Contact

Helmholtz-Centre for
Environmental Research - UFZ

Department of Molekular Systems Biology
Permoserstr. 15, 04318 Leipzig

Telefon: +49 341 235 4767

Fax: +49 314 235 450823

nico.jehmlich@ufz.de

Research Networks

Research Interests

Education and Background

Publications

2018 (13)

• Bastida, F., Jehmlich, N., Torres, I.F., García, C., (2018):
  The extracellular metaproteome of soils under semiarid climate: A methodological comparison of extraction buffers
  Sci. Total Environ. 619–620 , 707 - 711
  full text (url)
• Becher, E., Heese, A., Claußen, L., Eisen, S., Jehmlich, N., Rohwerder, T., Purswani, J., (2018):
  Active site alanine preceding catalytic cysteine determines unique substrate specificity in bacterial CoA‐acylating prenal dehydrogenase
  FEBS Lett. 592 (7), 1150 - 1160
  full text (url)
• Cerdó, T., Ruiz, A., Acuña, I., Jáuregui, R., Jehmlich, N., Haange, S.-B., von Bergen, M., Suárez, A., Campoy, C., (2018):
  Gut microbial functional maturation and succession during human early life
  Environ. Microbiol. 20 (6), 2160 - 2177
  full text (url)
• Chupani, L., Niksirat, H., Lünsmann, V., Haange, S.-B., von Bergen, M., Jehmlich, N., Zuskova, E., (2018):
  Insight into the modulation of intestinal proteome of juvenile common carp (Cyprinus carpio L.) after dietary exposure to ZnO nanoparticles
  Sci. Total Environ. 613-614 , 62 - 71
  full text (url)
• Lechner, U., Türkowsky, D., Dinh, T.T.H., Al-Fathi, H., Schwoch, S., Franke, S., Gerlach, M.-S., Koch, M., von Bergen, M., Jehmlich, N., Dang, T.C.H., (2018):
  Desulfitobacterium contributes to the microbial transformation of 2,4,5‐T by methanogenic enrichment cultures from a Vietnamese active landfill
  Microb. Biotechnol. 11 (6), 1137 - 1156
  full text (url)
• Malik, A.A., Puissant, J., Buckeridge, K.M., Goodall, T., Jehmlich, N., Chowdhury, S., Gweon, H.S., Peyton, J.M., Mason, K.E., van Agtmaal, M., Blaud, A., Clark, I.A., Whitaker, J., Pywell, R.F., Ostle, N., Gleixner, G., Griffiths, R.I., (2018):
  Land use driven change in soil pH affects microbial carbon cycling processes
  Nat. Commun. 9 , art. 3591
  full text (url)
• Starke, R., Jehmlich, N., Bastida, F., (2018):
  Using proteins to study how microbes contribute to soil ecosystem services: The current state and future perspectives of soil metaproteomics
  J. Proteomics
  full text (url)
• Taubert, M., Stöckel, S., Geesink, P., Girnus, S., Jehmlich, N., von Bergen, M., Rösch, P., Popp, J., Küsel, K., (2018):
  Tracking active groundwater microbes with D₂O labelling to understand their ecosystem function
  Environ. Microbiol. 20 (1), 369 - 384
  full text (url)
• Türkowsky, D., Esken, J., Goris, T., Schubert, T., Diekert, G., Jehmlich, N., von Bergen, M., (2018):
  A retentive memory of tetrachloroethene respiration in Sulfurospirillum halorespirans - involved proteins and a possible link to acetylation of a two-component regulatory system
  J. Proteomics 181 , 36 - 46
  full text (url)
• Türkowsky, D., Jehmlich, N., Diekert, G., Adrian, L., von Bergen, M., Goris, T., (2018):
  An integrative overview of genomic, transcriptomic and proteomic analyses in organohalide respiration research
  FEMS Microbiol. Ecol. 94 (3), fiy013
  full text (url)
• Türkowsky, D., Lohmann, P., Mühlenbrink, M., Schubert, T., Adrian, L., Goris, T., Jehmlich, N., von Bergen, M., (2018):
  Thermal proteome profiling allows quantitative assessment of interactions between tetrachloroethene reductive dehalogenase and trichloroethene
  J. Proteomics
  full text (url)
• Vásquez-Piñeros, M.A., Martínez-Lavanchy, P.M., Jehmlich, N., Pieper, D.H., Rincón, C.A., Harms, H., Junca, H., Heipieper, H.J., (2018):
  Delftia sp. LCW, a strain isolated from a constructed wetland shows novel properties for dimethylphenol isomers degradation
  BMC Microbiol. 18 , art. 108
  full text (url)
• Wintsche, B., Jehmlich, N., Popp, D., Harms, H., Kleinsteuber, S., (2018):
  Metabolic adaptation of methanogens in anaerobic digesters upon trace element limitation
  Front. Microbiol. 9 , art. 405
  full text (url)

