2021 (11)

• Anders, J., Petruschke, H., Jehmlich, N., Haange, S.-B., von Bergen, M., Stadler, P.F., (2021):
  A workflow to identify novel proteins based on the direct mapping of peptide-spectrum-matches to genomic locations
  BMC Bioinformatics 22 , art. 277
  full text (doi)
• Bastida, F., Jehmlich, N., Starke, R., Benndorf, D., López-Mondéjar, R., Plaza, C., Freixino, Z., Ramírez-Ortuño, C., Ruiz-Navarro, A., Díaz-López, M., Vera, A., Moreno, J.L., Eldridge, D.J., García, C., Delgado-Baquerizo, M., (2021):
  Structure and function of bacterial metaproteomes across biomes
  Soil Biol. Biochem. 160 , art. 108331
  full text (doi)
• Kasmanas, J.C., Bartholomäus, A., Borim Corrêa, F., Tal, T., Jehmlich, N., Herberth, G., von Bergen, M., Stadler, P.F., de Carvalho, A.C.P.L.F., Nunes da Rocha, U., (2021):
  HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes
  Nucleic Acids Res. 49 (D1), D743 - D750
  full text (doi)
• Kimani, V., Ullrich, R., Büttner, E., Herzog, R., Kellner, H., Jehmlich, N., Hofrichter, M., Liers, C., (2021):
  First dye-decolorizing peroxidase from an ascomycetous fungus secreted by Xylaria grammica
  Biomolecules 11 (9), art. 1391
  full text (doi)
• Kruse, S., Türkowsky, D., Birkigt, J., Matturro, B., Franke, S., Jehmlich, N., von Bergen, M., Westermann, M., Rossetti, S., Nijenhuis, I., Adrian, L., Diekert, G., Goris, T., (2021):
  Interspecies metabolite transfer and aggregate formation in a co-culture of Dehalococcoides and Sulfurospirillum dehalogenating tetrachloroethene to ethene
  ISME J. 15 (6), 1794 - 1809
  full text (doi)
• Li, Q., Cooper, R.E., Wegner, C.-E., Taubert, M., Jehmlich, N., von Bergen, M., Küsel, K., (2021):
  Insights into autotrophic activities and carbon flow in iron-rRich pelagic aggregates (iron snow)
  Microorganisms 9 (7), art. 1368
  full text (doi)
• Petruschke, H., Schori, C., Canzler, S., Riesbeck, S., Poehlein, A., Daniel, R., Frei, D., Segessemann, T., Zimmerman, J., Marinos, G., Kaleta, C., Jehmlich, N., Ahrens, C.H., von Bergen, M., (2021):
  Discovery of novel community-relevant small proteins in a simplified human intestinal microbiome
  Microbiome 9 , art. 55
  full text (doi)
• Rughöft, S., Jehmlich, N., Gutierrez, T., Kleindienst, S., (2021):
  Comparative proteomics of Marinobacter sp. TT1 reveals corexit impacts on hydrocarbon metabolism, chemotactic motility, and biofilm formation
  Microorganisms 9 (1), art. 3
  full text (doi)
• Starke, R., Fernandes, M.L.P., Morais, D.K., Odriozola, I., Baldrian, P., Jehmlich, N., (2021):
  Explorative meta-analysis of 417 extant archaeal genomes to predict their contribution to the total microbiome functionality
  Microorganisms 9 (2), art. 381
  full text (doi)
• Starke, R., Schäpe, S.S., Jehmlich, N., von Bergen, M., (2021):
  Protein stable isotope probing with H₂¹⁸O differentiated cold stress response at permissive temperatures from general growth at optimal conditions in Escherichia coli K12
  Rapid Commun. Mass Spectrom. 35 (1), e8941
  full text (doi)
• Starke, R., Siles, J.A., Fernandes, M.L.P., Schallert, K., Benndorf, D., Plaza, C., Jehmlich, N., Delgado-Baquerizo, M., Bastida, F., (2021):
  The structure and function of soil archaea across biomes
  J. Proteomics 237 , art. 104147
  full text (doi)

2020 (23)

• Ananbeh, H., Merlos Rodrigo, M.A., Jelinkova, P., Strmiska, V., Splichal, Z., Jehmlich, N., Michalkova, H., Stojanović, M., Voberkova, S., Adam, V., Moulick, A., (2020):
  Soil protein as a potential antimicrobial agent against methicillin-resistant Staphylococcus aureus
  Environ. Res. 188 , art. 109320
  full text (doi)
• Dey, P., Malik, A., Mishra, A., Singh, D.K., von Bergen, M., Jehmlich, N., (2020):
  Mechanistic insight to mycoremediation potential of a metal resistant fungal strain for removal of hazardous metals from multimetal pesticide matrix
  Environ. Pollut. 262 , art. 114255
  full text (doi)
• Farag, M.A., Abdelwareth, A., Sallam, I.E., el Shorbagi, M., Jehmlich, N., Fritz, K., Schaepe, S., Rolle-Kampczyk, U., Ehrlich, A., Wessjohann, L.A., von Bergen, M., (2020):
  Metabolomics reveals impact of seven functional foods on metabolic pathways in a gut microbiota model
  J. Adv. Res. 23 , 47 - 59
  full text (doi)
• Fritz-Wallace, K., Engelmann, B., Krause, J.L., Schäpe, S.S., Pöppe, J., Herberth, G., Rösler, U., Jehmlich, N., von Bergen, M., Rolle-Kampczyk, U., (2020):
