodynamic dysfunction associated with liver injury after extended resection in a pig model
  Sci. Rep. 7 , art. 2617
  full text (doi)
• Warnke, M., Jacoby, C., Jung, T., Agne, M., Mergelsberg, M., Starke, R., Jehmlich, N., von Bergen, M., Richnow, H.-H., Brüls, T., Boll, M. (2017):
  A patchwork pathway for oxygenase-independent degradation of side chain containing steroids
  Environ. Microbiol. 19 (11), 4684 - 4699
  full text (doi)
• Wewering, F., Jouy, F., Caliskan, S., Kalkhof, S., von Bergen, M., Luch, A., Zellmer, S. (2017):
  Hepatic co-cultures in vitro reveal suitable to detect Nrf2-mediated oxidative stress responses on the bladder carcinogen o-anisidine
  Toxicol. Vitro 40 , 153 - 160
  full text (doi)
• Wewering, F., Jouy, F., Wissenbach, D.K., Gebauer, S., Blüher, M., Gebhardt, R., Pirow, R., von Bergen, M., Kalkhof, S., Luch, A., Zellmer, K. (2017):
  Characterization of chemical-induced sterile inflammation in vitro: application of the model compound ketoconazole in a human hepatic co-culture system
  Arch. Toxicol. 91 (2), 799 - 810
  full text (doi)
• Winkler, S., Kalkhof, S., Brückner, S., Hempel, M., Baumann, S., von Bergen, M., Christ, B. (2017):
  Metabolic fingerprint of an immunodeficient NASH mouse model and impact after stem cell therapy
  J. Hepatol. 66 (1 (Suppl.)), S606 - S607
  full text (doi)
• Winter, M., Thürmann, L., Gu, Z., Schüürmann, G., Herberth, G., Hinz, D., von Bergen, M., Harms, H., Olek, S., Röder, S., Borte, M., Eils, R., Lehmann, I., Trump, S. (2017):
  The benzene metabolite 1,4-benzoquinone reduces regulatory T-cell function: A potential mechanism for tobacco smoke–associated atopic dermatitis
  J. Allergy Clin. Immunol. 140 (2), 603 - 605
  full text (doi)

2016 (43)

• Bastida, F., Jehmlich, N., Lima, K., Morris, B.E.L., Richnow, H.H., Hernández, T., von Bergen, M., García, C. (2016):
  The ecological and physiological responses of the microbial community from a semiarid soil to hydrocarbon contamination and its bioremediation using compost amendment
  J. Proteomics 135 , 162 - 169
  full text (doi)
• Dey, P., Gola, D., Mishra, A., Malik, A., Kumar, P., Singh, D.K., Patel, N., von Bergen, M., Jehmlich, N. (2016):
  Comparative performance evaluation of multi-metal resistant fungal strains for simultaneous removal of multiple hazardous metals
  J. Hazard. Mater. 318 , 679 - 685
  full text (doi)
• Dietrich, S., Floegel, A., Troll, M., Kühn, T., Rathmann, W., Peters, A., Sookthai, D., von Bergen, M., Kaaks, R., Adamski, J., Prehn, C., Boeing, H., Schulze, M.B., Illig, T., Pischon, T., Knüppel, S., Wang-Sattler, R., Drogan, D. (2016):
  Random Survival Forest in practice: a method for modelling complex metabolomics data in time to event analysis
  Int. J. Epidemiol. 45 (5), 1406 - 1420
  full text (doi)
• Els-Heindl, S., Kostelnik, K.B., Klöting, N., Baumann, S., von Bergen, M., Beck-Sickinger, A.G. (2016):
  A palmitoylated ghrelin receptor ligand shows high metabolic invivo stability and bioavailability
  Neuropeptides 55 , 1 - 12
  full text (doi)
• Förster, Y., Schmidt, J.R., Wissenbach, D.K., Pfeiffer, S.E.M., Baumann, S., Hofbauer, L.C., von Bergen, M., Kalkhof, S., Rammelt, S. (2016):
  Microdialysis sampling from wound fluids enables quantitative assessment of cytokines, proteins, and metabolites reveals bone defect-specific molecular profiles
  PLOS One 11 (7), e0159580
  full text (doi)
• Gjesing Welinder, K., Hansen, R., Toft Overgaard, M., Brohus, M., Sønderkær, M., von Bergen, M., Rolle-Kampczyk, U., Otto, W., Lindahl, T.L., Arinell, K., Evans, A.L., Swenson, J.E., Revsbech, I.G., Frøbert, O. (2016):
  Biochemical foundations of health and energy conservation in hibernating free-ranging subadult brown bear Ursus arctos
  J. Biol. Chem. 291 , 22509 - 22523
  full text (doi)
• Goris, T., Schiffmann, C.L., Gadkari, J., Adrian, L., von Bergen, M., Diekert, G., Jehmlich, N. (2016):
  Proteomic data set of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates
  Data Brief 8 , 637 - 642
  full text (doi)
• Herbst, F.-A., Lünsmann, V., Kjeldal, H., Jehmlich, N., Tholey, A., von Bergen, M., Nielsen, J.L., Hettich, R.L., Seifert, J., Nielsen, P.H. (2016):
  Enhancing metaproteomics—The value of models and defined environmental microbial systems
  Proteomics 16 (5), 783 - 798
  full text (doi)
• Hoeke, H., Roeder, S., Bertsche, T., Borte, M., von Bergen, M., Wissenbach, D.K. (2016):
  Assessment of maternal drug intake by urinary bio monitoring during pregnancy and postpartally until the third perinatal year
  Pharmacoepidemiol. Drug Saf. 25 (4), 431 - 437
  full text (doi)
• Hoeke, H., Roeder, S., Mueller, A., Bertsche, T., Borte, M., Rolle-Kampczyk, U., von Bergen, M., Wissenbach, D.K. (2016):
  Biomonitoring of prenatal analgesic intake and correlation with infantile anti-aeroallergens IgE
  Allergy 71 (6), 901 - 906
  full text (doi)
• Hörnig, F., Kohajda, T., Röder, S., Herberth, G., von Bergen, M., Borte, M., Diez, U., Rolle-Kampczyk, U., Simon, J.-C., Denburg, J.A., Lehmann, I., Junge, K.M. (2016):
  The LINA study: higher sensitivity of infant compared to maternal eosinophil/basophil progenitors to indoor chemical exposures
  J. Environ. Public Health 2016 , art. 5293932
  full text (doi)
• Huber, K., Dänicke, S., Rehage, J., Sauerwein, H., Otto, W., Rolle-Kampczyk, U., von Bergen, M. (2016):
  Metabotypes with properly functioning mitochondria and antiinflammation predict extended productive life span in dairy cows
  Sci. Rep. 6 , art. 24642
  full text (doi)
• Jehmlich, N., Vogt, C., Lünsmann, V., Richnow, H.H., von Bergen, M. (2016):
  Protein-SIP in environmental studies
  Curr. Opin. Biotechnol. 41 , 26 - 33
  full text (doi)
• Kalkhof, S., Schildbach, S., Blumert, C., Horn, F., von Bergen, M., Labudde, D. (2016):
  PIPINO: a software package to facilitate the identification of protein-protein interactions from affinity purification mass spectrometry data
  Biomed Res. Int. 2016 , art. 2891918
  full text (doi)
• Kenéz, Á., Dänicke, S., Rolle-Kampczyk, U., von Bergen, M., Huber, K. (2016):
  A metabolomics approach to characterize phenotypes of metabolic transition from late pregnancy to early lactation in dairy cows
  Metabolomics 12 (11), art. 165
  full text (doi)
• Kjeldal, H., Zhou, N.A., Wissenbach, D.K., von Bergen, M., Gough, H.L., Nielsen, J.L. (2016):
  Genomic, proteomic, and metabolite characterization of gemfibrozil-degrading organism Bacillus sp. GeD10
  Environ. Sci. Technol. 50 (2), 744 - 755
  full text (doi)
• Kublik, A., Deobald, D., Hartwig, S., Schiffmann, C.L., Andrades, A., von Bergen, M., Sawers, R.G., Adrian, L. (2016):
  Identification of a multi-protein reductive dehalogenase complex in Dehalococcoides mccartyi strain CBDB1 suggests a protein-dependent respiratory electron transport chain obviating quinone involvement
