2025 (6)

• Aldehoff, A.S., Türkowsky, D., Lohmann, P., Homsi, M.N., Rolle-Kampczyk, U., Ueberham, E., Lehmann, J., von Bergen, M., Jehmlich, N., Haange, S.-B. (2025):
  Revealing novel protein interaction partners of glyphosate in Escherichia coli
  Environ. Int. 195 , art. 109243 10.1016/j.envint.2024.109243
• Castañeda-Monsalve, V., Haange, S.-B., Fröhlich, L.-F., Fu, Q., Rolle-Kampczyk, U., von Bergen, M., Jehmlich, N. (2025):
  Food colorant brilliant blue causes persistent functional and structural changes in an in vitro simplified microbiota model system
  ISME Commun. 5 (1), ycaf050 10.1093/ismeco/ycaf050
• Ghosh, D., Shi, Y., Zimmermann, I.M., Holzhauser, K., von Bergen, M., Kaster, A.-K., Spielvogel, S., Dippold, M.A., Müller, J.A., Jehmlich, N. (2025):
  Cover crop root channels promote bacterial adaptation to drought in the maize rhizosphere
  bioRxiv 10.1101/2025.05.05.651044
• Reddy, L.R., Egerter, C., Jehmlich, N., Fiskal, A., Helmholz, L., Castronovo, S., Schweyen, P., Wulf, S.-E., Ternes, T., Wick, A., Meier, J. (2025):
  New insights in the metabolic functions of freshwater sulfate reducing communities during steel corrosion by biophysicochemical, 16S rRNA gene sequence and metaproteomic analysis
  Int. Biodeterior. Biodegrad. 198 , art. 105995 10.1016/j.ibiod.2024.105995
• Tanca, A., Schallert, K., Grenga, L., Peters, S.L., Abbondio, M., De Diego, L., Deledda, M.A., Haange, S.-B., Miotello, G., Sáenz, J.S., Wolf, M., Bastida, F., Devos, S., Hernandez-Raquet, G., Seifert, J., Wilmes, P., Van Den Bossche, T., Kunath, B.J., Heyer, R., Jehmlich, N., Benndorf, D., Hettich, R.L., Armengaud, J., Uzzau, S. (2025):
  Critical Assessment of MetaProteome Investigation 2 (CAMPI-2): Multi-laboratory assessment of sample processing methods to stabilize fecal microbiome for functional analysis
  bioRxiv 10.1101/2025.01.31.635836
• Van Den Bossche, T., Armengaud, J., Benndorf, D., Blakeley-Ruiz, J.A., Brauer, M., Cheng, K., Creskey, M., Figeys, D., Grenga, L., Griffin, T.J., Henry, C., Hettich, R.L., Holstein, T., Jagtap, P.D., Jehmlich, N., Kim, J., Kleiner, M., Kunath, B.J., Malliet, X., Martens, L., Mehta, S., Mesuere, B., Ning, Z., Tanca, A., Uzzau, S., Verschaffelt, P., Wang, J., Wilmes, P., Zhang, X., Zhang, X., Li, L., The Metaproteomics Initiative, (2025):
  The microbiologist's guide to metaproteomics
  iMeta 10.1002/imt2.70031

2024 (13)

• Barquero, M.B., García-Díaz, C., Dobbler, P.T., Jehmlich, N., Moreno, J.L., López-Mondéjar, R., Bastida, F. (2024):
  Contrasting fertilization and phenological stages shape microbial-mediated phosphorus cycling in a maize agroecosystem
  Sci. Total Environ. 951 , art. 175571 10.1016/j.scitotenv.2024.175571
• Castañeda-Monsalve, V., Fröhlich, L.-F., Haange, S.-B., Homsi, M.N., Rolle-Kampczyk, U., Fu, Q., von Bergen, M., Jehmlich, N. (2024):
  High-throughput screening of the effects of 90 xenobiotics on the simplified human gut microbiota model (SIHUMIx): A metaproteomic and metabolomic study
  Front. Microbiol. 15 , art. 1349367 10.3389/fmicb.2024.1349367
• Cole, L., Goodall, T., Jehmlich, N., Griffiths, R.I., Gleixner, G., Gubry-Rangin, C., Malik, A.A. (2024):
  Land use effects on soil microbiome composition and traits with consequences for its ecosystem carbon use efficiency
  bioRxiv 10.1101/2024.04.05.588235
• Dey, P., Malik, A., Singh, D.K., Haange, S.-B., von Bergen, M., Jehmlich, N. (2024):
  Unveiling fungal strategies: Mycoremediation in multi-metal pesticide environments using proteomics
  Sci. Rep. 14 , art. 23171 10.1038/s41598-024-74517-y
• Fischer, F., Pierzchalski, A., Riesbeck, S., Aldehoff, A.S., Castañeda-Monsalve, V., Haange, S.-B., von Bergen, M., Rolle-Kampczyk, U.E., Jehmlich, N., Zenclussen, A.C., Herberth, G. (2024):
  An in vitro model system for testing chemical effects on microbiome-immune interactions - examples with BPX and PFAS mixtures
  Front. Immunol. 15 , art. 1298971 10.3389/fimmu.2024.1298971
• Funkner, K., Poehlein, A., Jehmlich, N., Egelkamp, R., Daniel, R., von Bergen, M., Rother, M. (2024):
  Proteomic and transcriptomic analysis of selenium utilization in Methanococcus maripaludis
  mSystems 9 (5), e01338-23 10.1128/msystems.01338-23
• Ghosh, D., Shi, Y., Zimmermann, I.M., Stürzebecher, T., Holzhauser, K., von Bergen, M., Kaster, A.-K., Spielvogel, S., Dippold, M.A., Müller, J.A., Jehmlich, N. (2024):
  Cover crop monocultures and mixtures enhance bacterial abundance and functionality in the maize root zone
  ISME Commun. 24 (1), ycae132 10.1093/ismeco/ycae132
• Haange, S.-B., Riesbeck, S., Aldehoff, A.S., Engelmann, B., Jensen Pedersen, K., Castañeda-Monsalve, V., Rolle-Kampczyk, U., von Bergen, M., Jehmlich, N. (2024):
  Chemical mixture effects on the simplified human intestinal microbiota: Assessing xenobiotics at environmentally realistic concentrations
  J. Hazard. Mater. 474 , art. 134683 10.1016/j.jhazmat.2024.134683
• Jehmlich, N. (2024):
  Preface: The 2nd International Electronic Conference on Microbiology
  Biol. Life Sci. Forum 31 (1), art. 35 10.3390/ECM2023-00035
• Kipping, L., Jehmlich, N., Moll, J., Noll, M., Gossner, M.M., Van Den Bossche, T., Edelmann, P., Borken, W., Hofrichter, M., Kellner, H. (2024):
  Enzymatic machinery of wood-inhabiting fungi that degrade temperate tree species
  ISME J. 18 (1), wrae050 10.1093/ismejo/wrae050
• Krause, J.L., Engelmann, B., Schaepe, S.S., Rolle-Kampczyk, U., Jehmlich, N., Chang, H.-D., Slanina, U., Hoffmann, M., Lehmann, J., Zenclussen, A.C., Herberth, G., von Bergen, M., Haange, S.-B. (2024):
  DSS treatment does not affect murine colonic microbiota in absence of the host
  Gut Microbes 16 (1), art. 2297831 10.1080/19490976.2023.2297831
• Moll, J., Bässler, C., Buscot, F., Hoppe, B., Jehmlich, N., Kellner, H., Muszynski, S., Noll, M. (2024):
  Extrinsic rather than intrinsic factors determine microbial colonization of deadwood
  Soil Biol. Biochem. 199 , art. 109608 10.1016/j.soilbio.2024.109608
• Palatinszky, M., Herbold, C.W., Sedlacek, C.J., Pühringer, D., Kitzinger, K., Giguere, A.T., Wasmund, K., Nielsen, P.H., Dueholm, M.K.D., Jehmlich, N., Gruseck, R., Legin, A., Kostan, J., Krasnici, N., Schreiner, C., Palmetzhofer, J., Hofmann, T., Zumstein, M., Djinović-Carugo, K., Daims, H., Wagner, M. (2024):
  Growth of complete ammonia oxidizers on guanidine
  Nature 633 (8030), 646 - 653 10.1038/s41586-024-07832-z

2023 (15)

