Publikationen
Inhalt:
- 2023 (8)
- 2022 (43)
- 2021 (53)
- 2020 (47)
- 2019 (44)
- 2018 (38)
- 2017 (43)
- 2016 (60)
- 2015 (39)
- 2014 (32)
- 2013 (37)
- 2012 (35)
- 2011 (34)
- 2010 (28)
- 2009 (25)
- 2008 (19)
- 2007 (25)
- 2006 (14)
- 2005 (13)
- 2004 (11)
- 2003 (1)
- 2002 (11)
- 2001 (4)
- 2000 (6)
- 1999 (1)
- 1997 (1)
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2023 (8)
- Engelberts, J.P., Robbins, S.J., Herbold, C.W., Moeller, F.U., Jehmlich, N., Laffy, P.W., Wagner, M., Webster, N.S. (2023):
Metabolic reconstruction of the near complete microbiome of the model sponge Ianthella basta
Environ. Microbiol. 25 (3), 646 - 660
Volltext (DOI) - Gerhards, M., Böhme, A., Schubert, K., Kodritsch, B., Ulrich, N. (2023):
DNA adducts as link between in vitro and in vivo carcinogenicity – A case study with benzo[a]pyrene
Curr. Res. Toxicol. 4 , art. 100097
Volltext (DOI) - Gurbuz, B., Guldiken, N., Reuken, P., Fu, L., Remih, K., Preisinger, C., Brůha, R., Leníček, M., Petrtýl, J., Reissing, J., Aly, M., Fromme, M., Zhou, B., Karkossa, I., Schubert, K., von Bergen, M., Stallmach, A., Bruns, T., Strnad, P. (2023):
Biomarkers of hepatocellular synthesis in patients with decompensated cirrhosis
Hepatol. Int.
Volltext (DOI) - Khan, N., Muge, E., Mulaa, F.J., Wamalwa, B., von Bergen, M., Jehmlich, N., Wick, L.Y. (2023):
Mycelial nutrient transfer promotes bacterial co-metabolic organochlorine pesticide degradation in nutrient-deprived environments
ISME J. 17 , 570 - 578
Volltext (DOI) - Lipaeva, P., Karkossa, I., Bedulina, D., Schubert, K., Luckenbach, T. (2023):
Cold-adapted amphipod species upon heat stress: Proteomic responses and their correlation with transcriptomic responses
Comp. Biochem. Physiol. D-Genomics Proteomics 45 , art. 101048
Volltext (DOI) - O’Rourke, K., Engelmann, B., Altenburger, R., Rolle-Kampczyk, U., Grintzalis, K. (2023):
Molecular responses of daphnids to chronic exposures to pharmaceuticals
Int. J. Mol. Sci. 24 (4), art. 4100
Volltext (DOI) - Uthoff, C., Homsi, M.N., von Bergen, M. (2023):
Acoustic and vibration monitoring of honeybee colonies for beekeeping-relevant aspects of presence of queen bee and swarming
Comput. Electron. Agric. 205 , art. 107589
Volltext (DOI) - Zhang, L., Toplak, M., Saleem-Batcha, R., Höing, L., Jakob, R., Jehmlich, N., von Bergen, M., Maier, T., Teufel, R. (2023):
Bacterial dehydrogenases facilitate oxidative inactivation and bioremediation of chloramphenicol
ChemBioChem 24 (2), e202200632
Volltext (DOI)
2022 (43)
- Brede, M., Haange, S.-B., Riede, S., Engelmann, B., Jehmlich, N., Rolle-Kampczyk, U.E., Rohn, K., Von Soosten, D., von Bergen, M., Breves, G. (2022):
Effects of different formulations of glyphosate on rumen microbial metabolism and microbial community composition in the Rumen Simulation Technique system
Front. Microbiol. 13 , art. 873101
Volltext (DOI) - Buchenauer, L., Junge, K.M., Haange, S.-B., Simon, J.C., von Bergen, M., Hoh, A.-L., Aust, G., Zenclussen, A.C., Stangl, G.I., Polte, T. (2022):
Glyphosate differentially affects the allergic immune response across generations in mice
Sci. Total Environ. 850 , art. 157973
Volltext (DOI) - Dey, P., Malik, A., Singh, D.K., Haange, S.-B., von Bergen, M., Jehmlich, N. (2022):
Insight to the molecular mechanisms underpinning the mycoremediation of multiple metals by proteomic technique
Front. Microbiol. 13 , art. 872576
Volltext (DOI) - Farag, M.A., Hariri, M.L.M., Ehab, A., Homsi, M.N., Zhao, C., von Bergen, M. (2022):
Cocoa seeds and chocolate products interaction with gut microbiota; mining microbial and functional biomarkers from mechanistic studies, clinical trials and 16S rRNA amplicon sequencing
Crit. Rev. Food Sci. Nutr.
Volltext (DOI) - Fernandes, M.L.P., Bastida, F., Jehmlich, N., Martinović, T., Větrovský, T., Baldrian, P., Delgado-Baquerizo, M., Starke, R. (2022):
Functional soil mycobiome across ecosystems
J. Proteomics 252 , art. 104428
Volltext (DOI) - Fries, C.M., Haange, S.-B., Rolle-Kampczyk, U., Till, A., Lammert, M., Grasser, L., Medawar, E., Dietrich, A., Horstmann, A., von Bergen, M., Fenske, W.K. (2022):
Metabolic profile and metabolite analyses in extreme weight responders to gastric bypass surgery
Metabolites 12 (5), art. 417
Volltext (DOI) - Geesink, P., Taubert, M., Jehmlich, N., von Bergen, M., Küsel, K. (2022):
Bacterial necromass is rapidly metabolized by heterotrophic bacteria and supports multiple trophic levels of the groundwater microbiome
Microbiol. Spectr. 10 (4), e00437
Volltext (DOI) - Grosjean, I., Roméo, B., Domdom, M.-A., Belaid, A., D’Andréa, G., Guillot, N., Gherardi, R.K., Gal, J., Milano, G., Marquette, C.H., Hung, R.J., Landi, M.T., Han, Y., Brest, P., von Bergen, M., Klionsky, D.J., Amos, C.I., Hofman, P., Mograbi, B. (2022):
Autophagopathies: from autophagy gene polymorphisms to precision medicine for human diseases
Autophagy 18 (11), 2519 - 2536
Volltext (DOI) - Gwak, J.-H., Awala, S.I., Nguyen, N.-L., Yu, W.-J., Yang, H.-Y., von Bergen, M., Jehmlich, N., Kits, K.D., Loy, A., Dunfield, P.F., Dahl, C., Hyun, J.-H., Rhee, S.-K. (2022):
Sulfur and methane oxidation by a single microorganism
Proc. Natl. Acad. Sci. U.S.A. 119 (32), e2114799119
Volltext (DOI) - Haange, S.-B., Till, A., Bergh, P.-O., Fauler, G., Gigl, M., Löfgren-Sandblom, A., Schaap, F.G., Clavel, T., Trautwein, C., Fenske, W., Kleigrewe, K., Marschall, H.-U., Olde Damink, S.W.M., Moustafa, T., von Bergen, M., Rolle-Kampczyk, U. (2022):
Ring trial on quantitative assessment of bile acids reveals a method- and analyte-specific accuracy and reproducibility
Metabolites 12 (7), art. 583
Volltext (DOI) - Hoeger, A.-L., Jehmlich, N., Kipping, L., Griehl, C., Noll, M. (2022):
Associated bacterial microbiome responds opportunistic once algal host Scenedesmus vacuolatus is attacked by endoparasite Amoeboaphelidium protococcarum
Sci. Rep. 12 , art. 13187
Volltext (DOI) - Jacoby, C., Ebenau-Jehle, C., Saum, K., Jehmlich, N., von Bergen, M., Brüls, T., Boll, M. (2022):
Genes and enzymes involved in the biodegradation of the quaternary carbon compound pivalate in the denitrifying Thauera humireducens strain PIV-1
Environ. Microbiol. 24 (7), 3181 - 3194
Volltext (DOI) - Jensen Pedersen, K., Haange, S.-B., Žížalová, K., Viehof, A., Clavel, T., Leniček, M., Engelmann, B., Wick, L.Y., Schaap, F.G., Jehmlich, N., Rolle-Kampczyk, U., von Bergen, M. (2022):
Eggerthella lenta DSM 2243 alleviates bile acid stress response in Clostridium ramosum and Anaerostipes caccae by transformation of bile acids
Microorganisms 10 (10), art. 2025
Volltext (DOI) - Junge, K.M., Buchenauer, L., Strunz, S., Seiwert, B., Thürmann, L., Rolle-Kampczyk, U.E., Röder, S., Borte, M., Kiess, W., von Bergen, M., Simon, J.C., Zenclussen, A.C., Schöneberg, T., Stangl, G.I., Herberth, G., Lehmann, I., Reemtsma, T., Polte, T. (2022):
Effects of exposure to single and multiple parabens on asthma development in an experimental mouse model and a prospective cohort study
Sci. Total Environ. 814 , art. 152676
Volltext (DOI) - Kage, P., Schubert, K., Treudler, R., Simon, J.-C., von Bergen, M., Tomm, J. (2022):
Identification of new potential allergens from green-lipped mussel (Perna canaliculus)
Iran. J. Allergy Asthma Immunol. 21 (6), 711 - 715
Volltext (DOI) - Kaplan, A., Zelicha, H., Meir, A.Y., Rinott, E., Tsaban, G., Levakov, G., Prager, O., Salti, M., Yovell, Y., Ofer, J., Huhn, S., Beyer, F., Witte, V., Villringer, A., Meiran, N., Emesh, T.B., Kovacs, P., von Bergen, M., Ceglarek, U., Blüher, M., Stumvoll, M., Hu, F.B., Stampfer, M.J., Friedman, A., Shelef, I., Avidan, G., Shai, I. (2022):
The effect of a high-polyphenol Mediterranean diet (Green-MED) combined with physical activity on age-related brain atrophy: the Dietary Intervention Randomized Controlled Trial Polyphenols Unprocessed Study (DIRECT PLUS)
Am. J. Clin. Nutr. 115 (5), 1270 - 1281
Volltext (DOI) - Kipping, L., Gossner, M.M., Koschorreck, M., Muszynski, S., Maurer, F., Weiser, W., Jehmlich, N., Noll, M. (2022):
Emission of CO2 and CH4 from 13 deadwood tree species is linked to tree species identity and management intensity in forest and grassland habitats
Glob. Biogeochem. Cycles 36 (5), e2021GB007143
Volltext (DOI) - Kipping, L., Maurer, F., Gossner, M.M., Muszynski, S., Kahl, T., Kellner, H., Weiser, W.W., Jehmlich, N., Noll, M. (2022):
Drivers of deadwood decay of 13 temperate tree species are similar between forest and grassland habitats
Front. For. Glob. Change 5 , art. 1020737
Volltext (DOI) - König, R., Kiebist, J., Kalmbach, J., Herzog, R., Schmidtke, K.-U., Kellner, H., Ullrich, R., Jehmlich, N., Hofrichter, M., Scheibner, K. (2022):
Novel unspecific peroxygenase from Truncatella angustata catalyzes the synthesis of bioactive lipid mediators
Microorganisms 10 (7), art. 1267
Volltext (DOI) - Kraft, B., Jehmlich, N., Larsen, M., Bristow, L.A., Könneke, M., Thamdrup, B., Canfield, D.E. (2022):
Oxygen and nitrogen production by an ammonia-oxidizing archaeon
Science 375 (6576), 97 - 100
Volltext (DOI) - Krause, J.L., Engelmann, B., Nunes da Rocha, U., Pierzchalski, A., Chang, H.D., Zenclussen, A.C., von Bergen, M., Rolle-Kampczyk, U., Herberth, G. (2022):
MAIT cell activation is reduced by direct and microbiota-mediated exposure to bisphenols
Environ. Int. 158 , art. 106985
Volltext (DOI) - Krieg, L., Didt, K., Karkossa, I., Bernhart, S.H., Kehr, S., Subramanian, N., Lindhorst, A., Schaudinn, A., Tabei, S., Keller, M., Stumvoll, M., Dietrich, A., von Bergen, M., Stadler, P.F., Laurencikiene, J., Krüger, M., Blüher, M., Gericke, M., Schubert, K., Kovacs, P., Chakaroun, R., Massier, L. (2022):
Multiomics reveal unique signatures of human epiploic adipose tissue related to systemic insulin resistance
Gut 71 (11), 2179 - 2193
Volltext (DOI) - Lentz, L.S., Stutz, A.J., Meyer, N., Schubert, K., Karkossa, I., von Bergen, M., Zenclussen, A.C., Schumacher, A. (2022):
Human chorionic gonadotropin promotes murine Treg cells and restricts pregnancy-harmful proinflammatory Th17 responses
Front. Immunol. 13 , art. 989247
Volltext (DOI) - Menanteau-Ledouble, S., Skov, J., Lukassen, M.B., Rolle-Kampczyk, U., Haange, S.-B., Dalsgaard, I., von Bergen, M., Nielsen, J.L. (2022):
Modulation of gut microbiota, blood metabolites, and disease resistance by dietary β-glucan in rainbow trout (Oncorhynchus mykiss)
Animal Microbiome 4 , art. 358
Volltext (DOI) - Münzker, J., Haase, N., Till, A., Sucher, R., Haange, S.-B., Nemetschke, L., Gnad, T., Jäger, E., Chen, J., Riede, S.J., Chakaroun, R., Massier, L., Kovacs, P., Ost, M., Rolle-Kampczyk, U., Jehmlich, N., Weinert, J., Heiker, J.T., Klöting, N., Seeger, G., Morawski, M., Keitel, V., Pfeifer, A., von Bergen, M., Heeren, J., Krügel, U., Fenske, W.K. (2022):
Functional changes of the gastric bypass microbiota reactivate thermogenic adipose tissue and systemic glucose control via intestinal FXR-TGR5 crosstalk in diet-induced obesity
Microbiome 10 , art. 96
Volltext (DOI) - Murthy, S., Karkossa, I., Schmidt, C., Hoffmann, A., Hagemann, T., Rothe, K., Seifert, O., Anderegg, U., von Bergen, M., Schubert, K., Rossol, M. (2022):
Danger signal extracellular calcium initiates differentiation of monocytes into SPP1/osteopontin-producing macrophages
Cell Death Dis. 13 , art. 53
Volltext (DOI) - Nagel, M., Moretti, R., Paschke, R., von Bergen, M., Meiler, J., Kalkhof, S. (2022):
Integrative model of the FSH receptor reveals the structural role of the flexible hinge region
Structure 30 (10), 1424 - 1431.e3
Volltext (DOI) - Puiggené, Ò., Cárdenas Espinosa, M.J., Schlosser, D., Thies, S., Jehmlich, N., Kappelmeyer, U., Schreiber, S., Wibberg, D., Kalinowski, J., Harms, H., Heipieper, H.J., Eberlein, C. (2022):
Extracellular degradation of a polyurethane oligomer involving outer membrane vesicles and further insights on the degradation of 2,4-diaminotoluene in Pseudomonas capeferrum TDA1
Sci. Rep. 12 , art. 2666
Volltext (DOI) - Riesbeck, S., Petruschke, H., Rolle-Kampczyk, U., Schori, C., Ahrens, C.H., Eberlein, C., Heipieper, H.J., von Bergen, M., Jehmlich, N. (2022):
Adaptation and resistance: How Bacteroides thetaiotaomicron copes with the bisphenol A substitute bisphenol F
Microorganisms 10 (8), art. 1610
Volltext (DOI) - Saborowski, R., Korez, Š., Riesbeck, S., Weidung, M., Bickmeyer, U., Gutow, L. (2022):
Shrimp and microplastics: A case study with the Atlantic ditch shrimp Palaemon varians
Ecotox. Environ. Safe. 234 , art. 113394
Volltext (DOI) - Sallam, I.E., Rolle-Kampczyk, U., Schäpe, S.S., Zaghloul, S.S., El Dine, R.S., Shao, P., von Bergen, M., Farag, M.A. (2022):
Evaluation of antioxidant activity and biotransformation of Opuntia ficus fruit: The effect of in vitro and ex vivo gut microbiota metabolism
Molecules 27 (21), art. 7568
Volltext (DOI) - Schaffert, A., Karkossa, I., Ueberham, E., Schlichting, R., Walter, K., Arnold, J., Blüher, M., Heiker, J.T., Lehmann, J., Wabitsch, M., Escher, B.I., von Bergen, M., Schubert, K. (2022):
Di-(2-ethylhexyl) phthalate substitutes accelerate human adipogenesis through PPARγ activation and cause oxidative stress and impaired metabolic homeostasis in mature adipocytes
Environ. Int. 164 , art. 107279
Volltext (DOI) - Scholz, S., Brack, W., Escher, B.I., Hackermüller, J., Liess, M., von Bergen, M., Wick, L.Y., Zenclussen, A.C., Altenburger, R. (2022):
The EU chemicals strategy for sustainability: an opportunity to develop new approaches for hazard and risk assessment
Arch. Toxicol. 96 (8), 2381 - 2386
Volltext (DOI) - Scholz, S., Nichols, J.W., Escher, B.I., Ankley, G.T., Altenburger, R., Blackwell, B., Brack, W., Burkhard, L., Collette, T.W., Doering, J.A., Ekman, D., Fay, K., Fischer, F., Hackermüller, J., Hoffman, J.C., Lai, C., Leuthold, D., Martinovic-Weigelt, D., Reemtsma, T., Pollesch, N., Schroeder, A., Schüürmann, G., von Bergen, M. (2022):
The eco‐exposome concept: Supporting an integrated assessment of mixtures of environmental chemicals
Environ. Toxicol. Chem. 41 (1), 30 - 45
Volltext (DOI) - Schöne, C., Poehlein, A., Jehmlich, N., Adlung, N., Daniel, R., von Bergen, M., Scheller, S., Rother, M. (2022):
Deconstructing Methanosarcina acetivorans into an acetogenic archaeon
Proc. Natl. Acad. Sci. U.S.A. 119 (2), e2113853119
Volltext (DOI) - Schroeter, S.A., Eveillard, D., Chaffron, S., Zoppi, J., Kampe, B., Lohmann, P., Jehmlich, N., von Bergen, M., Sanchez-Arcos, C., Pohnert, G., Taubert, M., Küsel, K., Gleixner, G. (2022):
Microbial community functioning during plant litter decomposition
Sci. Rep. 12 , art. 7451
Volltext (DOI) - Starke, R., Fiore-Donno, A.M., White III, R.A., Parente Fernandes, M.L., Martinović, T., Bastida, F., Delgado-Baquerizo, M., Jehmlich, N. (2022):
Biomarker metaproteomics for relative taxa abundances across soil organisms
Soil Biol. Biochem. 175 , art. 108861
Volltext (DOI) - Taubert, M., Overholt, W.A., Heinze, B.M., Matanfack, G.A., Houhou, R., Jehmlich, N., von Bergen, M., Rösch, P., Popp, J., Küsel, K. (2022):
Bolstering fitness via CO2 fixation and organic carbon uptake: mixotrophs in modern groundwater
ISME J. 16 (4), 1153 - 1162
Volltext (DOI) - Torow, N., Li, R., Hitch, T., Mingels, C., Al Bounny, S., van Best, N., Stange, E.-L., Benabid, A., Rüttger, L., Gadermayr, M., Runge, S., Treichel, N., Merhof, D., Rosshart, S., Jehmlich, N., von Bergen, M., Heymann, F., Clavel, T., Tacke, F., Lelouard, H., Costa, I. (2022):
Neonatal Peyer's patch cDC activation as a pacemaker of postnatal immune maturation
Eur. J. Immunol. 52 (S1), 52 - 52
Volltext (DOI) - Uthoff, C., Ruxton, G. (2022):
Local weather conditions affect forager size and visitation rate on bramble flowers (Rubus fruticosus) in bumble bees (Bombus spp)
J. Insect Behav. 35 (1-4), 17 - 30
Volltext (DOI) - Velandia-Huerto, C.A., Yazbeck, A.M., Schor, J., Stadler, P.F. (2022):
Evolution and phylogeny of microRNAs — Protocols, pitfalls, and problems
In: Allmer, J., Yousef, M. (eds.)
miRNomics. MicroRNA biology and computational analysis
Methods in Molecular Biology 2257
Springer Nature, p. 211 - 233
Volltext (DOI) - Völkner, M., Wagner, F., Steinheuer, L.M., Carido, M., Kurth, T., Yazbeck, A., Schor, J., Wieneke, S., Ebner, L.J.A., Del Toro Runzer, C., Taborsky, D., Zoschke, K., Vogt, M., Canzler, S., Hermann, A., Khattak, S., Hackermüller, J., Karl, M.O. (2022):
HBEGF-TNF induce a complex outer retinal pathology with photoreceptor cell extrusion in human organoids
Nat. Commun. 13 , art. 6183
Volltext (DOI) - Warrick, P.A., Lostanlen, V., Eickenberg, M., Homsi, M.N., Rodríguez, A.C., Andén, J. (2022):
Arrhythmia classification of 12-lead and reduced-lead electrocardiograms via recurrent networks, scattering, and phase harmonic correlation
Physiol. Meas. 43 (9), art. 094002
Volltext (DOI)
2021 (53)
- Anders, J., Petruschke, H., Jehmlich, N., Haange, S.-B., von Bergen, M., Stadler, P.F. (2021):
A workflow to identify novel proteins based on the direct mapping of peptide-spectrum-matches to genomic locations
BMC Bioinformatics 22 , art. 277
Volltext (DOI) - Bastida, F., Jehmlich, N., Starke, R., Benndorf, D., López-Mondéjar, R., Plaza, C., Freixino, Z., Ramírez-Ortuño, C., Ruiz-Navarro, A., Díaz-López, M., Vera, A., Moreno, J.L., Eldridge, D.J., García, C., Delgado-Baquerizo, M. (2021):
Structure and function of bacterial metaproteomes across biomes
Soil Biol. Biochem. 160 , art. 108331
Volltext (DOI) - Bedulina, D., Drozdova, P., Gurkov, A., von Bergen, M., Stadler, P.F., Luckenbach, T., Timofeyev, M., Kalkhof, S. (2021):
Proteomics reveals sex-specific heat shock response of Baikal amphipod Eulimnogammarus cyaneus
Sci. Total Environ. 763 , art. 143008
Volltext (DOI) - Chen, J., Haase, N., Haange, S.-B., Sucher, R., Münzker, J., Jäger, E., Schischke, K., Seyfried, F., von Bergen, M., Hankir, M.K., Krügel, U., Fenske, W.K. (2021):
Roux-en-Y gastric bypass contributes to weight loss-independent improvement in hypothalamic inflammation and leptin sensitivity through gut-microglia-neuron-crosstalk
Mol. Metab. 48 , art. 101214
Volltext (DOI) - Engel, K.M., Baumann, S., Blaurock, J., Rolle-Kampczyk, U., Schiller, J., von Bergen, M., Grunewald, S. (2021):
Differences in the sperm metabolomes of smoking and nonsmoking men
Biol. Reprod. 105 (6), 1484 - 1493
Volltext (DOI) - Farag, M.A., von Bergen, M., Saleh, B.M., Homsi, M.N., Abd El-Al, M.S. (2021):
How do green and black coffee brews and bioactive interaction with gut microbiome affect its health outcomes? Mining evidence from mechanistic studies, metagenomics and clinical trials
Trends Food Sci. Technol. 118 (Part B), 920 - 937
Volltext (DOI) - Frissen, M., Liao, L., Schneider, K.M., Djudjaj, S., Haybaeck, J., Wree, A., Rolle-Kampczyk, U., von Bergen, M., Latz, E., Boor, P., Trautwein, C. (2021):
Bidirectional role of NLRP3 during acute and chronic cholestatic liver injury
Hepatology 73 (5), 1836 - 1854
Volltext (DOI) - Genath, A., Petruschke, H., von Bergen, M., Einspanier, R. (2021):
Influence of formic acid treatment on the proteome of the ectoparasite Varroa destructor
PLOS One 16 (10), e0258845
Volltext (DOI) - Greiner–Haas, F., von Bergen, M., Sawers, R.G., Lechner, U., Türkowsky, D. (2021):
Changes of the proteome and acetylome during transition into the stationary phase in the organohalide-respiring Dehalococcoides mccartyi strain CBDB1
Microorganisms 9 (2), art. 365
Volltext (DOI) - Großkopf, H., Vogel, S., Müller, C.D., Köhling, S., Dürig, J.-N., Möller, S., Schnabelrauch, M., Rademann, J., Hempel, U., von Bergen, M., Schubert, K. (2021):
Identification of intracellular glycosaminoglycan-interacting proteins by affinity purification mass spectrometry
Biol. Chem. 402 (11), 1427 - 1440
Volltext (DOI) - Großkopf, H., Walter, K., Karkossa, I., von Bergen, M., Schubert, K. (2021):
Non-genomic AhR-signaling modulates the immune response in endotoxin-activated macrophages after activation by the environmental stressor BaP
Front. Immunol. 12 , art. 620270
Volltext (DOI) - Höper, T., Siewert, K., Dumit, V.I., von Bergen, M., Schubert, K., Haase, A. (2021):
The contact allergen NiSO4 triggers a distinct molecular response in primary human dendritic cells compared to bacterial LPS
Front. Immunol. 12 , art. 644700
Volltext (DOI) - Ismail, W.S., Homsi, M.N. (2021):
Recent advances and challenges of Arabic why question answering systems
In: Abu Talib, M., Benhlima, L., El Maghraoui, K. (eds.)