  Environ. Microbiol. 18 (9), 3044 - 3056
  full text (doi)
• Kühn, T., Floegel, A., Sookthai, D., Johnson, T., Rolle-Kampczyk, U., Otto, W., von Bergen, M., Boeing, H., Kaaks, R. (2016):
  Higher plasma levels of lysophosphatidylcholine 18:0 are related to a lower risk of common cancers in a prospective metabolomics study
  BMC Med. 14 , art. 13
  full text (doi)
• Kühn, T., Sookthai, D., Rolle-Kampczyk, U., Otto, W., Otto, W., von Bergen, M., Kaaks, R., Johnson, T. (2016):
  Mid- and long-term correlations of plasma metabolite concentrations measured by a targeted metabolomics approach
  Metabolomics 12 (12), art. 184
  full text (doi)
• Lünsmann, V., Kappelmeyer, U., Benndorf, R., Martínez-Lavanchy, P.M., Taubert, A., Adrian, L., Duarte, M., Pieper, D.H., von Bergen, M., Müller, J.A., Heipieper, H.J., Jehmlich, N. (2016):
  In situ protein-SIP highlights Burkholderiaceae as key players degrading toluene by para ring hydroxylation in a constructed wetland model
  Environ. Microbiol. 18 (4), 1176 - 1186
  full text (doi)
• Lünsmann, V., Kappelmeyer, U., Taubert, A., Nijenhuis, I., von Bergen, M., Heipieper, H.J., Müller, J.A., Jehmlich, N. (2016):
  Aerobic toluene degraders in the rhizosphere of a constructed wetland model show diurnal polyhydroxyalkanoate metabolism
  Appl. Environ. Microb. 82 (14), 4126 - 4132
  full text (doi)
• Mahnke, H., Ballent, M., Baumann, S., Imperiale, F., von Bergen, M., Lanusse, C., Lifschitz, A.L., Honscha, W., Halwachs, S. (2016):
  The ABCG2 efflux transporter in the mammary gland mediates veterinary drug secretion across the blood-milk barrier into milk of dairy cows
  Drug Metab. Dispos. 44 (5), 700 - 708
  full text (doi)
• Malik, A.A., Chowdhury, S., Schlager, V., Oliver, A., Puissant, J., Vazquez, P.G.M., Jehmlich, N., von Bergen, M., Griffiths, R.I., Gleixner, G. (2016):
  Soil fungal:bacterial ratios are linked to altered carbon cycling
  Front. Microbiol. 7 , art. 1247
  full text (doi)
• Mussotter, F., Tomm, J.M., El Ali, Z., Pallardy, M., Kerdine-Römer, S., Götz, M., von Bergen, M., Haase, A., Luch, A. (2016):
  Proteomics analysis of dendritic cell activation by contact allergens reveals possible biomarkers regulated by Nrf2
  Toxicol. Appl. Pharmacol. 313 , 170 - 179
  full text (doi)
• Rabus, R., Boll, M., Heider, J., Meckenstock, R.U., Buckel, W., Einsle, O., Ermler, U., Golding, B.T., Gunsalus, R.P., Kroneck, P.M.H., Krüger, M., Lueders, T., Martins, B.M., Musat, F., Richnow, H.H., Schink, B., Seifert, J., Szaleniec, M., Treude, T., Ullmann, G.M., Vogt, C., von Bergen, M., Wilkes, H. (2016):
  Anaerobic microbial degradation of hydrocarbons: from enzymatic reactions to the environment
  J. Mol. Microbiol. Biotechnol. 26 (1-3), 5 - 28
  full text (doi)
• Rolle-Kampczyk, U.E., Krumsiek, J., Otto, W., Röder, S.W., Kohajda, T., Borte, M., Theis, F., Lehmann, I., von Bergen, M. (2016):
  Metabolomics reveals effects of maternal smoking on endogenous metabolites from lipid metabolism in cord blood of newborns
  Metabolomics 12 (4), art. 76
  full text (doi)
• Rother, S., Samsonov, S.A., Hofmann, T., Blaszkiewicz, J., Köhling, S., Moeller, S., Schnabelrauch, M., Rademann, J., Kalkhof, S., von Bergen, M., Pisabarro, M.T., Scharnweber, D., Hintze, V. (2016):
  Structural and functional insights into the interaction of sulfated glycosaminoglycans with tissue inhibitor of metalloproteinase-3 – A possible regulatory role on extracellular matrix homeostasis
  Acta Biomater. 45 , 143 - 154
  full text (doi)
• Schaarschmidt, J., Nagel, M.B.M., Huth, S., Jaeschke, H., Moretti, R., Hintze, V., von Bergen, M., Kalkhof, S., Meiler, J., Paschke, R. (2016):
  Rearrangement of the extracellular domain/extracellular loop 1 interface is critical for thyrotropin receptor activation
  J. Biol. Chem. 291 , 14095 - 14108
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• Schaubeck, M., Clavel, T., Calasan, J., Lagkouvardos, I., Haange, S.B., Jehmlich, N., Basic, M., Dupont, A., Hornef, M., von Bergen, M., Bleich, A., Haller, D. (2016):
  Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence
  Gut 65 , 225 - 237
  full text (doi)
• Schiffmann, C.L., Otto, W., Hansen, R., Nielsen, P.H., Adrian, L., Seifert, J., von Bergen, M., Jehmlich, N. (2016):
  Proteomic dataset of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor
  Data Brief 7 , 253 - 256
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• Schmidt, J.R., Kliemt, S., Preissler, C., Moeller, S., von Bergen, M., Hempel, U., Kalkhof, S. (2016):
  Osteoblast-released matrix vesicles, regulation of activity and composition by sulfated and non-sulfated glycosaminoglycans
  Mol. Cell. Proteomics 15 , 558 - 572
  full text (doi)
• Schütze, N., Trojandt, S., Kuhn, S., Tomm, J.M., von Bergen, M., Simon, J.C., Polte, T. (2016):
  Allergen-induced IL-6 regulates IL-9/IL-17A balance in CD4⁺ T cells in allergic airway inflammation
  J. Immunol. 197 (7), 2653 - 2664
  full text (doi)
• Starke, R., Keller, A., Jehmlich, N., Vogt, C., Richnow, H.H., Kleinsteuber, S., von Bergen, M., Seifert, J. (2016):
  Pulsed ¹³C₂-acetate protein-SIP unveils Epsilonproteobacteria as dominant acetate utilizers in a sulfate-reducing microbial community mineralizing benzene
  Microb. Ecol. 71 (4), 901 - 911
  full text (doi)
• Starke, R., Kermer, R., Ullmann-Zeunert, L., Baldwin, I.T., Seifert, J., Bastida, F., von Bergen, M., Jehmlich, N. (2016):
  Bacteria dominate the short-term assimilation of plant-derived N in soil
  Soil Biol. Biochem. 96 , 30 - 38
  full text (doi)
• Tautenhahn, H.-M., Brückner, S., Baumann, S., Winkler, S., Otto, W., von Bergen, M., Bartels, M., Christ, B. (2016):
  Attenuation of postoperative acute liver failure by mesenchymal stem cell treatment due to metabolic implications
  Ann. Surg. 263 (3), 546 - 556
  full text (doi)
• Tiedt, O., Mergelsberg, M., Boll, K., Müller, M., Adrian, L., Jehmlich, N., von Bergen, M., Boll, M. (2016):
  ATP-dependent C–F bond cleavage allows the complete degradation of 4-fluoroaromatics without oxygen
  mBio 7 (4), e00990-16
  full text (doi)
• Trump, S., Bieg, M., Gu, Z., Thürmann, L., Bauer, T., Bauer, M., Ishaque, N., Röder, S., Gu, L., Herberth, G., Lawerenz, C., Borte, M., Schlesner, M., Plass, C., Diessl, N., Eszlinger, M., Mücke, O., Elvers, H.-D., Wissenbach, D.K., von Bergen, M., Herrmann, C., Weichenhan, D., Wright, R.J., Lehmann, I., Eils, R. (2016):
  Prenatal maternal stress and wheeze in children: novel insights into epigenetic regulation
  Sci. Rep. 6 , art. 28616
  full text (doi)
• Vogt, C., Lueders, T., Richnow, H.H., Krüger, M., von Bergen, M., Seifert, J. (2016):
  Stable isotope probing approaches to study anaerobic hydrocarbon degradation and degraders
  J. Mol. Microbiol. Biotechnol. 26 (1-3), 195 - 210
  full text (doi)
• Vorreiter, F., Richter, S., Peter, M., Baumann, S., von Bergen, M., Tomm, J.M. (2016):