  Quantification of glyphosate and AMPA from microbiome reactor fluids
  Rapid Commun. Mass Spectrom. 34 (7), e8668
  full text (doi)
• Haange, S.-B., Jehmlich, N., Krügel, U., Hintschich, C., Wehrmann, D., Hankir, M., Seyfried, F., Froment, J., Hübschmann, T., Müller, S., Wissenbach, D.K., Kang, K.H., Buettner, C., Panagiotou, G., Noll, M., Rolle-Kampczyk, U., Fenske, W., von Bergen, M., (2020):
  Gastric bypass surgery in a rat model alters the community structure and functional composition of the intestinal microbiota independently of weight loss
  Microbiome 8 , art. 13
  full text (doi)
• Jacoby, C., Krull, J., Andexer, J., Jehmlich, N., von Bergen, M., Brüls, T., Boll, M., (2020):
  Channeling C1 metabolism toward S-adenosylmethionine-dependent conversion of estrogens to androgens in estrogen-degrading bacteria
  mBio 11 (4), e01259-20
  full text (doi)
• Kipping, L., Holzscheck, N., Maurer, F., Muszynski, S., Noll, M., Jehmlich, N., (2020):
  Microbial metaproteome data from decayed beech dead wood
  Data in Brief 29 , art. 105285
  full text (doi)
• Krause, J.L., Haange, S.-B., Schäpe, S.S., Engelmann, B., Rolle-Kampczyk, U., Fritz-Wallace, K., Wang, Z., Jehmlich, N., Türkowsky, D., Schubert, K., Pöppe, J., Bote, K., Rösler, U., Herberth, G., von Bergen, M., (2020):
  The glyphosate formulation Roundup^® LB plus influences the global metabolome of pig gut microbiota in vitro
  Sci. Total Environ. 745 , art. 140932
  full text (doi)
• Krause, J.L., Schaepe, S.S., Fritz-Wallace, K., Engelmann, B., Rolle-Kampczyk, U., Kleinsteuber, S., Schattenberg, F., Liu, Z., Müller, S., Jehmlich, N., von Bergen, M., Herberth, G., (2020):
  Following the community development of SIHUMIx – a new intestinal in vitro model for bioreactor use
  Gut Microbes 11 (4), 1116 - 1129
  full text (doi)
• Krause, J.L., Schäpe, S.S., Schattenberg, F., Müller, S., Ackermann, G., Rolle-Kampczyk, U.E., Jehmlich, N., Pierzchalski, A., von Bergen, M., Herberth, G., (2020):
  The activation of mucosal-associated invariant T (MAIT) cells is affected by microbial diversity and riboflavin utilization in vitro
  Front. Microbiol. 11 , art. 755
  full text (doi)
• Lohmann, P., Benk, S., Gleixner, G., Potthast, K., Michalzik, B., Jehmlich, N., von Bergen, M., (2020):
  Seasonal patterns of dominant microbes involved in central nutrient cycles in the subsurface
  Microorganisms 8 (11), art. 1694
  full text (doi)
• Lohmann, P., Schäpe, S.S., Haange, S.-B., Oliphant, K., Allen-Vercoe, E., Jehmlich, N., von Bergen, M., (2020):
  Function is what counts: how microbial community complexity affects species, proteome and pathway coverage in metaproteomics
  Expert Rev. Proteomics 17 (2), 163 - 173
  full text (doi)
• Mendler, A., Geier, F., Haange, S.-B., Pierzchalski, A., Krause, J.L., Nijenhuis, I., Froment, J., Jehmlich, N., Berger, U., Ackermann, G., Rolle-Kampczyk, U., von Bergen, M., Herberth, G., (2020):
  Mucosal-associated invariant T-Cell (MAIT) activation is altered by chlorpyrifos- and glyphosate-treated commensal gut bacteria
  J. Immunotoxicol. 17 (1), 10 - 20
  full text (doi)
• Meyer-Cifuentes, I.E., Werner, J., Jehmlich, N., Will, S.E., Neumann-Schaal, M., Öztürk, B., (2020):
  Synergistic biodegradation of aromatic-aliphatic copolyester plastic by a marine microbial consortium
  Nat. Commun. 11 , art. 5790
  full text (doi)
• Meyer-Cifuentes, I., Gruhl, S., Haange, S.-B., Lünsmann, V., Jehmlich, N., von Bergen, M., Heipieper, H.J., Müller, J.A., (2020):
  Benzylsuccinate synthase is post-transcriptionally regulated in the toluene-degrading denitrifier Magnetospirillum sp. strain 15-1
  Microorganisms 8 (5), art. 681
  full text (doi)
• Pereira, F.C., Wasmund, K., Cobankovic, I., Jehmlich, N., Herbold, C.W., Lee, K.S., Sziranyi, B., Vesely, C., Decker, T., Stocker, R., Warth, B., von Bergen, M., Wagner, M., Berry, D., (2020):
  Rational design of a microbial consortium of mucosal sugar utilizers reduces Clostridiodes difficile colonization
  Nat. Commun. 11 , art. 5104
  full text (doi)
• Petruschke, H., Anders, J., Stadler, P.F., Jehmlich, N., von Bergen, M., (2020):
  Enrichment and identification of small proteins in a simplified human gut microbiome
  J. Proteomics 213 , art. 103604