2017 (13)

• Bastida, F., Torres, I.F., Andrés-Abellán, M., Baldrian, P., López-Mondéjar, R., Větrovský, T., Richnow, H.H., Starke, R., Ondoño, S., García, C., López-Serrano, F., Jehmlich, N., (2017):
  Differential sensitivity of total and active soil microbial communities to drought and forest management
  Glob. Change Biol. 23 (10), 4185 - 4203
  full text (url)
• Chupani, L., Zusková, É., Niksirat, H., Panáček, A., Lünsmann, V., Haange, S.-B., von Bergen, M., Jehmlich, N., (2017):
  Effects of chronic dietary exposure of zinc oxide nanoparticles on the serum protein profile of juvenile common carp (Cyprinus carpio L.)
  Sci. Total Environ. 579 , 1504 - 1511
  full text (url)
• Ebenau-Jehle, C., Mergelsberg, M., Fischer, S., Brüls, T., Jehmlich, N., von Bergen, M., Boll, M., (2017):
  An unusual strategy for the anoxic biodegradation of phthalate
  ISME J. 11 (1), 224 - 236
  full text (url)
• Herbold, C.W., Lehtovirta-Morley, L.E., Jung, M.-Y., Jehmlich, N., Hausmann, B., Han, P., Loy, A., Pester, M., Sayavedra-Soto, L.A., Rhee, S.-K., Prosser, J.I., Nicol, G.W., Wagner, M., Gubry-Rangin, C., (2017):
  Ammonia-oxidising archaea living at low pH: Insights from comparative genomics
  Environ. Microbiol. 19 , 4939 - 4952
  full text (url)
• Kadisch, M., Julsing, M.K., Schrewe, M., Jehmlich, N., Scheer, B., von Bergen, M., Schmid, A., Bühler, B., (2017):
  Maximization of cell viability rather than biocatalyst activity improves whole-cell ω-oxyfunctionalization performance
  Biotechnol. Bioeng. 114 (4), 874 - 884
  full text (url)
• Kiebist, J., Schmidtke, K.-U., Zimmermann, J., Kellner, H., Jehmlich, N., Ullrich, R., Zänder, D., Hofrichter, M., Scheibner, K., (2017):
  A peroxygenase from Chaetomium globosum catalyzes the selective oxygenation of testosterone
  ChemBioChem 18 (6), 563 - 569
  full text (url)
• Oberbach, A., Haange, S.-B., Schlichting, N., Heinrich, M., Lehmann, S., Till, H., Hugenholtz, F., Kullnick, Y., Smidt, H., Frank, K., Seifert, J., Jehmlich, N., von Bergen, M., (2017):
  Metabolic in vivo labeling highlights differences of metabolically active microbes from the mucosal gastrointestinal microbiome between high-fat and normal chow diet
  J. Proteome Res. 16 (4), 1593 - 1604
  full text (url)
• Pinaud, L., Ferrari, M.L., Friedman, R., Jehmlich, N., von Bergen, M., Phalipon, A., Sansonetti, P.J., Campbell-Valois, F.-X., (2017):
  Identification of novel substrates of Shigella T3SA through analysis of its virulence plasmid-encoded secretome
  PLOS One 12 (10), e0186920