• Auer, E., Lazuka, A., Huguenin-Bizot, B., Jehmlich, N., Déjean, S., Lombard, V., Henrissat, B., O'Donohue, M., Hernandez-Raquet, G. (2023):
  Horizontal metaproteomics and CAZymes analysis of lignocellulolytic microbial consortia selectively enriched from cow rumen and termite gut
  ISME Commun. 3 (1), art. 134 10.1038/s43705-023-00339-0
• Cerdó, T., Ruiz-Rodríguez, A., Acuña, I., Torres-Espínola, F.J., Menchén-Márquez, S., Gámiz, F., Gallo, M., Jehmlich, N., Haange, S.-B., von Bergen, M., Campoy, C., Suárez, A. (2023):
  Infant gut microbiota contributes to cognitive performance in mice
  Cell Host Microbe 31 (12), 1974 - 1988.e4 10.1016/j.chom.2023.11.004
• Engelberts, J.P., Robbins, S.J., Herbold, C.W., Moeller, F.U., Jehmlich, N., Laffy, P.W., Wagner, M., Webster, N.S. (2023):
  Metabolic reconstruction of the near complete microbiome of the model sponge Ianthella basta
  Environ. Microbiol. 25 (3), 646 - 660 10.1111/1462-2920.16302
• Ghosh, D., Müller, J.A., Jehmlich, N. (2023):
  qPCR raw datasets on the assessments of cover crop monocultures and mixtures improving the rhizosphere bacterial abundance and functionality through rerooting (1.0) [Data set]
  Zenodo 10.5281/zenodo.10061192
• Heinze, B.M., Küsel, K., Jehmlich, N., von Bergen, M., Taubert, M. (2023):
  Metabolic versatility enables sulfur-oxidizers to dominate primary production in groundwater
  Water Res. 244 , art. 120426 10.1016/j.watres.2023.120426
• Jehmlich, N. (2023):
  Microbiomes: A new open section in Microorganisms. Editorial
  Microorganisms 11 (12), art. 2889 10.3390/microorganisms11122889
• Khan, N., Muge, E., Mulaa, F.J., Wamalwa, B., von Bergen, M., Jehmlich, N., Wick, L.Y. (2023):
  Mycelial nutrient transfer promotes bacterial co-metabolic organochlorine pesticide degradation in nutrient-deprived environments
  ISME J. 17 (4), 570 - 578 10.1038/s41396-023-01371-7
• Krüger, M., Chaudhari, N., Thamdrup, B., Overholt, W.A., Bristow, L.A., Taubert, M., Küsel, K., Jehmlich, N., von Bergen, M., Herrmann, M. (2023):
  Differential contribution of nitrifying prokaryotes to groundwater nitrification
  ISME J. 17 (10), 1601 - 1611 10.1038/s41396-023-01471-4
• Meyer Cifuentes, I.E., Degenhardt, J., Neumann-Schaal, M., Jehmlich, N., Ngugi, D.K., Öztürk, B. (2023):
  Comparative biodegradation analysis of three compostable polyesters by a marine microbial community
  Appl. Environ. Microb. 89 (12), e01060-23 10.1128/aem.01060-23
• Ramos-Nascimento, A., Grenga, L., Haange, S.-B., Himmelmann, A., Arndt, F.S., Ly, Y.-T., Miotello, G., Pible, O., Jehmlich, N., Engelmann, B., von Bergen, M., Mulder, E., Frings-Meuthen, P., Hellweg, C.E., Jordan, J., Rolle-Kampczyk, U., Armengaud, J., Moeller, R. (2023):
  Human gut microbiome and metabolite dynamics under simulated microgravity
  Gut Microbes 15 (2), art. 2259033 10.1080/19490976.2023.2259033
• Riva, A., Rasoulimehrabani, H., Cruz-Rubio, J.M., Schnorr, S.L., von Baeckmann, C., Inan, D., Nikolov, G., Herbold, C.W., Hausmann, B., Pjevac, P., Schintlmeister, A., Spittler, A., Palatinszky, M., Kadunic, A., Hieger, N., Del Favero, G., von Bergen, M., Jehmlich, N., Watzka, M., Lee, K.S., Wiesenbauer, J., Khadem, S., Viernstein, H., Stocker, R., Wagner, M., Kaiser, C., Richter, A., Kleitz, F., Berry, D. (2023):
  Identification of inulin-responsive bacteria in the gut microbiota via multi-modal activity-based sorting
  Nat. Commun. 14 , art. 8210 10.1038/s41467-023-43448-z
• Ruiz-Rodriguez, A., Acuña, I., Cerdo, T., Torres-Espinola, F.J., Menchen-Marquez, S., Gámiz, F., Gallo, M., Jehmlich, N., Haange, S.-B., von Bergen, M., Campoy, C., Suarez, A. (2023):
  Gut microbiota contributes to cognitive performance in infants
  IBRO Neurosci. Rep. 15 (Suppl. 1), S821 - S822 10.1016/j.ibneur.2023.08.1703
• Torow, N., Li, R., Hitch, T.C.A., Mingels, C., Al Bounny, S., van Best, N., Stange, E.-L., Simons, B., Maié, T., Rüttger, L., Gubbi, N.M.K.P., Abbott, D.A., Benabid, A., Gadermayr, M., Runge, S., Treichel, N., Merhof, D., Rosshart, S.P., Jehmlich, N., Hand, T.W., von Bergen, M., Heymann, F., Pabst, O., Clavel, T., Tacke, F., Lelouard, H., Gesteira Costa, I., Hornef, M.W. (2023):
  M cell maturation and cDC activation determine the onset of adaptive immune priming in the neonatal Peyer’s patch
  Immunity 56 (6), 1220 - 1238 10.1016/j.immuni.2023.04.002
• Wilmes, P., Trezzi, J.-P., Aho, V., Jäger, C., Schade, S., Janzen, A., Hickl, O., Kunath, B., Thomas, M., Schmit, K., Garcia, P., Sciortino, A., Martin-Gallausiaux, C., Halder, R., Huarte, O.U., Heurtaux, T., Heins-Marroquin, U., Gomez-Giro, G., Weidenbach, K., Delacour, L., Laczny, C., Novikova, P., Ramiro-Garcia, J., Singh, R., Andújar, B.T., Lebrun, L., Daujeumont, A., Habier, J., Dong, X., Gavotto, F., Heintz-Buschart, A., Schneider, J., Jehmlich, N., von Bergen, M., Schymanski, E., Schmitz, R., Schwamborn, J., Glaab, E., Linster, C., Kitami, T., Buttini, M., May, P., Trenkwalder, C., Oertel, W., Mollenhauer, B. (2023):
  Artefactual source of 2-hydroxypyridine
  Research Square 10.21203/rs.3.rs-1827631/v2
• Zhang, L., Toplak, M., Saleem-Batcha, R., Höing, L., Jakob, R., Jehmlich, N., von Bergen, M., Maier, T., Teufel, R. (2023):
  Bacterial dehydrogenases facilitate oxidative inactivation and bioremediation of chloramphenicol
  ChemBioChem 24 (2), e202200632 10.1002/cbic.202200632

2022 (21)