  full text (doi)
• Rohwerder, T., Rohde, M.-T., Jehmlich, N., Purswani, J., (2020):
  Actinobacterial degradation of 2-hydroxyisobutyric acid proceeds via acetone and formyl-CoA by employing a thiamine-dependent lyase reaction
  Front. Microbiol. 11 , art. 691
  full text (doi)
• Ros, M., Blaya, J., Baldrian, P., Bastida, F., Richnow, H.H., Jehmlich, N., Pascual, J.A., (2020):
  In vitro elucidation of suppression effects of composts to soil-borne pathogen Phytophthora nicotianae on pepper plants using 16S amplicon sequencing and metaproteomics
  Renew. Agr. Food Syst. 35 (2), 206 - 214
  full text (doi)
• Schäpe, S.S., Krause, J.L., Masanetz, R.K., Riesbeck, S., Starke, R., Rolle-Kampczyk, U., Eberlein, C., Heipieper, H.J., Herberth, G., von Bergen, M., Jehmlich, N., (2020):
  Environmentally relevant concentration of bisphenol S shows slight effects on SIHUMIx
  Microorganisms 8 (9), art. 1436
  full text (doi)
• Starke, R., Capek, P., Morais, D., Callister, S.J., Jehmlich, N., (2020):
  The total microbiome functions in bacteria and fungi
  J. Proteomics 213 , art. 103623
  full text (doi)
• Starke, R., Capek, P., Morais, D., Jehmlich, N., Baldrian, P., (2020):
  Explorative meta-analysis of 377 extant fungal genomes predicted a total mycobiome functionality of 42.4 million KEGG functions
  Front. Microbiol. 11 , art. 143
  full text (doi)
• Starke, R., Oliphant, K., Jehmlich, N., Schäpe, S.S., Sachsenberg, T., Kohlbacher, O., Allen-Vercoe, E., von Bergen, M., (2020):
  Tracing incorporation of heavy water into proteins for species-specific metabolic activity in complex communities
  J. Proteomics 222 , art. 103791
  full text (doi)

2019 (16)

• Anselmann, S.E.L., Löffler, C., Stärk, H.-J., Jehmlich, N., von Bergen, M., Brüls, T., Boll, M., (2019):
  The class II benzoyl‐coenzyme A reductase complex from the sulfate‐reducing Desulfosarcina cetonica
  Environ. Microbiol. 21 (11), 4241 - 4252
  full text (doi)
• Bastida, F., García, C., Fierer, N., Eldridge, D.J., Bowker, M.A., Abades, S., Alfaro, F.D., Berhe, A.A., Cutler, N.A., Gallardo, A., García-Velázquez, L., Hart, S.C., Hayes, P.E., Hernández, T., Hseu, Z.-Y., Jehmlich, N., Kirchmair, M., Lambers, H., Neuhauser, S., Peña-Ramírez, V.M., Pérez, C.A., Reed, S.C., Santos, F.A.M., Siebe, C., Sullivan, B.W., Trivedi, P., Vera, A., Williams, M.A., Moreno, J.L., Delgado-Baquerizo, M., (2019):
  Global ecological predictors of the soil priming effect
  Nat. Commun. 10 , art. 3481
  full text (doi)
• Bastida, F., Jehmlich, N., Martínez-Navarro, J., Bayona, V., García, C., Moreno, J.L., (2019):
  The effects of struvite and sewage sludge on plant yield and the microbial community of a semiarid Mediterranean soil
  Geoderma 337 , 1051 - 1057
  full text (doi)
• Bastida, F., López-Mondéjar, R., Baldrian, P., Andrés-Abellán, M., Jehmlich, N., Torres, I.F., García, C., López-Serrano, F.R., (2019):
  When drought meets forest management: Effects on the soil microbial community of a Holm oak forest ecosystem
  Sci. Total Environ. 662 , 276 - 286
  full text (doi)
• Buettner, C., von Bergen, M., Jehmlich, N., Noll, M., (2019):
  Pseudomonas spp. are key players in agricultural biogas substrate degradation
  Sci. Rep. 9 , 12871
  full text (doi)
• Geiger, R.A., Junghare, M., Mergelsberg, M., Ebenau‐Jehle, C., Jesenofsky, V.J., Jehmlich, N., von Bergen, M., Schink, B., Boll, M., (2019):
  Enzymes involved in phthalate degradation in sulphate‐reducing bacteria
  Environ. Microbiol. 21 (10), 3601 - 3612
  full text (doi)
• Haange, S.-B., Jehmlich, N., Hoffmann, M., Weber, K., Lehmann, J., von Bergen, M., Slanina, J., (2019):
  Disease development is accompanied by changes in bacterial protein abundance and functions in a refined model of dextran sulfate sodium (DSS)-induced colitis
  J. Proteome Res. 18 (4), 1774 - 1786
  full text (doi)
• Haange, S.-B., Jehmlich, N., Jacobi, T., von Bergen, M., (2019):
  Chancen und Risiken von Metaproteomik in der Mikrobiomforschung. Opportunities and pitfalls of metaproteomics in microbiome research
  Adipositas - Ursachen, Folgeerkrankungen, Therapie 13 (4), 205 - 213
  full text (doi)
• Ke, X., Walker, A., Haange, S.-B., Lagkouvardos, I., Liu, Y., Schmitt-Kopplin, P., von Bergen, M., Jehmlich, N., He, X., Clavel, T., Cheung, P.C.K., (2019):