  Comparison and optimization of methods for the simultaneous extraction of DNA, RNA, proteins, and metabolites
  Anal. Biochem. 508 , 25 - 33
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• Warnke, M., Jung, T., Dermer, J., Hipp, K., Jehmlich, N., von Bergen, M., Ferlaino, S., Fries, A., Müller, M., Boll, M. (2016):
  25-hydroxyvitamin D₃ synthesis by enzymatic steroid side-chain hydroxylation with water
  Angew. Chem.-Int. Edit. 55 (5), 1881 - 1884
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• Winkler, S., Kalkhof, S., Brückner, S., Hempel, M., Baumann, S., von Bergen, M., Christ, B. (2016):
  Identification of molecular pathways for stem cell therapy of non-alcoholic steatohepatitis in an immunodeficient mouse model
  J. Hepatol. 64 (2 (Suppl.)), S683
  full text (doi)
• Wissenbach, D.K., Oliphant, K., Rolle-Kampczyk, U., Yen, S., Höke, H., Baumann, S., Haange, S.B., Verdu, E.F., Allen-Vercoe, E., von Bergen, M. (2016):
  Optimization of metabolomics of defined in vitro gut microbial ecosystems
  Int. J. Med. Microbiol. 306 (5), 280 - 289
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• Wissenbach, D.K., Winkler, B., Otto, W., Kohajda, T., Roeder, S., Müller, A., Hoeke, H., Matysik, S., Schlink, U., Borte, M., Herbarth, O., Lehmann, I., von Bergen, M. (2016):
  Long-term indoor VOC concentrations assessment a trend analysis of distribution, disposition, and personal exposure in cohort study samples
  Air Qual. Atmos. Health 9 (8), 941 - 950
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2015 (31)

• Ahrens, V.M., Kostelnik, K.B., Rennert, R., Böhme, D., Kalkhof, S., Kosel, D., Weber, L., von Bergen, M., Beck-Sickinger, A.G. (2015):
  A cleavable cytolysin–neuropeptide Y bioconjugate enables specific drug delivery and demonstrates intracellular mode of action
  J. Control. Release 209 , 170 - 178
  full text (doi)
• Bargiela, R., Herbst, F.-A., Martínez-Martínez, M., Seifert, J., Rojo, D., Cappello, S., Genovese, M., Crisafi, F., Denaro, R., Chernikova, T.N., Barbas, C., von Bergen, M., Yakimov, M.M., Ferrer, M., Golyshin, P.N. (2015):
  Metaproteomics and metabolomics analyses of chronically petroleum-polluted sites reveal the importance of general anaerobic processes uncoupled with degradation
  Proteomics 15 (20), 3508 - 3520
  full text (doi)
• Bastida, F., García, C., von Bergen, M., Moreno, J.L., Richnow, H.H., Jehmlich, N. (2015):
  Deforestation fosters bacterial diversity and the cyanobacterial community responsible for carbon fixation processes under semiarid climate: a metaproteomics study
  Appl. Soil Ecol. 93 , 65 - 67
  full text (doi)
• Beyer, A., Baumann, S., Scherz, G., Stahl, J., von Bergen, M., Friese, A., Roesler, U., Kietzmann, M., Honscha, W. (2015):
  Effects of ceftiofur treatment on the susceptibility of commensal porcine E.coli – comparison between treated and untreated animals housed in the same stable
  BMC Vet. Res. 11 , art. 265
  full text (doi)
• Brückner, S., Tautenhahn, H.-M., Baumann, S., Winkler, S., Bartels, M., von Bergen, M., Christ, B. (2015):
  Mesenchymal stem cells (MSC) prevent liver failure after huge liver resection in rat
  Transplantation 99 (7S), 267
  full text (doi)
• Daims, H., Lebedeva, E.V., Pjevac, P., Han, P., Herbold, C., Albertsen, M., Jehmlich, N., Palatinszky, M., Vierheilig, J., Bulaev, A., Kirkegaard, R.H., von Bergen, M., Rattei, T., Bendinger, B., Nielsen, P.H., Wagner, M. (2015):
  Complete nitrification by Nitrospira bacteria
  Nature 528 (7583), 504 - 509
  full text (doi)
• Feltens, R., Roeder, S., Otto, W., Borte, M., Lehmann, I., von Bergen, M., Wissenbach, D.K. (2015):
  Evaluation of population and individual variances of urinary phthalate metabolites in terms of epidemiological studies
  Journal of Chromatography & Separation Techniques 6 (6), art. 1000290
  full text (doi)
• Goris, T., Schiffmann, C.L., Gadkari, J., Schubert, T., Seifert, J., Jehmlich, N., von Bergen, M., Diekert, G. (2015):
  Proteomics of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates
  Sci. Rep. 5 , art. 13794
  full text (doi)
• Grob, C., Taubert, M., Howat, A.M., Burns, O.J., Dixon, J.L., Richnow, H.H., Jehmlich, N., von Bergen, M., Chen, Y., Murrell, J.C. (2015):
  Combining metagenomics with metaproteomics and stable isotope probing reveals metabolic pathways used by a naturally occurring marine methylotroph
  Environ. Microbiol. 17 (10), 4007 - 4018
  full text (doi)
• Halwachs, S., Mahnke, H., Ballent, M., Baumann, S., von Bergen, M., Viviani, P., Lanusse, C., Honscha, W., Lifschitz, A. (2015):
  ABCG2-mediated transport of anthelmintic drugs in the mammary gland of dairy cows
  J. Vet. Pharmacol. Ther. 38 (S1), 43 - 44
  full text (doi)
• Herberth, G., Offenberg, K., Rolle-Kampczyk, U., Bauer, M., Otto, W., Röder, S., Grützmann, K., Sack, E., Simon, J.-C., Borte, M., von Bergen, M., Lehmann, I. (2015):
  Endogenous metabolites and inflammasome activity in early childhood and links to respiratory diseases
  J. Allergy Clin. Immunol. 136 (2), 495 - 497
  full text (doi)
• Hoeke, H., Roeder, S., Bertsche, T., Lehmann, I., Borte, M., von Bergen, M., Wissenbach, D.K. (2015):
  Monitoring of drug intake during pregnancy by questionnaires and LC-MS/MS drug urine screening: evaluation of both monitoring methods
  Drug Test. Anal. 7 (8), 695 - 702
  full text (doi)
• Hofmann, T., Samsonov, S.A., Pichert, A., Lemmnitzer, K., Schiller, J., Huster, D., Pisabarro, M.T., von Bergen, M., Kalkhof, S. (2015):
  Structural analysis of the interleukin-8/glycosaminoglycan interactions by amide hydrogen/deuterium exchange mass spectrometry
  Methods 89 , 45 - 53
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• Jouy, F., Müller, S.A., Wagner, J., Otto, W., von Bergen, M., Tomm, J.M. (2015):
  Integration of conventional quantitative and phospho-proteomics reveals new elements in activated Jurkat T-cell receptor pathway maintenance
  Proteomics 15 (1), 25 - 33
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• Kalkhof, S., Dautel, F., Loguercio, S., Baumann, S., Trump, S., Jungnickel, H., Otto, W., Rudzok, S., Potratz, S., Luch, A., Lehmann, I., Beyer, A., von Bergen, M. (2015):
  Pathway and time-resolved benzo[a]pyrene toxicity on Hepa1c1c7 cells at toxic and subtoxic exposure
  J. Proteome Res. 14 (1), 164 - 182
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• Klöting, N., Hesselbarth, N., Gericke, M., Kunath, A., Biemann, R., Chakaroun, R., Kosacka, J., Kovacs, P., Kern, M., Stumvoll, M., Fischer, B., Rolle-Kampczyk, U., Feltens, R., Otto, W., Wissenbach, D.K., von Bergen, M., Blüher, M. (2015):
  Di-(2-ethylhexyl)-phthalate (DEHP) causes impaired adipocyte function and alters serum metabolites
  PLOS One 10 (12), e0143190
  full text (doi)
• Kostelnik, K.B., Els-Heindl, S., Klöting, N., Baumann, S., von Bergen, M., Beck-Sickinger, A.G. (2015):