• Brede, M., Haange, S.-B., Riede, S., Engelmann, B., Jehmlich, N., Rolle-Kampczyk, U.E., Rohn, K., Von Soosten, D., von Bergen, M., Breves, G. (2022):
  Effects of different formulations of glyphosate on rumen microbial metabolism and microbial community composition in the Rumen Simulation Technique system
  Front. Microbiol. 13 , art. 873101 10.3389/fmicb.2022.873101
• Dey, P., Malik, A., Singh, D.K., Haange, S.-B., von Bergen, M., Jehmlich, N. (2022):
  Insight to the molecular mechanisms underpinning the mycoremediation of multiple metals by proteomic technique
  Front. Microbiol. 13 , art. 872576 10.3389/fmicb.2022.872576
• Fernandes, M.L.P., Bastida, F., Jehmlich, N., Martinović, T., Větrovský, T., Baldrian, P., Delgado-Baquerizo, M., Starke, R. (2022):
  Functional soil mycobiome across ecosystems
  J. Proteomics 252 , art. 104428 10.1016/j.jprot.2021.104428
• Geesink, P., Taubert, M., Jehmlich, N., von Bergen, M., Küsel, K. (2022):
  Bacterial necromass is rapidly metabolized by heterotrophic bacteria and supports multiple trophic levels of the groundwater microbiome
  Microbiol. Spectr. 10 (4), e00437 10.1128/spectrum.00437-22
• Gwak, J.-H., Awala, S.I., Nguyen, N.-L., Yu, W.-J., Yang, H.-Y., von Bergen, M., Jehmlich, N., Kits, K.D., Loy, A., Dunfield, P.F., Dahl, C., Hyun, J.-H., Rhee, S.-K. (2022):
  Sulfur and methane oxidation by a single microorganism
  Proc. Natl. Acad. Sci. U.S.A. 119 (32), e2114799119 10.1073/pnas.2114799119
• Hoeger, A.-L., Jehmlich, N., Kipping, L., Griehl, C., Noll, M. (2022):
  Associated bacterial microbiome responds opportunistic once algal host Scenedesmus vacuolatus is attacked by endoparasite Amoeboaphelidium protococcarum
  Sci. Rep. 12 , art. 13187 10.1038/s41598-022-17114-1
• Jacoby, C., Ebenau-Jehle, C., Saum, K., Jehmlich, N., von Bergen, M., Brüls, T., Boll, M. (2022):
  Genes and enzymes involved in the biodegradation of the quaternary carbon compound pivalate in the denitrifying Thauera humireducens strain PIV-1
  Environ. Microbiol. 24 (7), 3181 - 3194 10.1111/1462-2920.16021
• Jensen Pedersen, K., Haange, S.-B., Žížalová, K., Viehof, A., Clavel, T., Leniček, M., Engelmann, B., Wick, L.Y., Schaap, F.G., Jehmlich, N., Rolle-Kampczyk, U., von Bergen, M. (2022):
  Eggerthella lenta DSM 2243 alleviates bile acid stress response in Clostridium ramosum and Anaerostipes caccae by transformation of bile acids
  Microorganisms 10 (10), art. 2025 10.3390/microorganisms10102025
• Kipping, L., Gossner, M.M., Koschorreck, M., Muszynski, S., Maurer, F., Weiser, W., Jehmlich, N., Noll, M. (2022):
  Emission of CO₂ and CH₄ from 13 deadwood tree species is linked to tree species identity and management intensity in forest and grassland habitats
  Glob. Biogeochem. Cycles 36 (5), e2021GB007143 10.1029/2021GB007143
• Kipping, L., Maurer, F., Gossner, M.M., Muszynski, S., Kahl, T., Kellner, H., Weiser, W.W., Jehmlich, N., Noll, M. (2022):
  Drivers of deadwood decay of 13 temperate tree species are similar between forest and grassland habitats
  Front. For. Glob. Change 5 , art. 1020737 10.3389/ffgc.2022.1020737
• König, R., Kiebist, J., Kalmbach, J., Herzog, R., Schmidtke, K.-U., Kellner, H., Ullrich, R., Jehmlich, N., Hofrichter, M., Scheibner, K. (2022):
  Novel unspecific peroxygenase from Truncatella angustata catalyzes the synthesis of bioactive lipid mediators
  Microorganisms 10 (7), art. 1267 10.3390/microorganisms10071267
• Kraft, B., Jehmlich, N., Larsen, M., Bristow, L.A., Könneke, M., Thamdrup, B., Canfield, D.E. (2022):
  Oxygen and nitrogen production by an ammonia-oxidizing archaeon
  Science 375 (6576), 97 - 100 10.1126/science.abe6733
• Münzker, J., Haase, N., Till, A., Sucher, R., Haange, S.-B., Nemetschke, L., Gnad, T., Jäger, E., Chen, J., Riede, S.J., Chakaroun, R., Massier, L., Kovacs, P., Ost, M., Rolle-Kampczyk, U., Jehmlich, N., Weinert, J., Heiker, J.T., Klöting, N., Seeger, G., Morawski, M., Keitel, V., Pfeifer, A., von Bergen, M., Heeren, J., Krügel, U., Fenske, W.K. (2022):
  Functional changes of the gastric bypass microbiota reactivate thermogenic adipose tissue and systemic glucose control via intestinal FXR-TGR5 crosstalk in diet-induced obesity
  Microbiome 10 , art. 96 10.1186/s40168-022-01264-5
• Puiggené, Ò., Cárdenas Espinosa, M.J., Schlosser, D., Thies, S., Jehmlich, N., Kappelmeyer, U., Schreiber, S., Wibberg, D., Kalinowski, J., Harms, H., Heipieper, H.J., Eberlein, C. (2022):
  Extracellular degradation of a polyurethane oligomer involving outer membrane vesicles and further insights on the degradation of 2,4-diaminotoluene in Pseudomonas capeferrum TDA1
  Sci. Rep. 12 , art. 2666 10.1038/s41598-022-06558-0
• Riesbeck, S., Petruschke, H., Rolle-Kampczyk, U., Schori, C., Ahrens, C.H., Eberlein, C., Heipieper, H.J., von Bergen, M., Jehmlich, N. (2022):
  Adaptation and resistance: How Bacteroides thetaiotaomicron copes with the bisphenol A substitute bisphenol F
  Microorganisms 10 (8), art. 1610 10.3390/microorganisms10081610
• Schöne, C., Poehlein, A., Jehmlich, N., Adlung, N., Daniel, R., von Bergen, M., Scheller, S., Rother, M. (2022):
  Deconstructing Methanosarcina acetivorans into an acetogenic archaeon
  Proc. Natl. Acad. Sci. U.S.A. 119 (2), e2113853119 10.1073/pnas.2113853119
• Schroeter, S.A., Eveillard, D., Chaffron, S., Zoppi, J., Kampe, B., Lohmann, P., Jehmlich, N., von Bergen, M., Sanchez-Arcos, C., Pohnert, G., Taubert, M., Küsel, K., Gleixner, G. (2022):
  Microbial community functioning during plant litter decomposition
  Sci. Rep. 12 , art. 7451 10.1038/s41598-022-11485-1
• Starke, R., Fiore-Donno, A.M., White III, R.A., Parente Fernandes, M.L., Martinović, T., Bastida, F., Delgado-Baquerizo, M., Jehmlich, N. (2022):
  Biomarker metaproteomics for relative taxa abundances across soil organisms
  Soil Biol. Biochem. 175 , art. 108861 10.1016/j.soilbio.2022.108861
• Starke, R., Schäpe, S.S., Van Den Bossche, T., Martinovic, T., Fernandes, M.L.P., Delgado-Baquerizo, M., Bastida, F., Jehmlich, N. (2022):
  Database-independent analysis of probable post-translational modifications of soil proteins across ecosystems
  bioRxiv 10.1101/2022.02.24.481781
• Taubert, M., Overholt, W.A., Heinze, B.M., Matanfack, G.A., Houhou, R., Jehmlich, N., von Bergen, M., Rösch, P., Popp, J., Küsel, K. (2022):
  Bolstering fitness via CO₂ fixation and organic carbon uptake: mixotrophs in modern groundwater
  ISME J. 16 (4), 1153 - 1162 10.1038/s41396-021-01163-x
• Torow, N., Li, R., Hitch, T., Mingels, C., Al Bounny, S., van Best, N., Stange, E.-L., Benabid, A., Rüttger, L., Gadermayr, M., Runge, S., Treichel, N., Merhof, D., Rosshart, S., Jehmlich, N., von Bergen, M., Heymann, F., Clavel, T., Tacke, F., Lelouard, H., Costa, I. (2022):
  Neonatal Peyer's patch cDC activation as a pacemaker of postnatal immune maturation
  Eur. J. Immunol. 52 (S1), 52 - 52 10.1002/eji.202270100

2021 (13)