  Synbiotic-driven improvement of metabolic disturbances is associated with changes in the gut microbiome in diet-induced obese mice
  Mol. Metab. 22 , 96 - 109
  full text (doi)
• Reina, R., Kellner, H., Hess, J., Jehmlich, N., García-Romera, I., Aranda, E., Hofrichter, M., Liers, C., (2019):
  Genome and secretome of Chondrostereum purpureum correspond to saprotrophic and phytopathogenic life styles
  PLOS One 14 (3), e0212769
  full text (doi)
• Schäpe, S.S., Krause, J.L., Engelmann, B., Fritz-Wallace, K., Schattenberg, F., Liu, Z., Müller, S., Jehmlich, N., Rolle-Kampczyk, U., Herberth, G., von Bergen, M., (2019):
  The simplified human intestinal microbiota (SIHUMIx) shows high structural and functional resistance against changing transit times in in vitro bioreactors
  Microorganisms 7 (12), art. 641
  full text (doi)
• Starke, R., Jehmlich, N., Alfaro, T., Dohnalkova, A., Capek, P., Bell, S.L., Hofmockel, K.S., (2019):
  Incomplete cell disruption of resistant microbes
  Sci. Rep. 9 , art. 5618
  full text (doi)
• Starke, R., Jehmlich, N., Bastida, F., (2019):
  Using proteins to study how microbes contribute to soil ecosystem services: The current state and future perspectives of soil metaproteomics
  J. Proteomics 198 , 50 - 58
  full text (doi)
• Taubert, M., Grob, C., Crombie, A., Howat, A.M., Burns, O.J., Weber, M., Lott, C., Kaster, A.-K., Vollmers, J., Jehmlich, N., von Bergen, M., Chen, Y., Murrell, J.C., (2019):
  Communal metabolism by Methylococcaceae and Methylophilaceae is driving rapid aerobic methane oxidation in sediments of a shallow seep near Elba, Italy
  Environ. Microbiol. 21 (10), 3780 - 3795
  full text (doi)
• Türkowsky, D., Lohmann, P., Mühlenbrink, M., Schubert, T., Adrian, L., Goris, T., Jehmlich, N., von Bergen, M., (2019):
  Thermal proteome profiling allows quantitative assessment of interactions between tetrachloroethene reductive dehalogenase and trichloroethene
  J. Proteomics 192 , 10 - 17
  full text (doi)
• Tveit, A.T., Hestnes, A.G., Robinson, S.L., Schintlmeister, A., Dedysh, S.N., Jehmlich, N., von Bergen, M., Herbold, C., Wagner, M., Richter, A., Svenning, M.M., (2019):
  Widespread soil bacterium that oxidizes atmospheric methane
  Proc. Natl. Acad. Sci. U.S.A. 116 (17), 8515 - 8524
  full text (doi)

2018 (14)

• Bastida, F., Crowther, T.W., Prieto, I., Routh, D., García, C., Jehmlich, N., (2018):
  Climate shapes the protein abundance of dominant soil bacteria
  Sci. Total Environ. 640–641 , 18 - 21
  full text (doi)
• Bastida, F., Jehmlich, N., Torres, I.F., García, C., (2018):
  The extracellular metaproteome of soils under semiarid climate: A methodological comparison of extraction buffers
  Sci. Total Environ. 619–620 , 707 - 711
  full text (doi)
• Becher, E., Heese, A., Claußen, L., Eisen, S., Jehmlich, N., Rohwerder, T., Purswani, J., (2018):
  Active site alanine preceding catalytic cysteine determines unique substrate specificity in bacterial CoA‐acylating prenal dehydrogenase
  FEBS Lett. 592 (7), 1150 - 1160
  full text (doi)
• Cerdó, T., Ruiz, A., Acuña, I., Jáuregui, R., Jehmlich, N., Haange, S.-B., von Bergen, M., Suárez, A., Campoy, C., (2018):
  Gut microbial functional maturation and succession during human early life
  Environ. Microbiol. 20 (6), 2160 - 2177
  full text (doi)
• Chupani, L., Niksirat, H., Lünsmann, V., Haange, S.-B., von Bergen, M., Jehmlich, N., Zuskova, E., (2018):
  Insight into the modulation of intestinal proteome of juvenile common carp (Cyprinus carpio L.) after dietary exposure to ZnO nanoparticles
  Sci. Total Environ. 613-614 , 62 - 71
  full text (doi)
• Deutsch, E.W., Perez-Riverol, Y., Chalkley, R.J., Wilhelm, M., Tate, S., Sachsenberg, T., Walzer, M., Käll, L., Delanghe, B., Böcker, S., Schymanski, E.L., Wilmes, P., Dorfer, V., Kuster, B., Volders, P.-J., Jehmlich, N., Vissers, J.P.C., Wolan, D.W., Wang, A.Y., Mendoza, L., Shofstahl, J., Dowsey, A.W., Griss, J., Salek, R.M., Neumann, S., Binz, P.-A., Lam, H., Vizcaíno, J.A., Bandeira, N., Röst, H., (2018):
  Expanding the use of spectral libraries in proteomics
  J. Proteome Res. 17 (12), 4051 - 4060
  full text (doi)
• Herbst, F.-A., Jehmlich, N., von Bergen, M., Schmidt, F., (2018):
  Sulfur-³⁴S and ³⁶S stable isotope labeling of amino acids for quantification (SULAQ_34/36) of proteome analyses
  In: Becher, D., (ed.)