  full text (url)
• Starke, R., Bastida, F., Abadía, J., García, C., Nicolás, E., Jehmlich, N., (2017):
  Ecological and functional adaptations to water management in a semiarid agroecosystem: a soil metaproteomics approach
  Sci. Rep. 7 , art. 10221
  full text (url)
• Starke, R., Müller, M., Gaspar, M., Marz, M., Küsel, K., Totsche, K.U., von Bergen, M., Jehmlich, N., (2017):
  Candidate Brocadiales dominates C, N and S cycling in anoxic groundwater of a pristine limestone-fracture aquifer
  J. Proteomics 152 , 153 - 160
  full text (url)
• Taubert, M., Grob, C., Howar, A.M., Burns, O.J., Pratscher, J., Jehmlich, N., von Bergen, M., Richnow, H.H., Chen, Y., Murrell, J.C., (2017):
  Methylamine as a nitrogen source for microorganisms from a coastal marine environment
  Environ. Microbiol. 19 (6), 2246 - 2257
  full text (url)
• Teumer, A., Qi, Q., Nethander, M., Aschard, H., Bandinelli, S., Beekman, M., Berndt, S.I., Bidlingmaier, M., Broer, L., Cappola, A., Ceda, G.P., Chanock, S., Chen, M.-H., Chen, T.C., Chen, Y.-D.I., Chung, J., Del Greco Miglianico, F., Eriksson, J., Ferrucci, L., Friedrich, N., Gnewuch, C., Goodarzi, M.O., Grarup, N., Guo, T., Hammer, E., Hayes, R.B., Hicks, A.A., Hofman, A., Houwing-Duistermaat, J.J., Hu, F., Hunter, D.J., Husemoen, L.L., Isaacs, A., Jacobs, K.B., Janssen, J.A.M.J.L., Jansson, J.-O., Jehmlich, N., Johnson, S., Juul, A., Karlsson, M., Kilpelainen, T.O., Kovacs, P., Kraft, P., Li, C., Linneberg, A., Liu, Y., Loos, R.J.F., Lorentzon, M., Lu, Y., Maggio, M., Magi, R., Meigs, J., Mellström, D., Nauck, M., Newman, A.B., Pollak, M.N., Pramstaller, P.P., Prokopenko, I., Psaty, B.M., Reincke, M., Rimm, R.B., Rotter, J.I., Saint Pierre, A., Schurmann, C., Seshadri, S., Sjögren, K., Slagboom, P.E., Strickler, H.D., Stumvoll, M., Suh, Y., Sun, Q., Zhang, C., Svensson, J., Tanaka, T., Tare, A., Tönjes, A., Uh, H.-W., van Duijn, C., van Heemst, D., Vandenput, L., Vasan, R.S., Völker, U., Willems, S.M., Ohlsson, C., Wallaschofski, H., Kaplan, R.C., (2017):
  Erratum: Genomewide meta-analysis identifies loci associated with IGF-I and IGFBP-3 levels with impact on age-related traits (vol 15, pg 811, 2016)
  Aging Cell 16 (4), 898
  full text (url)
• Warnke, M., Jacoby, C., Jung, T., Agne, M., Mergelsberg, M., Starke, R., Jehmlich, N., von Bergen, M., Richnow, H.-H., Brüls, T., Boll, M., (2017):
  A patchwork pathway for oxygenase-independent degradation of side chain containing steroids
  Environ. Microbiol. 19 (11), 4684 - 4699
  full text (url)

2016 (20)