ArabWIC 2021: 7th Annual International Conference on Arab Women in Computing in Conjunction with the 2nd Forum of Women in Research, August 25, 2021, Sharjah, United Arab Emirates and virtually
Association for Computing Machinery, New York, NY, p. 1 - 7, art. 13
Volltext (URL) - Junge, K.M., Buchenauer, L., Elter, E., Butter, K., Kohajda, T., Herberth, G., Röder, S., Borte, M., Kiess, W., von Bergen, M., Simon, J.C., Rolle-Kampczyk, U.E., Lehmann, I., Gminski, R., Ohlmeyer, M., Polte, T. (2021):
Wood emissions and asthma development: Results from an experimental mouse model and a prospective cohort study
Environ. Int. 151 , art. 106449
Volltext (DOI) - Karkossa, I., Bannuscher, A., Hellack, B., Wohlleben, W., Laloy, J., Stan, M.S., Dinischiotu, A., Wiemann, M., Luch, A., Haase, A., von Bergen, M., Schubert, K. (2021):
Omics reveal different oxidative stress levels induced by nanomaterials in vitro and in vivo
Toxicol. Lett. 350 (Suppl.), S125
Volltext (DOI) - Karkossa, I., Bannuscher, A., Hellack, B., Wohlleben, W., Laloy, J., Stan, M.S., Dinischiotu, A., Wiemann, M., Luch, A., Haase, A., von Bergen, M., Schubert, K. (2021):
Nanomaterials induce different levels of oxidative stress, depending on the used model system: Comparison of in vitro and in vivo effects
Sci. Total Environ. 801 , art. 149538
Volltext (DOI) - Kasmanas, J.C., Bartholomäus, A., Borim Corrêa, F., Tal, T., Jehmlich, N., Herberth, G., von Bergen, M., Stadler, P.F., de Carvalho, A.C.P.L.F., Nunes da Rocha, U. (2021):
HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes
Nucleic Acids Res. 49 (D1), D743 - D750
Volltext (DOI) - Kimani, V., Ullrich, R., Büttner, E., Herzog, R., Kellner, H., Jehmlich, N., Hofrichter, M., Liers, C. (2021):
First dye-decolorizing peroxidase from an ascomycetous fungus secreted by Xylaria grammica
Biomolecules 11 (9), art. 1391
Volltext (DOI) - Kruse, S., Türkowsky, D., Birkigt, J., Matturro, B., Franke, S., Jehmlich, N., von Bergen, M., Westermann, M., Rossetti, S., Nijenhuis, I., Adrian, L., Diekert, G., Goris, T. (2021):
Interspecies metabolite transfer and aggregate formation in a co-culture of Dehalococcoides and Sulfurospirillum dehalogenating tetrachloroethene to ethene
ISME J. 15 (6), 1794 - 1809
Volltext (DOI) - Le Duc, D., Lin, C.-C., Popkova, Y., Yang, Z., Akhil, V., Çakir, M.V., Grunewald, S., Simon, J.-C., Dietz, A., Dannenberger, D., Garten, A., Lemke, J.R., Schiller, J., Blüher, M., Nono Nankam, P.A., Rolle-Kampczyk, U., von Bergen, M., Kelso, J., Schöneberg, T. (2021):
Reduced lipolysis in lipoma phenocopies lipid accumulation in obesity
Int. J. Obes. 45 (3), 565 - 576
Volltext (DOI) - Li, Q., Cooper, R.E., Wegner, C.-E., Taubert, M., Jehmlich, N., von Bergen, M., Küsel, K. (2021):
Insights into autotrophic activities and carbon flow in iron-rRich pelagic aggregates (iron snow)
Microorganisms 9 (7), art. 1368
Volltext (DOI) - Lovera, F.A., Cardinale, Y., Buscaldi, D., Charnois, T., Homsi, M.N. (2021):
Deep learning enhanced with graph knowledge for sentiment analysis
X-SENTIMENT 2021: Sixth International Workshop on eXplainable SENTIment Mining and EmotioN deTection, June 07, 2021, Hersonissos, Greece
Volltext (URL) - Lovera, F.A., Cardinale, Y.C., Homsi, M.N. (2021):
Sentiment analysis in twitter based on knowledge graph and deep learning classification
Electronics 10 (22), art. 2739
Volltext (DOI) - Medawar, E., Haange, S.-B., Rolle-Kampczyk, U., Engelmann, B., Dietrich, A., Thieleking, R., Wiegank, C., Fries, C., Horstmann, A., Villringer, A., von Bergen, M., Fenske, W., Witte, A.V. (2021):
Gut microbiota link dietary fiber intake and short-chain fatty acid metabolism with eating behavior
Transl. Psychiatr. 11 , art. 500
Volltext (DOI) - Monikh, F.A., Chupani, L., Karkossa, I., Gardian, Z., Arenas-Logo, D., von Bergen, M., Schubert, K., Piackova, V., Zuskova, E., Jiskoot, W., Vijver, M.G., Peijnenburg, W.J.G.M. (2021):
An environmental ecocorona influences the formation and evolution of the biological corona on the surface of single-walled carbon nanotubes
NanoImpact 22 , art. 100315
Volltext (DOI) - Müller-Deile, J., Sarau, G., Kotb, A., Daniel, C., Kalkhof, S., Christiansen, S., Schiffer, M. (2021):
Novel diagnostic and therapeutic techniques reveal changed metabolomic profile in recurrent focal segmental glomerulosclerosis
Nephrol. Dial. Transplant. 36 (Suppl. 1), art. 7286
Volltext (DOI) - Müller-Deile, J., Sarau, G., Kotb, A.M., Jaremenko, C., Rolle-Kampczyk, U.E., Daniel, C., Kalkhof, S., Christiansen, S.H., Schiffer, M. (2021):
Novel diagnostic and therapeutic techniques reveal changed metabolic profiles in recurrent focal segmental glomerulosclerosis
Sci. Rep. 11 , art. 4577
Volltext (DOI) - Nickel, S., Vlaic, S., Christ, M., Schubert, K., Henschler, R., Tautenhahn, F., Burger, C., Kühne, H., Erler, S., Roth, A., Wild, C., Brach, J., Hammad, S., Gittel, C., Baunack, M., Lange, U., Broschewitz, J., Stock, P., Metelmann, I., Bartels, M., Pietsch, U.-C., Krämer, S., Eichfeld, U., von Bergen, M., Dooley, S., Tautenhahn, H.-M., Christ, B. (2021):
Mesenchymal stromal cells mitigate liver damage after extended resection in the pig by modulating thrombospondin-1/TGF-β
npj Regen. Med. 6 , art. 84
Volltext (DOI) - Petruschke, H., Schori, C., Canzler, S., Riesbeck, S., Poehlein, A., Daniel, R., Frei, D., Segessemann, T., Zimmerman, J., Marinos, G., Kaleta, C., Jehmlich, N., Ahrens, C.H., von Bergen, M. (2021):
Discovery of novel community-relevant small proteins in a simplified human intestinal microbiome
Microbiome 9 , art. 55
Volltext (DOI) - Rughöft, S., Jehmlich, N., Gutierrez, T., Kleindienst, S. (2021):
Comparative proteomics of Marinobacter sp. TT1 reveals corexit impacts on hydrocarbon metabolism, chemotactic motility, and biofilm formation
Microorganisms 9 (1), art. 3
Volltext (DOI) - Sallam, I.E., Abdelwareth, A., Attia, H., Aziz, R.K., Homsi, M.N., von Bergen, M., Farag, M.A. (2021):
Effect of gut microbiota biotransformation on dietary tannins and human health implications
Microorganisms 9 (5), art. 965
Volltext (DOI) - Schaffert, A., Arnold, J., Karkossa, I., Blüher, M., von Bergen, M., Schubert, K. (2021):
The emerging plasticizer alternative DINCH and its metabolite MINCH induce oxidative stress and enhance inflammatory responses in human THP-1 macrophages
Cells 10 (9), art. 2367
Volltext (DOI) - Schaffert, A., Krieg, L., Weiner, J., Schlichting, R., Ueberham, E., Karkossa, I., Bauer, M., Landgraf, K., Junge, K.M., Wabitsch, M., Lehmann, J., Escher, B.I., Zenclussen, A.C., Körner, A., Blüher, M., Heiker, J.T., von Bergen, M., Schubert, K. (2021):
Alternatives for the worse: Molecular insights into adverse effects of bisphenol a and substitutes during human adipocyte differentiation
Environ. Int. 156 , art. 106730
Volltext (DOI) - Schaffert, A., Krieg, L., Weinert, J., Schlichting, R., Ueberham, E., Karkossa, I., Bauer, M., Junge, K., Wabitsch, M., Lehmann, J., Escher, B.I., Zenclussen, A.C., Körner, A., Blüher, M., Heiker, J.T., von Bergen, M., Schubert, K. (2021):
Emerging substitutes of BPA cause inflammation-like state and impaired insulin sensitivity in differentiating human adipocytes
Toxicol. Lett. 350 (Suppl.), S130
Volltext (DOI) - Schubert, K., Karkossa, I., Schor, J., Engelmann, B., Steinheuer, L.M., Bruns, T., Rolle-Kampczyk, U., Hackermüller, J., von Bergen, M. (2021):
A multi-omics analysis of mucosal-associated-invariant T cells reveals key drivers of distinct modes of activation
Front. Immunol. 12 , art. 616967
Volltext (DOI) - Shahid, N., Rolle-Kampczyk, U., Siddique, A., von Bergen, M., Liess, M. (2021):
Pesticide-induced metabolic changes are amplified by food stress
Sci. Total Environ. 792 , art. 148350
Volltext (DOI) - Shiva Nagendra, S.M., Schlink, U., Müller, A., Khare, M. (eds., 2021):
Urban air quality monitoring, modelling and human exposure assessment
Springer Transactions in Civil and Environmental Engineering (STICEE)
Springer Singapore, Singapore, 440 pp.
Volltext (DOI) - Shiva Nagendra, S.M., Schlink, U., Müller, A., Menon, J.S., Chithra, V.S. (2021):
Personal exposure and health risk assessment
In: Shiva Nagendra, S.M., Schlink, U., Müller, A., Khare, M. (eds.)
Urban air quality monitoring, modelling and human exposure assessment
Springer Transactions in Civil and Environmental Engineering (STICEE)
Springer Singapore, Singapore, p. 75 - 87
Volltext (DOI) - Smith, L., Martin, C., Lasserre, F., Engelmann, B., Klément, W., Fougerat, A., Polizzi, A., Canlet, C., Rolle-Kampczyk, U., von Bergen, M., Lippi, Y., Guillou, H., Loiseau, N., Payastre, L., Ellero-Simatos, S. (2021):
Impact d’une exposition alimentaire chronique au glyphosate à des doses de référence sur le microbiote intestinal et le métabolisme énergétique chez la souris
Nutr. Clin. Metab. 35 (1), 74 - 74
Volltext (DOI) - Starke, R., Fernandes, M.L.P., Morais, D.K., Odriozola, I., Baldrian, P., Jehmlich, N. (2021):
Explorative meta-analysis of 417 extant archaeal genomes to predict their contribution to the total microbiome functionality
Microorganisms 9 (2), art. 381
Volltext (DOI) - Starke, R., Schäpe, S.S., Jehmlich, N., von Bergen, M. (2021):
Protein stable isotope probing with H218O differentiated cold stress response at permissive temperatures from general growth at optimal conditions in Escherichia coli K12
Rapid Commun. Mass Spectrom. 35 (1), e8941
Volltext (DOI) - Starke, R., Siles, J.A., Fernandes, M.L.P., Schallert, K., Benndorf, D., Plaza, C., Jehmlich, N., Delgado-Baquerizo, M., Bastida, F. (2021):
The structure and function of soil archaea across biomes
J. Proteomics 237 , art. 104147
Volltext (DOI) - Streidl, T., Karkossa, I., Segura Muñoz, R.R., Eberl, C., Zaufel, A., Plagge, J., Schmaltz, R., Schubert, K., Basic, M., Schneider, K.M., Afify, M., Trautwein, C., Tolba, R., Stecher, B., Doden, H.L., Ridlon, J.M., Ecker, J., Moustafa, T., von Bergen, M., Ramer-Tait, A.E., Clavel, T. (2021):
The gut bacterium Extibacter muris produces secondary bile acids and influences liver physiology in gnotobiotic mice
Gut Microbes 13 (1), 1 - 21
Volltext (DOI) - Thürmann, L., Herberth, G., Seiwert, B., Schlittenbauer, L., Rolle-Kampczyk, U., Röder, S., Sack, U., Borte, M., von Bergen, M., Trump, S., Reemtsma, T., Lehmann, I. (2021):
Prenatal paraben exposure and atopic dermatitis-related outcomes among children
Allergy 76 (10), 3122 - 3132
Volltext (DOI) - Tsaban, G., Meir, A.Y., Rinott, E., Zelicha, H., Kaplan, A., Shalev, A., Katz, A., Rudich, A., Tirosh, A., Shelef, I., Youngster, I., Lebovitz, S., Israeli, N., Shabat, M., Brikner, D., Pupkin, E., Stumvoll, M., Thiery, J., Ceglarek, U., Heiker, J.T., Körner, A., Landgraf, K., von Bergen, M., Blüher, M., Stampfer, M.J., Shai, I. (2021):
The effect of green Mediterranean diet on cardiometabolic risk; a randomised controlled trial
Heart 107 (13), 1054 - 1061
Volltext (DOI) - Van Den Bossche, T., Arntzen, M.Ø., Becher, D., Benndorf, D., Eijsink, V.G.H., Henry, C., Jagtap, P.D., Jehmlich, N., Juste, C., Kunath, B.J., Mesuere, B., Muth, T., Pope, P.B., Seifert, J., Tanca, A., Uzzau, S., Wilmes, P., Hettich, R.L., Armengaud, J. (2021):
The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes
Microbiome 9 , art. 243
Volltext (DOI) - Van Den Bossche, T., Kunath, B.J., Schallert, K., Schäpe, S.S., Abraham, P.E., Armengaud, J., Arntzen, M.Ø., Bassignani, A., Benndorf, D., Fuchs, S., Giannone, R.J., Griffin, T.J., Hagen, L.H., Halder, R., Henry, C., Hettich, R.L., Heyer, R., Jagtap, P., Jehmlich, N., Jensen, M., Juste, C., Kleiner, M., Langella, O., Lehmann, T., Leith, E., May, P., Mesuere, B., Miotello, G., Peters, S.L., Pible, O., Queiros, P.T., Reichl, U., Renard, B.Y., Schiebenhoefer, H., Sczyrba, A., Tanca, A., Trappe, K., Trezzi, J.-P., Uzzau, S., Verschaffelt, P., von Bergen, M., Wilmes, P., Wolf, M., Martens, L., Muth, T. (2021):
Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows
Nat. Commun. 12 , art. 7305
Volltext (DOI) - Venkat, K., Hoyos, M., Haycocks, J.R.J., Cassidy, L., Engelmann, B., Rolle-Kampczyk, U., von Bergen, M., Tholey, A., Grainger, D.C., Papenfort, K. (2021):
A dual-function RNA balances carbon uptake and central metabolism in Vibrio cholerae
Embo J. 40 (24), e108542
Volltext (DOI) - Walter, K., Grosskopf, H., Karkossa, I., von Bergen, M., Schubert, K. (2021):
Proteomic characterization of the cellular effects of AhR activation by microbial tryptophan catabolites in endotoxin-activated human macrophages
Int. J. Environ. Res. Public Health 18 (19), 10336
Volltext (DOI) - Wang, Z., Karkossa, I., Großkopf, H., Canzler, S., Rolle-Kampczyk, U., Hackermüller, J., von Bergen, M., Schubert, K. (2021):
Quantitative proteomics reveal mechanistic insights into direct and indirect drug-induced thyroid toxicity in rats
Toxicol. Lett. 350 (Suppl.), S129
Volltext (DOI) - Warmt, E., Grosser, S., Blauth, E., Xie, X., Kubitschke, H., Stange, R., Sauer, F., Schnauß, J., Tomm, J.M., von Bergen, M., Käs, J.A. (2021):
Differences in cortical contractile properties between healthy epithelial and cancerous mesenchymal breast cells
New J. Phys. 23 (10), art. 103020
Volltext (DOI) - Warrick, P.A., Lostanlen, V., Eickenberg, M., Homsi, M.N., Rodríguez, A.C., Andén, J. (2021):
Arrhythmia classification of reduced-lead electrocardiograms by scattering-recurrent networks
Computing in Cardiology 48 , 1 - 4
Volltext (DOI) - Yaskolka Meir, A., Tuohy, K., von Bergen, M., Krajmalnik-Brown, R., Heinig, U., Zelicha, H., Tsaban, G., Rinott, E., Kaplan, A., Aharoni, A., Zeibich, L., Chang, D., Dirks, B., Diotallevi, C., Arapitsas, P., Vrhovsek, U., Ceglarek, U., Haange, S.-B., Rolle-Kampczyk, U., Engelmann, B., Lapidot, M., Colt, M., Sun, Q., Shai, I. (2021):
The metabolomic-gut-clinical axis of Mankai plant-derived dietary polyphenols
Nutrients 13 (6), art. 1866
Volltext (DOI)
2020 (47)
- Ananbeh, H., Merlos Rodrigo, M.A., Jelinkova, P., Strmiska, V., Splichal, Z., Jehmlich, N., Michalkova, H., Stojanović, M., Voberkova, S., Adam, V., Moulick, A. (2020):
Soil protein as a potential antimicrobial agent against methicillin-resistant Staphylococcus aureus
Environ. Res. 188 , art. 109320
Volltext (DOI) - Balogh, G., Bernhart, S.H., Stadler, P.F., Schor, J. (2020):
A probabilistic version of Sankoff’s maximum parsimony algorithm
J. Bioinform. Comput. Biol. 18 (1), art. 2050004
Volltext (DOI) - Bannuscher, A., Karkossa, I., Buhs, S., Nollau, P., Kettler, K., Balas, M., Dinischiotu, A., Hellack, B., Wiemann, M., Luch, A., von Bergen, M., Haase, A., Schubert, K. (2020):
A multi-omics approach reveals mechanisms of nanomaterial toxicity and structure–activity relationships in alveolar macrophages
Nanotoxicology 14 (2), 181 - 195
Volltext (DOI) - Canzler, S., Hackermüller, J. (2020):
multiGSEA: a GSEA-based pathway enrichment analysis for multi-omics data
BMC Bioinformatics 21 , art. 561
Volltext (DOI) - Canzler, S., Schor, J., Busch, W., Schubert, K., Rolle-Kampczyk, U.E., Seitz, H., Kamp, H., von Bergen, M., Buesen, R., Hackermüller, J. (2020):
Prospects and challenges of multi‑omics data integration in toxicology
Arch. Toxicol. 94 (2), 371 - 388
Volltext (DOI) - Dey, P., Malik, A., Mishra, A., Singh, D.K., von Bergen, M., Jehmlich, N. (2020):
Mechanistic insight to mycoremediation potential of a metal resistant fungal strain for removal of hazardous metals from multimetal pesticide matrix
Environ. Pollut. 262 , art. 114255
Volltext (DOI) - Ernst, J., Gert, K., Kraus, F.B., Rolle-Kampczyk, U.E., Wabitsch, M., Dehghani, F., Schaedlich, K. (2020):
Androstenedione changes steroidogenic activity of SGBS cells
Endocr. Connect. 9 (7), 587 - 598
Volltext (DOI) - Farag, M.A., Abdelwareth, A., Sallam, I.E., el Shorbagi, M., Jehmlich, N., Fritz, K., Schaepe, S., Rolle-Kampczyk, U., Ehrlich, A., Wessjohann, L.A., von Bergen, M. (2020):
Metabolomics reveals impact of seven functional foods on metabolic pathways in a gut microbiota model
J. Adv. Res. 23 , 47 - 59
Volltext (DOI) - Friedrich, M., Wiedemann, K., Reiche, K., Puppel, S.-H., Pfeifer, G., Zipfel, I., Binder, S., Köhl, U., Müller, G.A., Engeland, K., Aigner, A., Füssel, S., Fröhner, M., Peitzsch, C., Dubrovska, A., Rade, M., Christ, S., Schreiber, S., Hackermüller, J., Lehmann, J., Toma, M.I., Muders, M.H., Sommer, U., Baretton, G.B., Wirth, M., Horn, F. (2020):
The role of lncRNAs TAPIR-1 and -2 as diagnostic markers and potential therapeutic targets in prostate cancer
Cancers 12 (5), art. 1122
Volltext (DOI) - Fritz-Wallace, K., Engelmann, B., Krause, J.L., Schäpe, S.S., Pöppe, J., Herberth, G., Rösler, U., Jehmlich, N., von Bergen, M., Rolle-Kampczyk, U. (2020):
Quantification of glyphosate and AMPA from microbiome reactor fluids
Rapid Commun. Mass Spectrom. 34 (7), e8668
Volltext (DOI) - Haange, S.-B., Groeger, N., Froment, J., Rausch, T., Burkhardt, W., Gonnermann, S., Braune, A., Blaut, M., von Bergen, M., Rolle-Kampczyk, U. (2020):
Multiplexed quantitative assessment of the fate of taurine and sulfoquinovose in the intestinal microbiome
Metabolites 10 (11), art. 430
Volltext (DOI) - Haange, S.-B., Jehmlich, N., Krügel, U., Hintschich, C., Wehrmann, D., Hankir, M., Seyfried, F., Froment, J., Hübschmann, T., Müller, S., Wissenbach, D.K., Kang, K.H., Buettner, C., Panagiotou, G., Noll, M., Rolle-Kampczyk, U., Fenske, W., von Bergen, M. (2020):
Gastric bypass surgery in a rat model alters the community structure and functional composition of the intestinal microbiota independently of weight loss
Microbiome 8 , art. 13
Volltext (DOI) - Hsu, M.-J., Karkossa, I., Schäfer, I., Christ, M., Kühne, H., Schubert, K., Rolle-Kampczyk, U.E., Kalkhof, S., Nickel, S., Seibel, P., von Bergen, M., Christ, B. (2020):
Mitochondrial transfer by human mesenchymal stromal cells ameliorates hepatocyte lipid load in a mouse model of NASH
Biomedicines 8 (9), art. 350
Volltext (DOI) - Jacoby, C., Krull, J., Andexer, J., Jehmlich, N., von Bergen, M., Brüls, T., Boll, M. (2020):
Channeling C1 metabolism toward S-adenosylmethionine-dependent conversion of estrogens to androgens in estrogen-degrading bacteria
mBio 11 (4), e01259-20
Volltext (DOI) - Jakobs, G., Krüger, J., Schüttler, A., Altenburger, R., Busch, W. (2020):
Mixture toxicity analysis in zebrafish embryo a time and concentration resolved study on mixture effect predictivity
Environ. Sci. Eur. 32 , art. 143
Volltext (DOI) - Kalkhof, S., Krieg, L., Büttner, P., Wabitsch, M., Küntzel, C., Friebe, D., Landgraf, K., Hanschkow, M., Schubert, K., Kiess, W., Krohn, K., Blüher, M., von Bergen, M., Körner, A. (2020):
In depth quantitative proteomic and transcriptomic characterization of human adipocyte differentiation using the SGBS cell line
Proteomics 20 (15-16), art. 1900405
Volltext (DOI) - Karkossa, I., Raps, S., von Bergen, M., Schubert, K. (2020):
Systematic review of multi-omics approaches to investigate toxicological effects in macrophages
Int. J. Mol. Sci. 21 (24), art. 9371
Volltext (DOI) - Kipping, L., Holzscheck, N., Maurer, F., Muszynski, S., Noll, M., Jehmlich, N. (2020):
Microbial metaproteome data from decayed beech dead wood
Data Brief 29 , art. 105285
Volltext (DOI) - Krämer, S., Busch, W., Schüttler, A. (2020):
A self-organizing map of the fathead minnow liver transcriptome to identify consistent toxicogenomic patterns across chemical fingerprints
Environ. Toxicol. Chem. 39 (3), 526 - 537
Volltext (DOI) - Krause, J.L., Haange, S.-B., Schäpe, S.S., Engelmann, B., Rolle-Kampczyk, U., Fritz-Wallace, K., Wang, Z., Jehmlich, N., Türkowsky, D., Schubert, K., Pöppe, J., Bote, K., Rösler, U., Herberth, G., von Bergen, M. (2020):
The glyphosate formulation Roundup® LB plus influences the global metabolome of pig gut microbiota in vitro
Sci. Total Environ. 745 , art. 140932
Volltext (DOI) - Krause, J.L., Schaepe, S.S., Fritz-Wallace, K., Engelmann, B., Rolle-Kampczyk, U., Kleinsteuber, S., Schattenberg, F., Liu, Z., Müller, S., Jehmlich, N., von Bergen, M., Herberth, G. (2020):
Following the community development of SIHUMIx – a new intestinal in vitro model for bioreactor use
Gut Microbes 11 (4), 1116 - 1129
Volltext (DOI) - Krause, J.L., Schäpe, S.S., Schattenberg, F., Müller, S., Ackermann, G., Rolle-Kampczyk, U.E., Jehmlich, N., Pierzchalski, A., von Bergen, M., Herberth, G. (2020):
The activation of mucosal-associated invariant T (MAIT) cells is affected by microbial diversity and riboflavin utilization in vitro
Front. Microbiol. 11 , art. 755
Volltext (DOI) - Kreuz, M., Otto, D.J., Fuessel, S., Blumert, C., Bertram, C., Bartsch, S., Loeffler, D., Puppel, S.-H., Rade, M., Buschmann, T., Christ, S., Erdmann, K., Friedrich, M., Froehner, M., Muders, M.H., Schreiber, S., Specht, M., Toma, M.I., Benigni, F., Freschi, M., Gandaglia, G., Briganti, A., Baretton, G.B., Loeffler, M., Hackermüller, J., Reiche, K., Wirth, M., Horn, F. (2020):
ProstaTrend—A multivariable prognostic RNA expression score for aggressive prostate cancer
Eur. Urol. 78 (3), 452 - 459
Volltext (DOI) - Krieg, L., Schaffert, A., Kern, M., Landgraf, K., Wabitsch, M., Beck-Sickinger, A.G., Koerner, A., Blüher, M., von Bergen, M., Schubert, K. (2020):
An MRM-based multiplexed quantification assay for human adipokines and apolipoproteins
Molecules 25 (4), art. 775
Volltext (DOI) - Leppert, B., Strunz, S., Seiwert, B., Schlittenbauer, L., Schlichting, R., Pfeifer, C., Röder, S., Bauer, M., Borte, M., Stangl, G.I., Schöneberg, T., Schulz, A., Karkossa, I., Rolle-Kampczyk, U.E., Thürmann, L., von Bergen, M., Escher, B.I., Junge, K.M., Reemtsma, T., Lehmann, I., Polte, T. (2020):
Maternal paraben exposure triggers childhood overweight development
Nat. Commun. 11 , art. 561
Volltext (DOI) - Lohmann, P., Benk, S., Gleixner, G., Potthast, K., Michalzik, B., Jehmlich, N., von Bergen, M. (2020):
Seasonal patterns of dominant microbes involved in central nutrient cycles in the subsurface
Microorganisms 8 (11), art. 1694
Volltext (DOI) - Lohmann, P., Schäpe, S.S., Haange, S.-B., Oliphant, K., Allen-Vercoe, E., Jehmlich, N., von Bergen, M. (2020):
Function is what counts: how microbial community complexity affects species, proteome and pathway coverage in metaproteomics
Expert Rev. Proteomics 17 (2), 163 - 173
Volltext (DOI) - Mahdi, D.H., Wissenbach, D.K., von Bergen, M., Vissiennon, Z., Chougourou, D., Nieber, K., Ahyi, V., Vissiennon, C. (2020):
Ethnomedicinal survey and in vitro confirmation of anti-inflammatory and antispasmodic properties of the termite strain Macrotermes bellicosus used in traditional medicine in the Republic of Benin