  Microbial proteomics : methods and protocols
  Methods in Molecular Biology 1841
  Humana Press, p. 163 - 174
  full text (doi)
• Lechner, U., Türkowsky, D., Dinh, T.T.H., Al-Fathi, H., Schwoch, S., Franke, S., Gerlach, M.-S., Koch, M., von Bergen, M., Jehmlich, N., Dang, T.C.H., (2018):
  Desulfitobacterium contributes to the microbial transformation of 2,4,5‐T by methanogenic enrichment cultures from a Vietnamese active landfill
  Microb. Biotechnol. 11 (6), 1137 - 1156
  full text (doi)
• Malik, A.A., Puissant, J., Buckeridge, K.M., Goodall, T., Jehmlich, N., Chowdhury, S., Gweon, H.S., Peyton, J.M., Mason, K.E., van Agtmaal, M., Blaud, A., Clark, I.A., Whitaker, J., Pywell, R.F., Ostle, N., Gleixner, G., Griffiths, R.I., (2018):
  Land use driven change in soil pH affects microbial carbon cycling processes
  Nat. Commun. 9 , art. 3591
  full text (doi)
• Taubert, M., Stöckel, S., Geesink, P., Girnus, S., Jehmlich, N., von Bergen, M., Rösch, P., Popp, J., Küsel, K., (2018):
  Tracking active groundwater microbes with D₂O labelling to understand their ecosystem function
  Environ. Microbiol. 20 (1), 369 - 384
  full text (doi)
• Türkowsky, D., Esken, J., Goris, T., Schubert, T., Diekert, G., Jehmlich, N., von Bergen, M., (2018):
  A retentive memory of tetrachloroethene respiration in Sulfurospirillum halorespirans - involved proteins and a possible link to acetylation of a two-component regulatory system
  J. Proteomics 181 , 36 - 46
  full text (doi)
• Türkowsky, D., Jehmlich, N., Diekert, G., Adrian, L., von Bergen, M., Goris, T., (2018):
  An integrative overview of genomic, transcriptomic and proteomic analyses in organohalide respiration research
  FEMS Microbiol. Ecol. 94 (3), fiy013
  full text (doi)
• Vásquez-Piñeros, M.A., Martínez-Lavanchy, P.M., Jehmlich, N., Pieper, D.H., Rincón, C.A., Harms, H., Junca, H., Heipieper, H.J., (2018):
  Delftia sp. LCW, a strain isolated from a constructed wetland shows novel properties for dimethylphenol isomers degradation
  BMC Microbiol. 18 , art. 108
  full text (doi)
• Wintsche, B., Jehmlich, N., Popp, D., Harms, H., Kleinsteuber, S., (2018):
  Metabolic adaptation of methanogens in anaerobic digesters upon trace element limitation
  Front. Microbiol. 9 , art. 405
  full text (doi)

2017 (13)

• Bastida, F., Torres, I.F., Andrés-Abellán, M., Baldrian, P., López-Mondéjar, R., Větrovský, T., Richnow, H.H., Starke, R., Ondoño, S., García, C., López-Serrano, F., Jehmlich, N., (2017):
  Differential sensitivity of total and active soil microbial communities to drought and forest management
  Glob. Change Biol. 23 (10), 4185 - 4203
  full text (doi)
• Chupani, L., Zusková, É., Niksirat, H., Panáček, A., Lünsmann, V., Haange, S.-B., von Bergen, M., Jehmlich, N., (2017):
  Effects of chronic dietary exposure of zinc oxide nanoparticles on the serum protein profile of juvenile common carp (Cyprinus carpio L.)
  Sci. Total Environ. 579 , 1504 - 1511
  full text (doi)
• Ebenau-Jehle, C., Mergelsberg, M., Fischer, S., Brüls, T., Jehmlich, N., von Bergen, M., Boll, M., (2017):
  An unusual strategy for the anoxic biodegradation of phthalate
  ISME J. 11 (1), 224 - 236
  full text (doi)
• Herbold, C.W., Lehtovirta-Morley, L.E., Jung, M.-Y., Jehmlich, N., Hausmann, B., Han, P., Loy, A., Pester, M., Sayavedra-Soto, L.A., Rhee, S.-K., Prosser, J.I., Nicol, G.W., Wagner, M., Gubry-Rangin, C., (2017):
  Ammonia-oxidising archaea living at low pH: Insights from comparative genomics
  Environ. Microbiol. 19 , 4939 - 4952
  full text (doi)
• Kadisch, M., Julsing, M.K., Schrewe, M., Jehmlich, N., Scheer, B., von Bergen, M., Schmid, A., Bühler, B., (2017):
  Maximization of cell viability rather than biocatalyst activity improves whole-cell ω-oxyfunctionalization performance
  Biotechnol. Bioeng. 114 (4), 874 - 884
  full text (doi)
• Kiebist, J., Schmidtke, K.-U., Zimmermann, J., Kellner, H., Jehmlich, N., Ullrich, R., Zänder, D., Hofrichter, M., Scheibner, K., (2017):
  A peroxygenase from Chaetomium globosum catalyzes the selective oxygenation of testosterone
  ChemBioChem 18 (6), 563 - 569
  full text (doi)
• Oberbach, A., Haange, S.-B., Schlichting, N., Heinrich, M., Lehmann, S., Till, H., Hugenholtz, F., Kullnick, Y., Smidt, H., Frank, K., Seifert, J., Jehmlich, N., von Bergen, M., (2017):