• Bastida, F., Jehmlich, N., (2016):
  It's all about functionality: How can metaproteomics help us to discuss the attributes of ecological relevance in soil?
  J. Proteomics 144 , 159 - 161
  full text (url)
• Bastida, F., Jehmlich, N., Lima, K., Morris, B.E.L., Richnow, H.H., Hernández, T., von Bergen, M., García, C., (2016):
  The ecological and physiological responses of the microbial community from a semiarid soil to hydrocarbon contamination and its bioremediation using compost amendment
  J. Proteomics 135 , 162 - 169
  full text (url)
• Bastida, F., Torres, I.F., Moreno, J.L., Baldrian, P., Ondoño, S., Ruiz-Navarro, A., Hernández, T., Richnow, H.H., Starke, R., García, C., Jehmlich, N., (2016):
  The active microbial diversity drives ecosystem multifunctionality and is physiologically related to carbon availability in Mediterranean semi-arid soils
  Mol. Ecol. 25 (18), 4660 - 4673
  full text (url)
• Dey, P., Gola, D., Mishra, A., Malik, A., Kumar, P., Singh, D.K., Patel, N., von Bergen, M., Jehmlich, N., (2016):
  Comparative performance evaluation of multi-metal resistant fungal strains for simultaneous removal of multiple hazardous metals
  J. Hazard. Mater. 318 , 679 - 685
  full text (url)
• Goris, T., Schiffmann, C.L., Gadkari, J., Adrian, L., von Bergen, M., Diekert, G., Jehmlich, N., (2016):
  Proteomic data set of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates
  Data in Brief 8 , 637 - 642
  full text (url)
• Haange, S.-B., Jehmlich, N., (2016):
  Proteomic interrogation of the gut microbiota: potential clinical impact
  Expert Rev. Proteomics 13 (6), 535 - 537
  full text (url)
• Herbst, F.-A., Lünsmann, V., Kjeldal, H., Jehmlich, N., Tholey, A., von Bergen, M., Nielsen, J.L., Hettich, R.L., Seifert, J., Nielsen, P.H., (2016):
  Enhancing metaproteomics—The value of models and defined environmental microbial systems
  Proteomics 16 (5), 783 - 798
  full text (url)
• Jehmlich, N., Vogt, C., Lünsmann, V., Richnow, H.H., von Bergen, M., (2016):
  Protein-SIP in environmental studies
  Curr. Opin. Biotechnol. 41 , 26 - 33
  full text (url)
• Lünsmann, V., Kappelmeyer, U., Benndorf, R., Martínez-Lavanchy, P.M., Taubert, A., Adrian, L., Duarte, M., Pieper, D.H., von Bergen, M., Müller, J.A., Heipieper, H.J., Jehmlich, N., (2016):
  In situ protein-SIP highlights Burkholderiaceae as key players degrading toluene by para ring hydroxylation in a constructed wetland model
  Environ. Microbiol. 18 (4), 1176 - 1186
  full text (url)
• Lünsmann, V., Kappelmeyer, U., Taubert, A., Nijenhuis, I., von Bergen, M., Heipieper, H.J., Müller, J.A., Jehmlich, N., (2016):
  Aerobic toluene degraders in the rhizosphere of a constructed wetland model show diurnal polyhydroxyalkanoate metabolism
  Appl. Environ. Microb. 82 (14), 4126 - 4132
  full text (url)
• Malik, A.A., Chowdhury, S., Schlager, V., Oliver, A., Puissant, J., Vazquez, P.G.M., Jehmlich, N., von Bergen, M., Griffiths, R.I., Gleixner, G., (2016):
  Soil fungal:bacterial ratios are linked to altered carbon cycling
  Front. Microbiol. 7 , art. 1247
  full text (url)
• Men, Y., Han, P., Helbling, D.E., Jehmlich, N., Herbold, C., Gulde, R., Onnis-Hayden, A., Gu, A.Z., Johnson, D.R., Wagner, M., Fenner, K., (2016):
  Biotransformation of two pharmaceuticals by the ammonia-oxidizing archaeon Nitrososphaera gargensis
  Environ. Sci. Technol. 50 (9), 4682 - 4692