  High metabolic in vivo stability and bioavailability of a palmitoylated ghrelin receptor ligand assessed by mass spectrometry
  Bioorg. Med. Chem. 23 (14), 3925 - 3932
  full text (doi)
• Kümmel, S., Herbst, F.-A., Bahr, A., Duarte, M., Pieper, D.H., Jehmlich, N., Seifert, J., von Bergen, M., Bombach, P., Richnow, H.H., Vogt, C. (2015):
  Anaerobic naphthalene degradation by sulfate-reducing Desulfobacteraceae from various anoxic aquifers
  FEMS Microbiol. Ecol. 91 (3), fiv006
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• Linton, S.M., Cameron, M.S., Gray, M.C., Donald, J.A., Saborowski, R., von Bergen, M., Tomm, J.M., Allardyce, B.J. (2015):
  A glycosyl hydrolase family 16 gene is responsible for the endogenous production of β-1,3-glucanases within decapod crustaceans
  Gene 569 (2), 203 - 217
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• Müller, S.A., Pernitzsch, S.R., Haange, S.-B., Uetz, P., von Bergen, M., Sharma, C.M., Kalkhof, S. (2015):
  Stable isotope labeling by amino acids in cell culture based proteomics reveals differences in protein abundances between spiral and coccoid forms of the gastric pathogen Helicobacter pylori
  J. Proteomics 126 , 34 - 45
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• Palatinszky, M., Herbold, C., Jehmlich, N., Pogoda, M., Han, P., von Bergen, M., Lagkouvardos, I., Karst, S.M., Galushko, A., Koch, H., Berry, D., Daims, H., Wagner, M. (2015):
  Cyanate as an energy source for nitrifiers
  Nature 524 (7563), 105 - 108
  full text (doi)
• Pöritz, M., Schiffmann, C.L., Hause, G., Heinemann, U., Seifert, J., Jehmlich, N., von Bergen, M., Nijenhuis, I., Lechner, U. (2015):
  Dehalococcoides mccartyi strain DCMB5 respires a broad spectrum of chlorinated aromatic compounds
  Appl. Environ. Microb. 81 (2), 587 - 596
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• Remane, D., Grunwald, S., Hoeke, H., Mueller, A., Roeder, S., von Bergen, M., Wissenbach, D.K. (2015):
  Validation of a multi-analyte HPLC-DAD method for determination of uric acid, creatinine, homovanillic acid, niacinamide, hippuric acid, indole-3-acetic acid and 2-methylhippuric acid in human urine
  J. Chromatogr. B 998–999 , 40 - 44
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• Rösch, C., Wissenbach, D.K., von Bergen, M., Franck, U., Wendisch, M., Schlink, U. (2015):
  The lasting effect of limonene-induced particle formation on air quality in a genuine indoor environment
  Environ. Sci. Pollut. Res. 22 (18), 14209 - 14219
  full text (doi)
• Sachsenberg, T., Herbst, F.-A., Taubert, M., Kermer, R., Jehmlich, N., von Bergen, M., Seifert, J., Kohlbacher, O. (2015):
  MetaProSIP: Automated inference of stable isotope incorporation rates in proteins for functional metaproteomics
  J. Proteome Res. 14 (2), 619 - 627
  full text (doi)
• Schaubeck, M., Clavel, T., Lagkouvardos, M., Calasan, J., Haange, S.B., Jehmlich, N., von Bergen, M., Basic, M., Bleich, A., Haller, D. (2015):
  Transmissive Crohn's disease-like ileitis is caused by functional dysbiosis in the intestinal microbiota independent of inflammation-driven Paneth cell failure
  J. Crohns Colitis 9 (Suppl. 1), S1 - S1
  full text (doi)
• Scherz, G., Beyer, A., Stahl, J., Roesler, U., Friese, A., von Bergen, M., Kietzmann, M., Honscha, W. (2015):
  Occurrence of cephalosporin resistant and ESBL-producing commensal Escherichia coli in the microbiota from swine treated with ceftiofur
  J. Vet. Pharmacol. Ther. 38 (S1), 92 - 93
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• Seyhan, D., Jehmlich, N., von Bergen, M., Fersch, J., Rother, M. (2015):
  Selenocysteine-independent suppression of UGA codons in the archaeon Methanococcus maripaludis
  Biochim. Biophys. Acta-Gen. Subj. 1850 , 2385 - 2392
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• Tobalina, L., Bargiela, R., Pey, J., Herbst, F.-A., Lores, I., Rojo, D., Barbas, C., Peláez, A.I., Sánchez, J., von Bergen, M., Seifert, J., Ferrer, M., Planes, F.J. (2015):
  Context-specific metabolic network reconstruction of a naphthalene-degrading bacterial community guided by metaproteomic data
  Bioinformatics 31 (11), 1771 - 1779
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• Winkler, S., Kalkhof, S., Hempel, M., Brückner, S., von Bergen, M., Christ, B. (2015):
  Validierung des Modells der durch eine Methionin-Cholin-freie Diät induzierten Nicht-alkoholischer Steatohepatitis (NASH) durch Proteomanalysen
  Zeitschrift für Gastroenterologie 53 , KG090, 883
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• Zanker, D., Otto, W., Chen, W., von Bergen, M., Tomm, J. (2015):
  Compartment resolved reference proteome map from highly purified naïve, activated, effector, and memory CD8⁺ murine immune cells
  Proteomics 15 (11), 1808 - 1812
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2014 (20)

• Bastida, F., Jehmlich, N., Ondoño, S., von Bergen, M., García, C., Moreno, J.L. (2014):
  Characterization of the microbial community in biological soil crusts dominated by Fulgensia desertorum (Tomin) Poelt and Squamarina cartilaginea (With.) P. James and in the underlying soil
  Soil Biol. Biochem. 76 , 70 - 79
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• Baumann, S., Rockstroh, M., Bartel, J., Krumsiek, J., Otto, W., Jungnickel, H., Potratz, S., Luch, A., Wilscher, E., Theis, F.J., von Bergen, M., Tomm, J.M. (2014):
  Subtoxic concentrations of benzo[a]pyrene induce metabolic changes and oxidative stress in non-activated and affect the mTOR pathway in activated Jurkat T cells
  Journal of Integrated OMICS 4 (1), 11 - 20
  full text (doi)
• Bozinovski, D., Taubert, M., Kleinsteuber, S., Richnow, H.-H., von Bergen, M., Vogt, C., Seifert, J. (2014):
  Metaproteogenomic analysis of a sulfate-reducing enrichment culture reveals genomic organization of key enzymes in the m-xylene degradation pathway and metabolic activity of proteobacteria
  Syst. Appl. Microbiol. 37 (7), 488 - 501
  full text (doi)
• Franck, U., Weller, A., Röder, S.W., Herberth, G., Junge, K.M., Kohajda, T., von Bergen, M., Rolle-Kampczyk, U., Diez, U., Borte, M., Lehmann, I. (2014):
  Prenatal VOC exposure and redecoration are related to wheezing in early infancy
  Environ. Int. 73 , 393 - 401
  full text (doi)
• Herberth, G., Bauer, M., Gasch, M., Hinz, D., Röder, S., Olek, S., Kohajda, T., Rolle-Kampczyk, U., von Bergen, M., Sack, U., Borte, M., Lehmann, I. (2014):
  Maternal and cord blood miR-223 expression associates with prenatal tobacco smoke exposure and low regulatory T-cell numbers
  J. Allergy Clin. Immunol. 133 (2), 543 - 550.e4
  full text (doi)
• Imhasly, S., Naegeli, H., Baumann, S., von Bergen, M., Luch, A., Jungnickel, H., Potratz, S., Gerspach, C. (2014):
  Metabolomic biomarkers correlating with hepatic lipidosis in dairy cows