  Metabolic in vivo labeling highlights differences of metabolically active microbes from the mucosal gastrointestinal microbiome between high-fat and normal chow diet
  J. Proteome Res. 16 (4), 1593 - 1604
  full text (doi)
• Pinaud, L., Ferrari, M.L., Friedman, R., Jehmlich, N., von Bergen, M., Phalipon, A., Sansonetti, P.J., Campbell-Valois, F.-X., (2017):
  Identification of novel substrates of Shigella T3SA through analysis of its virulence plasmid-encoded secretome
  PLOS One 12 (10), e0186920
  full text (doi)
• Starke, R., Bastida, F., Abadía, J., García, C., Nicolás, E., Jehmlich, N., (2017):
  Ecological and functional adaptations to water management in a semiarid agroecosystem: a soil metaproteomics approach
  Sci. Rep. 7 , art. 10221
  full text (doi)
• Starke, R., Müller, M., Gaspar, M., Marz, M., Küsel, K., Totsche, K.U., von Bergen, M., Jehmlich, N., (2017):
  Candidate Brocadiales dominates C, N and S cycling in anoxic groundwater of a pristine limestone-fracture aquifer
  J. Proteomics 152 , 153 - 160
  full text (doi)
• Taubert, M., Grob, C., Howar, A.M., Burns, O.J., Pratscher, J., Jehmlich, N., von Bergen, M., Richnow, H.H., Chen, Y., Murrell, J.C., (2017):
  Methylamine as a nitrogen source for microorganisms from a coastal marine environment
  Environ. Microbiol. 19 (6), 2246 - 2257
  full text (doi)
• Teumer, A., Qi, Q., Nethander, M., Aschard, H., Bandinelli, S., Beekman, M., Berndt, S.I., Bidlingmaier, M., Broer, L., Cappola, A., Ceda, G.P., Chanock, S., Chen, M.-H., Chen, T.C., Chen, Y.-D.I., Chung, J., Del Greco Miglianico, F., Eriksson, J., Ferrucci, L., Friedrich, N., Gnewuch, C., Goodarzi, M.O., Grarup, N., Guo, T., Hammer, E., Hayes, R.B., Hicks, A.A., Hofman, A., Houwing-Duistermaat, J.J., Hu, F., Hunter, D.J., Husemoen, L.L., Isaacs, A., Jacobs, K.B., Janssen, J.A.M.J.L., Jansson, J.-O., Jehmlich, N., Johnson, S., Juul, A., Karlsson, M., Kilpelainen, T.O., Kovacs, P., Kraft, P., Li, C., Linneberg, A., Liu, Y., Loos, R.J.F., Lorentzon, M., Lu, Y., Maggio, M., Magi, R., Meigs, J., Mellström, D., Nauck, M., Newman, A.B., Pollak, M.N., Pramstaller, P.P., Prokopenko, I., Psaty, B.M., Reincke, M., Rimm, R.B., Rotter, J.I., Saint Pierre, A., Schurmann, C., Seshadri, S., Sjögren, K., Slagboom, P.E., Strickler, H.D., Stumvoll, M., Suh, Y., Sun, Q., Zhang, C., Svensson, J., Tanaka, T., Tare, A., Tönjes, A., Uh, H.-W., van Duijn, C., van Heemst, D., Vandenput, L., Vasan, R.S., Völker, U., Willems, S.M., Ohlsson, C., Wallaschofski, H., Kaplan, R.C., (2017):
  Erratum: Genomewide meta-analysis identifies loci associated with IGF-I and IGFBP-3 levels with impact on age-related traits (vol 15, pg 811, 2016)
  Aging Cell 16 (4), 898
  full text (doi)
• Warnke, M., Jacoby, C., Jung, T., Agne, M., Mergelsberg, M., Starke, R., Jehmlich, N., von Bergen, M., Richnow, H.-H., Brüls, T., Boll, M., (2017):
  A patchwork pathway for oxygenase-independent degradation of side chain containing steroids
  Environ. Microbiol. 19 (11), 4684 - 4699
  full text (doi)

2016 (20)

• Bastida, F., Jehmlich, N., (2016):
  It's all about functionality: How can metaproteomics help us to discuss the attributes of ecological relevance in soil?
  J. Proteomics 144 , 159 - 161
  full text (doi)
• Bastida, F., Jehmlich, N., Lima, K., Morris, B.E.L., Richnow, H.H., Hernández, T., von Bergen, M., García, C., (2016):
  The ecological and physiological responses of the microbial community from a semiarid soil to hydrocarbon contamination and its bioremediation using compost amendment
  J. Proteomics 135 , 162 - 169
  full text (doi)
• Bastida, F., Torres, I.F., Moreno, J.L., Baldrian, P., Ondoño, S., Ruiz-Navarro, A., Hernández, T., Richnow, H.H., Starke, R., García, C., Jehmlich, N., (2016):
  The active microbial diversity drives ecosystem multifunctionality and is physiologically related to carbon availability in Mediterranean semi-arid soils
  Mol. Ecol. 25 (18), 4660 - 4673
  full text (doi)
• Dey, P., Gola, D., Mishra, A., Malik, A., Kumar, P., Singh, D.K., Patel, N., von Bergen, M., Jehmlich, N., (2016):
  Comparative performance evaluation of multi-metal resistant fungal strains for simultaneous removal of multiple hazardous metals
  J. Hazard. Mater. 318 , 679 - 685
  full text (doi)
• Goris, T., Schiffmann, C.L., Gadkari, J., Adrian, L., von Bergen, M., Diekert, G., Jehmlich, N., (2016):
  Proteomic data set of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates
  Data in Brief 8 , 637 - 642
  full text (doi)
• Haange, S.-B., Jehmlich, N., (2016):
  Proteomic interrogation of the gut microbiota: potential clinical impact
  Expert Rev. Proteomics 13 (6), 535 - 537
  full text (doi)
• Herbst, F.-A., Lünsmann, V., Kjeldal, H., Jehmlich, N., Tholey, A., von Bergen, M., Nielsen, J.L., Hettich, R.L., Seifert, J., Nielsen, P.H., (2016):
  Enhancing metaproteomics—The value of models and defined environmental microbial systems
  Proteomics 16 (5), 783 - 798
  full text (doi)
• Jehmlich, N., Vogt, C., Lünsmann, V., Richnow, H.H., von Bergen, M., (2016):
  Protein-SIP in environmental studies
  Curr. Opin. Biotechnol. 41 , 26 - 33
  full text (doi)
• Lünsmann, V., Kappelmeyer, U., Benndorf, R., Martínez-Lavanchy, P.M., Taubert, A., Adrian, L., Duarte, M., Pieper, D.H., von Bergen, M., Müller, J.A., Heipieper, H.J., Jehmlich, N., (2016):
  In situ protein-SIP highlights Burkholderiaceae as key players degrading toluene by para ring hydroxylation in a constructed wetland model
  Environ. Microbiol. 18 (4), 1176 - 1186
  full text (doi)
• Lünsmann, V., Kappelmeyer, U., Taubert, A., Nijenhuis, I., von Bergen, M., Heipieper, H.J., Müller, J.A., Jehmlich, N., (2016):
  Aerobic toluene degraders in the rhizosphere of a constructed wetland model show diurnal polyhydroxyalkanoate metabolism
  Appl. Environ. Microb. 82 (14), 4126 - 4132
  full text (doi)
• Malik, A.A., Chowdhury, S., Schlager, V., Oliver, A., Puissant, J., Vazquez, P.G.M., Jehmlich, N., von Bergen, M., Griffiths, R.I., Gleixner, G., (2016):
  Soil fungal:bacterial ratios are linked to altered carbon cycling
  Front. Microbiol. 7 , art. 1247
  full text (doi)
• Men, Y., Han, P., Helbling, D.E., Jehmlich, N., Herbold, C., Gulde, R., Onnis-Hayden, A., Gu, A.Z., Johnson, D.R., Wagner, M., Fenner, K., (2016):
  Biotransformation of two pharmaceuticals by the ammonia-oxidizing archaeon Nitrososphaera gargensis
  Environ. Sci. Technol. 50 (9), 4682 - 4692
  full text (doi)
• Oberbach, A., Adams, V., Schlichting, N., Heinrich, M., Kullnick, Y., Lehmann, S., Feder, S., Correia, J.C., Mohr, F.-W., Völker, U., Jehmlich, N., (2016):
  Proteome profiles of HDL particles of patients with chronic heart failure are associated with immune response and also include bacteria proteins
  Clin. Chim. Acta 453 , 114 - 122
  full text (doi)
• Schaubeck, M., Clavel, T., Calasan, J., Lagkouvardos, I., Haange, S.B., Jehmlich, N., Basic, M., Dupont, A., Hornef, M., von Bergen, M., Bleich, A., Haller, D., (2016):
  Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence
  Gut 65 , 225 - 237
  full text (doi)
• Schiffmann, C.L., Otto, W., Hansen, R., Nielsen, P.H., Adrian, L., Seifert, J., von Bergen, M., Jehmlich, N., (2016):
  Proteomic dataset of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor
  Data in Brief 7 , 253 - 256
  full text (doi)
• Starke, R., Keller, A., Jehmlich, N., Vogt, C., Richnow, H.H., Kleinsteuber, S., von Bergen, M., Seifert, J., (2016):
  Pulsed ¹³C₂-acetate protein-SIP unveils Epsilonproteobacteria as dominant acetate utilizers in a sulfate-reducing microbial community mineralizing benzene
  Microb. Ecol. 71 (4), 901 - 911
  full text (doi)
• Starke, R., Kermer, R., Ullmann-Zeunert, L., Baldwin, I.T., Seifert, J., Bastida, F., von Bergen, M., Jehmlich, N., (2016):
  Bacteria dominate the short-term assimilation of plant-derived N in soil
  Soil Biol. Biochem. 96 , 30 - 38
  full text (doi)
• Teumer, A., Qi, Q., Nethander, M., Aschard, H., Bandinelli, S., Beekman, M., Berndt, S.I., Bidlingmaier, M., Broer, L., Cappola, A., Ceda, G.P., Chanock, S., Chen, M.-H., Chen, T.C., Chen, Y.-D.I., Chung, J., Del Greco Miglianico, F., Eriksson, J., Ferrucci, L., Friedrich, N., Gnewuch, C., Goodarzi, M.O., Grarup, N., Guo, T., Hammer, E., Hayes, R.B., Hicks, A.A., Hofman, A., Houwing-Duistermaat, J.J., Hu, F., Hunter, D.J., Husemoen, L.L., Isaacs, A., Jacobs, K.B., Janssen, J.A.M.J.L., Jansson, J.-O., Jehmlich, N., Johnson, S., Juul, A., Karlsson, M., Kilpelainen, T.O., Kovacs, P., Kraft, P., Li, C., Linneberg, A., Liu, Y., Loos, R.J.F., Lorentzon, M., Lu, Y., Maggio, M., Magi, R., Meigs, J., Mellström, D., Nauck, M., Newman, A.B., Pollak, M.N., Pramstaller, P.P., Prokopenko, I., Psaty, B.M., Reincke, M., Rimm, R.B., Rotter, J.I., Saint Pierre, A., Schurmann, C., Seshadri, S., Sjögren, K., Slagboom, P.E., Strickler, H.D., Stumvoll, M., Suh, Y., Sun, Q., Zhang, C., Svensson, J., Tanaka, T., Tare, A., Tönjes, A., Uh, H.-W., van Duijn, C., van Heemst, D., Vandenput, L., Vasan, R.S., Völker, U., Willems, S.M., Ohlsson, C., Wallaschofski, H., Kaplan, R.C., (2016):