J. Ethnopharmacol. 254 , art. 112705
Volltext (DOI) - Massier, L., Chakaroun, R., Tabei, S., Crane, A., Didt, K.D., Fallmann, J., von Bergen, M., Haange, S.-B., Heyne, H., Stumvoll, M., Gericke, M., Dietrich, A., Blüher, M., Musat, N., Kovacs, P. (2020):
Adipose tissue derived bacteria are associated with inflammation in obesity and type 2 diabetes
Gut 69 (10), 1796 - 1806
Volltext (DOI) - Mendler, A., Geier, F., Haange, S.-B., Pierzchalski, A., Krause, J.L., Nijenhuis, I., Froment, J., Jehmlich, N., Berger, U., Ackermann, G., Rolle-Kampczyk, U., von Bergen, M., Herberth, G. (2020):
Mucosal-associated invariant T-Cell (MAIT) activation is altered by chlorpyrifos- and glyphosate-treated commensal gut bacteria
J. Immunotoxicol. 17 (1), 10 - 20
Volltext (DOI) - Mendler, A., Pierzchalski, A., Bauer, M., Röder, S., Sattler, A., Standl, M., Borte, M., von Bergen, M., Rolle-Kampczyk, U., Herberth, G. (2020):
MAIT cell activation in adolescents is impacted by bile acid concentrations and body weight
Clin. Exp. Immunol. 200 (2), 199 - 213
Volltext (DOI) - Meyer-Cifuentes, I.E., Werner, J., Jehmlich, N., Will, S.E., Neumann-Schaal, M., Öztürk, B. (2020):
Synergistic biodegradation of aromatic-aliphatic copolyester plastic by a marine microbial consortium
Nat. Commun. 11 , art. 5790
Volltext (DOI) - Meyer-Cifuentes, I., Gruhl, S., Haange, S.-B., Lünsmann, V., Jehmlich, N., von Bergen, M., Heipieper, H.J., Müller, J.A. (2020):
Benzylsuccinate synthase is post-transcriptionally regulated in the toluene-degrading denitrifier Magnetospirillum sp. strain 15-1
Microorganisms 8 (5), art. 681
Volltext (DOI) - Pereira, F.C., Wasmund, K., Cobankovic, I., Jehmlich, N., Herbold, C.W., Lee, K.S., Sziranyi, B., Vesely, C., Decker, T., Stocker, R., Warth, B., von Bergen, M., Wagner, M., Berry, D. (2020):
Rational design of a microbial consortium of mucosal sugar utilizers reduces Clostridiodes difficile colonization
Nat. Commun. 11 , art. 5104
Volltext (DOI) - Petruschke, H., Anders, J., Stadler, P.F., Jehmlich, N., von Bergen, M. (2020):
Enrichment and identification of small proteins in a simplified human gut microbiome
J. Proteomics 213 , art. 103604
Volltext (DOI) - Riba, A., Hassani, K., Walker, A., van Best, N., von Zeschwitz, D., Anslinger, T., Sillner, N., Rosenhain, S., Eibach, D., Maiga-Ascofaré, O., Rolle-Kampczyk, U., Basic, M., Binz, A., Mocek, S., Sodeik, B., Bauerfeind, R., Mohs, A., Trautwein, C., Kiessling, F., May, J., Klingenspor, M., Gremse, F., Schmitt-Kopplin, P., Bleich, A., Torow, N., von Bergen, M., Hornef, M.W. (2020):
Disturbed gut microbiota and bile homeostasis in Giardia-infected mice contributes to metabolic dysregulation and growth impairment
Sci. Transl. Med. 12 (565), eaay7019
Volltext (DOI) - Rohwerder, T., Rohde, M.-T., Jehmlich, N., Purswani, J. (2020):
Actinobacterial degradation of 2-hydroxyisobutyric acid proceeds via acetone and formyl-CoA by employing a thiamine-dependent lyase reaction
Front. Microbiol. 11 , art. 691
Volltext (DOI) - Rolle-Kampczyk, U., Gebauer, S., Haange, S.-B., Schubert, K., Kern, M., Moulla, Y., Dietrich, A., Schön, M.R., Klöting, N., von Bergen, M., Blüher, M. (2020):
Accumulation of distinct persistent organic pollutants is associated with adipose tissue inflammation
Sci. Total Environ. 748 , art. 142458
Volltext (DOI) - Ros, M., Blaya, J., Baldrian, P., Bastida, F., Richnow, H.H., Jehmlich, N., Pascual, J.A. (2020):
In vitro elucidation of suppression effects of composts to soil-borne pathogen Phytophthora nicotianae on pepper plants using 16S amplicon sequencing and metaproteomics
Renew. Agr. Food Syst. 35 (2), 206 - 214
Volltext (DOI) - Schäpe, S.S., Krause, J.L., Masanetz, R.K., Riesbeck, S., Starke, R., Rolle-Kampczyk, U., Eberlein, C., Heipieper, H.J., Herberth, G., von Bergen, M., Jehmlich, N. (2020):
Environmentally relevant concentration of bisphenol S shows slight effects on SIHUMIx
Microorganisms 8 (9), art. 1436
Volltext (DOI) - Shatilina, Z., Drozdova, P., Bedulina, D., Rivarola-Duarte, L., Schreiber, S., Otto, C., Jühling, F., Aulhorn, S., Busch, W., Lubyaga, Y., Kondrateva, E., Pobezhimova, T., Jakob, L., Lucassen, M., Sartoris, F.J., Hackermüller, J., Pörtner, H.-O., Stadler, P.F., Luckenbach, T., Timofeyev, M. (2020):
Transcriptome-level effects of the model organic pollutant phenanthrene and its solvent acetone in three amphipod species
Comp. Biochem. Physiol. D-Genomics Proteomics 33 , art. 100630
Volltext (DOI) - Starke, R., Capek, P., Morais, D., Callister, S.J., Jehmlich, N. (2020):
The total microbiome functions in bacteria and fungi
J. Proteomics 213 , art. 103623
Volltext (DOI) - Starke, R., Capek, P., Morais, D., Jehmlich, N., Baldrian, P. (2020):
Explorative meta-analysis of 377 extant fungal genomes predicted a total mycobiome functionality of 42.4 million KEGG functions
Front. Microbiol. 11 , art. 143
Volltext (DOI) - Starke, R., Oliphant, K., Jehmlich, N., Schäpe, S.S., Sachsenberg, T., Kohlbacher, O., Allen-Vercoe, E., von Bergen, M. (2020):
Tracing incorporation of heavy water into proteins for species-specific metabolic activity in complex communities
J. Proteomics 222 , art. 103791
Volltext (DOI) - van Best, N., Rolle-Kampczyk, U., Schaap, F.G., Basic, M., Olde Damink, S.W.M., Bleich, A., Savelkoul, P.H.M., von Bergen, M., Penders, J., Hornef, M.W. (2020):
Bile acids drive the newborn’s gut microbiota maturation
Nat. Commun. 11 , art. 3692
Volltext (DOI) - Wang, Z., Karkossa, I., Großkopf, H., Rolle-Kampczyk, U., Hackermüller, J., von Bergen, M., Schubert, K. (2020):
Comparison of quantitation methods in proteomics to define relevant toxicological information on AhR activation of HepG2 cells by BaP
Toxicology 448 , art. 152652
Volltext (DOI) - Warrick, P.A., Lostanlen, V., Eickenberg, M., Andén, J., Homsi, M.N. (2020):
Arrhythmia classification of 12-lead electrocardiograms by hybrid scattering-LSTM networks
Computing in Cardiology 47 , 1 - 4
Volltext (DOI)
2019 (44)
- Anselmann, S.E.L., Löffler, C., Stärk, H.-J., Jehmlich, N., von Bergen, M., Brüls, T., Boll, M. (2019):
The class II benzoyl‐coenzyme A reductase complex from the sulfate‐reducing Desulfosarcina cetonica
Environ. Microbiol. 21 (11), 4241 - 4252
Volltext (DOI) - Bastida, F., García, C., Fierer, N., Eldridge, D.J., Bowker, M.A., Abades, S., Alfaro, F.D., Berhe, A.A., Cutler, N.A., Gallardo, A., García-Velázquez, L., Hart, S.C., Hayes, P.E., Hernández, T., Hseu, Z.-Y., Jehmlich, N., Kirchmair, M., Lambers, H., Neuhauser, S., Peña-Ramírez, V.M., Pérez, C.A., Reed, S.C., Santos, F.A.M., Siebe, C., Sullivan, B.W., Trivedi, P., Vera, A., Williams, M.A., Moreno, J.L., Delgado-Baquerizo, M. (2019):
Global ecological predictors of the soil priming effect
Nat. Commun. 10 , art. 3481
Volltext (DOI) - Bastida, F., Jehmlich, N., Martínez-Navarro, J., Bayona, V., García, C., Moreno, J.L. (2019):
The effects of struvite and sewage sludge on plant yield and the microbial community of a semiarid Mediterranean soil
Geoderma 337 , 1051 - 1057
Volltext (DOI) - Bastida, F., López-Mondéjar, R., Baldrian, P., Andrés-Abellán, M., Jehmlich, N., Torres, I.F., García, C., López-Serrano, F.R. (2019):
When drought meets forest management: Effects on the soil microbial community of a Holm oak forest ecosystem
Sci. Total Environ. 662 , 276 - 286
Volltext (DOI) - Bauer, M., Hackermüller, J., Schor, J., Schreiber, S., Fink, B., Pierzchalski, A., Herberth, G. (2019):
Specific induction of the unique GPR15 expression in heterogeneous blood lymphocytes by tobacco smoking
Biomarkers 24 (3), 217 - 224
Volltext (DOI) - Buettner, C., von Bergen, M., Jehmlich, N., Noll, M. (2019):
Pseudomonas spp. are key players in agricultural biogas substrate degradation
Sci. Rep. 9 , 12871
Volltext (DOI) - Donath, A., Jühling, F., Al-Arab, M., Bernhart, S.H., Reinhardt, F., Stadler, P.F., Middendorf, M., Bernt, M. (2019):
Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes
Nucleic Acids Res. 47 (20), 10543 - 10552
Volltext (DOI) - Drozdova, P., Bedulina, D., Madyarova, E., Rivarola-Duarte, L., Schreiber, S., Stadler, P.F., Luckenbach, T., Timofeyev, M. (2019):
Description of strongly heat-inducible heat shock protein 70 transcripts from Baikal endemic amphipods
Sci. Rep. 9 , art. 8907
Volltext (DOI) - Drozdova, P., Rivarola-Duarte, L., Bedulina, D., Axenov-Gribanov, D., Schreiber, S., Gurkov, A., Shatilina, Z., Vereshchagina, K., Lubyaga, Y., Madyarova, E., Otto, C., Jühling, F., Busch, W., Jakob, L., Lucassen, M., Sartoris, F.J., Hackermüller, J., Hoffmann, S., Pörtner, H.-O., Luckenbach, T., Timofeyev, M., Stadler, P.F. (2019):
Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods
BMC Genomics 20 , art. 712
Volltext (DOI) - Engel, K.M., Baumann, S., Rolle-Kampczyk, U., Schiller, J., von Bergen, M., Grunewald, S. (2019):
Metabolomic profiling reveals correlations between spermiogram parameters and the metabolites present in human spermatozoa and seminal plasma
PLOS One 14 (2), e0211679
Volltext (DOI) - Geiger, R.A., Junghare, M., Mergelsberg, M., Ebenau‐Jehle, C., Jesenofsky, V.J., Jehmlich, N., von Bergen, M., Schink, B., Boll, M. (2019):
Enzymes involved in phthalate degradation in sulphate‐reducing bacteria
Environ. Microbiol. 21 (10), 3601 - 3612
Volltext (DOI) - Großkopf, H., Schubert, K., von Bergen, M. (2019):
AhR-dependent non-genomic signaling in macrophages - A multi-PTM-omics and proteomics study
Eur. J. Immunol. 49 (Suppl. 1), 137
Volltext (DOI) - Haange, S.-B., Jehmlich, N., Hoffmann, M., Weber, K., Lehmann, J., von Bergen, M., Slanina, J. (2019):
Disease development is accompanied by changes in bacterial protein abundance and functions in a refined model of dextran sulfate sodium (DSS)-induced colitis
J. Proteome Res. 18 (4), 1774 - 1786
Volltext (DOI) - Haange, S.-B., Jehmlich, N., Jacobi, T., von Bergen, M. (2019):
Chancen und Risiken von Metaproteomik in der Mikrobiomforschung. Opportunities and pitfalls of metaproteomics in microbiome research
Adipositas - Ursachen, Folgeerkrankungen, Therapie 13 (4), 205 - 213
Volltext (DOI) - Hartmann, T., Bernt, M., Middendorf, M. (2019):
An exact algorithm for sorting by weighted preserving genome rearrangements
IEEE-ACM Trans. Comput. Biol. Bioinform. 16 (1), 52 - 62
Volltext (DOI) - Huwiler, S.G., Löffler, C., Anselmann, S.E.L., Stärk, H.-J., von Bergen, M., Flechsler, J., Rachel, R., Boll, M. (2019):
One-megadalton metalloenzyme complex in Geobacter metallireducens involved in benzene ring reduction beyond the biological redox window
Proc. Natl. Acad. Sci. U.S.A. 116 (6), 2259 - 2264
Volltext (DOI) - Kallies, R., Hölzer, M., Brizola Toscan, R., Nunes da Rocha, U., Anders, J., Marz, M., Chatzinotas, A. (2019):
Evaluation of sequencing library preparation protocols for viral metagenomic analysis from pristine aquifer groundwaters
Viruses 11 (6), art. 484
Volltext (DOI) - Kallies, R., Kiesel, B., Schmidt, M., Ghanem, N., Zopfi, J., Hackermüller, J., Harms, H., Wick, L.Y., Chatzinotas, A. (2019):
Complete genome sequence of Pseudoalteromonas virus vB_PspP-H6/1 that infects Pseudoalteromonas sp. strain H6
Mar. Genom. 47 , art. 100667
Volltext (DOI) - Kämpf, C., Specht, M., Scholz, A., Puppel, S.-H., Doose, G., Reiche, K., Schor, J., Hackermüller, J. (2019):
uap: reproducible and robust HTS data analysis
BMC Bioinformatics 20 , art. 664
Volltext (DOI) - Karkossa, I., Bannuscher, A., Hellack, B., Bahl, A., Buhs, S., Nollau, P., Luch, A., Schubert, K., von Bergen, M., Haase, A. (2019):
An in-depth multi-omics analysis in RLE-6TN rat alveolar epithelial cells allows for nanomaterial categorization
Part. Fibre Toxicol. 16 (1), art. 38
Volltext (DOI) - Ke, X., Walker, A., Haange, S.-B., Lagkouvardos, I., Liu, Y., Schmitt-Kopplin, P., von Bergen, M., Jehmlich, N., He, X., Clavel, T., Cheung, P.C.K. (2019):
Synbiotic-driven improvement of metabolic disturbances is associated with changes in the gut microbiome in diet-induced obese mice
Mol. Metab. 22 , 96 - 109
Volltext (DOI) - Kratochvil, I., Bannuscher, A., Hellack, B., von Bergen, M., Haase, A., Schubert, K. (2019):
Nanomaterials affect oxidative phosphorylation and phagocytosis in alveolar macrophages
Eur. J. Immunol. 49 (Suppl. 1), 232
Volltext (DOI) - Kratochvil, I., Hofmann, T., Rother, S., Schlichting, R., Moretti, R., Scharnweber, D., Hintze, V., Escher, B.I., Meiler, J., Kalkhof, S., von Bergen, M. (2019):
Mono(2‐ethylhexyl) phthalate (MEHP) and mono(2‐ethyl‐5‐oxohexyl) phthalate (MEOHP) but not di(2‐ethylhexyl) phthalate (DEHP) bind productively to the peroxisome proliferator‐activated receptor γ
Rapid Commun. Mass Spectrom. 33 (S1), 75 - 85
Volltext (DOI) - Küster, E., Kalkhof, S., Aulhorn, S., von Bergen, M., Gündel, U. (2019):
Effects of five substances with different modes of action on cathepsin H, C and L activities in zebrafish embryos
Int. J. Environ. Res. Public Health 16 (20), art. 3956
Volltext (DOI) - Li, Y., Kocot, K.M., Tassia, M.G., Cannon, J.T., Bernt, M., Halanych, K.M. (2019):
Mitogenomics reveals a novel genetic code in Hemichordata
Genome Biol. Evol. 11 (1), 29 - 40
Volltext (DOI) - Mandić, A.D., Woting, A., Jaenicke, T., Sander, A., Sabrowski, W., Rolle-Kampczyk, U., von Bergen, M., Blaut, M. (2019):
Clostridium ramosum regulates enterochromaffin cell development and serotonin release
Sci. Rep. 9 , art. 1177
Volltext (DOI) - Medawar, E., Huhn, S., Villringer, A., Witte, A.-V. (2019):
The effects of plant-based diets on the body and the brain: a systematic review
Transl. Psychiatr. 9 (1), art. 226
Volltext (DOI) - Mueller, A., Ulrich, N., Hollmann, J., Zapata Sanchez, C.E., Rolle-Kampczyk, U.E., von Bergen, M. (2019):
Characterization of a multianalyte GC-MS/MS procedure for detecting and quantifying polycyclic aromatic hydrocarbons (PAHs) and PAH derivatives from air particulate matter for an improved risk assessment
Environ. Pollut. 255 (Part 2), art. 112967
Volltext (DOI) - Ordiz, M.I., Semba, R.D., Moaddel, R., Rolle-Kampczyk, U., von Bergen, M., Herberth, G., Khadeer, M., Röder, S., Manary, M.J. (2019):
Serum amino acid concentrations in infants from Malawi are associated with linear growth
Curr. Dev. Nutr. 3 (10), nzz100
Volltext (DOI) - Reina, R., Kellner, H., Hess, J., Jehmlich, N., García-Romera, I., Aranda, E., Hofrichter, M., Liers, C. (2019):
Genome and secretome of Chondrostereum purpureum correspond to saprotrophic and phytopathogenic life styles
PLOS One 14 (3), e0212769
Volltext (DOI) - Schäpe, S.S., Krause, J.L., Engelmann, B., Fritz-Wallace, K., Schattenberg, F., Liu, Z., Müller, S., Jehmlich, N., Rolle-Kampczyk, U., Herberth, G., von Bergen, M. (2019):
The simplified human intestinal microbiota (SIHUMIx) shows high structural and functional resistance against changing transit times in in vitro bioreactors
Microorganisms 7 (12), art. 641
Volltext (DOI) - Schmidt, J.R., Geurtzen, K., von Bergen, M., Schubert, K., Knopf, F. (2019):
Glucocorticoid treatment leads to aberrant ion and macromolecular transport in regenerating zebrafish fins
Front. Endocrinol. 10 , art. 674
Volltext (DOI) - Schmidt, J.R., Vogel, S., Moeller, S., Kalkhof, S., Schubert, K., von Bergen, M., Hempel, U. (2019):
Sulfated hyaluronic acid and dexamethasone possess a synergistic potential in the differentiation of osteoblasts from human bone marrow stromal cells
J. Cell. Biochem. 120 (5), 8706 - 8722
Volltext (DOI) - Schubert, K., Collins, L.E., Green, P., Nagase, H., Troeberg, L. (2019):
LRP1 controls TNF release via the TIMP-3/ADAM17 axis in endotoxin-activated macrophages
J. Immunol. 202 (4), 1501 - 1509
Volltext (DOI) - Schubert, K., Schor, J., Kratochvil, I., Hackermüller, J., von Bergen, M. (2019):
Multi-omics profiling of MAIT cells reveals specific patterns of antigen-dependent and -independent activation
Eur. J. Immunol. 49 (Suppl. 1), 141
Volltext (DOI) - Schüttler, A., Altenburger, R., Ammar, M., Bader-Blukott, M., Jakobs, G., Knapp, J., Krüger, J., Reiche, K., Wu, G.-M., Busch, W. (2019):
Map and model—moving from observation to prediction in toxicogenomics
GigaScience 8 (6), giz057
Volltext (DOI) - Starke, R., Jehmlich, N., Alfaro, T., Dohnalkova, A., Capek, P., Bell, S.L., Hofmockel, K.S. (2019):
Incomplete cell disruption of resistant microbes
Sci. Rep. 9 , art. 5618
Volltext (DOI) - Starke, R., Jehmlich, N., Bastida, F. (2019):
Using proteins to study how microbes contribute to soil ecosystem services: The current state and future perspectives of soil metaproteomics
J. Proteomics 198 , 50 - 58
Volltext (DOI) - Taubert, M., Grob, C., Crombie, A., Howat, A.M., Burns, O.J., Weber, M., Lott, C., Kaster, A.-K., Vollmers, J., Jehmlich, N., von Bergen, M., Chen, Y., Murrell, J.C. (2019):
Communal metabolism by Methylococcaceae and Methylophilaceae is driving rapid aerobic methane oxidation in sediments of a shallow seep near Elba, Italy
Environ. Microbiol. 21 (10), 3780 - 3795
Volltext (DOI) - Thürmann, L., Herberth, G., Rolle-Kampczyk, U., Röder, S., Borte, M., von Bergen, M., Lehmann, I., Trump, S. (2019):
Elevated gestational IL-13 during fetal development is associated with hyperactivity and inattention in eight-year-old children
Front. Immunol. 10 , art. 1658
Volltext (DOI) - Türkowsky, D., Lohmann, P., Mühlenbrink, M., Schubert, T., Adrian, L., Goris, T., Jehmlich, N., von Bergen, M. (2019):
Thermal proteome profiling allows quantitative assessment of interactions between tetrachloroethene reductive dehalogenase and trichloroethene
J. Proteomics 192 , 10 - 17
Volltext (DOI) - Tveit, A.T., Hestnes, A.G., Robinson, S.L., Schintlmeister, A., Dedysh, S.N., Jehmlich, N., von Bergen, M., Herbold, C., Wagner, M., Richter, A., Svenning, M.M. (2019):
Widespread soil bacterium that oxidizes atmospheric methane
Proc. Natl. Acad. Sci. U.S.A. 116 (17), 8515 - 8524
Volltext (DOI) - Wieczorek, A.S., Schmidt, O., Chatzinotas, A., von Bergen, M., Gorissen, A., Kolb, S. (2019):
Ecological functions of agricultural soil bacteria and microeukaryotes in chitin degradation: A case study
Front. Microbiol. 10 , art. 1293
Volltext (DOI) - Yazbeck, A.M, Stadler, P.F., Tout, K., Fallmann, J. (2019):
Automatic curation of large comparative animal MicroRNA datasets
Bioinformatics 35 (22), 4553 - 4559
Volltext (DOI)
2018 (38)
- Bastida, F., Crowther, T.W., Prieto, I., Routh, D., García, C., Jehmlich, N. (2018):
Climate shapes the protein abundance of dominant soil bacteria
Sci. Total Environ. 640–641 , 18 - 21
Volltext (DOI) - Bastida, F., Jehmlich, N., Torres, I.F., García, C. (2018):
The extracellular metaproteome of soils under semiarid climate: A methodological comparison of extraction buffers
Sci. Total Environ. 619–620 , 707 - 711
Volltext (DOI) - Becher, E., Heese, A., Claußen, L., Eisen, S., Jehmlich, N., Rohwerder, T., Purswani, J. (2018):
Active site alanine preceding catalytic cysteine determines unique substrate specificity in bacterial CoA‐acylating prenal dehydrogenase
FEBS Lett. 592 (7), 1150 - 1160
Volltext (DOI) - Behrens, G., Winzen, R., Rehage, N., Dörrie, A., Barsch, M., Hoffmann, A., Hackermüller, J., Tiedje, C., Heissmeyer, V., Holtmann, H. (2018):
A translational silencing function of MCPIP1/Regnase-1 specified by the target site context
Nucleic Acids Res. 46 (8), 4256 - 4270
Volltext (DOI) - Bulitta, B., Zuschratter, W., Bernal, I., Bruder, D., Klawonn, F., von Bergen, M., Garritsen, H.S.P., Jänsch, L. (2018):
Proteomic definition of human mucosal‐associated invariant T cells determines their unique molecular effector phenotype
Eur. J. Immunol. 48 (8), 1336 - 1349
Volltext (DOI) - Campoy, C., Cerdó, T., Ruiz, A., Jauregui, R., von Bergen, M., Suarez, A. (2018):
Maternal pre-pregnancy body mass index imprints a gut microbial community composition with a specific functionality
Ann. Nutr. Metab. 73 (Suppl. 2), 55
Volltext (DOI) - Canzler, S., Stadler, P.F., Schor, J. (2018):
The fungal snoRNAome
RNA 24 (3), 342 - 360
Volltext (DOI) - Cerdó, T., Ruiz, A., Acuña, I., Jáuregui, R., Jehmlich, N., Haange, S.-B., von Bergen, M., Suárez, A., Campoy, C. (2018):
Gut microbial functional maturation and succession during human early life
Environ. Microbiol. 20 (6), 2160 - 2177
Volltext (DOI) - Chupani, L., Niksirat, H., Lünsmann, V., Haange, S.-B., von Bergen, M., Jehmlich, N., Zuskova, E. (2018):
Insight into the modulation of intestinal proteome of juvenile common carp (Cyprinus carpio L.) after dietary exposure to ZnO nanoparticles
Sci. Total Environ. 613-614 , 62 - 71
Volltext (DOI) - Deutsch, E.W., Perez-Riverol, Y., Chalkley, R.J., Wilhelm, M., Tate, S., Sachsenberg, T., Walzer, M., Käll, L., Delanghe, B., Böcker, S., Schymanski, E.L., Wilmes, P., Dorfer, V., Kuster, B., Volders, P.-J., Jehmlich, N., Vissers, J.P.C., Wolan, D.W., Wang, A.Y., Mendoza, L., Shofstahl, J., Dowsey, A.W., Griss, J., Salek, R.M., Neumann, S., Binz, P.-A., Lam, H., Vizcaíno, J.A., Bandeira, N., Röst, H. (2018):
Expanding the use of spectral libraries in proteomics
J. Proteome Res. 17 (12), 4051 - 4060
Volltext (DOI) - Essig, K., Kronbeck, N., Guimaraes, J.C., Lohs, C., Schlundt, A., Hoffmann, A., Behrens, G., Brenner, S., Kowalska, J., Lopez-Rodriguez, C., Jemielity, J., Holtmann, H., Reiche, K., Hackermüller, J., Sattler, M., Zavolan, M., Heissmeyer, V. (2018):
Roquin targets mRNAs in a 3′-UTR-specific manner by different modes of regulation
Nat. Commun. 9 , art. 3810
Volltext (DOI) - Firacative, C., Gressler, A.E., Schubert, K., Schulze, B., Müller, U., Brombacher, F., von Bergen, M., Alber, G. (2018):
Identification of T helper (Th)1- and Th2-associated antigens of Cryptococcus neoformans in a murine model of pulmonary infection
Sci. Rep. 8 , art. 2681
Volltext (DOI) - Floegel, A., Kühn, T., Sookthai, D., Johnson, T., Prehn, C., Rolle-Kampczyk, U., Otto, W., Weikert, C., Illig, T., von Bergen, M., Adamski, J., Boeing, H., Kaaks, R., Pischon, T. (2018):
Serum metabolites and risk of myocardial infarction and ischemic stroke: a targeted metabolomic approach in two German prospective cohorts
Eur. J. Epidemiol. 33 (1), 55 - 66
Volltext (DOI) - Hartmann, T., Bernt, M., Middendorf, M. (2018):
EqualTDRL: illustrating equivalent tandem duplication random loss rearrangements
BMC Bioinformatics 19 , art. 192
Volltext (DOI) - Herbst, F.-A., Jehmlich, N., von Bergen, M., Schmidt, F. (2018):
Sulfur-34S and 36S stable isotope labeling of amino acids for quantification (SULAQ34/36) of proteome analyses
In: Becher, D. (ed.)