• Anders, J., Petruschke, H., Jehmlich, N., Haange, S.-B., von Bergen, M., Stadler, P.F. (2021):
  A workflow to identify novel proteins based on the direct mapping of peptide-spectrum-matches to genomic locations
  BMC Bioinformatics 22 , art. 277 10.1186/s12859-021-04159-8
• Bastida, F., Jehmlich, N., Starke, R., Benndorf, D., López-Mondéjar, R., Plaza, C., Freixino, Z., Ramírez-Ortuño, C., Ruiz-Navarro, A., Díaz-López, M., Vera, A., Moreno, J.L., Eldridge, D.J., García, C., Delgado-Baquerizo, M. (2021):
  Structure and function of bacterial metaproteomes across biomes
  Soil Biol. Biochem. 160 , art. 108331 10.1016/j.soilbio.2021.108331
• Kasmanas, J.C., Bartholomäus, A., Borim Corrêa, F., Tal, T., Jehmlich, N., Herberth, G., von Bergen, M., Stadler, P.F., de Carvalho, A.C.P.L.F., Nunes da Rocha, U. (2021):
  HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes
  Nucleic Acids Res. 49 (D1), D743 - D750 10.1093/nar/gkaa1031
• Kimani, V., Ullrich, R., Büttner, E., Herzog, R., Kellner, H., Jehmlich, N., Hofrichter, M., Liers, C. (2021):
  First dye-decolorizing peroxidase from an ascomycetous fungus secreted by Xylaria grammica
  Biomolecules 11 (9), art. 1391 10.3390/biom11091391
• Kruse, S., Türkowsky, D., Birkigt, J., Matturro, B., Franke, S., Jehmlich, N., von Bergen, M., Westermann, M., Rossetti, S., Nijenhuis, I., Adrian, L., Diekert, G., Goris, T. (2021):
  Interspecies metabolite transfer and aggregate formation in a co-culture of Dehalococcoides and Sulfurospirillum dehalogenating tetrachloroethene to ethene
  ISME J. 15 (6), 1794 - 1809 10.1038/s41396-020-00887-6
• Li, Q., Cooper, R.E., Wegner, C.-E., Taubert, M., Jehmlich, N., von Bergen, M., Küsel, K. (2021):
  Insights into autotrophic activities and carbon flow in iron-rRich pelagic aggregates (iron snow)
  Microorganisms 9 (7), art. 1368 10.3390/microorganisms9071368
• Petruschke, H., Schori, C., Canzler, S., Riesbeck, S., Poehlein, A., Daniel, R., Frei, D., Segessemann, T., Zimmerman, J., Marinos, G., Kaleta, C., Jehmlich, N., Ahrens, C.H., von Bergen, M. (2021):
  Discovery of novel community-relevant small proteins in a simplified human intestinal microbiome
  Microbiome 9 , art. 55 10.1186/s40168-020-00981-z
• Rughöft, S., Jehmlich, N., Gutierrez, T., Kleindienst, S. (2021):
  Comparative proteomics of Marinobacter sp. TT1 reveals corexit impacts on hydrocarbon metabolism, chemotactic motility, and biofilm formation
  Microorganisms 9 (1), art. 3 10.3390/microorganisms9010003
• Starke, R., Fernandes, M.L.P., Morais, D.K., Odriozola, I., Baldrian, P., Jehmlich, N. (2021):
  Explorative meta-analysis of 417 extant archaeal genomes to predict their contribution to the total microbiome functionality
  Microorganisms 9 (2), art. 381 10.3390/microorganisms9020381
• Starke, R., Schäpe, S.S., Jehmlich, N., von Bergen, M. (2021):
  Protein stable isotope probing with H₂¹⁸O differentiated cold stress response at permissive temperatures from general growth at optimal conditions in Escherichia coli K12
  Rapid Commun. Mass Spectrom. 35 (1), e8941 10.1002/rcm.8941
• Starke, R., Siles, J.A., Fernandes, M.L.P., Schallert, K., Benndorf, D., Plaza, C., Jehmlich, N., Delgado-Baquerizo, M., Bastida, F. (2021):
  The structure and function of soil archaea across biomes
  J. Proteomics 237 , art. 104147 10.1016/j.jprot.2021.104147
• Van Den Bossche, T., Arntzen, M.Ø., Becher, D., Benndorf, D., Eijsink, V.G.H., Henry, C., Jagtap, P.D., Jehmlich, N., Juste, C., Kunath, B.J., Mesuere, B., Muth, T., Pope, P.B., Seifert, J., Tanca, A., Uzzau, S., Wilmes, P., Hettich, R.L., Armengaud, J. (2021):
  The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes
  Microbiome 9 , art. 243 10.1186/s40168-021-01176-w
• Van Den Bossche, T., Kunath, B.J., Schallert, K., Schäpe, S.S., Abraham, P.E., Armengaud, J., Arntzen, M.Ø., Bassignani, A., Benndorf, D., Fuchs, S., Giannone, R.J., Griffin, T.J., Hagen, L.H., Halder, R., Henry, C., Hettich, R.L., Heyer, R., Jagtap, P., Jehmlich, N., Jensen, M., Juste, C., Kleiner, M., Langella, O., Lehmann, T., Leith, E., May, P., Mesuere, B., Miotello, G., Peters, S.L., Pible, O., Queiros, P.T., Reichl, U., Renard, B.Y., Schiebenhoefer, H., Sczyrba, A., Tanca, A., Trappe, K., Trezzi, J.-P., Uzzau, S., Verschaffelt, P., von Bergen, M., Wilmes, P., Wolf, M., Martens, L., Muth, T. (2021):
  Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows
  Nat. Commun. 12 , art. 7305 10.1038/s41467-021-27542-8

2020 (23)

• Ananbeh, H., Merlos Rodrigo, M.A., Jelinkova, P., Strmiska, V., Splichal, Z., Jehmlich, N., Michalkova, H., Stojanović, M., Voberkova, S., Adam, V., Moulick, A. (2020):
  Soil protein as a potential antimicrobial agent against methicillin-resistant Staphylococcus aureus
  Environ. Res. 188 , art. 109320 10.1016/j.envres.2020.109320
• Dey, P., Malik, A., Mishra, A., Singh, D.K., von Bergen, M., Jehmlich, N. (2020):
  Mechanistic insight to mycoremediation potential of a metal resistant fungal strain for removal of hazardous metals from multimetal pesticide matrix
  Environ. Pollut. 262 , art. 114255 10.1016/j.envpol.2020.114255
• Farag, M.A., Abdelwareth, A., Sallam, I.E., el Shorbagi, M., Jehmlich, N., Fritz, K., Schaepe, S., Rolle-Kampczyk, U., Ehrlich, A., Wessjohann, L.A., von Bergen, M. (2020):
  Metabolomics reveals impact of seven functional foods on metabolic pathways in a gut microbiota model
  J. Adv. Res. 23 , 47 - 59 10.1016/j.jare.2020.01.001
• Fritz-Wallace, K., Engelmann, B., Krause, J.L., Schäpe, S.S., Pöppe, J., Herberth, G., Rösler, U., Jehmlich, N., von Bergen, M., Rolle-Kampczyk, U. (2020):
  Quantification of glyphosate and AMPA from microbiome reactor fluids
  Rapid Commun. Mass Spectrom. 34 (7), e8668 10.1002/rcm.8668
• Haange, S.-B., Jehmlich, N., Krügel, U., Hintschich, C., Wehrmann, D., Hankir, M., Seyfried, F., Froment, J., Hübschmann, T., Müller, S., Wissenbach, D.K., Kang, K.H., Buettner, C., Panagiotou, G., Noll, M., Rolle-Kampczyk, U., Fenske, W., von Bergen, M. (2020):
  Gastric bypass surgery in a rat model alters the community structure and functional composition of the intestinal microbiota independently of weight loss
  Microbiome 8 , art. 13 10.1186/s40168-020-0788-1
• Jacoby, C., Krull, J., Andexer, J., Jehmlich, N., von Bergen, M., Brüls, T., Boll, M. (2020):
  Channeling C1 metabolism toward S-adenosylmethionine-dependent conversion of estrogens to androgens in estrogen-degrading bacteria
  mBio 11 (4), e01259-20 10.1128/mBio.01259-20
• Kipping, L., Holzscheck, N., Maurer, F., Muszynski, S., Noll, M., Jehmlich, N. (2020):
  Microbial metaproteome data from decayed beech dead wood
  Data Brief 29 , art. 105285 10.1016/j.dib.2020.105285
• Krause, J.L., Haange, S.-B., Schäpe, S.S., Engelmann, B., Rolle-Kampczyk, U., Fritz-Wallace, K., Wang, Z., Jehmlich, N., Türkowsky, D., Schubert, K., Pöppe, J., Bote, K., Rösler, U., Herberth, G., von Bergen, M. (2020):
  The glyphosate formulation Roundup^® LB plus influences the global metabolome of pig gut microbiota in vitro
  Sci. Total Environ. 745 , art. 140932 10.1016/j.scitotenv.2020.140932
• Krause, J.L., Schaepe, S.S., Fritz-Wallace, K., Engelmann, B., Rolle-Kampczyk, U., Kleinsteuber, S., Schattenberg, F., Liu, Z., Müller, S., Jehmlich, N., von Bergen, M., Herberth, G. (2020):
  Following the community development of SIHUMIx – a new intestinal in vitro model for bioreactor use
  Gut Microbes 11 (4), 1116 - 1129 10.1080/19490976.2019.1702431
• Krause, J.L., Schäpe, S.S., Schattenberg, F., Müller, S., Ackermann, G., Rolle-Kampczyk, U.E., Jehmlich, N., Pierzchalski, A., von Bergen, M., Herberth, G. (2020):
  The activation of mucosal-associated invariant T (MAIT) cells is affected by microbial diversity and riboflavin utilization in vitro
  Front. Microbiol. 11 , art. 755 10.3389/fmicb.2020.00755
• Lohmann, P., Benk, S., Gleixner, G., Potthast, K., Michalzik, B., Jehmlich, N., von Bergen, M. (2020):
  Seasonal patterns of dominant microbes involved in central nutrient cycles in the subsurface
  Microorganisms 8 (11), art. 1694 10.3390/microorganisms8111694
• Lohmann, P., Schäpe, S.S., Haange, S.-B., Oliphant, K., Allen-Vercoe, E., Jehmlich, N., von Bergen, M. (2020):
  Function is what counts: how microbial community complexity affects species, proteome and pathway coverage in metaproteomics
  Expert Rev. Proteomics 17 (2), 163 - 173 10.1080/14789450.2020.1738931
• Mendler, A., Geier, F., Haange, S.-B., Pierzchalski, A., Krause, J.L., Nijenhuis, I., Froment, J., Jehmlich, N., Berger, U., Ackermann, G., Rolle-Kampczyk, U., von Bergen, M., Herberth, G. (2020):
  Mucosal-associated invariant T-Cell (MAIT) activation is altered by chlorpyrifos- and glyphosate-treated commensal gut bacteria
  J. Immunotoxicol. 17 (1), 10 - 20 10.1080/1547691X.2019.1706672
• Meyer-Cifuentes, I.E., Werner, J., Jehmlich, N., Will, S.E., Neumann-Schaal, M., Öztürk, B. (2020):
  Synergistic biodegradation of aromatic-aliphatic copolyester plastic by a marine microbial consortium
  Nat. Commun. 11 , art. 5790 10.1038/s41467-020-19583-2
• Meyer-Cifuentes, I., Gruhl, S., Haange, S.-B., Lünsmann, V., Jehmlich, N., von Bergen, M., Heipieper, H.J., Müller, J.A. (2020):
  Benzylsuccinate synthase is post-transcriptionally regulated in the toluene-degrading denitrifier Magnetospirillum sp. strain 15-1
  Microorganisms 8 (5), art. 681 10.3390/microorganisms8050681
• Pereira, F.C., Wasmund, K., Cobankovic, I., Jehmlich, N., Herbold, C.W., Lee, K.S., Sziranyi, B., Vesely, C., Decker, T., Stocker, R., Warth, B., von Bergen, M., Wagner, M., Berry, D. (2020):
  Rational design of a microbial consortium of mucosal sugar utilizers reduces Clostridiodes difficile colonization
  Nat. Commun. 11 , art. 5104 10.1038/s41467-020-18928-1
• Petruschke, H., Anders, J., Stadler, P.F., Jehmlich, N., von Bergen, M. (2020):
  Enrichment and identification of small proteins in a simplified human gut microbiome
  J. Proteomics 213 , art. 103604 10.1016/j.jprot.2019.103604
• Rohwerder, T., Rohde, M.-T., Jehmlich, N., Purswani, J. (2020):
  Actinobacterial degradation of 2-hydroxyisobutyric acid proceeds via acetone and formyl-CoA by employing a thiamine-dependent lyase reaction
  Front. Microbiol. 11 , art. 691 10.3389/fmicb.2020.00691
• Ros, M., Blaya, J., Baldrian, P., Bastida, F., Richnow, H.H., Jehmlich, N., Pascual, J.A. (2020):
  In vitro elucidation of suppression effects of composts to soil-borne pathogen Phytophthora nicotianae on pepper plants using 16S amplicon sequencing and metaproteomics
  Renew. Agr. Food Syst. 35 (2), 206 - 214 10.1017/S1742170518000467
• Schäpe, S.S., Krause, J.L., Masanetz, R.K., Riesbeck, S., Starke, R., Rolle-Kampczyk, U., Eberlein, C., Heipieper, H.J., Herberth, G., von Bergen, M., Jehmlich, N. (2020):
  Environmentally relevant concentration of bisphenol S shows slight effects on SIHUMIx
  Microorganisms 8 (9), art. 1436 10.3390/microorganisms8091436
• Starke, R., Capek, P., Morais, D., Callister, S.J., Jehmlich, N. (2020):
  The total microbiome functions in bacteria and fungi
  J. Proteomics 213 , art. 103623 10.1016/j.jprot.2019.103623
• Starke, R., Capek, P., Morais, D., Jehmlich, N., Baldrian, P. (2020):
  Explorative meta-analysis of 377 extant fungal genomes predicted a total mycobiome functionality of 42.4 million KEGG functions
  Front. Microbiol. 11 , art. 143 10.3389/fmicb.2020.00143
• Starke, R., Oliphant, K., Jehmlich, N., Schäpe, S.S., Sachsenberg, T., Kohlbacher, O., Allen-Vercoe, E., von Bergen, M. (2020):
  Tracing incorporation of heavy water into proteins for species-specific metabolic activity in complex communities
  J. Proteomics 222 , art. 103791 10.1016/j.jprot.2020.103791