  full text (url)
• Oberbach, A., Adams, V., Schlichting, N., Heinrich, M., Kullnick, Y., Lehmann, S., Lehmann, S., Feder, S., Correia, J.C., Mohr, F.-W., Völker, U., Jehmlich, N., (2016):
  Proteome profiles of HDL particles of patients with chronic heart failure are associated with immune response and also include bacteria proteins
  Clin. Chim. Acta 453 , 114 - 122
  full text (url)
• Schaubeck, M., Clavel, T., Calasan, J., Lagkouvardos, I., Haange, S.B., Jehmlich, N., Basic, M., Dupont, A., Hornef, M., von Bergen, M., Bleich, A., Haller, D., (2016):
  Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence
  Gut 65 , 225 - 237
  full text (url)
• Schiffmann, C.L., Otto, W., Hansen, R., Nielsen, P.H., Adrian, L., Seifert, J., von Bergen, M., Jehmlich, N., (2016):
  Proteomic dataset of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor
  Data in Brief 7 , 253 - 256
  full text (url)
• Starke, R., Keller, A., Jehmlich, N., Vogt, C., Richnow, H.H., Kleinsteuber, S., von Bergen, M., Seifert, J., (2016):
  Pulsed ¹³C₂-acetate protein-SIP unveils Epsilonproteobacteria as dominant acetate utilizers in a sulfate-reducing microbial community mineralizing benzene
  Microb. Ecol. 71 (4), 901 - 911
  full text (url)
• Starke, R., Kermer, R., Ullmann-Zeunert, L., Baldwin, I.T., Seifert, J., Bastida, F., von Bergen, M., Jehmlich, N., (2016):
  Bacteria dominate the short-term assimilation of plant-derived N in soil
  Soil Biol. Biochem. 96 , 30 - 38
  full text (url)
• Teumer, A., Qi, Q., Nethander, M., Aschard, H., Bandinelli, S., Beekman, M., Berndt, S.I., Bidlingmaier, M., Broer, L., Cappola, A., Ceda, G.P., Chanock, S., Chen, M.-H., Chen, T.C., Chen, Y.-D.I., Chung, J., Del Greco Miglianico, F., Eriksson, J., Ferrucci, L., Friedrich, N., Gnewuch, C., Goodarzi, M.O., Grarup, N., Guo, T., Hammer, E., Hayes, R.B., Hicks, A.A., Hofman, A., Houwing-Duistermaat, J.J., Hu, F., Hunter, D.J., Husemoen, L.L., Isaacs, A., Jacobs, K.B., Janssen, J.A.M.J.L., Jansson, J.-O., Jehmlich, N., Johnson, S., Juul, A., Karlsson, M., Kilpelainen, T.O., Kovacs, P., Kraft, P., Li, C., Linneberg, A., Liu, Y., Loos, R.J.F., Lorentzon, M., Lu, Y., Maggio, M., Magi, R., Meigs, J., Mellström, D., Nauck, M., Newman, A.B., Pollak, M.N., Pramstaller, P.P., Prokopenko, I., Psaty, B.M., Reincke, M., Rimm, R.B., Rotter, J.I., Saint Pierre, A., Schurmann, C., Seshadri, S., Sjögren, K., Slagboom, P.E., Strickler, H.D., Stumvoll, M., Suh, Y., Sun, Q., Zhang, C., Svensson, J., Tanaka, T., Tare, A., Tönjes, A., Uh, H.-W., van Duijn, C., van Heemst, D., Vandenput, L., Vasan, R.S., Völker, U., Willems, S.M., Ohlsson, C., Wallaschofski, H., Kaplan, R.C., (2016):
  Genomewide meta-analysis identifies loci associated with IGF-I and IGFBP-3 levels with impact on age-related traits
  Aging Cell 15 (5), 811 - 824
  full text (url)
• Tiedt, O., Mergelsberg, M., Boll, K., Müller, M., Adrian, L., Jehmlich, N., von Bergen, M., Boll, M., (2016):
  ATP-dependent C–F bond cleavage allows the complete degradation of 4-fluoroaromatics without oxygen
  mBio 7 (4), e00990-16
  full text (url)
• Warnke, M., Jung, T., Dermer, J., Hipp, K., Jehmlich, N., von Bergen, M., Ferlaino, S., Fries, A., Müller, M., Boll, M., (2016):
  25-hydroxyvitamin D₃ synthesis by enzymatic steroid side-chain hydroxylation with water
  Angew. Chem.-Int. Edit. 55 (5), 1881 - 1884
  full text (url)