Microbial proteomics : methods and protocols
Methods in Molecular Biology 1841
Springer Nature, p. 163 - 174
Volltext (DOI) - Hintze, V., Rother, S., Köhler, L., Hempel, U., Anderegg, U., Pisabarro, M.T., Hofbauer, L., Schnabelrauch, M., Franz, S., von Bergen, M., Simon, J., Scharnweber, D. (2018):
Glycosaminoglycan derivatives - functional nanostructures modulating healing processes in bone and skin
FEBS Open Bio 8 (S1), 50 - 50
Volltext (DOI) - Iqbal, K., Dietrich, S., Wittenbecher, C., Krumsiek, J., Kühn, T., Lacruz, M.E., Kluttig, A., Prehn, C., Adamski, J., von Bergen, M., Kaaks, R., Schulze, M.B., Boeing, H., Floegel, A. (2018):
Comparison of metabolite networks from four German population-based studies
Int. J. Epidemiol. 47 (6), 2070 - 2081
Volltext (DOI) - Jahreis, S., Trump, S., Bauer, M., Bauer, T., Thürmann, L., Feltens, R., Wang, Q., Gu, L., Grützmann, K., Röder, S., Averbeck, M., Weichenhan, D., Plass, C., Sack, U., Borte, M., Dubourg, V., Schüürmann, G., Simon, J.C., von Bergen, M., Hackermüller, J., Eils, R., Lehmann, I., Polte, T. (2018):
Maternal phthalate exposure promotes allergic airway inflammation over 2 generations through epigenetic modifications
J. Allergy Clin. Immunol. 141 (2), 741 - 753
Volltext (DOI) - Junge, K.M., Leppert, B., Jahreis, S., Wissenbach, D.K., Feltens, R., Grützmann, K., Thürmann, L., Bauer, T., Ishaque, N., Schick, M., Bewerunge-Hudler, M., Röder, S., Bauer, M., Schulz, A., Borte, M., Landgraf, K., Körner, A., Kiess, W., von Bergen, M., Stangl, G.I., Trump, S., Eils, R., Polte, T., Lehmann, I. (2018):
MEST mediates the impact of prenatal bisphenol A exposure on long-term body weight development
Clin. Epigenetics 10 , art. 58
Volltext (DOI) - Korkmaz, A.G., Popov, I., Peisl, L., Codrea, M.C., Nahnsen, S., Steimle, A., Velic, A., Macek, B., von Bergen, M., Bernhardt, J., Frick, J.S. (2018):
Proteome and phosphoproteome analysis of commensally induced dendritic cell maturation states
J. Proteomics 180 , 11 - 24
Volltext (DOI) - Lechner, U., Türkowsky, D., Dinh, T.T.H., Al-Fathi, H., Schwoch, S., Franke, S., Gerlach, M.-S., Koch, M., von Bergen, M., Jehmlich, N., Dang, T.C.H. (2018):
Desulfitobacterium contributes to the microbial transformation of 2,4,5‐T by methanogenic enrichment cultures from a Vietnamese active landfill
Microb. Biotechnol. 11 (6), 1137 - 1156
Volltext (DOI) - Malik, A.A., Puissant, J., Buckeridge, K.M., Goodall, T., Jehmlich, N., Chowdhury, S., Gweon, H.S., Peyton, J.M., Mason, K.E., van Agtmaal, M., Blaud, A., Clark, I.A., Whitaker, J., Pywell, R.F., Ostle, N., Gleixner, G., Griffiths, R.I. (2018):
Land use driven change in soil pH affects microbial carbon cycling processes
Nat. Commun. 9 , art. 3591
Volltext (DOI) - May, J.C., Jurneczko, E., Stow, S.M., Kratochvil, I., Kalkhof, S., McLean, J.A. (2018):
Conformational landscapes of ubiquitin, cytochrome c, and myoglobin: Uniform field ion mobility measurements in helium and nitrogen drift gas
Int. J. Mass Spectrom. 427 , 79 - 90
Volltext (DOI) - Rehage, N., Davydova, E., Conrad, C., Behrens, G., Maiser, A., Stehklein, J.E., Brenner, S., Klein, J., Jeridi, A., Hoffmann, A., Lee, E., Dianzani, U., Willemsen, R., Feederle, R., Reiche, K., Hackermüller, J., Leonhardt, H., Sharma, S., Niessing, D., Heissmeyer, V. (2018):
Binding of NUFIP2 to Roquin promotes recognition and regulation of ICOS mRNA
Nat. Commun. 9 , art. 299
Volltext (DOI) - Russo, R., Haange, S.-B., Rolle-Kampczyk, U., von Bergen, M., Becker, J.M., Liess, M. (2018):
Identification of pesticide exposure-induced metabolic changes in mosquito larvae
Sci. Total Environ. 643 , 1533 - 1541
Volltext (DOI) - Schmidt, J.R., Rücker-Braun, E., Heidrich, K., von Bonin, M., Stölzel, F., Thiede, C., Middeke, J.M., Ehninger, G., Bornhäuser, M., Schetelig, J., Schubert, K., von Bergen, M., Heidenreich, F. (2018):
Pilot study on mass spectrometry–based analysis of the proteome of CD34+CD123+ progenitor cells for the identification of potential targets for immunotherapy in acute myeloid leukemia
Proteomes 6 (1), art. 11
Volltext (DOI) - Taubert, M., Stöckel, S., Geesink, P., Girnus, S., Jehmlich, N., von Bergen, M., Rösch, P., Popp, J., Küsel, K. (2018):
Tracking active groundwater microbes with D2O labelling to understand their ecosystem function
Environ. Microbiol. 20 (1), 369 - 384
Volltext (DOI) - Thabet, A., Schmidt, J., Baumann, S., Honscha, W., von Bergen, M., Daugschies, A., Bangoura, B. (2018):
Resistance towards monensin is proposed to be acquired in a Toxoplasma gondii model by reduced invasion and egress activities, in addition to increased intracellular replication
Parasitology 145 (3), 313 - 325
Volltext (DOI) - Thürmann, L., Grützmann, K., Klös, M., Bieg, M., Winter, M., Polte, T., Bauer, T., Schick, M., Bewerunge-Hudler, M., Röder, S., Bauer, M., Wissenbach, D.K., Sack, U., Weichenhan, D., Mücke, O., Plass, C., Borte, M., von Bergen, M., Lehmann, I., Eils, R., Trump, S. (2018):
Early-onset childhood atopic dermatitis is related to NLRP2 repression
J. Allergy Clin. Immunol. 141 (4), 1482 - 1485.e16
Volltext (DOI) - Tomin, T., Fritz, K., Gindlhuber, J., Waldherr, L., Pucher, B., Thallinger, G.G., Nomura, D.K., Schittmayer, M., Birner-Gruenberger, R. (2018):
Deletion of adipose triglyceride lipase links triacylglycerol accumulation to a more-aggressive phenotype in A549 lung carcinoma cells
J. Proteome Res. 17 (4), 1415 - 1425
Volltext (DOI) - Tousova, Z., Froment, J., Oswald, P., Slobodník, J., Hilscherova, K., Thomas, K.V., Tollefsen, K.E., Reid, M., Langford, K., Blaha, L. (2018):
Identification of algal growth inhibitors in treated waste water using effect-directed analysis based on non-target screening techniques
J. Hazard. Mater. 358 , 494 - 502
Volltext (DOI) - Tousova, Z., Oswald, P., Slobodnik, J., Blaha, L., Muz, M., Hu, M., Brack, W., Krauss, M., Di Paolo, C., Tarcai, Z., Seiler, T.-B., Hollert, H., Koprivica, S., Ahel, M., Schollée, J.E., Hollender, J., Suter, M.J.-F., Hidasi, A.O., Schirmer, K., Sonavane, M., Ait-Aissa, S., Creusot, N., Brion, F., Froment, J., Almeida, A.C., Thomas, K., Tollefsen, K.E., Tufi, S., Ouyang, X., Leonards, P., Lamoree, M., Torrens, V.O., Kolkman, A., Schriks, M., Spirhanzlova, P., Tindall, A., Schulze, T. (2018):
Corrigendum to “European demonstration program on the effect-based and chemical identification and monitoring of organic pollutants in European surface waters” [Sci. Total Environ. 601–602 (2017) 1849–1868]
Sci. Total Environ. 635 , 1620 - 1621
Volltext (DOI) - Türkowsky, D., Esken, J., Goris, T., Schubert, T., Diekert, G., Jehmlich, N., von Bergen, M. (2018):
A retentive memory of tetrachloroethene respiration in Sulfurospirillum halorespirans - involved proteins and a possible link to acetylation of a two-component regulatory system
J. Proteomics 181 , 36 - 46
Volltext (DOI) - Türkowsky, D., Jehmlich, N., Diekert, G., Adrian, L., von Bergen, M., Goris, T. (2018):
An integrative overview of genomic, transcriptomic and proteomic analyses in organohalide respiration research
FEMS Microbiol. Ecol. 94 (3), fiy013
Volltext (DOI) - Vásquez-Piñeros, M.A., Martínez-Lavanchy, P.M., Jehmlich, N., Pieper, D.H., Rincón, C.A., Harms, H., Junca, H., Heipieper, H.J. (2018):
Delftia sp. LCW, a strain isolated from a constructed wetland shows novel properties for dimethylphenol isomers degradation
BMC Microbiol. 18 , art. 108
Volltext (DOI) - Wintsche, B., Jehmlich, N., Popp, D., Harms, H., Kleinsteuber, S. (2018):
Metabolic adaptation of methanogens in anaerobic digesters upon trace element limitation
Front. Microbiol. 9 , art. 405
Volltext (DOI) - Wuchty, S., Müller, S.A., Caufield, J.H., Häuser, R., Aloy, P., Kalkhof, S., Uetz, P. (2018):
Proteome data improves protein function prediction in the interactome of Helicobacter pylori
Mol. Cell. Proteomics 17 (5), 961 - 973
Volltext (DOI) - Zecchin, S., Mueller, R.C., Seifert, C., Stingl, U., Anantharaman, K., von Bergen, M., Cavalca, L., Pester, M. (2018):
Rice paddy Nitrospirae carry and express genes related to sulfate respiration: Proposal of the new genus “Candidatus Sulfobium”
Appl. Environ. Microb. 84 (5), e02224-17
Volltext (DOI)
2017 (43)
- Al Arab, M., Bernt, M., Höner zu Siederdissen, C., Tout, K., Stadler, P.F. (2017):
Partially local three-way alignments and the sequence signatures of mitochondrial genome rearrangements
Algorithms Mol. Biol. 12 , art. 22
Volltext (DOI) - Bastida, F., Torres, I.F., Andrés-Abellán, M., Baldrian, P., López-Mondéjar, R., Větrovský, T., Richnow, H.H., Starke, R., Ondoño, S., García, C., López-Serrano, F., Jehmlich, N. (2017):
Differential sensitivity of total and active soil microbial communities to drought and forest management
Glob. Change Biol. 23 (10), 4185 - 4203
Volltext (DOI) - Binder, S., Hösler, N., Riedel, D., Zipfel, I., Buschmann, T., Kämpf, C., Reiche, K., Burger, R., Gramatzki, M., Hackermüller, J., Stadler, P.F., Horn, F. (2017):
STAT3-induced long noncoding RNAs in multiple myeloma cells display different properties in cancer
Sci. Rep. 7 , art. 7976
Volltext (DOI) - Buesen, R., Chorley, B.N., da Silva Lima, B., Daston, G., Deferme, L., Ebbels, T., Gant, T.W., Goetz, A., Greally, J., Gribaldo, L., Hackermüller, J., Hubesch, B., Jennen, D., Johnson, K., Kanno, J., Kauffmann, H.-M., Laffont, M., McMullen, P., Meehan, R., Pemberton, M., Perdichizzi, S., Piersma, A.H., Sauer, U.G., Schmidt, K., Seitz, H., Sumida, K., Tollefsen, K.E., Tong, W., Tralau, T., van Ravenzwaay, B., Weber, R.J.M., Worth, A., Yauk, C., Poole, A. (2017):
Applying 'omics technologies in chemicals risk assessment: Report of an ECETOC workshop
Regul. Toxicol. Pharmacol. 91 (Suppl. 1), S3 - S13
Volltext (DOI) - Canzler, S., Stadler, P.F., Hertel, J. (2017):
Evolution of fungal U3 snoRNAs: Structural variation and introns
Non-Coding RNA 3 (1), art. 3
Volltext (DOI) - Chupani, L., Zusková, É., Niksirat, H., Panáček, A., Lünsmann, V., Haange, S.-B., von Bergen, M., Jehmlich, N. (2017):
Effects of chronic dietary exposure of zinc oxide nanoparticles on the serum protein profile of juvenile common carp (Cyprinus carpio L.)
Sci. Total Environ. 579 , 1504 - 1511
Volltext (DOI) - Ebenau-Jehle, C., Mergelsberg, M., Fischer, S., Brüls, T., Jehmlich, N., von Bergen, M., Boll, M. (2017):
An unusual strategy for the anoxic biodegradation of phthalate
ISME J. 11 (1), 224 - 236
Volltext (DOI) - Englich, B., Herberth, G., Rolle-Kampczyk, U., Trump, S., Röder, S., Borte, M., Stangl, G.I., von Bergen, M., Lehmann, I., Junge, K.M. (2017):
Maternal cytokine status may prime the metabolic profile and increase risk of obesity in children
Int. J. Obes. 41 (9), 1440 - 1446
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From the exposome to mechanistic understanding of chemical-induced adverse effects
Environ. Int. 99 , 97 - 106
Volltext (DOI) - Friedman, R.C., Kalkhof, S., Doppelt-Azeroual, O., Mueller, S.A., Chovancová, M., von Bergen, M., Schwikowski, B. (2017):
Common and phylogenetically widespread coding for peptides by bacterial small RNAs
BMC Genomics 18 , art. 553
Volltext (DOI) - Gant, T.W., Sauer, U.G., Zhang, S.-D., Chorley, B.N., Hackermüller, J., Perdichizzi, S., Tollefsen, K.E., van Ravenzwaay, B., Yauk, C., Tong, W., Poole, A. (2017):
A generic Transcriptomics Reporting Framework (TRF) for 'omics data processing and analysis
Regul. Toxicol. Pharmacol. 91 (Suppl. 1), S36 - S45
Volltext (DOI) - Goris, T., Schenz, B., Zimmermann, J., Lemos, M., Hackermüller, J., Schubert, T., Diekert, G. (2017):
The complete genome of the tetrachloroethene-respiring Epsilonproteobacterium Sulfurospirillum halorespirans
J. Biotechnol. 255 , 33 - 36
Volltext (DOI) - Hartwig, S., Dragomirova, N., Kublik, A., Türkowsky, D., von Bergen, M., Lechner, U., Adrian, L., Sawers, R.G. (2017):
A H2-oxidizing, 1,2,3-trichlorobenzene-reducing multienzyme complex isolated from the obligately organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1
Environ. Microbiol. Rep. 9 (5), 618 - 625
Volltext (DOI) - Herberth, G., Pierzchalski, A., Feltens, R., Bauer, M., Röder, S., Olek, S., Hinz, D., Borte, M., von Bergen, M., Lehmann, I. (2017):
Prenatal phthalate exposure associates with low regulatory T-cell numbers and atopic dermatitis in early childhood: Results from the LINA mother-child study. Letter to the editor
J. Allergy Clin. Immunol. 139 (4), 1376 - 1379.e8
Volltext (DOI) - Herbold, C.W., Lehtovirta-Morley, L.E., Jung, M.-Y., Jehmlich, N., Hausmann, B., Han, P., Loy, A., Pester, M., Sayavedra-Soto, L.A., Rhee, S.-K., Prosser, J.I., Nicol, G.W., Wagner, M., Gubry-Rangin, C. (2017):
Ammonia-oxidising archaea living at low pH: Insights from comparative genomics
Environ. Microbiol. 19 , 4939 - 4952
Volltext (DOI) - Hoffmann, M., Gebauer, S., Nüchter, M., Baber, R., Ried, J., von Bergen, M., Kiess, W. (2017):
Endokrine Modulatoren. Hinweise aus epidemiologischen Studien bedürfen einer kritischen Überprüfung in Modellsystemen. Endocrine disruptors. Evidence from epidemiological studies necessitates a critical review of model systems
Bundesgesundheitsblatt-Gesund. 60 (6), 640 - 648
Volltext (DOI) - Jouy, F., Lohmann, N., Wandel, E., Ruiz-Gómez, G., Pisabarro, M.T., Beck-Sickinger, A.G., Schnabelrauch, M., Möller, S., Simon, J.C., Kalkhof, S., von Bergen, M., Franz, S. (2017):
Sulfated hyaluronan attenuates inflammatory signaling pathways in macrophages involving induction of antioxidants
Proteomics 17 (10), art. 1700082
Volltext (DOI) - Kadisch, M., Julsing, M.K., Schrewe, M., Jehmlich, N., Scheer, B., von Bergen, M., Schmid, A., Bühler, B. (2017):
Maximization of cell viability rather than biocatalyst activity improves whole-cell ω-oxyfunctionalization performance
Biotechnol. Bioeng. 114 (4), 874 - 884
Volltext (DOI) - Kallies, R., Kiesel, B., Schmidt, M., Kacza, J., Ghanem, N., Narr, A., Zopfi, J., Wick, L.Y., Hackermüller, J., Harms, H., Chatzinotas, A. (2017):
Complete genome sequence of Pseudoalteromonas phage vB_PspS-H40/1 (formerly H40/1) that infects Pseudoalteromonas sp. strain H40 and is used as biological tracer in hydrological transport studies
Stand. Genomic Sci. 12 , art. 20
Volltext (DOI) - Kauffmann, H.-M., Kamp, H., Fuchs, R., Chorley, B.N., Deferme, L., Ebbels, T., Hackermüller, J., Perdichizzi, S., Poole, A., Sauer, U.G., Tollefsen, K.E., Tralau, T., Yauk, C., van Ravenzwaay, B. (2017):
Framework for the quality assurance of ’omics technologies considering GLP requirements
Regul. Toxicol. Pharmacol. 91 (Suppl. 1), S27 - S35
Volltext (DOI) - Kiebist, J., Schmidtke, K.-U., Zimmermann, J., Kellner, H., Jehmlich, N., Ullrich, R., Zänder, D., Hofrichter, M., Scheibner, K. (2017):
A peroxygenase from Chaetomium globosum catalyzes the selective oxygenation of testosterone
ChemBioChem 18 (6), 563 - 569
Volltext (DOI) - Morawe, M., Hoeke, H., Wissenbach, D.K., Lentendu, G., Wubet, T., Kröber, E., Kolb, S. (2017):
Acidotolerant Bacteria and fungi as a sink of methanol-derived carbon in a deciduous forest soil
Front. Microbiol. 8 , 1361
Volltext (DOI) - Oberbach, A., Haange, S.-B., Schlichting, N., Heinrich, M., Lehmann, S., Till, H., Hugenholtz, F., Kullnick, Y., Smidt, H., Frank, K., Seifert, J., Jehmlich, N., von Bergen, M. (2017):
Metabolic in vivo labeling highlights differences of metabolically active microbes from the mucosal gastrointestinal microbiome between high-fat and normal chow diet
J. Proteome Res. 16 (4), 1593 - 1604
Volltext (DOI) - Pinaud, L., Ferrari, M.L., Friedman, R., Jehmlich, N., von Bergen, M., Phalipon, A., Sansonetti, P.J., Campbell-Valois, F.-X. (2017):
Identification of novel substrates of Shigella T3SA through analysis of its virulence plasmid-encoded secretome
PLOS One 12 (10), e0186920
Volltext (DOI) - Potratz, S., Tarnow, P., Jungnickel, H., Baumann, S., von Bergen, M., Tralau, T., Luch, A. (2017):
Combination of metabolomics with cellular assays reveals new biomarkers and mechanistic insights on xenoestrogenic exposures in MCF-7 cells
Chem. Res. Toxicol. 30 (4), 883 - 892
Volltext (DOI) - Raulien, N., Friedrich, K., Strobel, S., Rubner, S., Baumann, S., von Bergen, M., Körner, A., Krueger, M., Rossol, M., Wagner, U. (2017):
Fatty acid oxidation compensates for lipopolysaccharide-induced Warburg effect in glucose-deprived monocytes
Front. Immunol. 8 , art. 609
Volltext (DOI) - Rösch, C., Wissenbach, D.K., Franck, U., Wendisch, M., Schlink, U. (2017):
Degradation of indoor limonene by outdoor ozone: A cascade of secondary organic aerosols
Environ. Pollut. 226 , 463 - 472
Volltext (DOI) - Sauer, U.G., Deferme, L., Gribaldo, L., Hackermüller, J., Tralau, T., van Ravenzwaay, B., Yauk, C., Poole, C., Tong, W., Gant, T.W. (2017):
The challenge of the application of 'omics technologies in chemicals risk assessment: Background and outlook
Regul. Toxicol. Pharmacol. 91 (Suppl. 1), S14 - S26
Volltext (DOI) - Schubert, K., Olde Damink, S.W.M., von Bergen, M., Schaap, F.G. (2017):
Interactions between bile salts, gut microbiota, and hepatic innate immunity
Immunol. Rev. 279 (1), 23 - 35
Volltext (DOI) - Schulze, T., Ahel, M., Ahlheim, J., Aït-Aïssa, S., Brion, F., Di Paolo, C., Froment, J., Hidasi, A.O., Hollender, J., Hollert, H., Hu, M., Kloß, A., Koprivica, S., Krauss, M., Muz, M., Oswald, P., Petre, M., Schollée, J.E., Seiler, T.-B., Shao, Y., Slobodnik, J., Sonavane, M., Suter, M.J.-F., Tollefsen, K.E., Tousova, Z., Walz, K.-H., Brack, W. (2017):
Assessment of a novel device for onsite integrative large-volume solid phase extraction of water samples to enable a comprehensive chemical and effect-based analysis
Sci. Total Environ. 581–582 , 350 - 358
Volltext (DOI) - Schüttler, A., Reiche, K., Altenburger, R., Busch, W. (2017):
The transcriptome of the zebrafish embryo after chemical exposure: a meta-analysis
Toxicol. Sci. 157 (2), 291 - 304
Volltext (DOI) - Starke, R., Bastida, F., Abadía, J., García, C., Nicolás, E., Jehmlich, N. (2017):
Ecological and functional adaptations to water management in a semiarid agroecosystem: a soil metaproteomics approach
Sci. Rep. 7 , art. 10221
Volltext (DOI) - Starke, R., Müller, M., Gaspar, M., Marz, M., Küsel, K., Totsche, K.U., von Bergen, M., Jehmlich, N. (2017):
Candidate Brocadiales dominates C, N and S cycling in anoxic groundwater of a pristine limestone-fracture aquifer
J. Proteomics 152 , 153 - 160
Volltext (DOI) - Taubert, M., Grob, C., Howar, A.M., Burns, O.J., Pratscher, J., Jehmlich, N., von Bergen, M., Richnow, H.H., Chen, Y., Murrell, J.C. (2017):
Methylamine as a nitrogen source for microorganisms from a coastal marine environment
Environ. Microbiol. 19 (6), 2246 - 2257
Volltext (DOI) - Tautenhahn, H.-M., Brückner, S., Uder, C., Erler, S., Hempel, M., von Bergen, M., Brach, J., Winkler, S., Pankow, F., Gittel, C., Baunack, M., Lange, U., Broschewitz, J., Dollinger, M., Bartels, M., Pietsch, U., Amann, K., Christ, B. (2017):
Mesenchymal stem cells correct haemodynamic dysfunction associated with liver injury after extended resection in a pig model
Sci. Rep. 7 , art. 2617
Volltext (DOI) - Teumer, A., Qi, Q., Nethander, M., Aschard, H., Bandinelli, S., Beekman, M., Berndt, S.I., Bidlingmaier, M., Broer, L., Cappola, A., Ceda, G.P., Chanock, S., Chen, M.-H., Chen, T.C., Chen, Y.-D.I., Chung, J., Del Greco Miglianico, F., Eriksson, J., Ferrucci, L., Friedrich, N., Gnewuch, C., Goodarzi, M.O., Grarup, N., Guo, T., Hammer, E., Hayes, R.B., Hicks, A.A., Hofman, A., Houwing-Duistermaat, J.J., Hu, F., Hunter, D.J., Husemoen, L.L., Isaacs, A., Jacobs, K.B., Janssen, J.A.M.J.L., Jansson, J.-O., Jehmlich, N., Johnson, S., Juul, A., Karlsson, M., Kilpelainen, T.O., Kovacs, P., Kraft, P., Li, C., Linneberg, A., Liu, Y., Loos, R.J.F., Lorentzon, M., Lu, Y., Maggio, M., Magi, R., Meigs, J., Mellström, D., Nauck, M., Newman, A.B., Pollak, M.N., Pramstaller, P.P., Prokopenko, I., Psaty, B.M., Reincke, M., Rimm, R.B., Rotter, J.I., Saint Pierre, A., Schurmann, C., Seshadri, S., Sjögren, K., Slagboom, P.E., Strickler, H.D., Stumvoll, M., Suh, Y., Sun, Q., Zhang, C., Svensson, J., Tanaka, T., Tare, A., Tönjes, A., Uh, H.-W., van Duijn, C., van Heemst, D., Vandenput, L., Vasan, R.S., Völker, U., Willems, S.M., Ohlsson, C., Wallaschofski, H., Kaplan, R.C. (2017):
Erratum: Genomewide meta-analysis identifies loci associated with IGF-I and IGFBP-3 levels with impact on age-related traits (vol 15, pg 811, 2016)
Aging Cell 16 (4), 898
Volltext (DOI) - Tousova, Z., Oswald, P., Slobodnik, J., Blaha, L., Muz, M., Hu, M., Brack, W., Krauss, M., Di Paolo, C., Tarcai, Z., Seiler, T.-B., Hollert, H., Koprivica, S., Ahel, M., Schollée, J.E., Hollender, J., Suter, M.J.-F., Hidasi, A.O., Schirmer, K., Sonavane, M., Ait-Aissa, S., Creusot, N., Brion, F., Froment, J., Almeida, A.C., Thomas, K., Tollefsen, K.E., Tufi, S., Ouyang, X., Leonards, P., Lamoree, M., Torrens, V.O., Kolkman, A., Schriks, M., Spirhanzlova, P., Tindall, A., Schulze, T. (2017):
European demonstration program on the effect-based and chemical identification and monitoring of organic pollutants in European surface waters
Sci. Total Environ. 601-602 , 1849 - 1868
Volltext (DOI) - Warnke, M., Jacoby, C., Jung, T., Agne, M., Mergelsberg, M., Starke, R., Jehmlich, N., von Bergen, M., Richnow, H.-H., Brüls, T., Boll, M. (2017):
A patchwork pathway for oxygenase-independent degradation of side chain containing steroids
Environ. Microbiol. 19 (11), 4684 - 4699
Volltext (DOI) - Wewering, F., Jouy, F., Caliskan, S., Kalkhof, S., von Bergen, M., Luch, A., Zellmer, S. (2017):
Hepatic co-cultures in vitro reveal suitable to detect Nrf2-mediated oxidative stress responses on the bladder carcinogen o-anisidine
Toxicol. Vitro 40 , 153 - 160
Volltext (DOI) - Wewering, F., Jouy, F., Wissenbach, D.K., Gebauer, S., Blüher, M., Gebhardt, R., Pirow, R., von Bergen, M., Kalkhof, S., Luch, A., Zellmer, K. (2017):
Characterization of chemical-induced sterile inflammation in vitro: application of the model compound ketoconazole in a human hepatic co-culture system
Arch. Toxicol. 91 (2), 799 - 810
Volltext (DOI) - Winkler, S., Kalkhof, S., Brückner, S., Hempel, M., Baumann, S., von Bergen, M., Christ, B. (2017):
Metabolic fingerprint of an immunodeficient NASH mouse model and impact after stem cell therapy
J. Hepatol. 66 (1 (Suppl.)), S606 - S607
Volltext (DOI) - Winter, M., Thürmann, L., Gu, Z., Schüürmann, G., Herberth, G., Hinz, D., von Bergen, M., Harms, H., Olek, S., Röder, S., Borte, M., Eils, R., Lehmann, I., Trump, S. (2017):
The benzene metabolite 1,4-benzoquinone reduces regulatory T-cell function: A potential mechanism for tobacco smoke–associated atopic dermatitis
J. Allergy Clin. Immunol. 140 (2), 603 - 605
Volltext (DOI) - Yazbeck, A.M., Tout, K.R., Stadler, P.F., Hertel, J. (2017):
Towards a consistent, quantitative evaluation of microRNA evolution
J. Integr. Bioinform. 14 (1)
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- Aigner, A., Buesen, R., Gant, C., Gooderham, N., Greim, H., Hackermüller, J., Hubesch, B., Laffont, M., Marczylo, E., Meister, G., Petrick, J.S., Rasoulpour, R.J., Sauer, U.G., Schmidt, K., Seitz, H., Slack, F., Sukata, T., van der Vies, S.M., Verhaert, J., Witwer, K.W., Poole, A. (2016):
Advancing the use of noncoding RNA in regulatory toxicology: Report of an ECETOC workshop
Regul. Toxicol. Pharmacol. 82 , 127 - 139
Volltext (DOI) - Aurich, S., Seitz, A.-T., Tomm, J., Simon, J.-C., Treudler, R. (2016):
A case of anaphylaxis to patent blue in a patient with sentinel lymph node excision
Iran. J. Allergy Asthma Immunol. 15 (6), 547 - 550
Volltext (URL) - Bastida, F., Jehmlich, N. (2016):
It's all about functionality: How can metaproteomics help us to discuss the attributes of ecological relevance in soil?