2019 (16)

• Anselmann, S.E.L., Löffler, C., Stärk, H.-J., Jehmlich, N., von Bergen, M., Brüls, T., Boll, M. (2019):
  The class II benzoyl‐coenzyme A reductase complex from the sulfate‐reducing Desulfosarcina cetonica
  Environ. Microbiol. 21 (11), 4241 - 4252 10.1111/1462-2920.14784
• Bastida, F., García, C., Fierer, N., Eldridge, D.J., Bowker, M.A., Abades, S., Alfaro, F.D., Berhe, A.A., Cutler, N.A., Gallardo, A., García-Velázquez, L., Hart, S.C., Hayes, P.E., Hernández, T., Hseu, Z.-Y., Jehmlich, N., Kirchmair, M., Lambers, H., Neuhauser, S., Peña-Ramírez, V.M., Pérez, C.A., Reed, S.C., Santos, F.A.M., Siebe, C., Sullivan, B.W., Trivedi, P., Vera, A., Williams, M.A., Moreno, J.L., Delgado-Baquerizo, M. (2019):
  Global ecological predictors of the soil priming effect
  Nat. Commun. 10 , art. 3481 10.1038/s41467-019-11472-7
• Bastida, F., Jehmlich, N., Martínez-Navarro, J., Bayona, V., García, C., Moreno, J.L. (2019):
  The effects of struvite and sewage sludge on plant yield and the microbial community of a semiarid Mediterranean soil
  Geoderma 337 , 1051 - 1057 10.1016/j.geoderma.2018.10.046
• Bastida, F., López-Mondéjar, R., Baldrian, P., Andrés-Abellán, M., Jehmlich, N., Torres, I.F., García, C., López-Serrano, F.R. (2019):
  When drought meets forest management: Effects on the soil microbial community of a Holm oak forest ecosystem
  Sci. Total Environ. 662 , 276 - 286 10.1016/j.scitotenv.2019.01.233
• Buettner, C., von Bergen, M., Jehmlich, N., Noll, M. (2019):
  Pseudomonas spp. are key players in agricultural biogas substrate degradation
  Sci. Rep. 9 , art. 12871 10.1038/s41598-019-49313-8
• Geiger, R.A., Junghare, M., Mergelsberg, M., Ebenau‐Jehle, C., Jesenofsky, V.J., Jehmlich, N., von Bergen, M., Schink, B., Boll, M. (2019):
  Enzymes involved in phthalate degradation in sulphate‐reducing bacteria
  Environ. Microbiol. 21 (10), 3601 - 3612 10.1111/1462-2920.14681
• Haange, S.-B., Jehmlich, N., Hoffmann, M., Weber, K., Lehmann, J., von Bergen, M., Slanina, J. (2019):
  Disease development is accompanied by changes in bacterial protein abundance and functions in a refined model of dextran sulfate sodium (DSS)-induced colitis
  J. Proteome Res. 18 (4), 1774 - 1786 10.1021/acs.jproteome.8b00974
• Haange, S.-B., Jehmlich, N., Jacobi, T., von Bergen, M. (2019):
  Chancen und Risiken von Metaproteomik in der Mikrobiomforschung. Opportunities and pitfalls of metaproteomics in microbiome research
  Adipositas - Ursachen, Folgeerkrankungen, Therapie 13 (4), 205 - 213 10.1055/a-0966-9652
• Ke, X., Walker, A., Haange, S.-B., Lagkouvardos, I., Liu, Y., Schmitt-Kopplin, P., von Bergen, M., Jehmlich, N., He, X., Clavel, T., Cheung, P.C.K. (2019):
  Synbiotic-driven improvement of metabolic disturbances is associated with changes in the gut microbiome in diet-induced obese mice
  Mol. Metab. 22 , 96 - 109 10.1016/j.molmet.2019.01.012
• Reina, R., Kellner, H., Hess, J., Jehmlich, N., García-Romera, I., Aranda, E., Hofrichter, M., Liers, C. (2019):
  Genome and secretome of Chondrostereum purpureum correspond to saprotrophic and phytopathogenic life styles
  PLOS One 14 (3), e0212769 10.1371/journal.pone.0212769
• Schäpe, S.S., Krause, J.L., Engelmann, B., Fritz-Wallace, K., Schattenberg, F., Liu, Z., Müller, S., Jehmlich, N., Rolle-Kampczyk, U., Herberth, G., von Bergen, M. (2019):
  The simplified human intestinal microbiota (SIHUMIx) shows high structural and functional resistance against changing transit times in in vitro bioreactors
  Microorganisms 7 (12), art. 641 10.3390/microorganisms7120641
• Starke, R., Jehmlich, N., Alfaro, T., Dohnalkova, A., Capek, P., Bell, S.L., Hofmockel, K.S. (2019):
  Incomplete cell disruption of resistant microbes
  Sci. Rep. 9 , art. 5618 10.1038/s41598-019-42188-9
• Starke, R., Jehmlich, N., Bastida, F. (2019):
  Using proteins to study how microbes contribute to soil ecosystem services: The current state and future perspectives of soil metaproteomics
  J. Proteomics 198 , 50 - 58 10.1016/j.jprot.2018.11.011
• Taubert, M., Grob, C., Crombie, A., Howat, A.M., Burns, O.J., Weber, M., Lott, C., Kaster, A.-K., Vollmers, J., Jehmlich, N., von Bergen, M., Chen, Y., Murrell, J.C. (2019):
  Communal metabolism by Methylococcaceae and Methylophilaceae is driving rapid aerobic methane oxidation in sediments of a shallow seep near Elba, Italy
  Environ. Microbiol. 21 (10), 3780 - 3795 10.1111/1462-2920.14728
• Türkowsky, D., Lohmann, P., Mühlenbrink, M., Schubert, T., Adrian, L., Goris, T., Jehmlich, N., von Bergen, M. (2019):
  Thermal proteome profiling allows quantitative assessment of interactions between tetrachloroethene reductive dehalogenase and trichloroethene
  J. Proteomics 192 , 10 - 17 10.1016/j.jprot.2018.05.018
• Tveit, A.T., Hestnes, A.G., Robinson, S.L., Schintlmeister, A., Dedysh, S.N., Jehmlich, N., von Bergen, M., Herbold, C., Wagner, M., Richter, A., Svenning, M.M. (2019):
  Widespread soil bacterium that oxidizes atmospheric methane
  Proc. Natl. Acad. Sci. U.S.A. 116 (17), 8515 - 8524 10.1073/pnas.1817812116