  BMC Vet. Res. 10 , art. 122
  full text (doi)
• Jungandreas, A., Schellenberger Costa, B., Jakob, T., von Bergen, M., Baumann, S., Wilhelm, C. (2014):
  The acclimation of Phaeodactylum tricornutum to blue and red light does not influence the photosynthetic light reaction but strongly disturbs the carbon allocation pattern
  PLOS One 9 (8), e99727
  full text (doi)
• Junge, K.M., Hörnig, F., Herberth, G., Röder, S., Kohajda, T., Rolle-Kampczyk, U., von Bergen, M., Borte, M., Simon, J.-C., Heroux, D., Denburg, J.A., Lehmann, I. (2014):
  The LINA cohort: cord blood eosinophil/basophil progenitors predict respiratory outcomes in early infancy
  Clin. Immunol. 152 (1-2), 68 - 76
  full text (doi)
• Jungnickel, H., Luch, A., Potratz, S., von Bergen, M., Baumann, S., Tarnow, P. (2014):
  Identification of lipidomic biomarkers for coexposure to subtoxic doses of benzo[a]pyrene and cadmium: the toxicological cascade biomarker approach
  Environ. Sci. Technol. 48 (17), 10423 - 10431
  full text (doi)
• Kalkhof, S., Förster, Y., Schmidt, J., Schulz, M.C., Baumann, S., Weißflog, A., Gao, W., Hempel, U., Eckelt, U., Rammelt, S., von Bergen, M. (2014):
  Proteomics and metabolomics for in situ monitoring of wound healing
  Biomed Res. Int. 2014 , art. 934848
  full text (doi)
• Kleindienst, S., Herbst, F.-A., Stagars, M., von Netzer, F., von Bergen, M., Seifert, J., Peplies, J., Amann, R., Musat, F., Lueders, T., Knittel, K. (2014):
  Diverse sulfate-reducing bacteria of the Desulfosarcina/Desulfococcus clade are the key alkane degraders at marine seeps
  ISME J. 8 (10), 2029 - 2044
  full text (doi)
• Lieder, S., Jahn, M., Seifert, J., von Bergen, M., Müller, S., Takors, R. (2014):
  Subpopulation-proteomics reveal growth rate, but not cell cycling, as a major impact on protein composition in Pseudomonas putida KT2440
  AMB Express 4 , art. 71
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• Marozava, S., Röling, W.F.M., Seifert, J., Küffner, R., von Bergen, M., Meckenstock, R.U. (2014):
  Physiology of Geobacter metallireducens under excess and limitation of electron donors. Part I. Batch cultivation with excess of carbon sources
  Syst. Appl. Microbiol. 37 (4), 277 - 286
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• Marozava, S., Röling, W.F.M., Seifert, J., Küffner, R., von Bergen, M., Meckenstock, R.U. (2014):
  Physiology of Geobacter metallireducens under excess and limitation of electron donors. Part II. Mimicking environmental conditions during cultivation in retentostats
  Syst. Appl. Microbiol. 37 (4), 287 - 295
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• Mussotter, F., Haase, A., Tomm, J.M., El Ali, Z., Kerdine-Römer, S., Pallardy, M., von Bergen, M., Luch, A. (2014):
  A proteomics approach to elucidate the role of Nrf2 in primary bone-marrow-derived dendritic cells of mice upon activation by contact allergens
  Toxicol. Lett. 229 (Suppl.), S203
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• Oberbach, A., Schlichting, N., Neuhaus, J., Kullnick, Y., Lehmann, S., Heinrich, M., Dietrich, A., Mohr, F.W., von Bergen, M., Baumann, S. (2014):
  Establishing a reliable multiple reaction monitoring-based method for the quantification of obesity-associated comorbidities in serum and adipose tissue requires intensive clinical validation
  J. Proteome Res. 13 (12), 5784 - 5800
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• Rösch, C., Kohajda, T., Röder, S., von Bergen, M., Schlink, U. (2014):
  Relationship between sources and patterns of VOCs in indoor air
  Atmos. Pollut. Res. 5 (1), 129 - 137
  full text (doi)
• Schiffmann, C., Hansen, R., Baumann, S., Kublik, A., Nielsen, P.H., Adrian, L., von Bergen, M., Jehmlich, N., Seifert, J. (2014):
  Comparison of targeted peptide quantification assays for reductive dehalogenases by selective reaction monitoring (SRM) and precursor reaction monitoring (PRM)
  Anal. Bioanal. Chem. 406 (1), 283 - 291
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• Schiffmann, C.L., Jehmlich, N., Otto, W., Hansen, R., Nielsen, P.H., Adrian, L., Seifert, J., von Bergen-Tomm, M. (2014):
  Proteome profile and proteogenomics of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor
  J. Proteomics 98 , 59 - 64
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• Uhlmann, K., Gibb, S., Kalkhof, S., Arroyo-Abad, U., Schulz, C., Hoffmann, B., Stubbins, F., Carpenter, S., Beer, M., von Bergen, M., Feltens, R. (2014):
  Species determination of Culicoides biting midges via peptide profiling using matrix-assisted laser desorption ionization mass spectrometry
  Parasites Vectors 7 , 392
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2013 (30)

• Baumann, S., Kalkhof, S., Hackermüller, J., Otto, W., Tomm, J.M., Wissenbach, D.K., Rolle-Kampczyk, U., von Bergen, M. (2013):
  Requirements and perspectives for integrating metabolomics with other omics data
  Current Metabolomics 1 (1), 15 - 27
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• Blumert, C., Kalkhof, S., Brocke-Heidrich, K., Kohajda, T., von Bergen, M., Horn, F. (2013):
  Analysis of the STAT3 interactome using in-situ biotinylation and SILAC
  J. Proteomics 94 , 370 - 386
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• Bodelier, P.L.E., Meima-Franke, M., Hordijk, C.A., Steenbergh, A.K., Hefting, M.E., Bodrossy, L., von Bergen, M., Seifert, J. (2013):
  Microbial minorities modulate methane consumption through niche partitioning
  ISME J. 7 (11), 2214 - 2228
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• Boll, K., Reiche, K., Kasack, K., Mörbt, N., Kretzschmar, A.K., Tomm, J.M., Verhaegh, G., Schalken, J., von Bergen, M., Horn, F., Hackermüller, J. (2013):
  MiR-130a, miR-203 and miR-205 jointly repress key oncogenic pathways and are downregulated in prostate carcinoma
  Oncogene 32 , 277 - 285
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• Eberlein, C., Estelmann, S., Seifert, J., von Bergen, M., Müller, M., Meckenstock, R.U., Boll, M. (2013):
  Identification and characterization of 2-naphthoyl-coenzyme A reductase, the prototype of a novel class of dearomatizing reductases
  Mol. Microbiol. 88 (5), 1032 - 1039
  full text (doi)
• Ferrer, M., Ruiz, A., Lanza, F., Haange, S.-B., Oberbach, A., Till, H., Bargiela, R., Campoy, C., Segura, M.T., Richter, M., von Bergen, M., Seifert, J., Suarez, A. (2013):
  Microbiota from the distal guts of lean and obese adolescents exhibit partial functional redundancy besides clear differences in community structure
  Environ. Microbiol. 15 (1), 211 - 226
  full text (doi)
• Guazzaroni, M.-E., Herbst, F.-A., Lores, I., Tamames, J., Peláez, A.I., López-Cortés, N., Alcaide, M., del Pozo, M.V., Vieites, J.M., von Bergen, M., Gallego, J.L.R., Bargiela, R., López-López, A., Pieper, D.H., Rosselló-Móra, R., Sánchez, J., Seifert, J., Ferrer, M. (2013):
  Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation
  ISME J. 7 (1), 122 - 136
  full text (doi)
• Herberth, G., Bauer, M., Gasch, M., Hinz, D., Röder, S., Olek, S., Kohajda, T., Rolle-Kampczyk, U., von Bergen-Tomm, M., Sack, U., Borte, M., Lehmann, I. (2013):
  Maternal and cord blood miR-223 expression associates with prenatal tobacco smoke exposure and with low Treg numbers
  Allergy 68 (Suppl. 97), 628 - 628
  full text (doi)
• Herbst, F.-A., Bahr, A., Duarte, M., Pieper, D.H., Richnow, H.-H., von Bergen, M., Seifert, J., Bombach, P. (2013):
  Elucidation of in situ polycyclic aromatic hydrocarbon degradation by functional metaproteomics (protein-SIP)
  Proteomics 13 (18-19), 2910 - 2920
  full text (doi)
• Herbst, F.-A., Taubert, M., Jehmlich, N., Behr, T., Schmidt, F., von Bergen, M., Seifert, J. (2013):
  Sulfur-³⁴S stable isotope labeling of amino acids for quantification (SULAQ34) of proteomic changes in Pseudomonas fluorescens during naphthalene degradation
  Mol. Cell. Proteomics 12 (8), 2060 - 2069
  full text (doi)
• Jahn, M., Seifert, J., Hübschmann, T., von Bergen, M., Harms, H., Müller, S. (2013):
  Comparison of preservation methods for bacterial cells in cytomics and proteomics
  Journal of Integrated OMICS 3 (1), 25 - 33
  full text (doi)
• Jahn, M., Seifert, J., von Bergen, M., Schmid, A., Bühler, B., Müller, S. (2013):
  Subpopulation-proteomics in prokaryotic populations
  Curr. Opin. Biotechnol. 24 (1), 79 - 87
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• Jechalke, S., Franchini, A., Bastida, F., Bombach, P., Rosell, M., Seifert, J., von Bergen, M., Vogt, C., Richnow, H.H. (2013):
  Analysis of structure, function, and activity of a benzene-degrading microbial community
  FEMS Microbiol. Ecol. 85 (1), 14 - 26
  full text (doi)
• Kliemt, S., Lange, C., Otto, W., Hintze, V., Möller, S., von Bergen, M., Hempel, U., Kalkhof, S. (2013):
  Sulfated hyaluronan containing collagen matrices enhance cell-matrix-interaction, endocytosis, and osteogenic differentiation of human mesenchymal stromal cells
  J. Proteome Res. 12 (1), 378 - 389
  full text (doi)
• Kung, J.W., Seifert, J., von Bergen, M., Boll, M. (2013):
  Cyclohexanecarboxyl-coenzyme A (CoA) and cyclohex-1-ene-1-carboxyl-CoA dehydrogenases, two enzymes involved in the fermentation of benzoate and crotonate in Syntrophus aciditrophicus
  J. Bacteriol. 195 (14), 3193 - 3200
  full text (doi)
• Leibeling, S., Maeß, M.B., Centler, F., Kleinsteuber, S., von Bergen, M., Thullner, M., Harms, H., Müller, R.H. (2013):
  Posttranslational oxidative modification of (R)-2-(2,4-dichlorophenoxy)propionate/α-ketoglutarate-dependent dioxygenases (RdpA) leads to improved degradation of 2,4-dichlorophenoxyacetate (2,4-D)
  Eng. Life Sci. 13 (3), 278 - 291
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• Markle, J.G.M., Frank, D.N., Mortin-Toth, S., Robertson, C.E., Feazel, L.M., Rolle-Kampczyk, U., von Bergen, M., McCoy, C.D., Macpherson, A.J., Danska, J.S. (2013):
  Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity
  Science 339 (6123 ), 1084 - 1088
  full text (doi)
• Müller, S.A., Findeiß, S., Pernitzsch, S.R., Wissenbach, D.K., Stadler, P.F., Hofacker, I.L., von Bergen, M., Kalkhof, S. (2013):
  Identification of new protein coding sequences and signal peptidase cleavage sites of Helicobacter pylori strain 26695 by proteogenomics
  J. Proteomics 86 , 27 - 42
  full text (doi)
• Murugaiyan, J., Rockstroh, M., Wagner, J., Baumann, S., Schorsch, K., Trump, S., Lehmann, I., von Bergen, M., Tomm, J.M. (2013):
  Benzo[a]pyrene affects Jurkat T cells in the activated state via the antioxidant response element dependent Nrf2 pathway leading to decreased IL-2 secretion and redirecting glutamine metabolism
  Toxicol. Appl. Pharmacol. 269 (3), 307 - 316
  full text (doi)
• Murugaiyan, J., Weise, C., von Bergen, M., Roesler, U. (2013):
  Two-dimensional proteome reference map of Prototheca zopfii revealed reduced metabolism and enhanced signal transduction as adaptation to an infectious life style
  Proteomics 13 (17), 2664 - 2669
  full text (doi)
• Murugesan, K., Baumann, S., Wissenbach, D.K., Kliemt, S., Kalkhof, S., Otto, W., Mögel, I., Kohajda, T., von Bergen, M., Tomm, J.M. (2013):
  Subtoxic and toxic concentrations of benzene and toluene induce Nrf-2 mediated anti-oxidative stress response and affect the central carbon metabolism in lung epithelial cells A549
  Proteomics 13 (21), 3211 - 3221
  full text (doi)
• Pérez-Cobas, A.E., Gosalbes, M.J., Friedrichs, A., Knecht, H., Artacho, A., Eismann, K., Otto, W., Rojo, D., Bargiela, R., von Bergen, M., Neulinger, S.C., Däumer, C., Heinsen, F.A., Latorre, A., Barbas, C., Seifert, J., Martins dos Santos, V., Ott, S.J., Ferrer, M., Moya, A. (2013):
  Gut microbiota disturbance during antibiotic therapy: a multi-omic approach
  Gut 62 , 1591 - 1601
  full text (doi)
• Seifert, J., Herbst, F.-A., Nielsen, P.H., Planes, F.J., Ferrer, M., von Bergen, M. (2013):
  Bioinformatic progress and applications in metaproteogenomics for bridging the gap between genomic sequences and metabolic functions in microbial communities
  Proteomics 13 (18-19), 2786 - 2804
  full text (doi)
• Siegert, M., Taubert, M., Seifert, J., von Bergen-Tomm, M., Basen, M., Bastida, F., Gehre, M., Richnow, H.-H., Krüger, M. (2013):
  The nitrogen cycle in anaerobic methanotrophic mats of the Black Sea is linked to sulfate reduction and biomass decomposition
  FEMS Microbiol. Ecol. 86 (2), 231 - 245
  full text (doi)
• Taubert, M., von Bergen-Tomm, M., Seifert, J. (2013):
  Limitations in detection of 15N incorporation by mass spectrometry in protein-based stable isotope probing (protein-SIP)
  Anal. Bioanal. Chem. 405 (12), 3989 - 3996
  full text (doi)
• Tomm, J.M., Krause, C., Simon, J.C., Treudler, R., von Bergen, M., Averbeck, M. (2013):
  Pyruvate kinase and phosphopyruvate hydratase as novel IgE reactive proteins in prawn
  J. Invest. Allergol. Clin. Immunol. 23 (6), 443 - 445
• Tomm, J.M., Otto, W., Servos, U., Bertram, B., von Bergen, M., Baumann, S. (2013):
  Starvation of Jurkat T cells causes metabolic switch from glycolysis to lipolysis as revealed by comprehensive GC-qMS
  Journal of Integrated OMICS 3 (1), 70 - 74
  full text (doi)
• Tomm, J.M., van Do, T., Jende, C., Simon, J.C., Treudler, R., von Bergen, M., Averbeck, M. (2013):
  Identification of new potential allergens from Nile perch (Lates niloticus) and Cod (Gadus morhua)
  J. Invest. Allergol. Clin. Immunol. 23 (3), 159 - 167
• von Bergen, M., Jehmlich, N., Taubert, M., Vogt, C., Bastida, F., Herbst, F.-A., Schmidt, F., Richnow, H.-H., Seifert, J. (2013):
  Insights from quantitative metaproteomics and protein-stable isotope probing into microbial ecology
  ISME J. 7 (10), 1877 - 1885
  full text (doi)