2015 (11)

• Bastida, F., García, C., von Bergen, M., Moreno, J.L., Richnow, H.H., Jehmlich, N., (2015):
  Deforestation fosters bacterial diversity and the cyanobacterial community responsible for carbon fixation processes under semiarid climate: a metaproteomics study
  Appl. Soil Ecol. 93 , 65 - 67
  full text (url)
• Daims, H., Lebedeva, E.V., Pjevac, P., Han, P., Herbold, C., Albertsen, M., Jehmlich, N., Palatinszky, M., Vierheilig, J., Bulaev, A., Kirkegaard, R.H., von Bergen, M., Rattei, T., Bendinger, B., Nielsen, P.H., Wagner, M., (2015):
  Complete nitrification by Nitrospira bacteria
  Nature 528 (7583), 504 - 509
  full text (url)
• Goris, T., Schiffmann, C.L., Gadkari, J., Schubert, T., Seifert, J., Jehmlich, N., von Bergen, M., Diekert, G., (2015):
  Proteomics of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates
  Sci. Rep. 5 , art. 13794
  full text (url)
• Grob, C., Taubert, M., Howat, A.M., Burns, O.J., Dixon, J.L., Richnow, H.H., Jehmlich, N., von Bergen, M., Chen, Y., Murrell, J.C., (2015):
  Combining metagenomics with metaproteomics and stable isotope probing reveals metabolic pathways used by a naturally occurring marine methylotroph
  Environ. Microbiol. 17 (10), 4007 - 4018
  full text (url)
• Hartwig, S., Thomas, C., Krumova, N., Quitzke, V., Türkowsky, D., Jehmlich, N., Adrian, L., Sawers, R.G., (2015):
  Heterologous complementation studies in Escherichia coli with the Hyp accessory protein machinery from Chloroflexi provide insight into [NiFe]-hydrogenase large subunit recognition by the HypC protein family
  Microbiology-(UK) 161 (11), 2204 - 2219
  full text (url)
• Kümmel, S., Herbst, F.-A., Bahr, A., Duarte, M., Pieper, D.H., Jehmlich, N., Seifert, J., von Bergen, M., Bombach, P., Richnow, H.H., Vogt, C., (2015):
  Anaerobic naphthalene degradation by sulfate-reducing Desulfobacteraceae from various anoxic aquifers
  FEMS Microbiol. Ecol. 91 (3), fiv006
  full text (url)
• Palatinszky, M., Herbold, C., Jehmlich, N., Pogoda, M., Han, P., von Bergen, M., Lagkouvardos, I., Karst, S.M., Galushko, A., Koch, H., Berry, D., Daims, H., Wagner, M., (2015):
  Cyanate as an energy source for nitrifiers
  Nature 524 (7563), 105 - 108
  full text (url)
• Pöritz, M., Schiffmann, C.L., Hause, G., Heinemann, U., Seifert, J., Jehmlich, N., von Bergen, M., Nijenhuis, I., Lechner, U., (2015):
  Dehalococcoides mccartyi strain DCMB5 respires a broad spectrum of chlorinated aromatic compounds
  Appl. Environ. Microb. 81 (2), 587 - 596
  full text (url)
• Sachsenberg, T., Herbst, F.-A., Taubert, M., Kermer, R., Jehmlich, N., von Bergen, M., Seifert, J., Kohlbacher, O., (2015):
  MetaProSIP: Automated inference of stable isotope incorporation rates in proteins for functional metaproteomics
  J. Proteome Res. 14 (2), 619 - 627
  full text (url)
• Schaubeck, M., Clavel, T., Lagkouvardos, M., Calasan, J., Haange, S.B., Jehmlich, N., von Bergen, M., Basic, M., Bleich, A., Haller, D., (2015):
  Transmissive Crohn's disease-like ileitis is caused by functional dysbiosis in the intestinal microbiota independent of inflammation-driven Paneth cell failure
  J. Crohns Colitis 9 (Suppl. 1), S1 - S1
  full text (url)
• Seyhan, D., Jehmlich, N., von Bergen, M., Fersch, J., Rother, M., (2015):
  Selenocysteine-independent suppression of UGA codons in the archaeon Methanococcus maripaludis
  Biochim. Biophys. Acta-Gen. Subj. 1850 , 2385 - 2392
  full text (url)