2018 (14)

• Bastida, F., Crowther, T.W., Prieto, I., Routh, D., García, C., Jehmlich, N. (2018):
  Climate shapes the protein abundance of dominant soil bacteria
  Sci. Total Environ. 640–641 , 18 - 21 10.1016/j.scitotenv.2018.05.288
• Bastida, F., Jehmlich, N., Torres, I.F., García, C. (2018):
  The extracellular metaproteome of soils under semiarid climate: A methodological comparison of extraction buffers
  Sci. Total Environ. 619–620 , 707 - 711 10.1016/j.scitotenv.2017.11.134
• Becher, E., Heese, A., Claußen, L., Eisen, S., Jehmlich, N., Rohwerder, T., Purswani, J. (2018):
  Active site alanine preceding catalytic cysteine determines unique substrate specificity in bacterial CoA‐acylating prenal dehydrogenase
  FEBS Lett. 592 (7), 1150 - 1160 10.1002/1873-3468.13019
• Cerdó, T., Ruiz, A., Acuña, I., Jáuregui, R., Jehmlich, N., Haange, S.-B., von Bergen, M., Suárez, A., Campoy, C. (2018):
  Gut microbial functional maturation and succession during human early life
  Environ. Microbiol. 20 (6), 2160 - 2177 10.1111/1462-2920.14235
• Chupani, L., Niksirat, H., Lünsmann, V., Haange, S.-B., von Bergen, M., Jehmlich, N., Zuskova, E. (2018):
  Insight into the modulation of intestinal proteome of juvenile common carp (Cyprinus carpio L.) after dietary exposure to ZnO nanoparticles
  Sci. Total Environ. 613-614 , 62 - 71 10.1016/j.scitotenv.2017.08.129
• Deutsch, E.W., Perez-Riverol, Y., Chalkley, R.J., Wilhelm, M., Tate, S., Sachsenberg, T., Walzer, M., Käll, L., Delanghe, B., Böcker, S., Schymanski, E.L., Wilmes, P., Dorfer, V., Kuster, B., Volders, P.-J., Jehmlich, N., Vissers, J.P.C., Wolan, D.W., Wang, A.Y., Mendoza, L., Shofstahl, J., Dowsey, A.W., Griss, J., Salek, R.M., Neumann, S., Binz, P.-A., Lam, H., Vizcaíno, J.A., Bandeira, N., Röst, H. (2018):
  Expanding the use of spectral libraries in proteomics
  J. Proteome Res. 17 (12), 4051 - 4060 10.1021/acs.jproteome.8b00485
• Herbst, F.-A., Jehmlich, N., von Bergen, M., Schmidt, F. (2018):
  Sulfur-³⁴S and ³⁶S stable isotope labeling of amino acids for quantification (SULAQ_34/36) of proteome analyses
  In: Becher, D. (ed.)
  Microbial proteomics : methods and protocols
  Methods in Molecular Biology 1841
  Springer Nature, p. 163 - 174 10.1007/978-1-4939-8695-8_12
• Lechner, U., Türkowsky, D., Dinh, T.T.H., Al-Fathi, H., Schwoch, S., Franke, S., Gerlach, M.-S., Koch, M., von Bergen, M., Jehmlich, N., Dang, T.C.H. (2018):
  Desulfitobacterium contributes to the microbial transformation of 2,4,5‐T by methanogenic enrichment cultures from a Vietnamese active landfill
  Microb. Biotechnol. 11 (6), 1137 - 1156 10.1111/1751-7915.13301
• Malik, A.A., Puissant, J., Buckeridge, K.M., Goodall, T., Jehmlich, N., Chowdhury, S., Gweon, H.S., Peyton, J.M., Mason, K.E., van Agtmaal, M., Blaud, A., Clark, I.A., Whitaker, J., Pywell, R.F., Ostle, N., Gleixner, G., Griffiths, R.I. (2018):
  Land use driven change in soil pH affects microbial carbon cycling processes
  Nat. Commun. 9 , art. 3591 10.1038/s41467-018-05980-1
• Taubert, M., Stöckel, S., Geesink, P., Girnus, S., Jehmlich, N., von Bergen, M., Rösch, P., Popp, J., Küsel, K. (2018):
  Tracking active groundwater microbes with D₂O labelling to understand their ecosystem function
  Environ. Microbiol. 20 (1), 369 - 384 10.1111/1462-2920.14010
• Türkowsky, D., Esken, J., Goris, T., Schubert, T., Diekert, G., Jehmlich, N., von Bergen, M. (2018):
  A retentive memory of tetrachloroethene respiration in Sulfurospirillum halorespirans - involved proteins and a possible link to acetylation of a two-component regulatory system
  J. Proteomics 181 , 36 - 46 10.1016/j.jprot.2018.03.030
• Türkowsky, D., Jehmlich, N., Diekert, G., Adrian, L., von Bergen, M., Goris, T. (2018):
  An integrative overview of genomic, transcriptomic and proteomic analyses in organohalide respiration research
  FEMS Microbiol. Ecol. 94 (3), fiy013 10.1093/femsec/fiy013
• Vásquez-Piñeros, M.A., Martínez-Lavanchy, P.M., Jehmlich, N., Pieper, D.H., Rincón, C.A., Harms, H., Junca, H., Heipieper, H.J. (2018):
  Delftia sp. LCW, a strain isolated from a constructed wetland shows novel properties for dimethylphenol isomers degradation
  BMC Microbiol. 18 , art. 108 10.1186/s12866-018-1255-z
• Wintsche, B., Jehmlich, N., Popp, D., Harms, H., Kleinsteuber, S. (2018):
  Metabolic adaptation of methanogens in anaerobic digesters upon trace element limitation
  Front. Microbiol. 9 , art. 405 10.3389/fmicb.2018.00405

2017 (13)