J. Proteomics 144 , 159 - 161
Volltext (DOI) - Bastida, F., Jehmlich, N., Lima, K., Morris, B.E.L., Richnow, H.H., Hernández, T., von Bergen, M., García, C. (2016):
The ecological and physiological responses of the microbial community from a semiarid soil to hydrocarbon contamination and its bioremediation using compost amendment
J. Proteomics 135 , 162 - 169
Volltext (DOI) - Bastida, F., Torres, I.F., Moreno, J.L., Baldrian, P., Ondoño, S., Ruiz-Navarro, A., Hernández, T., Richnow, H.H., Starke, R., García, C., Jehmlich, N. (2016):
The active microbial diversity drives ecosystem multifunctionality and is physiologically related to carbon availability in Mediterranean semi-arid soils
Mol. Ecol. 25 (18), 4660 - 4673
Volltext (DOI) - Bauer, T., Trump, S., Ishaque, N., Thürmann, L., Gu, L., Bauer, M., Bieg, M., Gu, Z., Weichenhan, D., Mallm, J.-P., Röder, S., Herberth, G., Takada, E., Mücke, O., Winter, M., Junge, K.M., Grützmann, K., Rolle-Kampczyk, U., Wang, Q., Lawerenz, C., Borte, M., Polte, T., Schlesner, M., Schanne, M., Wiemann, S., Geörg, C., Stunnenberg, H.G., Plass, C., Rippe, K., Mizuguchi, J., Herrmann, C., Eils, R., Lehmann, I. (2016):
Environment-induced epigenetic reprogramming in genomic regulatory elements in smoking mothers and their children
Mol. Syst. Biol. 12 (3), art. 861
Volltext (DOI) - Bhattacharya, D.P., Canzler, S., Kehr, S., Hertel, J., Grosse, I., Stadler, P.F. (2016):
Phylogenetic distribution of plant snoRNA families
BMC Genomics 17 , art. 969
Volltext (DOI) - Braasch, I., Gehrke, A.R., Smith, J.J., Kawasaki, K., Manousaki, T., Pasquier, J., Amores, A., Desvignes, T., Batzel, P., Catchen, J., Berlin, A.M., Campbell, M.S., Barrell, D., Martin, K.J., Mulley, J.F., Ravi, V., Lee, A.P., Nakamura, T., Chalopin, D., Fan, S., Wcisel, D., Cañestro, C., Sydes, J., Beaudry, F.E.G., Sun, Y., Hertel, J., Beam, M.J., Fasold, M., Ishiyama, M., Johnson, J., Kehr, S., Lara, M., Letaw, J.H., Litman, G.W., Litman, R.T., Mikami, M., Ota, T., Saha, N.R., Williams, L., Stadler, P.F., Wang, H., Taylor, J.S., Fontenot, Q., Ferrara, A., Searle, S.M.J., Aken, B., Yandell, M., Schneider, I., Yoder, J.A., Volff, J.-N., Meyer, A., Amemiya, C.T., Venkatesh, B., Holland, P.W.H., Guiguen, Y., Bobe, J., Shubin, N.H., Di Palma, F., Alföldi, J., Lindblad-Toh, K., Postlethwait, J.H. (2016):
The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons
Nature Genet. 48 (4), 427 - 437
Volltext (DOI) - Canzler, S., Stadler, P.F., Hertel, J. (2016):
U6 snRNA intron insertion occurred multiple times during fungi evolution
RNA Biol. 13 (2), 119 - 127
Volltext (DOI) - de Araujo Oliveira, J.V., Costa, F., Backofen, R., Stadler, P.F., Walter, M.E.M.T., Hertel, J. (2016):
SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identification
BMC Bioinformatics 17 (Suppl 18), art. 464
Volltext (DOI) - Dey, P., Gola, D., Mishra, A., Malik, A., Kumar, P., Singh, D.K., Patel, N., von Bergen, M., Jehmlich, N. (2016):
Comparative performance evaluation of multi-metal resistant fungal strains for simultaneous removal of multiple hazardous metals
J. Hazard. Mater. 318 , 679 - 685
Volltext (DOI) - Dietrich, S., Floegel, A., Troll, M., Kühn, T., Rathmann, W., Peters, A., Sookthai, D., von Bergen, M., Kaaks, R., Adamski, J., Prehn, C., Boeing, H., Schulze, M.B., Illig, T., Pischon, T., Knüppel, S., Wang-Sattler, R., Drogan, D. (2016):
Random Survival Forest in practice: a method for modelling complex metabolomics data in time to event analysis
Int. J. Epidemiol. 45 (5), 1406 - 1420
Volltext (DOI) - Dragelj, J.L., Stanković, I.M., Božinovski, D.M., Meyer, T., Veljković, D.Ž., Medaković, V.B., Knapp, E.W., Zarić, S.D. (2016):
C–H/O interactions of aromatic CH donors within proteins: a crystallographic study
Cryst. Growth Des. 16 (4), 1948 - 1957
Volltext (DOI) - Els-Heindl, S., Kostelnik, K.B., Klöting, N., Baumann, S., von Bergen, M., Beck-Sickinger, A.G. (2016):
A palmitoylated ghrelin receptor ligand shows high metabolic invivo stability and bioavailability
Neuropeptides 55 , 1 - 12
Volltext (DOI) - Fontenot, Q., Ferrara, A., Searle, S.M.J., Aken, B., Yandell, M., Schneider, I., Yoder, J.A., Volff, J.-N., Meyer, A., Amemiya, C.T., Venkatesh, B., Holland, P.W.H., Guiguen, Y., Bobe, J., Shubin, N.H., Di Palma, F., Alföldi, J., Lindblad-Toh, K., Postlethwait, J.H., Martin, K.J., Mulley, J.F., Ravi, V., Lee, A.P., Nakamura, T., Chalopin, D., Fan, S., Wcisel, D., Cañestro, C., Sydes, J., Beaudry, F.E.G., Sun, Y., Hertel, J., Beam, M.J., Fasold, M., Ishiyama, M., Johnson, J., Kehr, S., Lara, M., Letaw, J.H., Litman, G.W., Litman, R.T., Mikami, M., Ota, T., Saha, N.R., Williams, L., Stadler, P.F., Wang, H., Taylor, J.S., Braasch, I., Gehrke, A.R., Smith, J.J., Kawasaki, K., Manousaki, T., Pasquier, J., Amores, A., Desvignes, T., Batzel, P., Catchen, J., Berlin, A.M., Campbell, M.S., Barrell, D. (2016):
Corrigendum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons (vol 48, pg 427, 2016). Corrected after print 25 April 2016
Nature Genet. 48 (6), 700 - 700
Volltext (DOI) - Förster, Y., Schmidt, J.R., Wissenbach, D.K., Pfeiffer, S.E.M., Baumann, S., Hofbauer, L.C., von Bergen, M., Kalkhof, S., Rammelt, S. (2016):
Microdialysis sampling from wound fluids enables quantitative assessment of cytokines, proteins, and metabolites reveals bone defect-specific molecular profiles
PLOS One 11 (7), e0159580
Volltext (DOI) - Gjesing Welinder, K., Hansen, R., Toft Overgaard, M., Brohus, M., Sønderkær, M., von Bergen, M., Rolle-Kampczyk, U., Otto, W., Lindahl, T.L., Arinell, K., Evans, A.L., Swenson, J.E., Revsbech, I.G., Frøbert, O. (2016):
Biochemical foundations of health and energy conservation in hibernating free-ranging subadult brown bear Ursus arctos
J. Biol. Chem. 291 , 22509 - 22523
Volltext (DOI) - Goris, T., Schiffmann, C.L., Gadkari, J., Adrian, L., von Bergen, M., Diekert, G., Jehmlich, N. (2016):
Proteomic data set of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates
Data Brief 8 , 637 - 642
Volltext (DOI) - Haange, S.-B., Jehmlich, N. (2016):
Proteomic interrogation of the gut microbiota: potential clinical impact
Expert Rev. Proteomics 13 (6), 535 - 537
Volltext (DOI) - Herbst, F.-A., Lünsmann, V., Kjeldal, H., Jehmlich, N., Tholey, A., von Bergen, M., Nielsen, J.L., Hettich, R.L., Seifert, J., Nielsen, P.H. (2016):
Enhancing metaproteomics—The value of models and defined environmental microbial systems
Proteomics 16 (5), 783 - 798
Volltext (DOI) - Hoeke, H., Roeder, S., Bertsche, T., Borte, M., von Bergen, M., Wissenbach, D.K. (2016):
Assessment of maternal drug intake by urinary bio monitoring during pregnancy and postpartally until the third perinatal year
Pharmacoepidemiol. Drug Saf. 25 (4), 431 - 437
Volltext (DOI) - Hoeke, H., Roeder, S., Mueller, A., Bertsche, T., Borte, M., Rolle-Kampczyk, U., von Bergen, M., Wissenbach, D.K. (2016):
Biomonitoring of prenatal analgesic intake and correlation with infantile anti-aeroallergens IgE
Allergy 71 (6), 901 - 906
Volltext (DOI) - Hörnig, F., Kohajda, T., Röder, S., Herberth, G., von Bergen, M., Borte, M., Diez, U., Rolle-Kampczyk, U., Simon, J.-C., Denburg, J.A., Lehmann, I., Junge, K.M. (2016):
The LINA study: higher sensitivity of infant compared to maternal eosinophil/basophil progenitors to indoor chemical exposures
J. Environ. Public Health 2016 , art. 5293932
Volltext (DOI) - Huber, K., Dänicke, S., Rehage, J., Sauerwein, H., Otto, W., Rolle-Kampczyk, U., von Bergen, M. (2016):
Metabotypes with properly functioning mitochondria and antiinflammation predict extended productive life span in dairy cows
Sci. Rep. 6 , art. 24642
Volltext (DOI) - Jehmlich, N., Vogt, C., Lünsmann, V., Richnow, H.H., von Bergen, M. (2016):
Protein-SIP in environmental studies
Curr. Opin. Biotechnol. 41 , 26 - 33
Volltext (DOI) - Kalkhof, S., Schildbach, S., Blumert, C., Horn, F., von Bergen, M., Labudde, D. (2016):
PIPINO: a software package to facilitate the identification of protein-protein interactions from affinity purification mass spectrometry data
Biomed Res. Int. 2016 , art. 2891918
Volltext (DOI) - Kenéz, Á., Dänicke, S., Rolle-Kampczyk, U., von Bergen, M., Huber, K. (2016):
A metabolomics approach to characterize phenotypes of metabolic transition from late pregnancy to early lactation in dairy cows
Metabolomics 12 (11), art. 165
Volltext (DOI) - Kjeldal, H., Zhou, N.A., Wissenbach, D.K., von Bergen, M., Gough, H.L., Nielsen, J.L. (2016):
Genomic, proteomic, and metabolite characterization of gemfibrozil-degrading organism Bacillus sp. GeD10
Environ. Sci. Technol. 50 (2), 744 - 755
Volltext (DOI) - Kublik, A., Deobald, D., Hartwig, S., Schiffmann, C.L., Andrades, A., von Bergen, M., Sawers, R.G., Adrian, L. (2016):
Identification of a multi-protein reductive dehalogenase complex in Dehalococcoides mccartyi strain CBDB1 suggests a protein-dependent respiratory electron transport chain obviating quinone involvement
Environ. Microbiol. 18 (9), 3044 - 3056
Volltext (DOI) - Kühn, T., Floegel, A., Sookthai, D., Johnson, T., Rolle-Kampczyk, U., Otto, W., von Bergen, M., Boeing, H., Kaaks, R. (2016):
Higher plasma levels of lysophosphatidylcholine 18:0 are related to a lower risk of common cancers in a prospective metabolomics study
BMC Med. 14 , art. 13
Volltext (DOI) - Kühn, T., Sookthai, D., Rolle-Kampczyk, U., Otto, W., Otto, W., von Bergen, M., Kaaks, R., Johnson, T. (2016):
Mid- and long-term correlations of plasma metabolite concentrations measured by a targeted metabolomics approach
Metabolomics 12 (12), art. 184
Volltext (DOI) - Lünsmann, V., Kappelmeyer, U., Benndorf, R., Martínez-Lavanchy, P.M., Taubert, A., Adrian, L., Duarte, M., Pieper, D.H., von Bergen, M., Müller, J.A., Heipieper, H.J., Jehmlich, N. (2016):
In situ protein-SIP highlights Burkholderiaceae as key players degrading toluene by para ring hydroxylation in a constructed wetland model
Environ. Microbiol. 18 (4), 1176 - 1186
Volltext (DOI) - Lünsmann, V., Kappelmeyer, U., Taubert, A., Nijenhuis, I., von Bergen, M., Heipieper, H.J., Müller, J.A., Jehmlich, N. (2016):
Aerobic toluene degraders in the rhizosphere of a constructed wetland model show diurnal polyhydroxyalkanoate metabolism
Appl. Environ. Microb. 82 (14), 4126 - 4132
Volltext (DOI) - Mahnke, H., Ballent, M., Baumann, S., Imperiale, F., von Bergen, M., Lanusse, C., Lifschitz, A.L., Honscha, W., Halwachs, S. (2016):
The ABCG2 efflux transporter in the mammary gland mediates veterinary drug secretion across the blood-milk barrier into milk of dairy cows
Drug Metab. Dispos. 44 (5), 700 - 708
Volltext (DOI) - Malik, A.A., Chowdhury, S., Schlager, V., Oliver, A., Puissant, J., Vazquez, P.G.M., Jehmlich, N., von Bergen, M., Griffiths, R.I., Gleixner, G. (2016):
Soil fungal:bacterial ratios are linked to altered carbon cycling
Front. Microbiol. 7 , art. 1247
Volltext (DOI) - Men, Y., Han, P., Helbling, D.E., Jehmlich, N., Herbold, C., Gulde, R., Onnis-Hayden, A., Gu, A.Z., Johnson, D.R., Wagner, M., Fenner, K. (2016):
Biotransformation of two pharmaceuticals by the ammonia-oxidizing archaeon Nitrososphaera gargensis
Environ. Sci. Technol. 50 (9), 4682 - 4692
Volltext (DOI) - Mussotter, F., Tomm, J.M., El Ali, Z., Pallardy, M., Kerdine-Römer, S., Götz, M., von Bergen, M., Haase, A., Luch, A. (2016):
Proteomics analysis of dendritic cell activation by contact allergens reveals possible biomarkers regulated by Nrf2
Toxicol. Appl. Pharmacol. 313 , 170 - 179
Volltext (DOI) - Oberbach, A., Adams, V., Schlichting, N., Heinrich, M., Kullnick, Y., Lehmann, S., Feder, S., Correia, J.C., Mohr, F.-W., Völker, U., Jehmlich, N. (2016):
Proteome profiles of HDL particles of patients with chronic heart failure are associated with immune response and also include bacteria proteins
Clin. Chim. Acta 453 , 114 - 122
Volltext (DOI) - Pham, H.T., Arnhard, K., Asad, Y.J., Deng, L., Felder, T.K., St. John-Williams, L., Kaever, V., Leadley, M., Mitro, N., Muccio, S., Prehn, C., Rauh, M., Rolle-Kampczyk, U., Thompson, J.W., Uhl, O., Ulaszewska, M., Vogeser, M., Wishart, D.S., Koal, T. (2016):
Inter-laboratory robustness of next-generation bile acid study in mice and humans: international ring trial involving 12 laboratories
J. Appl. Lab. Med. 1 (2), 129 - 142
Volltext (DOI) - Rabus, R., Boll, M., Heider, J., Meckenstock, R.U., Buckel, W., Einsle, O., Ermler, U., Golding, B.T., Gunsalus, R.P., Kroneck, P.M.H., Krüger, M., Lueders, T., Martins, B.M., Musat, F., Richnow, H.H., Schink, B., Seifert, J., Szaleniec, M., Treude, T., Ullmann, G.M., Vogt, C., von Bergen, M., Wilkes, H. (2016):
Anaerobic microbial degradation of hydrocarbons: from enzymatic reactions to the environment
J. Mol. Microbiol. Biotechnol. 26 (1-3), 5 - 28
Volltext (DOI) - Rolle-Kampczyk, U.E., Krumsiek, J., Otto, W., Röder, S.W., Kohajda, T., Borte, M., Theis, F., Lehmann, I., von Bergen, M. (2016):
Metabolomics reveals effects of maternal smoking on endogenous metabolites from lipid metabolism in cord blood of newborns
Metabolomics 12 (4), art. 76
Volltext (DOI) - Rother, S., Samsonov, S.A., Hofmann, T., Blaszkiewicz, J., Köhling, S., Moeller, S., Schnabelrauch, M., Rademann, J., Kalkhof, S., von Bergen, M., Pisabarro, M.T., Scharnweber, D., Hintze, V. (2016):
Structural and functional insights into the interaction of sulfated glycosaminoglycans with tissue inhibitor of metalloproteinase-3 – A possible regulatory role on extracellular matrix homeostasis
Acta Biomater. 45 , 143 - 154
Volltext (DOI) - Schaarschmidt, J., Nagel, M.B.M., Huth, S., Jaeschke, H., Moretti, R., Hintze, V., von Bergen, M., Kalkhof, S., Meiler, J., Paschke, R. (2016):
Rearrangement of the extracellular domain/extracellular loop 1 interface is critical for thyrotropin receptor activation
J. Biol. Chem. 291 , 14095 - 14108
Volltext (DOI) - Schaubeck, M., Clavel, T., Calasan, J., Lagkouvardos, I., Haange, S.B., Jehmlich, N., Basic, M., Dupont, A., Hornef, M., von Bergen, M., Bleich, A., Haller, D. (2016):
Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence
Gut 65 , 225 - 237
Volltext (DOI) - Schiffmann, C.L., Otto, W., Hansen, R., Nielsen, P.H., Adrian, L., Seifert, J., von Bergen, M., Jehmlich, N. (2016):
Proteomic dataset of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor
Data Brief 7 , 253 - 256
Volltext (DOI) - Schmidt, J.R., Kliemt, S., Preissler, C., Moeller, S., von Bergen, M., Hempel, U., Kalkhof, S. (2016):
Osteoblast-released matrix vesicles, regulation of activity and composition by sulfated and non-sulfated glycosaminoglycans
Mol. Cell. Proteomics 15 , 558 - 572
Volltext (DOI) - Schütze, N., Trojandt, S., Kuhn, S., Tomm, J.M., von Bergen, M., Simon, J.C., Polte, T. (2016):
Allergen-induced IL-6 regulates IL-9/IL-17A balance in CD4+ T cells in allergic airway inflammation
J. Immunol. 197 (7), 2653 - 2664
Volltext (DOI) - Starke, R., Keller, A., Jehmlich, N., Vogt, C., Richnow, H.H., Kleinsteuber, S., von Bergen, M., Seifert, J. (2016):
Pulsed 13C2-acetate protein-SIP unveils Epsilonproteobacteria as dominant acetate utilizers in a sulfate-reducing microbial community mineralizing benzene
Microb. Ecol. 71 (4), 901 - 911
Volltext (DOI) - Starke, R., Kermer, R., Ullmann-Zeunert, L., Baldwin, I.T., Seifert, J., Bastida, F., von Bergen, M., Jehmlich, N. (2016):
Bacteria dominate the short-term assimilation of plant-derived N in soil
Soil Biol. Biochem. 96 , 30 - 38
Volltext (DOI) - Tautenhahn, H.-M., Brückner, S., Baumann, S., Winkler, S., Otto, W., von Bergen, M., Bartels, M., Christ, B. (2016):
Attenuation of postoperative acute liver failure by mesenchymal stem cell treatment due to metabolic implications
Ann. Surg. 263 (3), 546 - 556
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Genomewide meta‐analysis identifies loci associated with IGF‐I and IGFBP‐3 levels with impact on age‐related traits
Aging Cell 15 (5), 811 - 824
Volltext (DOI) - Tiedt, O., Mergelsberg, M., Boll, K., Müller, M., Adrian, L., Jehmlich, N., von Bergen, M., Boll, M. (2016):
ATP-dependent C–F bond cleavage allows the complete degradation of 4-fluoroaromatics without oxygen
mBio 7 (4), e00990-16
Volltext (DOI) - Trump, S., Bieg, M., Gu, Z., Thürmann, L., Bauer, T., Bauer, M., Ishaque, N., Röder, S., Gu, L., Herberth, G., Lawerenz, C., Borte, M., Schlesner, M., Plass, C., Diessl, N., Eszlinger, M., Mücke, O., Elvers, H.-D., Wissenbach, D.K., von Bergen, M., Herrmann, C., Weichenhan, D., Wright, R.J., Lehmann, I., Eils, R. (2016):
Prenatal maternal stress and wheeze in children: novel insights into epigenetic regulation
Sci. Rep. 6 , art. 28616
Volltext (DOI) - Vogt, C., Lueders, T., Richnow, H.H., Krüger, M., von Bergen, M., Seifert, J. (2016):
Stable isotope probing approaches to study anaerobic hydrocarbon degradation and degraders
J. Mol. Microbiol. Biotechnol. 26 (1-3), 195 - 210
Volltext (DOI) - Vorreiter, F., Richter, S., Peter, M., Baumann, S., von Bergen, M., Tomm, J.M. (2016):
Comparison and optimization of methods for the simultaneous extraction of DNA, RNA, proteins, and metabolites
Anal. Biochem. 508 , 25 - 33
Volltext (DOI) - Warnke, M., Jung, T., Dermer, J., Hipp, K., Jehmlich, N., von Bergen, M., Ferlaino, S., Fries, A., Müller, M., Boll, M. (2016):
25-hydroxyvitamin D3 synthesis by enzymatic steroid side-chain hydroxylation with water
Angew. Chem.-Int. Edit. 55 (5), 1881 - 1884
Volltext (DOI) - Winkler, S., Kalkhof, S., Brückner, S., Hempel, M., Baumann, S., von Bergen, M., Christ, B. (2016):
Identification of molecular pathways for stem cell therapy of non-alcoholic steatohepatitis in an immunodeficient mouse model
J. Hepatol. 64 (2 (Suppl.)), S683
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Optimization of metabolomics of defined in vitro gut microbial ecosystems
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Long-term indoor VOC concentrations assessment a trend analysis of distribution, disposition, and personal exposure in cohort study samples
Air Qual. Atmos. Health 9 (8), 941 - 950
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Influence of agglomeration and specific lung lining lipid/protein interaction on short-term inhalation toxicity
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A cleavable cytolysin–neuropeptide Y bioconjugate enables specific drug delivery and demonstrates intracellular mode of action
J. Control. Release 209 , 170 - 178
Volltext (DOI) - Bargiela, R., Herbst, F.-A., Martínez-Martínez, M., Seifert, J., Rojo, D., Cappello, S., Genovese, M., Crisafi, F., Denaro, R., Chernikova, T.N., Barbas, C., von Bergen, M., Yakimov, M.M., Ferrer, M., Golyshin, P.N. (2015):
Metaproteomics and metabolomics analyses of chronically petroleum-polluted sites reveal the importance of general anaerobic processes uncoupled with degradation
Proteomics 15 (20), 3508 - 3520
Volltext (DOI) - Bastida, F., García, C., von Bergen, M., Moreno, J.L., Richnow, H.H., Jehmlich, N. (2015):
Deforestation fosters bacterial diversity and the cyanobacterial community responsible for carbon fixation processes under semiarid climate: a metaproteomics study
Appl. Soil Ecol. 93 , 65 - 67
Volltext (DOI) - Beyer, A., Baumann, S., Scherz, G., Stahl, J., von Bergen, M., Friese, A., Roesler, U., Kietzmann, M., Honscha, W. (2015):
Effects of ceftiofur treatment on the susceptibility of commensal porcine E.coli – comparison between treated and untreated animals housed in the same stable
BMC Vet. Res. 11 , art. 265
Volltext (DOI) - Brückner, S., Tautenhahn, H.-M., Baumann, S., Winkler, S., Bartels, M., von Bergen, M., Christ, B. (2015):
Mesenchymal stem cells (MSC) prevent liver failure after huge liver resection in rat
Transplantation 99 (7S), 267
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Complete nitrification by Nitrospira bacteria
Nature 528 (7583), 504 - 509
Volltext (DOI) - Goris, T., Schiffmann, C.L., Gadkari, J., Schubert, T., Seifert, J., Jehmlich, N., von Bergen, M., Diekert, G. (2015):
Proteomics of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates
Sci. Rep. 5 , art. 13794
Volltext (DOI) - Grob, C., Taubert, M., Howat, A.M., Burns, O.J., Dixon, J.L., Richnow, H.H., Jehmlich, N., von Bergen, M., Chen, Y., Murrell, J.C. (2015):
Combining metagenomics with metaproteomics and stable isotope probing reveals metabolic pathways used by a naturally occurring marine methylotroph
Environ. Microbiol. 17 (10), 4007 - 4018
Volltext (DOI) - Halwachs, S., Mahnke, H., Ballent, M., Baumann, S., von Bergen, M., Viviani, P., Lanusse, C., Honscha, W., Lifschitz, A. (2015):
ABCG2-mediated transport of anthelmintic drugs in the mammary gland of dairy cows
J. Vet. Pharmacol. Ther. 38 (S1), 43 - 44
Volltext (DOI) - Hartwig, S., Thomas, C., Krumova, N., Quitzke, V., Türkowsky, D., Jehmlich, N., Adrian, L., Sawers, R.G. (2015):
Heterologous complementation studies in Escherichia coli with the Hyp accessory protein machinery from Chloroflexi provide insight into [NiFe]-hydrogenase large subunit recognition by the HypC protein family
Microbiology-(UK) 161 (11), 2204 - 2219
Volltext (DOI) - Herberth, G., Offenberg, K., Rolle-Kampczyk, U., Bauer, M., Otto, W., Röder, S., Grützmann, K., Sack, E., Simon, J.-C., Borte, M., von Bergen, M., Lehmann, I. (2015):
Endogenous metabolites and inflammasome activity in early childhood and links to respiratory diseases
J. Allergy Clin. Immunol. 136 (2), 495 - 497
Volltext (DOI) - Hoeke, H., Roeder, S., Bertsche, T., Lehmann, I., Borte, M., von Bergen, M., Wissenbach, D.K. (2015):
Monitoring of drug intake during pregnancy by questionnaires and LC-MS/MS drug urine screening: evaluation of both monitoring methods
Drug Test. Anal. 7 (8), 695 - 702
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Protein structure prediction guided by crosslinking restraints – A systematic evaluation of the impact of the crosslinking spacer length
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Structural analysis of the interleukin-8/glycosaminoglycan interactions by amide hydrogen/deuterium exchange mass spectrometry
Methods 89 , 45 - 53
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CO2BioPerm — influence of bio-geochemical CO2-transformation processes on the long-term permeability
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Integration of conventional quantitative and phospho-proteomics reveals new elements in activated Jurkat T-cell receptor pathway maintenance
Proteomics 15 (1), 25 - 33
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J. Proteome Res. 14 (1), 164 - 182
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Metagenome-based metabolic reconstruction revealsthe ecophysiological function of Epsilonproteobacteria in a hydrocarbon-contaminated sulfidic aquifer
Front. Microbiol. 6 , art. 1396
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Dissecting the genetics of the human transcriptome identifies novel trait-related trans-eQTLs and corroborates the regulatory relevance of non-protein coding loci
Hum. Mol. Genet. 24 (16), 4746 - 4763
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Di-(2-ethylhexyl)-phthalate (DEHP) causes impaired adipocyte function and alters serum metabolites
PLOS One 10 (12), e0143190
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High metabolic in vivo stability and bioavailability of a palmitoylated ghrelin receptor ligand assessed by mass spectrometry
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Anaerobic naphthalene degradation by sulfate-reducing Desulfobacteraceae from various anoxic aquifers
FEMS Microbiol. Ecol. 91 (3), fiv006
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A glycosyl hydrolase family 16 gene is responsible for the endogenous production of β-1,3-glucanases within decapod crustaceans
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Appl. Environ. Microb. 81 (18), 6241 - 6252
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Gesundheitsrisiko Schimmelpilze
Leipzigs Wandel im Spiegel der Stadtforschung am UFZ
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Stable isotope labeling by amino acids in cell culture based proteomics reveals differences in protein abundances between spiral and coccoid forms of the gastric pathogen Helicobacter pylori
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Comparison of splice sites reveals that long noncoding RNAs are evolutionarily well conserved
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Reference proteome of highly purified human Th1 cells reveals strong effects on metabolism and protein ubiquitination upon differentiation
Proteomics 15 (21), 3644 - 3647
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Cyanate as an energy source for nitrifiers
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Appl. Environ. Microb. 81 (2), 587 - 596
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Validation of a multi-analyte HPLC-DAD method for determination of uric acid, creatinine, homovanillic acid, niacinamide, hippuric acid, indole-3-acetic acid and 2-methylhippuric acid in human urine
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MetaProSIP: Automated inference of stable isotope incorporation rates in proteins for functional metaproteomics
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Transmissive Crohn's disease-like ileitis is caused by functional dysbiosis in the intestinal microbiota independent of inflammation-driven Paneth cell failure
J. Crohns Colitis 9 (Suppl. 1), S1 - S1
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Occurrence of cephalosporin resistant and ESBL-producing commensal Escherichia coli in the microbiota from swine treated with ceftiofur
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Selenocysteine-independent suppression of UGA codons in the archaeon Methanococcus maripaludis
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Context-specific metabolic network reconstruction of a naphthalene-degrading bacterial community guided by metaproteomic data
Bioinformatics 31 (11), 1771 - 1779
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Validierung des Modells der durch eine Methionin-Cholin-freie Diät induzierten Nicht-alkoholischer Steatohepatitis (NASH) durch Proteomanalysen
Zeitschrift für Gastroenterologie 53 , KG090, 883
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Compartment resolved reference proteome map from highly purified naïve, activated, effector, and memory CD8+ murine immune cells
Proteomics 15 (11), 1808 - 1812
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Characterization of the microbial community in biological soil crusts dominated by Fulgensia desertorum (Tomin) Poelt and Squamarina cartilaginea (With.) P. James and in the underlying soil