  Genomewide meta‐analysis identifies loci associated with IGF‐I and IGFBP‐3 levels with impact on age‐related traits
  Aging Cell 15 (5), 811 - 824
  full text (doi)
• Tiedt, O., Mergelsberg, M., Boll, K., Müller, M., Adrian, L., Jehmlich, N., von Bergen, M., Boll, M., (2016):
  ATP-dependent C–F bond cleavage allows the complete degradation of 4-fluoroaromatics without oxygen
  mBio 7 (4), e00990-16
  full text (doi)
• Warnke, M., Jung, T., Dermer, J., Hipp, K., Jehmlich, N., von Bergen, M., Ferlaino, S., Fries, A., Müller, M., Boll, M., (2016):
  25-hydroxyvitamin D₃ synthesis by enzymatic steroid side-chain hydroxylation with water
  Angew. Chem.-Int. Edit. 55 (5), 1881 - 1884
  full text (doi)

2015 (11)

• Bastida, F., García, C., von Bergen, M., Moreno, J.L., Richnow, H.H., Jehmlich, N., (2015):
  Deforestation fosters bacterial diversity and the cyanobacterial community responsible for carbon fixation processes under semiarid climate: a metaproteomics study
  Appl. Soil Ecol. 93 , 65 - 67
  full text (doi)
• Daims, H., Lebedeva, E.V., Pjevac, P., Han, P., Herbold, C., Albertsen, M., Jehmlich, N., Palatinszky, M., Vierheilig, J., Bulaev, A., Kirkegaard, R.H., von Bergen, M., Rattei, T., Bendinger, B., Nielsen, P.H., Wagner, M., (2015):
  Complete nitrification by Nitrospira bacteria
  Nature 528 (7583), 504 - 509
  full text (doi)
• Goris, T., Schiffmann, C.L., Gadkari, J., Schubert, T., Seifert, J., Jehmlich, N., von Bergen, M., Diekert, G., (2015):
  Proteomics of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates
  Sci. Rep. 5 , art. 13794
  full text (doi)
• Grob, C., Taubert, M., Howat, A.M., Burns, O.J., Dixon, J.L., Richnow, H.H., Jehmlich, N., von Bergen, M., Chen, Y., Murrell, J.C., (2015):
  Combining metagenomics with metaproteomics and stable isotope probing reveals metabolic pathways used by a naturally occurring marine methylotroph
  Environ. Microbiol. 17 (10), 4007 - 4018
  full text (doi)
• Hartwig, S., Thomas, C., Krumova, N., Quitzke, V., Türkowsky, D., Jehmlich, N., Adrian, L., Sawers, R.G., (2015):
  Heterologous complementation studies in Escherichia coli with the Hyp accessory protein machinery from Chloroflexi provide insight into [NiFe]-hydrogenase large subunit recognition by the HypC protein family
  Microbiology-(UK) 161 (11), 2204 - 2219
  full text (doi)
• Kümmel, S., Herbst, F.-A., Bahr, A., Duarte, M., Pieper, D.H., Jehmlich, N., Seifert, J., von Bergen, M., Bombach, P., Richnow, H.H., Vogt, C., (2015):
  Anaerobic naphthalene degradation by sulfate-reducing Desulfobacteraceae from various anoxic aquifers
  FEMS Microbiol. Ecol. 91 (3), fiv006
  full text (doi)
• Palatinszky, M., Herbold, C., Jehmlich, N., Pogoda, M., Han, P., von Bergen, M., Lagkouvardos, I., Karst, S.M., Galushko, A., Koch, H., Berry, D., Daims, H., Wagner, M., (2015):
  Cyanate as an energy source for nitrifiers
  Nature 524 (7563), 105 - 108
  full text (doi)
• Pöritz, M., Schiffmann, C.L., Hause, G., Heinemann, U., Seifert, J., Jehmlich, N., von Bergen, M., Nijenhuis, I., Lechner, U., (2015):
  Dehalococcoides mccartyi strain DCMB5 respires a broad spectrum of chlorinated aromatic compounds
  Appl. Environ. Microb. 81 (2), 587 - 596
  full text (doi)
• Sachsenberg, T., Herbst, F.-A., Taubert, M., Kermer, R., Jehmlich, N., von Bergen, M., Seifert, J., Kohlbacher, O., (2015):
  MetaProSIP: Automated inference of stable isotope incorporation rates in proteins for functional metaproteomics
  J. Proteome Res. 14 (2), 619 - 627
  full text (doi)
• Schaubeck, M., Clavel, T., Lagkouvardos, M., Calasan, J., Haange, S.B., Jehmlich, N., von Bergen, M., Basic, M., Bleich, A., Haller, D., (2015):
  Transmissive Crohn's disease-like ileitis is caused by functional dysbiosis in the intestinal microbiota independent of inflammation-driven Paneth cell failure
  J. Crohns Colitis 9 (Suppl. 1), S1 - S1
  full text (doi)
• Seyhan, D., Jehmlich, N., von Bergen, M., Fersch, J., Rother, M., (2015):
  Selenocysteine-independent suppression of UGA codons in the archaeon Methanococcus maripaludis
  Biochim. Biophys. Acta-Gen. Subj. 1850 , 2385 - 2392
  full text (doi)