• Bastida, F., Torres, I.F., Andrés-Abellán, M., Baldrian, P., López-Mondéjar, R., Větrovský, T., Richnow, H.H., Starke, R., Ondoño, S., García, C., López-Serrano, F., Jehmlich, N. (2017):
  Differential sensitivity of total and active soil microbial communities to drought and forest management
  Glob. Change Biol. 23 (10), 4185 - 4203 10.1111/gcb.13790
• Chupani, L., Zusková, É., Niksirat, H., Panáček, A., Lünsmann, V., Haange, S.-B., von Bergen, M., Jehmlich, N. (2017):
  Effects of chronic dietary exposure of zinc oxide nanoparticles on the serum protein profile of juvenile common carp (Cyprinus carpio L.)
  Sci. Total Environ. 579 , 1504 - 1511 10.1016/j.scitotenv.2016.11.154
• Ebenau-Jehle, C., Mergelsberg, M., Fischer, S., Brüls, T., Jehmlich, N., von Bergen, M., Boll, M. (2017):
  An unusual strategy for the anoxic biodegradation of phthalate
  ISME J. 11 (1), 224 - 236 10.1038/ismej.2016.91
• Herbold, C.W., Lehtovirta-Morley, L.E., Jung, M.-Y., Jehmlich, N., Hausmann, B., Han, P., Loy, A., Pester, M., Sayavedra-Soto, L.A., Rhee, S.-K., Prosser, J.I., Nicol, G.W., Wagner, M., Gubry-Rangin, C. (2017):
  Ammonia-oxidising archaea living at low pH: Insights from comparative genomics
  Environ. Microbiol. 19 , 4939 - 4952 10.1111/1462-2920.13971
• Kadisch, M., Julsing, M.K., Schrewe, M., Jehmlich, N., Scheer, B., von Bergen, M., Schmid, A., Bühler, B. (2017):
  Maximization of cell viability rather than biocatalyst activity improves whole-cell ω-oxyfunctionalization performance
  Biotechnol. Bioeng. 114 (4), 874 - 884 10.1002/bit.26213
• Kiebist, J., Schmidtke, K.-U., Zimmermann, J., Kellner, H., Jehmlich, N., Ullrich, R., Zänder, D., Hofrichter, M., Scheibner, K. (2017):
  A peroxygenase from Chaetomium globosum catalyzes the selective oxygenation of testosterone
  ChemBioChem 18 (6), 563 - 569 10.1002/cbic.201600677
• Oberbach, A., Haange, S.-B., Schlichting, N., Heinrich, M., Lehmann, S., Till, H., Hugenholtz, F., Kullnick, Y., Smidt, H., Frank, K., Seifert, J., Jehmlich, N., von Bergen, M. (2017):
  Metabolic in vivo labeling highlights differences of metabolically active microbes from the mucosal gastrointestinal microbiome between high-fat and normal chow diet
  J. Proteome Res. 16 (4), 1593 - 1604 10.1021/acs.jproteome.6b00973
• Pinaud, L., Ferrari, M.L., Friedman, R., Jehmlich, N., von Bergen, M., Phalipon, A., Sansonetti, P.J., Campbell-Valois, F.-X. (2017):
  Identification of novel substrates of Shigella T3SA through analysis of its virulence plasmid-encoded secretome
  PLOS One 12 (10), e0186920 10.1371/journal.pone.0186920
• Starke, R., Bastida, F., Abadía, J., García, C., Nicolás, E., Jehmlich, N. (2017):
  Ecological and functional adaptations to water management in a semiarid agroecosystem: a soil metaproteomics approach
  Sci. Rep. 7 , art. 10221 10.1038/s41598-017-09973-w
• Starke, R., Müller, M., Gaspar, M., Marz, M., Küsel, K., Totsche, K.U., von Bergen, M., Jehmlich, N. (2017):
  Candidate Brocadiales dominates C, N and S cycling in anoxic groundwater of a pristine limestone-fracture aquifer
  J. Proteomics 152 , 153 - 160 10.1016/j.jprot.2016.11.003
• Taubert, M., Grob, C., Howar, A.M., Burns, O.J., Pratscher, J., Jehmlich, N., von Bergen, M., Richnow, H.H., Chen, Y., Murrell, J.C. (2017):
  Methylamine as a nitrogen source for microorganisms from a coastal marine environment
  Environ. Microbiol. 19 (6), 2246 - 2257 10.1111/1462-2920.13709
• Teumer, A., Qi, Q., Nethander, M., Aschard, H., Bandinelli, S., Beekman, M., Berndt, S.I., Bidlingmaier, M., Broer, L., Cappola, A., Ceda, G.P., Chanock, S., Chen, M.-H., Chen, T.C., Chen, Y.-D.I., Chung, J., Del Greco Miglianico, F., Eriksson, J., Ferrucci, L., Friedrich, N., Gnewuch, C., Goodarzi, M.O., Grarup, N., Guo, T., Hammer, E., Hayes, R.B., Hicks, A.A., Hofman, A., Houwing-Duistermaat, J.J., Hu, F., Hunter, D.J., Husemoen, L.L., Isaacs, A., Jacobs, K.B., Janssen, J.A.M.J.L., Jansson, J.-O., Jehmlich, N., Johnson, S., Juul, A., Karlsson, M., Kilpelainen, T.O., Kovacs, P., Kraft, P., Li, C., Linneberg, A., Liu, Y., Loos, R.J.F., Lorentzon, M., Lu, Y., Maggio, M., Magi, R., Meigs, J., Mellström, D., Nauck, M., Newman, A.B., Pollak, M.N., Pramstaller, P.P., Prokopenko, I., Psaty, B.M., Reincke, M., Rimm, R.B., Rotter, J.I., Saint Pierre, A., Schurmann, C., Seshadri, S., Sjögren, K., Slagboom, P.E., Strickler, H.D., Stumvoll, M., Suh, Y., Sun, Q., Zhang, C., Svensson, J., Tanaka, T., Tare, A., Tönjes, A., Uh, H.-W., van Duijn, C., van Heemst, D., Vandenput, L., Vasan, R.S., Völker, U., Willems, S.M., Ohlsson, C., Wallaschofski, H., Kaplan, R.C. (2017):
  Erratum: Genomewide meta-analysis identifies loci associated with IGF-I and IGFBP-3 levels with impact on age-related traits (vol 15, pg 811, 2016)
  Aging Cell 16 (4), 898 10.1111/acel.12612
• Warnke, M., Jacoby, C., Jung, T., Agne, M., Mergelsberg, M., Starke, R., Jehmlich, N., von Bergen, M., Richnow, H.-H., Brüls, T., Boll, M. (2017):
  A patchwork pathway for oxygenase-independent degradation of side chain containing steroids
  Environ. Microbiol. 19 (11), 4684 - 4699 10.1111/1462-2920.13933

2016 (20)