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Subtoxic concentrations of benzo[a]pyrene induce metabolic changes and oxidative stress in non-activated and affect the mTOR pathway in activated Jurkat T cells
Journal of Integrated OMICS 4 (1), 11 - 20
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A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection
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Metabolomic biomarkers correlating with hepatic lipidosis in dairy cows
BMC Vet. Res. 10 , art. 122
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The acclimation of Phaeodactylum tricornutum to blue and red light does not influence the photosynthetic light reaction but strongly disturbs the carbon allocation pattern
PLOS One 9 (8), e99727
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The LINA cohort: cord blood eosinophil/basophil progenitors predict respiratory outcomes in early infancy
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Identification of lipidomic biomarkers for coexposure to subtoxic doses of benzo[a]pyrene and cadmium: the toxicological cascade biomarker approach
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Proteomics and metabolomics for in situ monitoring of wound healing
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Subpopulation-proteomics reveal growth rate, but not cell cycling, as a major impact on protein composition in Pseudomonas putida KT2440
AMB Express 4 , art. 71
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A proteomics approach to elucidate the role of Nrf2 in primary bone-marrow-derived dendritic cells of mice upon activation by contact allergens
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A global proteome approach in uric acid stimulated human aortic endothelial cells revealed regulation of multiple major cellular pathways
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Long non-coding RNAs differentially expressed between normal versus primary breast tumor tissues disclose converse changes to breast cancer-related protein-coding genes
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Identification of differences in the whole saliva baseline proteome profile that are associated with development of oral mucositis in head and neck cancer patients during treatment with IMRT
Strahlenther. Onkol. 190 (Suppl. 1), 142
Volltext (DOI) - Torres, I.F., Bastida, F., Hernández, T., Bombach, P., Richnow, H.H., García, C. (2014):
The role of lignin and cellulose in the carbon-cycling of degraded soils under semiarid climate and their relation to microbial biomass
Soil Biol. Biochem. 75 , 152 - 160
Volltext (DOI) - Uhlmann, K., Gibb, S., Kalkhof, S., Arroyo-Abad, U., Schulz, C., Hoffmann, B., Stubbins, F., Carpenter, S., Beer, M., von Bergen, M., Feltens, R. (2014):
Species determination of Culicoides biting midges via peptide profiling using matrix-assisted laser desorption ionization mass spectrometry
Parasites Vectors 7 , 392
Volltext (DOI)
2013 (37)
- Baumann, S., Kalkhof, S., Hackermüller, J., Otto, W., Tomm, J.M., Wissenbach, D.K., Rolle-Kampczyk, U., von Bergen, M. (2013):
Requirements and perspectives for integrating metabolomics with other omics data
Current Metabolomics 1 (1), 15 - 27
Volltext (DOI) - Blumert, C., Kalkhof, S., Brocke-Heidrich, K., Kohajda, T., von Bergen, M., Horn, F. (2013):
Analysis of the STAT3 interactome using in-situ biotinylation and SILAC
J. Proteomics 94 , 370 - 386
Volltext (DOI) - Bodelier, P.L.E., Meima-Franke, M., Hordijk, C.A., Steenbergh, A.K., Hefting, M.E., Bodrossy, L., von Bergen, M., Seifert, J. (2013):
Microbial minorities modulate methane consumption through niche partitioning
ISME J. 7 (11), 2214 - 2228
Volltext (DOI) - Boll, K., Reiche, K., Kasack, K., Mörbt, N., Kretzschmar, A.K., Tomm, J.M., Verhaegh, G., Schalken, J., von Bergen, M., Horn, F., Hackermüller, J. (2013):
MiR-130a, miR-203 and miR-205 jointly repress key oncogenic pathways and are downregulated in prostate carcinoma
Oncogene 32 , 277 - 285
Volltext (DOI) - Eberlein, C., Estelmann, S., Seifert, J., von Bergen, M., Müller, M., Meckenstock, R.U., Boll, M. (2013):
Identification and characterization of 2-naphthoyl-coenzyme A reductase, the prototype of a novel class of dearomatizing reductases
Mol. Microbiol. 88 (5), 1032 - 1039
Volltext (DOI) - Ferrer, M., Ruiz, A., Lanza, F., Haange, S.-B., Oberbach, A., Till, H., Bargiela, R., Campoy, C., Segura, M.T., Richter, M., von Bergen, M., Seifert, J., Suarez, A. (2013):
Microbiota from the distal guts of lean and obese adolescents exhibit partial functional redundancy besides clear differences in community structure
Environ. Microbiol. 15 (1), 211 - 226
Volltext (DOI) - Guazzaroni, M.-E., Herbst, F.-A., Lores, I., Tamames, J., Peláez, A.I., López-Cortés, N., Alcaide, M., del Pozo, M.V., Vieites, J.M., von Bergen, M., Gallego, J.L.R., Bargiela, R., López-López, A., Pieper, D.H., Rosselló-Móra, R., Sánchez, J., Seifert, J., Ferrer, M. (2013):
Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation
ISME J. 7 (1), 122 - 136
Volltext (DOI) - Herberth, G., Bauer, M., Gasch, M., Hinz, D., Röder, S., Olek, S., Kohajda, T., Rolle-Kampczyk, U., von Bergen-Tomm, M., Sack, U., Borte, M., Lehmann, I. (2013):
Maternal and cord blood miR-223 expression associates with prenatal tobacco smoke exposure and with low Treg numbers
Allergy 68 (Suppl. 97), 628 - 628
Volltext (DOI) - Herbst, F.-A., Bahr, A., Duarte, M., Pieper, D.H., Richnow, H.-H., von Bergen, M., Seifert, J., Bombach, P. (2013):
Elucidation of in situ polycyclic aromatic hydrocarbon degradation by functional metaproteomics (protein-SIP)
Proteomics 13 (18-19), 2910 - 2920
Volltext (DOI) - Herbst, F.-A., Taubert, M., Jehmlich, N., Behr, T., Schmidt, F., von Bergen, M., Seifert, J. (2013):
Sulfur-34S stable isotope labeling of amino acids for quantification (SULAQ34) of proteomic changes in Pseudomonas fluorescens during naphthalene degradation
Mol. Cell. Proteomics 12 (8), 2060 - 2069
Volltext (DOI) - Hessling, B., Bonn, F., Otto, A., Herbst, F.-A., Rappen, G.-M., Bernhardt, J., Hecker, M., Becher, D. (2013):
Global proteome analysis of vancomycin stress in Staphylococcus aureus
Int. J. Med. Microbiol. 303 (8), 624 - 634
Volltext (DOI) - Jahn, M., Seifert, J., Hübschmann, T., von Bergen, M., Harms, H., Müller, S. (2013):
Comparison of preservation methods for bacterial cells in cytomics and proteomics
Journal of Integrated OMICS 3 (1), 25 - 33
Volltext (DOI) - Jahn, M., Seifert, J., von Bergen, M., Schmid, A., Bühler, B., Müller, S. (2013):
Subpopulation-proteomics in prokaryotic populations
Curr. Opin. Biotechnol. 24 (1), 79 - 87
Volltext (DOI) - Jechalke, S., Franchini, A., Bastida, F., Bombach, P., Rosell, M., Seifert, J., von Bergen, M., Vogt, C., Richnow, H.H. (2013):
Analysis of structure, function, and activity of a benzene-degrading microbial community
FEMS Microbiol. Ecol. 85 (1), 14 - 26
Volltext (DOI) - Kliemt, S., Lange, C., Otto, W., Hintze, V., Möller, S., von Bergen, M., Hempel, U., Kalkhof, S. (2013):
Sulfated hyaluronan containing collagen matrices enhance cell-matrix-interaction, endocytosis, and osteogenic differentiation of human mesenchymal stromal cells
J. Proteome Res. 12 (1), 378 - 389
Volltext (DOI) - Kung, J.W., Seifert, J., von Bergen, M., Boll, M. (2013):
Cyclohexanecarboxyl-coenzyme A (CoA) and cyclohex-1-ene-1-carboxyl-CoA dehydrogenases, two enzymes involved in the fermentation of benzoate and crotonate in Syntrophus aciditrophicus
J. Bacteriol. 195 (14), 3193 - 3200
Volltext (DOI) - Leibeling, S., Maeß, M.B., Centler, F., Kleinsteuber, S., von Bergen, M., Thullner, M., Harms, H., Müller, R.H. (2013):
Posttranslational oxidative modification of (R)-2-(2,4-dichlorophenoxy)propionate/α-ketoglutarate-dependent dioxygenases (RdpA) leads to improved degradation of 2,4-dichlorophenoxyacetate (2,4-D)
Eng. Life Sci. 13 (3), 278 - 291
Volltext (DOI) - Markle, J.G.M., Frank, D.N., Mortin-Toth, S., Robertson, C.E., Feazel, L.M., Rolle-Kampczyk, U., von Bergen, M., McCoy, C.D., Macpherson, A.J., Danska, J.S. (2013):
Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity
Science 339 (6123 ), 1084 - 1088
Volltext (DOI) - Möbius, K., Nordsieck, K., Pichert, A., Samsonov, S.A., Thomas, L., Schiller, J., Kalkhof, S., Pisabarro, M.T., Beck-Sickinger, A.G., Huster, D. (2013):
Investigation of lysine side chain interactions of interleukin-8 with heparin and other glycosaminoglycans studied by a methylation-NMR approach
Glycobiology 23 (11), 1260 - 1269
Volltext (DOI) - Mueller, A., Schlink, U., Wichmann, G., Bauer, M., Graebsch, C., Schüürmann, G., Herbarth, O. (2013):
Individual and combined effects of mycotoxins from typical indoor moulds
Toxicol. Vitro 27 (6), 1970 - 1978
Volltext (DOI) - Müller, S.A., Findeiß, S., Pernitzsch, S.R., Wissenbach, D.K., Stadler, P.F., Hofacker, I.L., von Bergen, M., Kalkhof, S. (2013):
Identification of new protein coding sequences and signal peptidase cleavage sites of Helicobacter pylori strain 26695 by proteogenomics
J. Proteomics 86 , 27 - 42
Volltext (DOI) - Murugaiyan, J., Rockstroh, M., Wagner, J., Baumann, S., Schorsch, K., Trump, S., Lehmann, I., von Bergen, M., Tomm, J.M. (2013):
Benzo[a]pyrene affects Jurkat T cells in the activated state via the antioxidant response element dependent Nrf2 pathway leading to decreased IL-2 secretion and redirecting glutamine metabolism
Toxicol. Appl. Pharmacol. 269 (3), 307 - 316
Volltext (DOI) - Murugaiyan, J., Weise, C., von Bergen, M., Roesler, U. (2013):
Two-dimensional proteome reference map of Prototheca zopfii revealed reduced metabolism and enhanced signal transduction as adaptation to an infectious life style
Proteomics 13 (17), 2664 - 2669
Volltext (DOI) - Murugesan, K., Baumann, S., Wissenbach, D.K., Kliemt, S., Kalkhof, S., Otto, W., Mögel, I., Kohajda, T., von Bergen, M., Tomm, J.M. (2013):
Subtoxic and toxic concentrations of benzene and toluene induce Nrf-2 mediated anti-oxidative stress response and affect the central carbon metabolism in lung epithelial cells A549
Proteomics 13 (21), 3211 - 3221
Volltext (DOI) - Pérez-Cobas, A.E., Gosalbes, M.J., Friedrichs, A., Knecht, H., Artacho, A., Eismann, K., Otto, W., Rojo, D., Bargiela, R., von Bergen, M., Neulinger, S.C., Däumer, C., Heinsen, F.A., Latorre, A., Barbas, C., Seifert, J., Martins dos Santos, V., Ott, S.J., Ferrer, M., Moya, A. (2013):
Gut microbiota disturbance during antibiotic therapy: a multi-omic approach
Gut 62 , 1591 - 1601
Volltext (DOI) - Schipp, C.-J., Marco-Urrea, E., Kublik, A., Seifert, J., Adrian, L. (2013):
Organic cofactors in the metabolism of Dehalococcoides mccartyi strains
Philos. Trans. R. Soc. B-Biol. Sci. 368 (1616), 20120321
Volltext (DOI) - Seifert, J., Herbst, F.-A., Nielsen, P.H., Planes, F.J., Ferrer, M., von Bergen, M. (2013):
Bioinformatic progress and applications in metaproteogenomics for bridging the gap between genomic sequences and metabolic functions in microbial communities
Proteomics 13 (18-19), 2786 - 2804
Volltext (DOI) - Siegert, M., Taubert, M., Seifert, J., von Bergen-Tomm, M., Basen, M., Bastida, F., Gehre, M., Richnow, H.-H., Krüger, M. (2013):
The nitrogen cycle in anaerobic methanotrophic mats of the Black Sea is linked to sulfate reduction and biomass decomposition
FEMS Microbiol. Ecol. 86 (2), 231 - 245
Volltext (DOI) - Tang, S., Chan, W.W.M., Fletcher, K.E., Seifert, J., Liang, X., Löffler, F.E., Edwards, E.A., Adrian, L. (2013):
Functional characterization of reductive dehalogenases using blue native polyacrylamide gel electrophoresis
Appl. Environ. Microb. 79 (3), 974 - 981
Volltext (DOI) - Taubert, M., von Bergen-Tomm, M., Seifert, J. (2013):
Limitations in detection of 15N incorporation by mass spectrometry in protein-based stable isotope probing (protein-SIP)
Anal. Bioanal. Chem. 405 (12), 3989 - 3996
Volltext (DOI) - Tomm, J.M., Krause, C., Simon, J.C., Treudler, R., von Bergen, M., Averbeck, M. (2013):
Pyruvate kinase and phosphopyruvate hydratase as novel IgE reactive proteins in prawn
J. Invest. Allergol. Clin. Immunol. 23 (6), 443 - 445 - Tomm, J.M., Otto, W., Servos, U., Bertram, B., von Bergen, M., Baumann, S. (2013):
Starvation of Jurkat T cells causes metabolic switch from glycolysis to lipolysis as revealed by comprehensive GC-qMS
Journal of Integrated OMICS 3 (1), 70 - 74
Volltext (DOI) - Tomm, J.M., van Do, T., Jende, C., Simon, J.C., Treudler, R., von Bergen, M., Averbeck, M. (2013):
Identification of new potential allergens from Nile perch (Lates niloticus) and Cod (Gadus morhua)
J. Invest. Allergol. Clin. Immunol. 23 (3), 159 - 167 - von Bergen, M., Jehmlich, N., Taubert, M., Vogt, C., Bastida, F., Herbst, F.-A., Schmidt, F., Richnow, H.-H., Seifert, J. (2013):
Insights from quantitative metaproteomics and protein-stable isotope probing into microbial ecology
ISME J. 7 (10), 1877 - 1885
Volltext (DOI) - Weisse, K., Herberth, G., Röder, S., Borte, M., Heroux, D., Denburg, J., Lehmann, I. (2013):
Eosinophil/basophil (Eo/B) progenitors in cord blood (CB) predict respiratory outcomes in early infancy
Allergy 68 (Suppl. 97), 53 - 53
Volltext (DOI) - Weisse, K., Winkler, S., Hirche, F., Herberth, G., Hinz, D., Bauer, M., Röder, S., Rolle-Kampczyk, U., von Bergen, M., Olek, S., Richter, T., Diez, U., Borte, M., Stangl, G.I., Lehmann, I. (2013):
Maternal and newborn vitamin D status and its impact on food allergy development in the German LINA cohort study
Allergy 68 (2), 220 - 228
Volltext (DOI) - Will, S., Siebauer, M.F., Heyne, S., Engelhardt, J., Stadler, P.F., Reiche, K., Backofen, R. (2013):
LocARNAscan: Incorporating thermodynamic stability in sequence and structure-based RNA homology search
Algorithms Mol. Biol. 8 , art. 14
Volltext (DOI)
2012 (35)
- Abburi, R., Kalkhof, S., Oehme, R., Kiontke, A., Birkemeyer, C. (2012):
Artifacts in amine analysis from anodic oxidation of organic solvents upon electrospray ionization for mass spectrometry
Eur. J. Mass Spectrom. 18 (3), 301 - 312
Volltext (DOI) - Baumgarten, T., Sperling, S., Seifert, J., von Bergen, M., Steiniger, F., Wick, L.Y., Heipieper, H.J. (2012):
Membrane vesicle formation as a multiple-stress response mechanism enhances Pseudomonas putida DOT-T1E cell surface hydrophobicity and biofilm formation
Appl. Environ. Microb. 78 (17), 6217 - 6224
Volltext (DOI) - Blaschke, U., Eismann, K., Böhme, A., Paschke, A., Schüürmann, G. (2012):
Structural alerts for the excess toxicity of acrylates, methacrylates, and propiolates derived from their short-term and long-term bacterial toxicity
Chem. Res. Toxicol. 25 (1), 170 - 180
Volltext (DOI) - Bönisch, U., Böhme, A., Kohajda, T., Mögel, I., Schütze, N., von Bergen, M., Simon, J.C., Lehmann, I., Polte, T. (2012):
Volatile organic compounds enhance allergic airway inflammation in an experimental mouse model
PLoS One 7 (7), e39817
Volltext (DOI) - Bozinovski, D., Herrmann, S., Richnow, H.-H., von Bergen, M., Seifert, J., Vogt, C. (2012):
Functional analysis of an anaerobic m-xylene-degrading enrichment culture using protein-based stable isotope probing
FEMS Microbiol. Ecol. 81 (1), 134 - 144
Volltext (DOI) - Goettsch, C., Kliemt, S., Sinningen, K., von Bergen, M., Hofbauer, L.C., Kalkhof, S. (2012):
Quantitative proteomics reveals novel functions of osteoclast-associated receptor in STAT signaling and cell adhesion in human endothelial cells
J. Mol. Cell. Cardiol. 53 (6), 829 - 837
Volltext (DOI) - Gündel, U., Kalkhof, S., Zitzkat, D.P., von Bergen, M., Altenburger, R., Küster, E. (2012):
Concentration-response concept in ecotoxicoproteomics: effects of different phenanthrene concentrations to the zebrafish (Danio rerio) embryo proteome
Ecotox. Environ. Safe. 76 (1), 11 - 22
Volltext (DOI) - Haange, S.-B., Oberbach, A., Schlichting, N., Hugenholtz, F., Smidt, H., von Bergen, M., Till, H., Seifert, J. (2012):
Metaproteome analysis and molecular genetics of rat intestinal microbiota reveals section and localisation resolved species distribution and enzymatic functionalities
J. Proteome Res. 11 (11), 5406 - 5417
Volltext (DOI) - Haas, S., Jahnke, H.-G., Moerbt, N., von Bergen, M., Aharinejad, S., Andrukhova, O., Robitzki, A.A. (2012):
DIGE proteome analysis reveals suitability of ischemic cardiac in vitro model for studying cellular response to acute ischemia and regeneration
PLoS One 7 (2), e31669
Volltext (DOI) - Hörnig, F., Weisse, K., Röder, S., Kohajda, T., von Bergen-Tomm, M., Borte, M., Diez, U., Simon, J., Denburg, J., Lehmann, I. (2012):
Infantile eosinophil/basophil progenitors are more sensitive to indoor chemical exposures compared to their mothers
Allergy 67 (Suppl. 96), 574 - 574
Volltext (DOI) - Jehmlich, N., Kopinke, F.-D., Lenhard, S., Vogt, C., Herbst, F.-A., Seifert, J., Lissner, U., Völker, U., Schmidt, F., von Bergen, M. (2012):
Sulfur-36S stable isotope labeling of amino acids for quantification (SULAQ)
Proteomics 12 (1), 37 - 42
Volltext (DOI) - Kermer, R., Hedrich, S., Taubert, M., Baumann, S., Schlömann, M., Johnson, D.B., Seifert, J. (2012):
Elucidation of carbon transfer in a mixed culture of Acidiphilium cryptum and Acidithiobacillus ferrooxidans using protein-based stable isotope probing
Journal of Integrated OMICS 2 (1), 37 - 45
Volltext (DOI) - Kespohl, S., Kotschy-Lang, N., Tomm, J.M., von Bergen, M., Maryska, S., Brüning, T., Raulf-Heimsoth, M. (2012):
Occupational IgE-mediated softwood allergy: characterization of the causative allergen
Int. Arch. Allergy Immunol. 157 (2), 202 - 208
Volltext (DOI) - Lipstein, N., Schaks, S., Dimova, K., Kalkhof, S., Ihling, C., Kolbel, K., Ashery, U., Rhee, J., Brose, N., Sinz, A., Jahn, O. (2012):
Non-conserved Ca2+/calmodulin binding sites in Munc13s differentially control synaptic short-term plasticity
Mol. Cell. Biol. 32 (22), 4628 - 4641
Volltext (DOI) - Marco-Urrea, E., Seifert, J., von Bergen, M., Adrian, L. (2012):
Stable isotope peptide mass spectrometry to decipher amino acid metabolism in Dehalococcoides strain CBDB1
J. Bacteriol. 194 (16), 4169 - 4177
Volltext (DOI) - Morris, B.E.L., Herbst, F.-A., Bastida, F., Seifert, J., von Bergen, M., Richnow, H.-H., Suflita, J.M. (2012):
Microbial interactions during residual oil and n-fatty acid metabolism by a methanogenic consortium
Environ. Microbiol. Rep. 4 (3), 297 - 306
Volltext (DOI) - Müller, A. (2012):
Schimmelpilzexposition im Innenraum und deren gesundheitlichen Auswirkungen
Dissertation, Universität Leipzig
96 S. - Müller, S.A., van der Smissen, A., von Feilitzsch, M., Anderegg, U., Kalkhof, S., von Bergen, M. (2012):
Quantitative proteomics reveals altered expression of extracellular matrix related proteins of human primary dermal fibroblasts in response to sulfated hyaluronan and collagen applied as artificial extracellular matrix
J. Mater. Sci.-Mater. Med. 23 (12), 3053 - 3065
Volltext (DOI) - Oberbach, A., von Bergen, M., Blueher, S., Lehmann, S., Till, H. (2012):
Combined serum proteomic and metabonomic profiling after laparoscopic sleeve gastrectomy in children and adolescents
J. Laparoendosc. Adv. Surg. Tech. 22 (2), 184 - 188
Volltext (DOI) - Oberender, J., Kung, J.W., Seifert, J., von Bergen, M., Boll, M. (2012):
Identification and characterization of a succinyl-coenzyme A (CoA):benzoate CoA transferase in Geobacter metallireducens
J. Bacteriol. 194 (10), 2501 - 2508
Volltext (DOI) - Otto, C., Reiche, K., Hackermüller, J. (2012):
Detection of differentially expressed segments in tiling array data
Bioinformatics 28 (11), 1471 - 1479
Volltext (DOI) - Pohler, P., Lehmann, J., Veneruso, V., Tomm, J., von Bergen, M., Lambrecht, B., Kohn, B., Weingart, C., Müller, T.H., Seltsam, A. (2012):
Evaluation of the tolerability and immunogenicity of ultraviolet C-irradiated autologous platelets in a dog model
Transfusion 52 (11), 2414 - 2426
Volltext (DOI) - Reinhold, A., Westermann, M., Seifert, J., von Bergen, M., Schubert, T., Diekert, G. (2012):
Impact of vitamin B12 on the formation of the tetrachloroethene reductive dehalogenase in Desulfitobacterium hafniense strain Y51
Appl. Environ. Microb. 78 (22), 8025 - 8032
Volltext (DOI) - Salbach, J., Kliemt, S., Rauner, M., Rachner, T.D., Goettsch, C., Kalkhof, S., von Bergen, M., Möller, S., Schnabelrauch, M., Hintze, V., Scharnweber, D., Hofbauer, L.C. (2012):
The effect of the degree of sulfation of glycosaminoglycans on osteoclast function and signaling pathways
Biomaterials 33 (33), 8418 - 8429
Volltext (DOI) - Schmidt, A.-C., Lauckner, S., Lindner, K. (2012):
CZE of sulfur-containing amino acids and peptides and its application to the quantitative study of heavy metal-caused thiol oxidations
Chromatographia 75 (11-12), 661 - 670
Volltext (DOI) - Seifert, J., Taubert, M., Jehmlich, N., Schmidt, F., Völker, U., Vogt, C., Richnow, H.H., von Bergen, M. (2012):
Protein-based stable isotope probing (protein-SIP) in functional metaproteomics
Mass Spectrom. Rev. 31 (6), 683 - 697
Volltext (DOI) - Sultana, M., Vogler, S., Zargar, K., Schmidt, A.-C., Saltikov, C., Seifert, J., Schlömann, M. (2012):
New clusters of arsenite oxidase and unusual bacterial groups in enrichments from arsenic-contaminated soil
Arch. Microbiol. 194 (7), 623 - 635
Volltext (DOI) - Taubert, M., Vogt, C., Wubet, T., Kleinsteuber, S., Tarkka, M.T., Harms, H., Buscot, F., Richnow, H.-H., von Bergen, M., Seifert, J. (2012):
Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium
ISME J. 6 (12), 2291 - 2301
Volltext (DOI) - von Bergen, M., Reiche, K., Hösler, N., Rockstroh, M., Horn, F., Hackermüller, J., Tomm, J. (2012):
A time resolved analysis of nc/mRNA and protein expression throughout Th cell activation
Immunology 137 (Suppl. S1), 364 - 364
Volltext (DOI) - Wagner, A., Cooper, M., Ferdi, S., Seifert, J., Adrian, L. (2012):
Growth of Dehalococcoides mccartyi strain CBDB1 by reductive dehalogenation of brominated benzenes to benzene
Environ. Sci. Technol. 46 (16), 8960 - 8968
Volltext (DOI) - Weisse, K., Lehmann, I., Heroux, D., Kohajda, T., Herberth, G., Röder, S., von Bergen, M., Borte, M., Denburg, J. (2012):
The LINA cohort: indoor chemical exposure, circulating eosinophil/basophil (Eo/B) progenitors and early life skin manifestations
Clin. Exp. Allergy 42 (9), 1337 - 1346
Volltext (DOI) - Weisse, K., Winkler, S., Stangl, G.I., Hirche, F., Herberth, G., Hinz, D., Bauer, M., Röder, S., Rolle-Kampczyk, U., von Bergen-Tomm, M., Olek, S., Sack, U., Borte, M., Richter, T., Lehmann, I. (2012):
Maternal and newborn vitamin D status and its impact on fetal regulatory T cell development and children's atopy risk in the German LINA cohort study
J. Reprod. Immunol. 94 (1), 53 - 54
Volltext (DOI) - Wirth, H., von Bergen, M., Binder, H. (2012):
Mining SOM expression portraits: feature selection and integrating concepts of molecular function
BioData Min. 5 (October), art. 18
Volltext (DOI) - Wirth, H., von Bergen, M., Murugaiyan, J., Roesler, U., Stokowy, T., Binder, H. (2012):
MALDI-typing of infectious algae of the genus Prototheca using SOM portraits
J. Microbiol. Methods 88 (1), 83 - 89
Volltext (DOI) - Wuttig, D., Zastrow, S., Füssel, S., Toma, M.I., Meinhardt, M., Kalman, K., Junker, K., Sanjmyatav, J., Boll, K., Hackermüller, J., Rolle, A., Grimm, M.O., Wirth, M.P. (2012):
CD31, EDNRB and TSPAN7 are promising prognostic markers in clear-cell renal cell carcinoma revealed by genome-wide expression analyses of primary tumors and metastases
Int. J. Cancer 131 (5), E693 - E704
Volltext (DOI)
2011 (34)
- Bastida, F., Jechalke, S., Bombach, P., Franchini, A.G., Seifert, J., von Bergen, M., Vogt, C., Richnow, H.H. (2011):
Assimilation of benzene carbon through multiple trophic levels traced by different stable isotope probing methodologies
FEMS Microbiol. Ecol. 77 (2), 357 - 369
Volltext (DOI) - Dautel, F., Kalkhof, S., Trump, S., Lehmann, I., Beyer, A., von Bergen, M. (2011):
Large-scale 2-D DIGE studies - guidelines to overcome pitfalls and challenges along the experimental procedure
Journal of Integrated OMICS 1 (1), 170 - 179
Volltext (DOI) - Dautel, F., Kalkhof, S., Trump, S., Michaelson, J., Beyer, A., Lehmann, I., von Bergen, M. (2011):
DIGE-based protein expression analysis of B[a]P-exposed hepatoma cells reveals a complex stress response including alterations in oxidative stress, cell cycle control, and cytoskeleton motility at toxic and subacute concentrations
J. Proteome Res. 10 (2), 379 - 393
Volltext (DOI) - Dietrich, A., Blüher, M., Jonas, S., Shang, E., Till, H., von Bergen, M., Oberbach, A. (2011):
Metabolic effects of sleeve gastrectomy on different serum proteins
Obes. Surg. 21 (8), 1064 - 1064
Volltext (DOI) - Diez, U., Müller, A. (2011):
Einfluss der Schimmelpilzbelastung in Wohnungen auf die Gesundheit
Pädiatrische Allergologie in Klinik und Praxis 14 (2), 40 - 42
Volltext (URL) - Georgieva, D., Seifert, J., Öhler, M., von Bergen, M., Spencer, P., Arni, R.K., Genov, N., Betzel, C. (2011):
Pseudechis australis venomics: adaptation for a defense against microbial pathogens and recruitment of body transferrin
J. Proteome Res. 10 (5), 2440 - 2464
Volltext (DOI) - Goodman, V., Müller, A., Gröger-Arndt, H., Schlosser, D., Jehmlich, N., Treudler, R., Lehmann, I., Simon, J.-C., von Bergen, M. (2011):
Identification of spore specific allergen candidates from Penicillium chrysogenum
Journal of Integrated OMICS 1 (2), 272 - 279
Volltext (DOI) - Hedrich, S., Lünsdorf, H., Kleeberg, G., Heide, G., Seifert, J., Schlömann, M. (2011):
Schwertmannite formation adjacent to bacterial cells in a mine water treatment plant and in pure cultures of ‘Ferrovum myxofaciens’
Environ. Sci. Technol. 45 (18), 7685 - 7692
Volltext (DOI) - Hempel, K., Herbst, F.-A., Moche, M., Hecker, M., Becher, D. (2011):
Quantitative proteomic view on secreted, cell surface-associated, and cytoplasmic proteins of the methicillin-resistant human pathogen Staphylococcus aureus under iron-limited conditions
J. Proteome Res. 10 (4), 1657 - 1666
Volltext (DOI) - Herbarth, O., Müller, A. (2011):
Allergien durch Schimmelpilze: Ergebnisse aus epidemiologischen, umweltmedizinischen und interventionellen Studie. Allergic disorders caused by mould: results of epidemiological, environmental health and intervention studies
Allergologie 34 (1), 3 - 9 - Hösler, N., Hackermüller, J., Reiche, K., Horn, F. (2011):
Identification of ncRNAs regulating differencoation and function of CD4+ T cells. PS2-061
Cytokine 56 (1), 81 - 81
Volltext (DOI) - Jehmlich, N., Seifert, J., Taubert, M., Schmidt, F., Vogt, C., Richnow, H.H., von Bergen, M. (2011):
Protein stable isotope probing
In: Murrell, J.C., Whiteley, A.S. (eds.)