• Weisse, K., Winkler, S., Hirche, F., Herberth, G., Hinz, D., Bauer, M., Röder, S., Rolle-Kampczyk, U., von Bergen, M., Olek, S., Richter, T., Diez, U., Borte, M., Stangl, G.I., Lehmann, I. (2013):
  Maternal and newborn vitamin D status and its impact on food allergy development in the German LINA cohort study
  Allergy 68 (2), 220 - 228
  full text (doi)

2012 (25)

• Baumgarten, T., Sperling, S., Seifert, J., von Bergen, M., Steiniger, F., Wick, L.Y., Heipieper, H.J. (2012):
  Membrane vesicle formation as a multiple-stress response mechanism enhances Pseudomonas putida DOT-T1E cell surface hydrophobicity and biofilm formation
  Appl. Environ. Microb. 78 (17), 6217 - 6224
  full text (doi)
• Bönisch, U., Böhme, A., Kohajda, T., Mögel, I., Schütze, N., von Bergen, M., Simon, J.C., Lehmann, I., Polte, T. (2012):
  Volatile organic compounds enhance allergic airway inflammation in an experimental mouse model
  PLoS One 7 (7), e39817
  full text (doi)
• Bozinovski, D., Herrmann, S., Richnow, H.-H., von Bergen, M., Seifert, J., Vogt, C. (2012):
  Functional analysis of an anaerobic m-xylene-degrading enrichment culture using protein-based stable isotope probing
  FEMS Microbiol. Ecol. 81 (1), 134 - 144
  full text (doi)
• Goettsch, C., Kliemt, S., Sinningen, K., von Bergen, M., Hofbauer, L.C., Kalkhof, S. (2012):
  Quantitative proteomics reveals novel functions of osteoclast-associated receptor in STAT signaling and cell adhesion in human endothelial cells
  J. Mol. Cell. Cardiol. 53 (6), 829 - 837
  full text (doi)
• Gündel, U., Kalkhof, S., Zitzkat, D.P., von Bergen, M., Altenburger, R., Küster, E. (2012):
  Concentration-response concept in ecotoxicoproteomics: effects of different phenanthrene concentrations to the zebrafish (Danio rerio) embryo proteome
  Ecotox. Environ. Safe. 76 (1), 11 - 22
  full text (doi)
• Haange, S.-B., Oberbach, A., Schlichting, N., Hugenholtz, F., Smidt, H., von Bergen, M., Till, H., Seifert, J. (2012):
  Metaproteome analysis and molecular genetics of rat intestinal microbiota reveals section and localisation resolved species distribution and enzymatic functionalities
  J. Proteome Res. 11 (11), 5406 - 5417
  full text (doi)
• Haas, S., Jahnke, H.-G., Moerbt, N., von Bergen, M., Aharinejad, S., Andrukhova, O., Robitzki, A.A. (2012):
  DIGE proteome analysis reveals suitability of ischemic cardiac in vitro model for studying cellular response to acute ischemia and regeneration
  PLoS One 7 (2), e31669
  full text (doi)
• Hörnig, F., Weisse, K., Röder, S., Kohajda, T., von Bergen-Tomm, M., Borte, M., Diez, U., Simon, J., Denburg, J., Lehmann, I. (2012):
  Infantile eosinophil/basophil progenitors are more sensitive to indoor chemical exposures compared to their mothers
  Allergy 67 (Suppl. 96), 574 - 574
  full text (doi)
• Jehmlich, N., Kopinke, F.-D., Lenhard, S., Vogt, C., Herbst, F.-A., Seifert, J., Lissner, U., Völker, U., Schmidt, F., von Bergen, M. (2012):
  Sulfur-³⁶S stable isotope labeling of amino acids for quantification (SULAQ)
  Proteomics 12 (1), 37 - 42
  full text (doi)
• Kespohl, S., Kotschy-Lang, N., Tomm, J.M., von Bergen, M., Maryska, S., Brüning, T., Raulf-Heimsoth, M. (2012):
  Occupational IgE-mediated softwood allergy: characterization of the causative allergen
  Int. Arch. Allergy Immunol. 157 (2), 202 - 208
  full text (doi)
• Marco-Urrea, E., Seifert, J., von Bergen, M., Adrian, L. (2012):
  Stable isotope peptide mass spectrometry to decipher amino acid metabolism in Dehalococcoides strain CBDB1
  J. Bacteriol. 194 (16), 4169 - 4177
  full text (doi)
• Morris, B.E.L., Herbst, F.-A., Bastida, F., Seifert, J., von Bergen, M., Richnow, H.-H., Suflita, J.M. (2012):
  Microbial interactions during residual oil and n-fatty acid metabolism by a methanogenic consortium
  Environ. Microbiol. Rep. 4 (3), 297 - 306
  full text (doi)
• Müller, S.A., van der Smissen, A., von Feilitzsch, M., Anderegg, U., Kalkhof, S., von Bergen, M. (2012):
  Quantitative proteomics reveals altered expression of extracellular matrix related proteins of human primary dermal fibroblasts in response to sulfated hyaluronan and collagen applied as artificial extracellular matrix
  J. Mater. Sci.-Mater. Med. 23 (12), 3053 - 3065
  full text (doi)
• Oberbach, A., von Bergen, M., Blueher, S., Lehmann, S., Till, H. (2012):
  Combined serum proteomic and metabonomic profiling after laparoscopic sleeve gastrectomy in children and adolescents
  J. Laparoendosc. Adv. Surg. Tech. 22 (2), 184 - 188
  full text (doi)
• Oberender, J., Kung, J.W., Seifert, J., von Bergen, M., Boll, M. (2012):
  Identification and characterization of a succinyl-coenzyme A (CoA):benzoate CoA transferase in Geobacter metallireducens
  J. Bacteriol. 194 (10), 2501 - 2508
  full text (doi)
• Pohler, P., Lehmann, J., Veneruso, V., Tomm, J., von Bergen, M., Lambrecht, B., Kohn, B., Weingart, C., Müller, T.H., Seltsam, A. (2012):
  Evaluation of the tolerability and immunogenicity of ultraviolet C-irradiated autologous platelets in a dog model
  Transfusion 52 (11), 2414 - 2426
  full text (doi)
• Reinhold, A., Westermann, M., Seifert, J., von Bergen, M., Schubert, T., Diekert, G. (2012):
  Impact of vitamin B₁₂ on the formation of the tetrachloroethene reductive dehalogenase in Desulfitobacterium hafniense strain Y51
  Appl. Environ. Microb. 78 (22), 8025 - 8032
  full text (doi)
• Salbach, J., Kliemt, S., Rauner, M., Rachner, T.D., Goettsch, C., Kalkhof, S., von Bergen, M., Möller, S., Schnabelrauch, M., Hintze, V., Scharnweber, D., Hofbauer, L.C. (2012):
  The effect of the degree of sulfation of glycosaminoglycans on osteoclast function and signaling pathways
  Biomaterials 33 (33), 8418 - 8429
  full text (doi)
• Seifert, J., Taubert, M., Jehmlich, N., Schmidt, F., Völker, U., Vogt, C., Richnow, H.H., von Bergen, M. (2012):
  Protein-based stable isotope probing (protein-SIP) in functional metaproteomics
  Mass Spectrom. Rev. 31 (6), 683 - 697
  full text (doi)
• Taubert, M., Vogt, C., Wubet, T., Kleinsteuber, S., Tarkka, M.T., Harms, H., Buscot, F., Richnow, H.-H., von Bergen, M., Seifert, J. (2012):
  Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium
  ISME J. 6 (12), 2291 - 2301
  full text (doi)
• von Bergen, M., Reiche, K., Hösler, N., Rockstroh, M., Horn, F., Hackermüller, J., Tomm, J. (2012):
  A time resolved analysis of nc/mRNA and protein expression throughout Th cell activation
  Immunology 137 (Suppl. S1), 364 - 364
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• Weisse, K., Lehmann, I., Heroux, D., Kohajda, T., Herberth, G., Röder, S., von Bergen, M., Borte, M., Denburg, J. (2012):
  The LINA cohort: indoor chemical exposure, circulating eosinophil/basophil (Eo/B) progenitors and early life skin manifestations
  Clin. Exp. Allergy 42 (9), 1337 - 1346
  full text (doi)