• Bastida, F., Jehmlich, N. (2016):
  It's all about functionality: How can metaproteomics help us to discuss the attributes of ecological relevance in soil?
  J. Proteomics 144 , 159 - 161 10.1016/j.jprot.2016.06.002
• Bastida, F., Jehmlich, N., Lima, K., Morris, B.E.L., Richnow, H.H., Hernández, T., von Bergen, M., García, C. (2016):
  The ecological and physiological responses of the microbial community from a semiarid soil to hydrocarbon contamination and its bioremediation using compost amendment
  J. Proteomics 135 , 162 - 169 10.1016/j.jprot.2015.07.023
• Bastida, F., Torres, I.F., Moreno, J.L., Baldrian, P., Ondoño, S., Ruiz-Navarro, A., Hernández, T., Richnow, H.H., Starke, R., García, C., Jehmlich, N. (2016):
  The active microbial diversity drives ecosystem multifunctionality and is physiologically related to carbon availability in Mediterranean semi-arid soils
  Mol. Ecol. 25 (18), 4660 - 4673 10.1111/mec.13783
• Dey, P., Gola, D., Mishra, A., Malik, A., Kumar, P., Singh, D.K., Patel, N., von Bergen, M., Jehmlich, N. (2016):
  Comparative performance evaluation of multi-metal resistant fungal strains for simultaneous removal of multiple hazardous metals
  J. Hazard. Mater. 318 , 679 - 685 10.1016/j.jhazmat.2016.07.025
• Goris, T., Schiffmann, C.L., Gadkari, J., Adrian, L., von Bergen, M., Diekert, G., Jehmlich, N. (2016):
  Proteomic data set of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates
  Data Brief 8 , 637 - 642 10.1016/j.dib.2016.06.022
• Haange, S.-B., Jehmlich, N. (2016):
  Proteomic interrogation of the gut microbiota: potential clinical impact
  Expert Rev. Proteomics 13 (6), 535 - 537 10.1080/14789450.2016.1190652
• Herbst, F.-A., Lünsmann, V., Kjeldal, H., Jehmlich, N., Tholey, A., von Bergen, M., Nielsen, J.L., Hettich, R.L., Seifert, J., Nielsen, P.H. (2016):
  Enhancing metaproteomics—The value of models and defined environmental microbial systems
  Proteomics 16 (5), 783 - 798 10.1002/pmic.201500305
• Jehmlich, N., Vogt, C., Lünsmann, V., Richnow, H.H., von Bergen, M. (2016):
  Protein-SIP in environmental studies
  Curr. Opin. Biotechnol. 41 , 26 - 33 10.1016/j.copbio.2016.04.010
• Lünsmann, V., Kappelmeyer, U., Benndorf, R., Martínez-Lavanchy, P.M., Taubert, A., Adrian, L., Duarte, M., Pieper, D.H., von Bergen, M., Müller, J.A., Heipieper, H.J., Jehmlich, N. (2016):
  In situ protein-SIP highlights Burkholderiaceae as key players degrading toluene by para ring hydroxylation in a constructed wetland model
  Environ. Microbiol. 18 (4), 1176 - 1186 10.1111/1462-2920.13133
• Lünsmann, V., Kappelmeyer, U., Taubert, A., Nijenhuis, I., von Bergen, M., Heipieper, H.J., Müller, J.A., Jehmlich, N. (2016):
  Aerobic toluene degraders in the rhizosphere of a constructed wetland model show diurnal polyhydroxyalkanoate metabolism
  Appl. Environ. Microb. 82 (14), 4126 - 4132 10.1128/AEM.00493-16
• Malik, A.A., Chowdhury, S., Schlager, V., Oliver, A., Puissant, J., Vazquez, P.G.M., Jehmlich, N., von Bergen, M., Griffiths, R.I., Gleixner, G. (2016):
  Soil fungal:bacterial ratios are linked to altered carbon cycling
  Front. Microbiol. 7 , art. 1247 10.3389/fmicb.2016.01247
• Men, Y., Han, P., Helbling, D.E., Jehmlich, N., Herbold, C., Gulde, R., Onnis-Hayden, A., Gu, A.Z., Johnson, D.R., Wagner, M., Fenner, K. (2016):
  Biotransformation of two pharmaceuticals by the ammonia-oxidizing archaeon Nitrososphaera gargensis
  Environ. Sci. Technol. 50 (9), 4682 - 4692 10.1021/acs.est.5b06016
• Oberbach, A., Adams, V., Schlichting, N., Heinrich, M., Kullnick, Y., Lehmann, S., Feder, S., Correia, J.C., Mohr, F.-W., Völker, U., Jehmlich, N. (2016):
  Proteome profiles of HDL particles of patients with chronic heart failure are associated with immune response and also include bacteria proteins
  Clin. Chim. Acta 453 , 114 - 122 10.1016/j.cca.2015.12.005
• Schaubeck, M., Clavel, T., Calasan, J., Lagkouvardos, I., Haange, S.B., Jehmlich, N., Basic, M., Dupont, A., Hornef, M., von Bergen, M., Bleich, A., Haller, D. (2016):
  Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence
  Gut 65 , 225 - 237 10.1136/gutjnl-2015-309333
• Schiffmann, C.L., Otto, W., Hansen, R., Nielsen, P.H., Adrian, L., Seifert, J., von Bergen, M., Jehmlich, N. (2016):
  Proteomic dataset of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor
  Data Brief 7 , 253 - 256 10.1016/j.dib.2016.02.037
• Starke, R., Keller, A., Jehmlich, N., Vogt, C., Richnow, H.H., Kleinsteuber, S., von Bergen, M., Seifert, J. (2016):
  Pulsed ¹³C₂-acetate protein-SIP unveils Epsilonproteobacteria as dominant acetate utilizers in a sulfate-reducing microbial community mineralizing benzene
  Microb. Ecol. 71 (4), 901 - 911 10.1007/s00248-016-0731-y
• Starke, R., Kermer, R., Ullmann-Zeunert, L., Baldwin, I.T., Seifert, J., Bastida, F., von Bergen, M., Jehmlich, N. (2016):
  Bacteria dominate the short-term assimilation of plant-derived N in soil
  Soil Biol. Biochem. 96 , 30 - 38 10.1016/j.soilbio.2016.01.009
• Teumer, A., Qi, Q., Nethander, M., Aschard, H., Bandinelli, S., Beekman, M., Berndt, S.I., Bidlingmaier, M., Broer, L., Cappola, A., Ceda, G.P., Chanock, S., Chen, M.-H., Chen, T.C., Chen, Y.-D.I., Chung, J., Del Greco Miglianico, F., Eriksson, J., Ferrucci, L., Friedrich, N., Gnewuch, C., Goodarzi, M.O., Grarup, N., Guo, T., Hammer, E., Hayes, R.B., Hicks, A.A., Hofman, A., Houwing-Duistermaat, J.J., Hu, F., Hunter, D.J., Husemoen, L.L., Isaacs, A., Jacobs, K.B., Janssen, J.A.M.J.L., Jansson, J.-O., Jehmlich, N., Johnson, S., Juul, A., Karlsson, M., Kilpelainen, T.O., Kovacs, P., Kraft, P., Li, C., Linneberg, A., Liu, Y., Loos, R.J.F., Lorentzon, M., Lu, Y., Maggio, M., Magi, R., Meigs, J., Mellström, D., Nauck, M., Newman, A.B., Pollak, M.N., Pramstaller, P.P., Prokopenko, I., Psaty, B.M., Reincke, M., Rimm, R.B., Rotter, J.I., Saint Pierre, A., Schurmann, C., Seshadri, S., Sjögren, K., Slagboom, P.E., Strickler, H.D., Stumvoll, M., Suh, Y., Sun, Q., Zhang, C., Svensson, J., Tanaka, T., Tare, A., Tönjes, A., Uh, H.-W., van Duijn, C., van Heemst, D., Vandenput, L., Vasan, R.S., Völker, U., Willems, S.M., Ohlsson, C., Wallaschofski, H., Kaplan, R.C. (2016):
  Genomewide meta‐analysis identifies loci associated with IGF‐I and IGFBP‐3 levels with impact on age‐related traits
  Aging Cell 15 (5), 811 - 824 10.1111/acel.12490
• Tiedt, O., Mergelsberg, M., Boll, K., Müller, M., Adrian, L., Jehmlich, N., von Bergen, M., Boll, M. (2016):
  ATP-dependent C–F bond cleavage allows the complete degradation of 4-fluoroaromatics without oxygen
  mBio 7 (4), e00990-16 10.1128/mBio.00990-16
• Warnke, M., Jung, T., Dermer, J., Hipp, K., Jehmlich, N., von Bergen, M., Ferlaino, S., Fries, A., Müller, M., Boll, M. (2016):
  25-hydroxyvitamin D₃ synthesis by enzymatic steroid side-chain hydroxylation with water
  Angew. Chem.-Int. Edit. 55 (5), 1881 - 1884 10.1002/anie.201510331

2015 (11)

• Bastida, F., García, C., von Bergen, M., Moreno, J.L., Richnow, H.H., Jehmlich, N. (2015):
  Deforestation fosters bacterial diversity and the cyanobacterial community responsible for carbon fixation processes under semiarid climate: a metaproteomics study
  Appl. Soil Ecol. 93 , 65 - 67 10.1016/j.apsoil.2015.04.006
• Daims, H., Lebedeva, E.V., Pjevac, P., Han, P., Herbold, C., Albertsen, M., Jehmlich, N., Palatinszky, M., Vierheilig, J., Bulaev, A., Kirkegaard, R.H., von Bergen, M., Rattei, T., Bendinger, B., Nielsen, P.H., Wagner, M. (2015):
  Complete nitrification by Nitrospira bacteria
  Nature 528 (7583), 504 - 509 10.1038/nature16461
• Goris, T., Schiffmann, C.L., Gadkari, J., Schubert, T., Seifert, J., Jehmlich, N., von Bergen, M., Diekert, G. (2015):
  Proteomics of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates
  Sci. Rep. 5 , art. 13794 10.1038/srep13794
• Grob, C., Taubert, M., Howat, A.M., Burns, O.J., Dixon, J.L., Richnow, H.H., Jehmlich, N., von Bergen, M., Chen, Y., Murrell, J.C. (2015):
  Combining metagenomics with metaproteomics and stable isotope probing reveals metabolic pathways used by a naturally occurring marine methylotroph
  Environ. Microbiol. 17 (10), 4007 - 4018 10.1111/1462-2920.12935
• Hartwig, S., Thomas, C., Krumova, N., Quitzke, V., Türkowsky, D., Jehmlich, N., Adrian, L., Sawers, R.G. (2015):
  Heterologous complementation studies in Escherichia coli with the Hyp accessory protein machinery from Chloroflexi provide insight into [NiFe]-hydrogenase large subunit recognition by the HypC protein family
  Microbiology-(UK) 161 (11), 2204 - 2219 10.1099/mic.0.000177
• Kümmel, S., Herbst, F.-A., Bahr, A., Duarte, M., Pieper, D.H., Jehmlich, N., Seifert, J., von Bergen, M., Bombach, P., Richnow, H.H., Vogt, C. (2015):
  Anaerobic naphthalene degradation by sulfate-reducing Desulfobacteraceae from various anoxic aquifers
  FEMS Microbiol. Ecol. 91 (3), fiv006 10.1093/femsec/fiv006
• Palatinszky, M., Herbold, C., Jehmlich, N., Pogoda, M., Han, P., von Bergen, M., Lagkouvardos, I., Karst, S.M., Galushko, A., Koch, H., Berry, D., Daims, H., Wagner, M. (2015):
  Cyanate as an energy source for nitrifiers
  Nature 524 (7563), 105 - 108 10.1038/nature14856
• Pöritz, M., Schiffmann, C.L., Hause, G., Heinemann, U., Seifert, J., Jehmlich, N., von Bergen, M., Nijenhuis, I., Lechner, U. (2015):
  Dehalococcoides mccartyi strain DCMB5 respires a broad spectrum of chlorinated aromatic compounds
  Appl. Environ. Microb. 81 (2), 587 - 596 10.1128/AEM.02597-14
• Sachsenberg, T., Herbst, F.-A., Taubert, M., Kermer, R., Jehmlich, N., von Bergen, M., Seifert, J., Kohlbacher, O. (2015):
  MetaProSIP: Automated inference of stable isotope incorporation rates in proteins for functional metaproteomics
  J. Proteome Res. 14 (2), 619 - 627 10.1021/pr500245w
• Schaubeck, M., Clavel, T., Lagkouvardos, M., Calasan, J., Haange, S.B., Jehmlich, N., von Bergen, M., Basic, M., Bleich, A., Haller, D. (2015):
  Transmissive Crohn's disease-like ileitis is caused by functional dysbiosis in the intestinal microbiota independent of inflammation-driven Paneth cell failure
  J. Crohns Colitis 9 (Suppl. 1), S1 - S1 10.1093/ecco-jcc/jju027.001
• Seyhan, D., Jehmlich, N., von Bergen, M., Fersch, J., Rother, M. (2015):
  Selenocysteine-independent suppression of UGA codons in the archaeon Methanococcus maripaludis
  Biochim. Biophys. Acta-Gen. Subj. 1850 , 2385 - 2392 10.1016/j.bbagen.2015.07.009