Stable isotope probing and related technologies
ASM Press, Washington, DC, p. 71 - 93 - Kuntze, K., Kiefer, P., Baumann, S., Seifert, J., von Bergen, M., Vorholt, J.A., Boll, M. (2011):
Enzymes involved in the anaerobic degradation of meta-substituted halobenzoates
Mol. Microbiol. 82 (3), 758 - 769
Volltext (DOI) - Marco-Urrea, E., Paul, S., Khodaverdi, V., Seifert, J., von Bergen, M., Kretzschmar, U., Adrian, L. (2011):
Identification and characterization of a Re-Citrate synthase in Dehalococcoides strain CBDB1
J. Bacteriol. 193 (19), 5171 - 5178
Volltext (DOI) - Marino, D.J., Castro, E.A., Massolo, L., Mueller, A., Herbarth, O., Ronco, A.E. (2011):
Characterization of polycyclic aromatic hydrocarbon profiles by multivariate statistical analysis
International Journal of Chemoinformatics and Chemical Engineering 1 (2), 1 - 14
Volltext (DOI) - Michaelson, J., Trump, S., Rudzok, S., Gräbsch, C., Madureira, D.J., Dautel, F., Mai, J., Attinger, S., Schirmer, K., von Bergen, M., Lehmann, I., Beyer, A. (2011):
Transcriptional signatures of regulatory and toxic responses to benzo-[a]-pyrene exposure
BMC Genomics 12 , art. 502
Volltext (DOI) - Mögel, I., Baumann, S., Böhme, A., Kohajda, T., von Bergen, M., Simon, J.-C., Lehmann, I. (2011):
The aromatic volatile organic compounds toluene, benzene and styrene induce COX-2 and prostaglandins in human lung epithelial cells via oxidative stress and p38 MAPK activation
Toxicology 289 (1), 28 - 37
Volltext (DOI) - Mörbt, N., Feltens, R., Tomm, J., Kalkhof, S., Mögel, I., Vogt, C., Lehmann, I., von Bergen, M. (2011):
Chlorinated benzenes cause concomitantly oxidative stress and induction of apoptotic markers in lung epithelial cells (A549) at non-acute toxic concentrations
J. Proteome Res. 10 (2), 363 - 378
Volltext (DOI) - Oberbach, A., Blüher, M., Wirth, H., Till, H., Kovacs, P., Kullnick, Y., Schlichting, N., Tomm, J.M., Rolle-Kampczyk, U., Murugaiyan, J., Binder, H., Dietrich, A., von Bergen, M. (2011):
Combined proteomic and metabolomic profiling of serum reveals association of the complement system with obesity and identifies novel markers of body fat mass changes
J. Proteome Res. 10 (10), 4769 - 4788
Volltext (DOI) - Oberbach, A., Till, H., Dietrich, A., Shang, E., von Bergen, M. (2011):
Integrated proteomic and lipidomic analysis of secretory phospholipase A2 and lysophosphatidylcholines metabolism following sleeve gastrectomy
Obes. Surg. 21 (8), 1064 - 1065
Volltext (DOI) - Otto, W., Stadler, P.F., Prohaska, S.J. (2011):
Phylogenetic footprinting and consistent sets of local aligments
In: Giancarlo, R., Manzini, G. (eds.)
Combinatorial Pattern Matching : 22nd Annual Symposium, CPM 2011, Palermo, Italy, June 27-29, 2011. Proceedings
Lect. Notes Comput. Sci. 6661
Springer, Berlin, Heidelberg, New York, p. 118 - 131
Volltext (DOI) - Reiche, K., Schutt, K., Boll, K., Horn, F., Hackermüller, J. (2011):
Bioinformatics for RNomics
In: Mayer, B. (ed.)
Bioinformatics for Omics data
Methods in Molecular Biology 719
Springer Nature, p. 299 - 330
Volltext (DOI) - Rockstroh, M., Müller, S.A., Jende, C., Kerzhner, A., von Bergen, M., Tomm, J.M. (2011):
Cell fractionation - an important tool for compartment proteomics
Journal of Integrated OMICS 1 (1), 135 - 143
Volltext (DOI) - Rose, D., Hiller, M., Schutt, K., Hackermüller, J., Backofen, R., Stadler, P.F. (2011):
Computational discovery of human coding and non-coding transcripts with conserved splice sites
Bioinformatics 27 (14), 1894 - 1900
Volltext (DOI) - Rudzok, S., Krejči, S., Graebsch, C., Herbarth, O., Mueller, A., Bauer, M. (2011):
Toxicity profiles of four metals and 17 xenobiotics in the human hepatoma cell line HepG2 and the protozoa Tetrahymena pyriformis - A comparison
Environ.Toxicol. 26 (2), 171 - 186
Volltext (DOI) - Schramedei, K., Mörbt, N., Pfeifer, G., Läuter, J., Rosolowski, M., Tomm, J.M., von Bergen, M., Horn, F., Brocke-Heidrich, K. (2011):
MicroRNA-21 targets tumor suppressor genes ANP32A and SMARCA4
Oncogene 30 (6), 2975 - 2985
Volltext (DOI) - Schramm, F., Müller, A., Hammer, H., Paschke, A., Schüürmann, G. (2011):
Epoxide and thiirane toxicity in vitro with the ciliates Tetrahymena pyriformis: structural allerts indicating excess toxicity
Environ. Sci. Technol. 45 (13), 5812 - 5819
Volltext (DOI) - Sultana, M., Härtig, C., Planer-Friedrich, B., Seifert, J., Schlömann, M. (2011):
Bacterial communities in Bangladesh aquifers differing in aqueous arsenic concentration
Geomicrobiol. J. 28 (3), 198 - 211
Volltext (DOI) - Taubert, M., Baumann, S., von Bergen, M., Seifert, J. (2011):
Exploring the limits of robust detection of incorporation of 13C by mass spectrometry in protein-based stable isotope probing (protein-SIP)
Anal. Bioanal. Chem. 401 (6), 1975 - 1982
Volltext (DOI) - Taubert, M., Jehmlich, N., Vogt, C., Richnow, H.H., Schmidt, F., von Bergen, M., Seifert, J. (2011):
Time resolved protein-based stable isotope probing (Protein-SIP) analysis allows quantification of induced proteins in substrate shift experiments
Proteomics 11 (11), 2265 - 2274
Volltext (DOI) - Tischer, C.G., Hohmann, C., Thiering, E., Herbarth, O., Müller, A., Henderson, J., Granell, R., Fantini, M.P., Luciano, L., Bergström, A., Kull, I., Link, E., von Berg, A., Kuehni, C.E., Strippoli, M.P.F., Gehring, U., Wijga, A., Eller, E., Bindslev-Jensen, C., Keil, T., Heinrich, J. (2011):
Meta-analysis of mould and dampness exposure on asthma and allergy in eight European birth cohorts: an ENRIECO initiative
Allergy 66 (12), 1570 - 1579
Volltext (DOI) - Tramontano, A., Donath, A., Bernhart, S.H., Reiche, K., Böhmdorfer, C., Stadler, P.F., Bachmair, A. (2011):
Deletion analysis of the 3' long terminal repeat sequence of plant retrotransposon Tto1 identifies 125 base pairs redundancy as sufficient for first strand transfer
Virology 412 (1), 75 - 82
Volltext (DOI) - Washietl, S., Findeiss, S., Müller, S.A., Kalkhof, S., von Bergen, M., Hofacker, I.L., Stadler, P.F., Goldmann, N. (2011):
RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data
RNA 17 (4), 578 - 594
Volltext (DOI) - Wirth, H., Löffler, M., von Bergen, M., Binder, H. (2011):
Expression cartography of human tissues using self organizing maps
BMC Bioinformatics 12 , art. 306
Volltext (DOI)
2010 (28)
- Bastida, F., Rosell, M., Franchini, A.G., Seifert, J., Finsterbusch, S., Jehmlich, N., Jechalke, S., von Bergen, M., Richnow, H.H. (2010):
Elucidating MTBE degradation in a mixed consortium using a multidisciplinary approach
FEMS Microbiol. Ecol. 73 (2), 370 - 384
Volltext (DOI) - Binder, H., Wirth, H., Galle, J. (2010):
Gene expression density profiles characterize modes of genomic regulation: theory and experiment
J. Biotechnol. 149 (3), 98 - 114
Volltext (DOI) - Feltens, R., Görner, R., Kalkhof, S., Gröger-Arndt, H., von Bergen, M. (2010):
Discrimination of different species from the genus Drosophila by intact protein profiling using matrix-assisted laser desorption ionization mass spectrometry
BMC Evol. Biol. 10 , art. 95
Volltext (DOI) - Fetzer, I., Jehmlich, N., Vogt, C., Richnow, H.H., Seifert, J., Harms, H., von Bergen, M., Schmidt, F. (2010):
Calculation of partial isotope incorporation into peptides measured by mass spectrometry
BMC Res. Notes 3 , art. 178
Volltext (DOI) - Georgieva, D., Öhler, M., Seifert, J., von Bergen, M., Arni, R.K., Genov, N., Betzel, C. (2010):
Snake venomic of Crotalus durissus terrificus-correlation with pharmacological activities
J. Proteome Res. 9 (5), 2302 - 2316
Volltext (DOI) - Georgieva, D., Redecke, L., von Bergen, M., Genov, N., Betzel, C. (2010):
Interactions of ginkgolides A and B with a recombinant human prion protein
Protein Pept. Lett. 17 (3), 399 - 404
Volltext (DOI) - Gündel, U., Kalkhof, S., von Bergen, M., Altenburger, R., Küster, E. (2010):
Concentration-response concept in ecotoxicoproteomics: an optimised design for the detection of robust chemical stress associated protein markers: Effects of different concentrations of phenanthren to the proteome of Danio rerio embryos
Comp. Biochem. Physiol. A-Mol. Integr. Physiol. 157 (Suppl. 1), S42 - S43
Volltext (DOI) - Heinrich, U.-R., Selivanova, O., Schmidtmann, I., Feltens, R., Brieger, J., Mann, W.J. (2010):
Noise exposure alters cyclooxygenase 1 (COX-1) and 5-lipoxygenase (5-LO) expression in the guinea pig cochlea
Acta Oto-Laryngol. 130 (3), 358 - 365
Volltext (DOI) - Jehmlich, N., Fetzer, I., Seifert, J., Mattow, J., Vogt, C., Harms, H., Thiede, B., Richnow, H.H., von Bergen, M., Schmidt, F. (2010):
Decimal place slope: a fast and precise method for quantifying 13C incorporation levels for detecting the metabolic activity of microbial species
Mol. Cell. Proteomics 9 (6), 1221 - 1227
Volltext (DOI) - Jehmlich, N., Hübschmann, T., Gesell Salazar, M., Völker, U., Benndorf, D., Müller, S., von Bergen, M., Schmidt, F. (2010):
Advanced tool for characterization of microbial cultures by combining cytomics and proteomics
Appl. Microbiol. Biotechnol. 88 (2), 575 - 584
Volltext (DOI) - Jehmlich, N., Kleinsteuber, S., Vogt, C., Benndorf, D., Harms, H., Schmidt, F., von Bergen, M., Seifert, J. (2010):
Phylogenetic and proteomic analysis of an anaerobic toluene-degrading community
J. Appl. Microbiol. 109 (6), 1937 - 1945
Volltext (DOI) - Jehmlich, N., Schmidt, F., Taubert, M., Seifert, J., Bastida, F., von Bergen, M., Richnow, H.-H., Vogt, C. (2010):
Protein-based stable isotope probing
Nat. Protoc. 5 (12), 1957 - 1966
Volltext (DOI) - Kalkhof, S., Haehn, S., Paulsson, M., Smyth, N., Meiler, J., Sinz, A. (2010):
Computational modeling of laminin N-terminal domains using sparse distance constraints from disulfide bonds and chemical cross-linking
Proteins 78 (16), 3409 - 3427
Volltext (DOI) - Kalkhof, S., Witte, K., Ihling, C.H., Müller, M.Q., Keller, M.V., Haehn, S., Smyth, N., Paulsson, M., Sinz, A. (2010):
A novel disulfide pattern in laminin-type epidermal growth factor-like (LE) modules of laminin β1 and γ1 chains
Biochemistry 49 (38), 8359 - 8366
Volltext (DOI) - Kung, J.W., Baumann, S., von Bergen, M., Müller, M., Hagedoorn, P.-L., Hagen, W.R., Boll, M. (2010):
Reversible biological Birch reduction at an extremely low redox potential
J. Am. Chem. Soc. 132 (28), 9850 - 9856
Volltext (DOI) - Leibeling, S., Schmidt, F., Jehmlich, N., von Bergen, M., Müller, R.H., Harms, H. (2010):
Declining capacity of starving Delftia acidovorans MC1 to degrade phenoxypropionate herbicides correlates with oxidative modification of the initial enzyme
Environ. Sci. Technol. 44 (10), 3793 - 3799
Volltext (DOI) - Leibeling, S., Taubert, M., Seifert, J., von Bergen, M., Harms, H., Müller, R.H. (2010):
Adaptation of the herbicide-degrading strain Delftia acidovorans MC1 through carbonylation of RdpA as key enzyme
J. Biotechnol. 150 (Suppl. 1), S262 - S263
Volltext (DOI) - Massolo, L., Rehwagen, M., Porta, A., Ronco, A., Herbarth, O., Mueller, A. (2010):
Indoor-outdoor distribution and risk assessment of volatile organic compounds in the atmosphere of industrial and urban areas
Environ.Toxicol. 25 (4), 339 - 349
Volltext (DOI) - Müller, S.A., Kohajda, T., Findeiß, S., Stadler, P.F., Washietl, S., Kellis, M., von Bergen, M., Kalkhof, S. (2010):
Optimization of parameters for coverage of low molecular weight proteins
Anal. Bioanal. Chem. 398 (7-8), 2867 - 2881
Volltext (DOI) - Öhler, M., Georgieva, D., Seifert, J., von Bergen, M., Arni, R.K., Genov, N., Betzel, C. (2010):
The venomics of Bothrops alternatus is a pool of acidic proteins with predominant hemorrhagic and coagulopathic activities
J. Proteome Res. 9 (5), 2422 - 2437
Volltext (DOI) - Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., Becher, D. (2010):
Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis
Nat. Commun. 1 , art. 137
Volltext (DOI) - Picotti, P., Rinner, O., Stallmach, R., Dautel, F., Farrah, T., Domon, B., Wenschuh, H., Aebersold, R. (2010):
High-throughput generation of selected reaction-monitoring assays for proteins and proteomes
Nat. Methods 7 , 43 - 46
Volltext (DOI) - Saalbach, A., Klein, C., Schirmer, C., Briest, W., Anderegg, U., Simon, J.-C. (2010):
Dermal fibroblasts promote the migration of dendritic cells
J. Invest. Dermatol. 130 (2), 444 - 454
Volltext (DOI) - Schirmer, C., Klein, C., von Bergen, M., Simon, J.-C., Saalbach, A. (2010):
Human fibroblasts support the expansion of IL-17-producing T cells via up-regulation of IL-23 production by dendritic cells
Blood 116 (10), 1715 - 1725
Volltext (DOI) - Schirmer, C., Klein, C., von Bergen, M., Simon, J.C., Saalbach, A. (2010):
Differentiation of IL-17 secreting T cells is supported by human dermal fibroblasts via up-regulation of IL-23 production by dendritic cells
Exp. Dermatol. 19 (2), 181 / P085
Volltext (DOI) - Selesi, D., Jehmlich, N., von Bergen, M., Schmidt, F., Rattei, T., Tischler, P., Lueders, T., Meckenstock, R.U. (2010):
Combined genomic and proteomic approaches identify gene clusters involved in anaerobic 2-methylnaphthalene degradation in the dulfate-reducing enrichment culture N47
J. Bacteriol. 192 (1), 295 - 306
Volltext (DOI) - Sträuber, H., Hübschmann, T., Jehmlich, N., Schmidt, F., von Bergen, M., Harms, H., Müller, S. (2010):
NBDT (3-(N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino)-3-toluene) - A novel fluorescent dye for studying mechanisms of toluene uptake into vital bacteria
Cytom. Part A 77A (2), 113 - 120
Volltext (DOI) - Tischler, D., Kermer, R., Gröning, J.A., Kaschabek, S.R., van Berkel, W.J.H., Schlömann, M. (2010):
StyA1 and StyA2B from Rhodococcus opacus 1CP: a multifunctional styrene monooxygenase system
J. Bacteriol. 192 (19), 5220 - 5227
Volltext (DOI)
2009 (25)
- Benndorf, D., Vogt, C., Jehmlich, N., Schmidt, Y., Thomas, H., Woffendin, G., Shevchenko, A., Richnow, H.-H., von Bergen, M. (2009):
Improving protein extraction and separation methods for investigating the metaproteome of anaerobic benzene communities within sediments
Biodegradation 20 (6), 737 - 750
Volltext (DOI) - Bruegel, M., Planert, M., Baumann, S., Focke, A., Bergh, F.T., Leichtle, A., Ceglarek, U., Thiery, J., Fiedler, G.M. (2009):
Standardized peptidome profiling of human cerebrospinal fluid by magnetic bead separation and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
J. Proteomics 72 (4), 608 - 615
Volltext (DOI) - Cianni, N., Müller, A., Lespade, P., Aguilar, M., Matamoros, N., Colman, E., Martin, M., Chiapperini, V., Bussi, L., Massolo, L., Wichmann, F., Porta, A. (2009):
Calidad del aire y salud infantil en áreas urbanas e industriales de La Plata y Ensenada, Argentina
In: Puliafito, S.E., Quaranta, N. (eds.)
Contaminación atmosférica en Argentina: contribuciones de la II Reunión Anual PROIMCA
Universidad Tecnológica Nacional, Mendoza, p. 37 - 44 - Dimova, K., Kalkhof, S., Pottratz, I., Ihling, C., Rodriguez-Castaneda, F., Liepold, T., Griesinger, C., Brose, N., Sinz, A., Jahn, O. (2009):
Structural insights into the calmodulin-Munc13 interaction obtained by cross-linking and mass spectrometry
Biochemistry 48 (2), 5908 - 5921
Volltext (DOI) - Ehinger, S., Seifert, J., Kassahun, A., Schmalz, L., Hoth, N., Schlömann, M. (2009):
Predominance of Methanolobus spp. and Methanoculleus spp. in the archaeal communities of saline gas field formation fluids
Geomicrobiol. J. 26 (5), 326 - 338
Volltext (DOI) - Fiedler, G.M., Leichtle, A.B., Kase, J., Baumann, S., Ceglarek, U., Felix, K., Conrad, T., Witzigmann, H., Weimann, A., Schütte, C., Hauss, J., Büchler, M., Thiery, J. (2009):
Serum peptidome profiling revealed platelet factor 4 as a potential discriminating peptide associated with pancreatic cancer
Clin. Cancer Res. 15 (11), 3812 - 3819
Volltext (DOI) - Gniese, C., Kruger, M., Frerichs, J., Kassahun, A., Hoth, N., Seifert, J. (2009):
Determination of active microorganisms in the gas reservoir Altmark and their role in CO2 turnover
Geochim. Cosmochim. Acta 73 (13 Suppl.), A442
Volltext (DOI) - Heine, F., Stahl, F., Sträuber, H., Wiacek, C., Benndorf, D., Repenning, C., Schmidt, F., Scheper, T., von Bergen, M., Harms, H., Müller, S. (2009):
Prediction of flocculation ability of brewing yeast inoculates by flow cytometry, proteome analysis, and mRNA profiling
Cytom. Part A 75A (2), 140 - 147
Volltext (DOI) - Heinzel, E., Hedrich, S., Janneck, E., Glombitza, F., Seifert, J., Schlömann, M. (2009):
Bacterial diversity in a mine water treatment plant
Appl. Environ. Microb. 75 (3), 858 - 861
Volltext (DOI) - Heinzel, E., Janneck, E., Glombitza, F., Schlömann, M., Seifert, J. (2009):
Population dynamics of iron-oxidizing communities in pilot plants for the treatment of acid mine waters
Environ. Sci. Technol. 43 (16), 6138 - 6144
Volltext (DOI) - Jehmlich, N., Schmidt, F., Taubert, M., Seifert, J., von Bergen, M., Richnow, H.-H., Vogt, C. (2009):
Comparison of methods for simultaneous identification of bacterial species and determination of metabolic activity by protein-based stable isotope probing (Protein-SIP) experiments
Rapid Commun. Mass Spectrom. 23 (12), 1871 - 1878
Volltext (DOI) - Junghanns, C., Pecyna, M.J., Böhm, D., Jehmlich, N., Martin, C., von Bergen, M., Schauer, F., Hofrichter, M., Schlosser, D. (2009):
Biochemical and molecular genetic characterisation of a novel laccase produced by the aquatic ascomycete Phoma sp. UHH 5-1-03
Appl. Microbiol. Biotechnol. 84 (6), 1095 - 1105
Volltext (DOI) - Manolaridis, I., Mumtsidu, E., Konarev, P., Makhov, A.M., Fullerton, S.W., Sinz, A., Kalkhof, S., McGeehan, J.E., Cary, P.D., Griffith, J.D., Svergun, D., Kneale, G.G., Tucker, P.A. (2009):
Structural and biophysical characterization of the proteins interacting with the herpes simplex virus 1 origin of replication
J. Biol. Chem. 284 (24), 16343 - 16353
Volltext (DOI) - Massolo, L., Müller, A., Rehwagen, M., Porta, A., Herbarth, O., Ronco, A. (2009):
Estimación del riesgo asociado a PAHs en ambientes urbanos e industriales
In: Puliafito, S.E., Quaranta, N. (eds.)