• Weisse, K., Winkler, S., Stangl, G.I., Hirche, F., Herberth, G., Hinz, D., Bauer, M., Röder, S., Rolle-Kampczyk, U., von Bergen-Tomm, M., Olek, S., Sack, U., Borte, M., Richter, T., Lehmann, I. (2012):
  Maternal and newborn vitamin D status and its impact on fetal regulatory T cell development and children's atopy risk in the German LINA cohort study
  J. Reprod. Immunol. 94 (1), 53 - 54
  full text (doi)
• Wirth, H., von Bergen, M., Binder, H. (2012):
  Mining SOM expression portraits: feature selection and integrating concepts of molecular function
  BioData Min. 5 (October), art. 18
  full text (doi)
• Wirth, H., von Bergen, M., Murugaiyan, J., Roesler, U., Stokowy, T., Binder, H. (2012):
  MALDI-typing of infectious algae of the genus Prototheca using SOM portraits
  J. Microbiol. Methods 88 (1), 83 - 89
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2011 (21)

• Bastida, F., Jechalke, S., Bombach, P., Franchini, A.G., Seifert, J., von Bergen, M., Vogt, C., Richnow, H.H. (2011):
  Assimilation of benzene carbon through multiple trophic levels traced by different stable isotope probing methodologies
  FEMS Microbiol. Ecol. 77 (2), 357 - 369
  full text (doi)
• Dautel, F., Kalkhof, S., Trump, S., Lehmann, I., Beyer, A., von Bergen, M. (2011):
  Large-scale 2-D DIGE studies - guidelines to overcome pitfalls and challenges along the experimental procedure
  Journal of Integrated OMICS 1 (1), 170 - 179
  full text (doi)
• Dautel, F., Kalkhof, S., Trump, S., Michaelson, J., Beyer, A., Lehmann, I., von Bergen, M. (2011):
  DIGE-based protein expression analysis of B[a]P-exposed hepatoma cells reveals a complex stress response including alterations in oxidative stress, cell cycle control, and cytoskeleton motility at toxic and subacute concentrations
  J. Proteome Res. 10 (2), 379 - 393
  full text (doi)
• Dietrich, A., Blüher, M., Jonas, S., Shang, E., Till, H., von Bergen, M., Oberbach, A. (2011):
  Metabolic effects of sleeve gastrectomy on different serum proteins
  Obes. Surg. 21 (8), 1064 - 1064
  full text (doi)
• Georgieva, D., Seifert, J., Öhler, M., von Bergen, M., Spencer, P., Arni, R.K., Genov, N., Betzel, C. (2011):
  Pseudechis australis venomics: adaptation for a defense against microbial pathogens and recruitment of body transferrin
  J. Proteome Res. 10 (5), 2440 - 2464
  full text (doi)
• Goodman, V., Müller, A., Gröger-Arndt, H., Schlosser, D., Jehmlich, N., Treudler, R., Lehmann, I., Simon, J.-C., von Bergen, M. (2011):
  Identification of spore specific allergen candidates from Penicillium chrysogenum
  Journal of Integrated OMICS 1 (2), 272 - 279
  full text (doi)
• Jehmlich, N., Seifert, J., Taubert, M., Schmidt, F., Vogt, C., Richnow, H.H., von Bergen, M. (2011):
  Protein stable isotope probing
  In: Murrell, J.C., Whiteley, A.S. (eds.)
  Stable isotope probing and related technologies
  ASM Press, Washington, DC, p. 71 - 93
• Kuntze, K., Kiefer, P., Baumann, S., Seifert, J., von Bergen, M., Vorholt, J.A., Boll, M. (2011):
  Enzymes involved in the anaerobic degradation of meta-substituted halobenzoates
  Mol. Microbiol. 82 (3), 758 - 769
  full text (doi)
• Marco-Urrea, E., Paul, S., Khodaverdi, V., Seifert, J., von Bergen, M., Kretzschmar, U., Adrian, L. (2011):
  Identification and characterization of a Re-Citrate synthase in Dehalococcoides strain CBDB1
  J. Bacteriol. 193 (19), 5171 - 5178
  full text (doi)
• Michaelson, J., Trump, S., Rudzok, S., Gräbsch, C., Madureira, D.J., Dautel, F., Mai, J., Attinger, S., Schirmer, K., von Bergen, M., Lehmann, I., Beyer, A. (2011):
  Transcriptional signatures of regulatory and toxic responses to benzo-[a]-pyrene exposure
  BMC Genomics 12 , art. 502
  full text (doi)
• Mögel, I., Baumann, S., Böhme, A., Kohajda, T., von Bergen, M., Simon, J.-C., Lehmann, I. (2011):
  The aromatic volatile organic compounds toluene, benzene and styrene induce COX-2 and prostaglandins in human lung epithelial cells via oxidative stress and p38 MAPK activation
  Toxicology 289 (1), 28 - 37
  full text (doi)
• Mörbt, N., Feltens, R., Tomm, J., Kalkhof, S., Mögel, I., Vogt, C., Lehmann, I., von Bergen, M. (2011):
  Chlorinated benzenes cause concomitantly oxidative stress and induction of apoptotic markers in lung epithelial cells (A549) at non-acute toxic concentrations
  J. Proteome Res. 10 (2), 363 - 378
  full text (doi)
• Oberbach, A., Blüher, M., Wirth, H., Till, H., Kovacs, P., Kullnick, Y., Schlichting, N., Tomm, J.M., Rolle-Kampczyk, U., Murugaiyan, J., Binder, H., Dietrich, A., von Bergen, M. (2011):
  Combined proteomic and metabolomic profiling of serum reveals association of the complement system with obesity and identifies novel markers of body fat mass changes
  J. Proteome Res. 10 (10), 4769 - 4788
  full text (doi)
• Oberbach, A., Till, H., Dietrich, A., Shang, E., von Bergen, M. (2011):
  Integrated proteomic and lipidomic analysis of secretory phospholipase A2 and lysophosphatidylcholines metabolism following sleeve gastrectomy
  Obes. Surg. 21 (8), 1064 - 1065
  full text (doi)
• Rockstroh, M., Müller, S.A., Jende, C., Kerzhner, A., von Bergen, M., Tomm, J.M. (2011):
  Cell fractionation - an important tool for compartment proteomics
  Journal of Integrated OMICS 1 (1), 135 - 143
  full text (doi)
• Schmitt, J., Chen, C.M., Apfelbacher, C., Romanos, M., Lehmann, I., Herbarth, O., Schaaf, B., Kraemer, U., von Bergen, M., Wichmann, H.-E., Heinrich, J. (2011):
  Infant eczema, infant sleeping problems, and mental health at 10 years of age: the prospective birth-cohort study LISAplus
  Allergy 66 (3), 404 - 411
  full text (doi)
• Schramedei, K., Mörbt, N., Pfeifer, G., Läuter, J., Rosolowski, M., Tomm, J.M., von Bergen, M., Horn, F., Brocke-Heidrich, K. (2011):
  MicroRNA-21 targets tumor suppressor genes ANP32A and SMARCA4
  Oncogene 30 (6), 2975 - 2985
  full text (doi)
• Taubert, M., Baumann, S., von Bergen, M., Seifert, J. (2011):
  Exploring the limits of robust detection of incorporation of 13C by mass spectrometry in protein-based stable isotope probing (protein-SIP)
  Anal. Bioanal. Chem. 401 (6), 1975 - 1982
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• Taubert, M., Jehmlich, N., Vogt, C., Richnow, H.H., Schmidt, F., von Bergen, M., Seifert, J. (2011):
  Time resolved protein-based stable isotope probing (Protein-SIP) analysis allows quantification of induced proteins in substrate shift experiments
  Proteomics 11 (11), 2265 - 2274
  full text (doi)
• Washietl, S., Findeiss, S., Müller, S.A., Kalkhof, S., von Bergen, M., Hofacker, I.L., Stadler, P.F., Goldmann, N. (2011):
  RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data
  RNA 17 (4), 578 - 594
  full text (doi)
• Wirth, H., Löffler, M., von Bergen, M., Binder, H. (2011):
  Expression cartography of human tissues using self organizing maps
  BMC Bioinformatics 12 , art. 306
  full text (doi)

2010