Contaminación atmosférica en Argentina: contribuciones de la II Reunión Anual PROIMCA
Universidad Tecnológica Nacional, Mendoza, p. 45 - 53 - Matysik, S., Herbarth, O., Mueller, A. (2009):
Determination of microbial volatile organic compounds (MVOCs) by passive sampling onto charcoal sorbents
Chemosphere 76 (1), 114 - 119
Volltext (DOI) - Mörbt, N., Mögel, I., Kalkhof, S., Feltens, R., Röder-Stolinski, C., Zheng, J., Vogt, C., Lehmann, I., von Bergen, M. (2009):
Proteome changes in human bronchoalveolar cells following styrene exposure indicate involvement of oxidative stress in the molecular-response mechanism
Proteomics 9 (21), 4909 - 4933
Volltext (DOI) - Rehders, D., Classen, B., Redecke, L., Buschke, A., Reibe, C., Jehmlich, N., von Bergen, M., Betzel, A., Meyer, B. (2009):
Peptide NMHRYPNQ of the Cellular Prion Protein (PrPC) Inhibits Aggregation and Is a Potential Key for Understanding Prion-Prion Interactions
J. Mol. Biol. 392 (1), 198 - 207
Volltext (DOI) - Risch, M., Georgieva, D., von Bergen, M., Jehmlich, N., Genov, N., Arni, R.K., Betzel, C. (2009):
Snake venomics of the Siamese Russell's viper (Daboia russelli siamensis) - Relation to pharmacological activities
J. Proteomics 72 (2), 256 - 269
Volltext (DOI) - Saalbach, A., Klein, C., Schirmer, C., Anderegg, U., Simon, J.C. (2009):
Role of dermal fibroblasts in the regulation of dendritic cellmigration
Exp. Dermatol. 18 (3), 291 - 291
Volltext (DOI) - Schleinitz, K.M., Schmeling, S., Jehmlich, N., von Bergen, M., Harms, H., Kleinsteuber, S., Vogt, C., Fuchs, G. (2009):
Phenol degradation in the strictly anaerobic iron-reducing bacterium Geobacter metallireducens GS-15
Appl. Environ. Microb. 75 (12), 3912 - 3919
Volltext (DOI) - Seifert, J., Jehmlich, N., Schmidt, F., Taubert, M., von Bergen, M., Richnow, H.-H., Vogt, C. (2009):
Protein-stable isotope probing (Protein-SIP) for simultaneous identification of bacterial species and determination of metabolic activity
Geochim. Cosmochim. Acta 73 (13 Suppl.), A1191
Volltext (DOI) - von Bergen, M., Eidner, A., Schmidt, F., Murugaiyan, J., Wirth, H., Binder, H., Maier, T., Roesler, U. (2009):
Identification of harmless and pathogenic algae of the genus Prototheca by MALDI-MS
Proteom. Clin. Appl. 3 (7), 774 - 787
Volltext (DOI) - Wichmann, F.A., Müller, A., Busi, L.E., Cianni, N., Massolo, L., Schlink, U., Porta, A., Sly, P.D. (2009):
Increased asthma and respiratory symptoms in children exposed to petrochemical pollution
J. Allergy Clin. Immunol. 123 (3), 632 - 638
Volltext (DOI) - Wichmann, G., Franck, U., Herbarth, O., Rehwagen, M., Dietz, A., Massolo, L., Ronco, A., Müller, A. (2009):
Different immunomodulatory effects associated with sub-micrometer particles in ambient air from rural, urban and industrial areas
Toxicology 257 (3), 127 - 136
Volltext (DOI) - Wischgoll, S., Taubert, M., Peters, F., Jehmlich, N., von Bergen, M., Boll, M. (2009):
Decarboxylating and nondecarboxylating glutaryl-coenzyme A dehydrogenases in the aromatic metabolism of obligately anaerobic bacteria
J. Bacteriol. 191 (13), 4401 - 4409
Volltext (DOI)
2008 (19)
- Andronesi, O.C., von Bergen, M., Biernat, J., Seidel, K., Griesinger, C., Mandelkow, E., Baldus, M. (2008):
Characterization of Alzheimer's-like paired helical filaments from the core domain of tau protein using solid-state NMR spectroscopy
J. Am. Chem. Soc. 130 (18), 5922 - 5928
Volltext (DOI) - Balcke, G.U., Wegener, S., Kiesel, B., Benndorf, D., Schlömann, M., Vogt, C. (2008):
Kinetics of chlorobenzene biodegradation under reduced oxygen levels
Biodegradation 19 (4), 507 - 518
Volltext (DOI) - Benndorf, D., Müller, A., Bock, K., Manuwald, O., Herbarth, O., von Bergen, M. (2008):
Identification of spore allergens from the indoor mould Aspergillus versicolor
Allergy 63 (4), 454 - 460
Volltext (DOI) - Bock, K., Benndorf, D., Müller, A., Bauer, M., von Bergen, M. (2008):
Identification of allergens from the indoor mold Aspergillus versicolor
Allergy 63 (Suppl. 88), 530 - 531
Volltext (DOI) - Georgieva, D., Risch, M., Kardas, A., Buck, F., von Bergen, M., Betzel, C. (2008):
Comparative Analysis of the Venom Proteomes of Vipera ammodytes ammodytes and Vipera ammodytes meridionalis
J. Proteome Res. 7 (3), 866 - 886
Volltext (DOI) - Hehemann, J.H., Redecke, L., Murugaiyan, J., von Bergen, M., Betzel, C., Saborowski, R. (2008):
Autoproteolytic stability of a trypsin from the marine crab Cancer pagurus
Biochem. Biophys. Res. Commun. 370 (4), 566 - 571
Volltext (DOI) - Jeganathan, S., von Bergen, M., Mandelkow, E. (2008):
In search for the pathological conformation of tau protein
Eur. J. Cell Biol. 87 (Suppl. 1), 49
Volltext (DOI) - Jeganathan, S., von Bergen, M., Mandelkow, E.-M., Mandelkow, E. (2008):
The natively unfolded character of tau and its aggregation to Alzheimer-like paired helical filaments
Biochemistry 47 (40), 10526 - 10539
Volltext (DOI) - Jehmlich, N., Schmidt, F., Hartwich, M., von Bergen, M., Richnow, H.H., Vogt, C. (2008):
Incorporation of carbon and nitrogen atoms into proteins measured by protein-based stable isotope probing (Protein-SIP)
Rapid Commun. Mass Spectrom. 22 (18), 2889 - 2897
Volltext (DOI) - Jehmlich, N., Schmidt, F., von Bergen, M., Richnow, H.H., Vogt, C. (2008):
Protein-based stable isotope probing (Protein-SIP) reveals active species within anoxic mixed cultures
ISME J. 2 (11), 1122 - 1133
Volltext (DOI) - Johannes, J., Bluschke, A., Jehmlich, N., von Bergen, M., Boll, M. (2008):
Purification and characterization of active-site components of the putative p-cresol methylhydroxylase membrane complex from Geobacter metallireducens
J. Bacteriol. 190 (19), 6493 - 6500
Volltext (DOI) - Kalkhof, S., Haehn, S., Ihling, C., Paulsson, M., Smyth, N., Sinz, A. (2008):
Determination of disulfide bond patterns in laminin β1 chain N-terminal domains by nano-high-performance liquid chromatography/matrix-assisted laser desorption/ionization time-of-flight/time-of-flight mass spectrometry
Rapid Commun. Mass Spectrom. 22 (12), 1933 - 1940
Volltext (DOI) - Kalkhof, S., Sinz, A. (2008):
Chances and pitfalls of chemical cross-linking with amine-reactive N-hydroxysuccinimide esters
Anal. Bioanal. Chem. 392 (1-2), 305 - 312
Volltext (DOI) - Massolo, L., Müller, A., Herbarth, O., Ronco, A.E., Porta, A. (2008):
Contaminación atmosférica y salud infantil en áreas urbanas e industriales de La Plata, Argentina. Air pollution and children's health in urban and industrial areas of La Plata, Argentina
Acta Bioquim. Clin. Latinoam. 42 (4), 567 - 574
Volltext (URL) - Matysik, S., Herbarth, O., Müller, A. (2008):
Determination of volatile metabolites originating from mould growth on wall paper and synthetic media
J. Microbiol. Methods 75 (2), 182 - 187
Volltext (DOI) - Rehders, D., Claasen, B., Redecke, L., Reibe, C., Buschke, A., Jehmlich, N., von Bergen, M., Betzel, C., Meyer, B. (2008):
Aggregation of the human cellular prion protein (PrPC) is quantitatively inhibited by the octapeptide NMHRVPNQ
J. Pept. Sci. 14 (S1), 125 - 126
Volltext (DOI) - Röder-Stolinski, C., Fischäder, G., Oostingh, G.J., Feltens, R., Kohse, F., von Bergen, M., Mörbt, N., Eder, K., Duschl, A., Lehmann, I. (2008):
Styrene induces an inflammatory response in human lung epithelial cells via oxidative stress and NF-κB activation
Toxicol. Appl. Pharmacol. 231 (2), 241 - 247
Volltext (DOI) - Thiele, B., Rieder, O., Jehmlich, N., von Bergen, M., Müller, M., Boll, M. (2008):
Aromatizing cyclohexa-1,5-diene-1-carbonyl-coenzyme A oxidase. Characterization and its role in anaerobic aromatic metabolism
J. Biol. Chem. 283 (30), 20713 - 20721
Volltext (DOI) - Veeranagouda, Y., Benndorf, D., Heipieper, H.J., Karegoudar, T.B. (2008):
Purification and characterization of NAD dependent n-butanol dehydrogenase from solvent tolerant n-butanol degrading Enterobacter sp VKGH12
J. Microbiol. Biotechnol. 18 (4), 663 - 669
2007 (25)
- Anh, D.H., Ullrich, R., Benndorf, D., Svatos, A., Muck, A., Hofrichter, M. (2007):
The coprophilous mushroom Coprinus radians secretes a haloperoxidase that catalyzes aromatic peroxygenation
Appl. Environ. Microb. 73 (17), 5477 - 5485
Volltext (DOI) - Benndorf, D., Balcke, G.U., Harms, H., von Bergen, M. (2007):
Functional metaproteome analysis of protein extracts from contaminated soil and groundwater
ISME J. 1 (3), 224 - 234
Volltext (DOI) - Fischer, D., Mukrasch, M.D., von Bergen, M., Klos-Witkowska, A., Biernat, J., Griesinger, C., Mandelkow, E., Zweckstetter, M. (2007):
Structural and microtubule binding properties of tau mutants of frontotemporal dementias
Biochemistry 46 (10), 2574 - 2582
Volltext (DOI) - Fischer, W., Zadori, Z., Kullnick, Y., Gröger-Arndt, H., Franke, H., Wirkner, K., Illes, P., Mager, P.P. (2007):
Conserved lysin and arginin residues in the extracellular loop of P2X(3) receptors are involved in agonist binding
Eur. J. Pharmacol. 576 (1-3), 7 - 17
Volltext (DOI) - Fitzpatrick, P.F., Bozinovski, D.M., Heroux, A., Shaw, P.G., Valley, M.P., Orville, A.M. (2007):
Mechanistic and structural analyses of the roles of Arg409 and Asp402 in the reaction of the flavoprotein nitroalkane oxidase
Biochemistry 46 (48), 13800 - 13808
Volltext (DOI) - Gündel, U., Benndorf, D., von Bergen, M., Altenburger, R., Küster, E. (2007):
Vitellogenin cleavage products as indicators for toxic stress in zebra fish embryos: a proteomic approach
Proteomics 7 (24), 4541 - 4554
Volltext (DOI) - Heine, F., Wiacek, C., Benndorf, D., Sträuber, H., Stahl, F., von Bergen, M., Harms, H., Müller, S. (2007):
Evidence of flocculation in brewing yeast strains by flow cytometry, proteome and mRNA profiling
Cytom. Part A 71A (7), 513
Volltext (DOI) - Heine, F., Wiacek, C., Benndorf, D., Sträuber, H., Stahl, F., von Bergen, M., Harms, H., Müller, S. (2007):
Evidence of flocculation in brewing yeast strains by flow cytometry, proteome and mRNA profiling
Cytom. Part A 71A (9), 761
Volltext (DOI) - Kellner, H., Jehmlich, N., Benndorf, D., Hoffmann, R., Rühl, M., Hoegger, P.J., Majcherczyk, A., Kües, U., von Bergen, M., Buscot, F. (2007):
Detection, quantification and identification of fungal extracellular laccases using polyclonal antibody and mass spectrometry
Enzyme Microb. Technol. 41 (6-7), 694 - 701
Volltext (DOI) - Krejči, S., Herbarth, O., Rudzok, S., Schmücking, E., Müller, A. (2007):
Chronic effects of metals, organophosphates and polycyclic aromatic hydrocarbons (PAH) on tetrahymena pyriformis
Toxicol. Lett. 172 (Suppl. 1), S84 - S85
Volltext (DOI) - Mandelkow, E., von Bergen, M., Biernat, J., Mandelkow, E.-M. (2007):
Structural principles of tau and the paired helical filaments of Alzheimer's disease
Brain Pathol. 17 (1), 83 - 90
Volltext (DOI) - Martin, C., Pecyna, M., Kellner, H., Jehmlich, N., Junghanns, C., Benndorf, D., von Bergen, M., Schlosser, D. (2007):
Purification and biochemical characterization of a laccase from the aquatic fungus Myrioconium sp. UHH 1-13-18-4 and molecular analysis of the laccase-encoding gene
Appl. Microbiol. Biotechnol. 77 (3), 613 - 624
Volltext (DOI) - Mattow, J., Siejak, F., Hagens, K., Schmidt, F., Koehler, C., Treumann, A., Schaible, U.E., Kaufmann, S.H.E. (2007):
An improved strategy for selective and efficient enrichment of integral plasma membrane proteins of mycobacteria
Proteomics 7 (10), 1687 - 1701
Volltext (DOI) - Milius, D., Gröger-Arndt, H., Stanchev, D., Lange-Dohna, C., Rossner, S., Sperlágh, B., Wirkner, K., Illes, P. (2007):
Oxygen/glucose deprivation increases the integration of recombinant P2X(7) receptors into the plasma membrane of HEK293 cells
Toxicology 238 (1), 60 - 69
Volltext (DOI) - Mukrasch, M.D., Markwick, P., von Bergen, M., Bernado, P., Griesinger, C., Mandelkow, E., Zweckstetter, M., Blackledge, M. (2007):
Highly populated turn conformations in natively unfolded tau protein identified from residual dipolar couplings and molecular simulation
J. Am. Chem. Soc. 129 (16), 5235 - 5243
Volltext (DOI) - Mukrasch, M.D., von Bergen, M., Biernat, J., Fischer, D., Griesinger, C., Mandelkow, E., Zweckstetter, M. (2007):
The "jaws" of the tau-microtubule interaction
J. Biol. Chem. 282 (16), 12230 - 12239
Volltext (DOI) - Redecke, L., von Bergen, M., Clos, J., Konarev, P.V., Svergun, D.I., Fittschen, U.E., Broekaert, J.A., Bruns, O., Georgieva, D., Mandelkow, E., Genov, N., Betzel, C. (2007):
Structural characterization of β-sheeted oligomers formed on the pathway of oxidative prion protein aggregation in vitro
J. Struct. Biol. 157 (2), 308 - 320
Volltext (DOI) - Rohwerder, T., Breuer, U., Benndorf, D., Lechner, U., Müller, R.H. (2007):
The MTBE and ETBE intermediate 2-HIBA is degraded via a cobalamin-dependent mutase pathway
In: Bastiaens, L. (ed.)
MTBE & other fuel oxygenates : proceedings of the 3rd European Conference, Antwerp, June 7-8, 2007
Vito, Mol, p. 11 - 14 - Santos, P.M., Roma, V., Benndorf, D., von Bergen, M., Harms, H., Sá-Correia, I. (2007):
Mechanistic insights into the global response to phenol in the phenol-biodegrading strain Pseudomonas sp. M1 revealed by quantitative proteomics
OMICS 11 (3), 233 - 251
Volltext (DOI) - Schäfer, F., Breuer, U., Benndorf, D., von Bergen, M., Harms, H., Müller, R.H. (2007):
Growth of Aquincola tertiaricarbonis L108 on tert-butyl alcohol leads to the induction of a phthalate dioxygenase-related protein and its associated oxidoreductase subunit
Eng. Life Sci. 7 (5), 512 - 519
Volltext (DOI) - Schmidt, F., Hustoft, H.K., Strozynski, M., Dimmler, C., Rudel, T., Thiede, B. (2007):
Quantitative proteome analysis of cisplatin-induced apoptotic Jurkat T cells by stable isotope labeling with amino acids in cell culture, SDS-PAGE, and LC-MALDI-TOF/TOF MS
Electrophoresis 28 (23), 4359 - 4368
Volltext (DOI) - Schmidt, F., Strozynski, M., Salus, S.S., Nilsen, H., Thiede, B. (2007):
Rapid determination of amino acid incorporation by stable isotope labeling with amino acids in cell culture (SILAC)
Rapid Commun. Mass Spectrom. 21 (23), 3919 - 3926
Volltext (DOI) - Schubert, T., Maskow, T., Benndorf, D., Harms, H., Breuer, U. (2007):
Continuous synthesis and excretion of the compatible solute ectoine by a transgenic, nonhalophilic bacterium
Appl. Environ. Microb. 73 (10), 3343 - 3347
Volltext (DOI) - Schulz, D.M., Kalkhof, S., Schmidt, A., Ihling, C., Stingl, C., Mechtler, K., Zschoernig, O., Sinz, A. (2007):
Annexin A2/P11 interaction: New insights into annexin A2 tetramer structure by chemical crosslinking, high-resolution mass spectrometry, and computational modeling
Proteins 69 (2), 254 - 269
Volltext (DOI) - Tomm, J.M., Filippowa, K., Vestweber, D. (2007):
Multiple domain interactions between VE-cadherin and VE-PTP
Eur. J. Cell Biol. 86 , 49
Volltext (DOI)
2006 (14)
- Benndorf, D., Thiersch, M., Loffhagen, N., Kunath, C., Harms, H. (2006):
Pseudomonas putida KT2440 responds specifically to chlorophenoxy herbicides and their initial metabolites
Proteomics 6 (11), 3319 - 3329
Volltext (DOI) - Georgieva, D., Schwark, D., von Bergen, M., Redecke, L., Genov, N., Betzel, C. (2006):
Interactions of recombinant prions with compounds of therapeutical significance
Biochem. Biophys. Res. Commun. 344 (2), 463 - 470
Volltext (DOI) - Ihling, C., Schmidt, A., Kalkhof, S., Schulz, D.M., Stingl, C., Mechtler, K., Haack, M., Beck-Sickinger, A.G., Cooper, D.M.F., Sinz, A. (2006):
Isotope-labeled cross-linkers and Fourier transform ion cyclotron resonance mass spectrometry for structural analysis of a protein/peptide complex
J. Am. Soc. Mass Spectrom. 17 (8), 1100 - 1113
Volltext (DOI) - Jeganathan, S., von Bergen, M., Brutlach, H., Steinhoff, H.J., Mandelkow, E. (2006):
Global hairpin folding of tau in solution
Biochemistry 45 (7), 2283 - 2293
Volltext (DOI) - Khlistunova, I., Biernat, J., Wang, Y.P., Pickhardt, M., von Bergen, M., Gazova, Z., Mandelkow, E., Mandelkow, E.-M. (2006):
Inducible expression of tau repeat domain in cell models of tauopathy - Aggregation is toxic to cells but can be reversed by inhibitor drugs
J. Biol. Chem. 281 (2), 1205 - 1214
Volltext (DOI) - Mandelkow, E., Pickhardt, M., Gazova, Z., von Bergen, M., Biernat, J., Khlistunova, I., Wang, Y.P., Hascher, A., Mandelkow, E.-M. (2006):
Inhibition of tau aggregation and disaggregation of PHFs by low MW compounds in vitro and in cells
Neurobiol. Aging 27 (Suppl. 1), S13
Volltext (DOI) - Mattow, J., Siejak, F., Hagens, K., Becher, D., Albrecht, D., Krah, A., Schmidt, F., Jungblut, P.R., Kaufmann, S.H.E., Schaible, U.E. (2006):
Proteins unique to intraphagosomally grown Mycobacterium tuberculosis
Proteomics 6 (8), 2485 - 2494
Volltext (DOI) - Rohwerder, T., Breuer, U., Benndorf, D., Lechner, U., Müller, R.H. (2006):
The alkyl tert-butyl ether intermediate 2-hydroxyisobutyrate is degraded via a novel cobalamin-dependent mutase pathway
Appl. Environ. Microb. 72 (6), 4128 - 4135
Volltext (DOI) - Schmidt, F., Dahlmann, B., Janek, K., Kloss, A., Wacker, M., Ackermann, R., Thiede, B., Jungblut, P.R. (2006):
Comprehensive quantitative proteome analysis of 20S proteasome subtypes from rat liver by isotope coded affinity tag and 2-D gel-based approaches
Proteomics 6 (16), 4622 - 4632
Volltext (DOI) - Schmidt, F., Krah, A., Schmid, M., Jungblut, P.R., Thiede, B. (2006):
Distinctive mass losses of tryptic peptides generated by matrix-assisted laser desorption/ionization time-of-flight/time-of-flight
Rapid Commun. Mass Spectrom. 20 (5), 933 - 936
Volltext (DOI) - von Bergen, M., Barghorn, S., Jeganathan, S., Mandelkow, E.-M., Mandelkow, E. (2006):
Spectroscopic approaches to the conformation of tau protein in solution and in paired helical filaments
Neurodegener. Dis. 3 (4-5), 197 - 206
Volltext (DOI) - von Bergen, M., Barghorn, S., Müller, S.A., Pickhardt, M., Biernat, J., Mandelkow, E.-M., Davies, P., Aebi, U., Mandelkow, E. (2006):
The core of tau-paired helical filaments studied by scanning transmission electron microscopy and limited proteolysis
Biochemistry 45 (20), 6446 - 6457
Volltext (DOI) - Westendorf, A., Benndorf, D., Pribyl, T., Harms, H., Müller, R.H. (2006):
Kinetic traits and enzyme form patterns of (R)-2-(2,4-Dichlorophenoxy)propionate/a-ketoglutarate dioxygenase (RdpA) after expression in different bacterial strains
Eng. Life Sci. 6 (6), 552 - 559
Volltext (DOI) - Wiacek, C., Müller, S., Benndorf, D. (2006):
A cytomic approach reveals population heterogeneity of Cupriavidus necator in response to harmful phenol concentrations
Proteomics 6 (22), 5983 - 5994
Volltext (DOI)
2005 (13)
- Ferraroni, M., Seifert, J., Travkin, V.M., Thiel, M., Kaschabek, S., Scozzafava, A., Golovleva, L., Schlömann, M., Briganti, F. (2005):
Crystal structure of the hydroxyquinol 1,2-dioxygenase from Nocardioides simplex 3E, a key enzyme involved in polychlorinated aromatics biodegradation
J. Biol. Chem. 280 (22), 21144 - 21154
Volltext (DOI) - Fischer, W., Franke, H., Gröger-Arndt, H., Illes, P. (2005):
Evidence for the existence of P2Y1,2,4 receptor subtypes in HEK-293 cells: reactivation of P2Y1 receptors after repetitive agonist application
Naunyn-Schmiedebergs Arch. Pharmacol. 371 (6), 466 - 472
Volltext (DOI) - Guenther, A., Franke, H., Laemmer, A., Wirkner, K., Groeger-Arndt, H., Kruegel, U., Sperlágh, B., Wagner, A., Illes, P., Schneider, D. (2005):
Role of P2X7 receptors in cerebral ischemia models - in vitro and in vivo
J. Neurol. Sci. 238 (Suppl. 1), S398
Volltext (DOI) - Kalkhof, S., Ihling, C., Mechtler, K., Sinz, A. (2005):
Chemical cross-linking and high-performance Fourier transform ion cyclotron resonance mass spectrometry for protein interaction analysis: Application to a calmodulin/target peptide complex
Anal. Chem. 77 (2), 495 - 503
Volltext (DOI) - Lorbiecke, R., Steffens, M., Tomm, J.M., Scholten, S., von Wiegen, P., Kranz, E., Wienand, U., Sauter, M. (2005):
Phytosulphokine gene regulation during maize (Zea mays L.) reproduction
J. Exp. Bot. 56 (417), 1805 - 1819
Volltext (DOI) - Mandelkow, E., von Bergen, M., Pickhardt, M., Gazova, Z., Khlistunova, I., Wang, Y.P., Biernat, J., Mandelkow, E.-M. (2005):
Tau aggregation and Tau aggregation inhibitors
J. Neurochem. 94 (Suppl. 2), 213 - 214
Volltext (DOI) - Mukrasch, M.D., Biernat, J., von Bergen, M., Griesinger, C., Mandelkow, E., Zweckstetter, M. (2005):
Sites of tau important for aggregation populate β-structure and bind to microtubules and polyanions
J. Biol. Chem. 280 (26), 24978 - 24986
Volltext (DOI) - Pickhardt, M., Gazova, Z., von Bergen, M., Khlistunova, I., Wang, Y.P., Hascher, A., Mandelkow, E.-M., Biernat, J., Mandelkow, E. (2005):
Anthraquinones inhibit tau aggregation and dissolve Alzheimer's paired helical filaments in vitro and in cells
J. Biol. Chem. 280 (5), 3628 - 3635
Volltext (DOI) - Schmidt, A., Kalkhof, S., Ihling, C., Cooper, D.M.F., Sinz, A. (2005):
Mapping protein interfaces by chemical cross-linking and Fourier transform ion cyclotron resonance mass spectrometry: application to a calmodulin/adenylyl cyclase 8 peptide complex
Eur. J. Mass Spectrom. 11 (5), 525 - 534
Volltext (DOI) - Sinz, A., Kalkhof, S., Ihling, C. (2005):
Mapping protein interfaces by a trifunctional cross-linker combined with MALDI-TOF and ESI-FTICR mass spectrometry
J. Am. Soc. Mass Spectrom. 16 (12), 1921 - 1931
Volltext (DOI) - Thiede, B., Höhenwarter, W., Krah, A., Mattow, J., Schmid, M., Schmidt, F., Jungblut, P.R. (2005):
Peptide mass fingerprinting
Methods 35 (3), 237 - 247
Volltext (DOI) - von Bergen, M., Barghorn, S., Biernat, J., Mandelkow, E.-M., Mandelkow, E. (2005):
Tau aggregation is driven by a transition from random coil to beta sheet structure
Biochim. Biophys. Acta-Mol. Basis Dis. 1739 (2-3), 158 - 166
Volltext (DOI) - Wirkner, K., Köfalvi, A., Fischer, W., Günther, A., Franke, H., Gröger-Arndt, H., Nörenberg, W., Madarász, E., Vizi, E.S., Schneider, D., Sperlágh, B., Illes, P. (2005):
Supersensitivity of P2X7 receptors in cerebrocortical cell cultures after in vitro ischemia
J. Neurochem. 95 (5), 1421 - 1437
Volltext (DOI)
2004 (11)
- Benndorf, D., Davidson, I., Babel, W. (2004):
Regulation of catabolic enzymes during long-term exposure of Delftia acidovorans MC1 to chlorophenoxy herbicides
Microbiology-(UK) 150 (4), 1005 - 1014
Volltext (DOI) - Benndorf, D., Loffhagen, N., Härtig, C., Babel, W. (2004):
Growth on phenol at chemostress levels amplifies the expression of the phenol degradation pathway in Acinetobacter calcoaceticus
Eng. Life Sci. 4 (1), 38 - 42
Volltext (DOI) - Berger, K., Wissmann, D., Ihling, C., Kalkhof, S., Beck-Sickinger, A., Sinz, A., Paschke, R., Führer, D. (2004):
Quantitative proteome analysis in benign thyroid nodular disease using the fluorescent ruthenium II tris(bathophenanthroline disulfonate) stain
Mol. Cell. Endocrinol. 227 (1-2), 21 - 30
Volltext (DOI) - Mandelkow, E., von Bergen, M., Barghorn, S., Li, L., Biernat, J., Mandelkow, E.-M. (2004):
Principles of assembly of tau protein into Alzheimer paired helical filaments
Neurobiol. Aging 25 (Suppl. 2), S47
Volltext (DOI) - Mandelkow, E., von Bergen, M., Pickhardt, M., Biernat, J., Mandelkow, E.-M. (2004):
Treatment of tauopathies: How to approach it?
Neurobiol. Aging 25 (Suppl. 1), S17
Volltext (DOI) - Mattow, J., Schmidt, F., Höhenwarter, W., Siejak, F., Schaible, U.E., Kaufmann, S.H.E. (2004):
Protein identification and tracking in two-dimensional electrophoretic gels by minimal protein identifiers
Proteomics 4 (10), 2927 - 2941
Volltext (DOI) - Meinhold-Heerlein, I., Mundhenke, C., Rosel, F., Jonat, W., Nagasaki, K., von Bergen, M., Maass, N. (2004):
Protein profiling utilizing SELDI technology may detect ductal carcinoma in situ (DCIS) with high reliability in patient's serum
J. Clin. Oncol. 22 (14S), 9654
Volltext (DOI) - Pickhardt, M., Gazova, Z., von Bergen, M., Wang, Y.P., Khlistunova, I., Hascher, A., Biernat, J., Mandelkow, E.-M. (2004):
Search for small molecule inhibitors of tau aggregation into Alzheimer paired helical filaments
Neurobiol. Aging 25 (Suppl. 2), S428
Volltext (DOI) - Pleissner, K.P., Eifert, T., Buettner, S., Schmidt, F., Boehme, M., Meyer, T.F., Kaufmann, S.H.E., Jungblut, P.R. (2004):
Web-accessible proteome databases for microbial research
Proteomics 4 (5), 1305 - 1313
Volltext (DOI) - Santos, P.M., Benndorf, D., Sá-Correia, I. (2004):
Insights into Pseudomonas putida KT2440 response to phenol-induced stress by quantitative proteomics
Proteomics 4 (9), 2640 - 2652
Volltext (DOI) - von Bergen, M., Li, L., Mandelkow, E. (2004):
Conformation and stability of tau and Alzheimer paired helical filaments probed by tryptophan scanning mutagenesis
Neurobiol. Aging 25 (Suppl. 2), S419
Volltext (DOI)
2003 (1)
- Krayl, M., Benndorf, D., Loffhagen, N., Babel, W. (2003):
Use of proteomics and physiological characteristics to elucidate ecotoxic effects of methyl tert-butyl ether in Pseudomonas putida KT2440
Proteomics 3 (8), 1544 - 1552
Volltext (DOI)
2002 (11)
- Barghorn, S., von Bergen, M., Li, L., Biernat, J., Mandelkow, E.-M., Mandelkow, E. (2002):
Some mutations of tau protein in frontotemporal dementia (FTDP-17) promote aggregation of paired helical filaments by enhancing local beta structure
Neurobiol. Aging 23 (Suppl. 1), S528
Volltext (DOI) - Benndorf, D. (2002):
Bewältigung von Chemostress durch Detoxifizierung
Ehrenkolloquium anlässlich des 65. Geburtstages von Prof. Dr. habil. Wolfgang Babel, Leipzig, 18.7.2002 - Benndorf, D., Babel, W. (2002):
Assimilatory detoxification of herbicides by Delftia acidovorans MC1: Induction of two chlorocatechol 1,2-dioxygenases as response to chemostress
Microbiology-(UK) 148 (9), 2883 - 2888
Volltext (DOI) - Li, L., von Bergen, M., Biernat, J., Mandelkow, E.-M., Mandelkow, E. (2002):
Intrinsic fluorescence of tau as a probe of conformation and aggregation of Alzheimer paired helical filaments
Mol. Biol. Cell 13 (Suppl. S), 325A - Li, L., von Bergen, M., Biernat, J., Mandelkow, E.-M., Mandelkow, E. (2002):
Intrinsic fluorescence of tau as a marker for PHF aggregation and PHF inhibitors
Neurobiol. Aging 23 (Suppl. 1), S292
Volltext (DOI) - Li, L., von Bergen, M., Mandelkow, E.-M., Mandelkow, E. (2002):
Structure, stability, and aggregation of paired helical filaments from tau protein and FTDP-17 mutants probed by tryptophan scanning mutagenesis
J. Biol. Chem. 277 (44), 41390 - 41400
Volltext (DOI) - Loffhagen, N., Härtig, C., Benndorf, D., Babel, W. (2002):
Effects of growth temperature and lipophilic carbon sources on the fatty acid composition and membrane lipid fluidity of Acinetobacter calcoaceticus 69V
Acta Biotechnol. 22 (3-4), 235 - 243
Volltext (DOI) - Mandelkow, E., von Bergen, M., Li, L., Barghorn, S., Biernat, J., Mandelkow, E.-M. (2002):
Principles underlying the formation of Alzheimer paired helical filaments from tau protein: Hotspots of beta structure embedded in a random coil environment
Neurobiol. Aging 23 (Suppl. 1), S551
Volltext (DOI) - Pickhardt, M., von Bergen, M., Li, L., Mandelkow, E.-M., Mandelkow, E. (2002):
Searching for compounds that break Alzheimer-paired helical filaments
Neurobiol. Aging 23 (Suppl. 1), S507
Volltext (DOI) - Soltmann, U., Wand, H., Müller, A., Kuschk, P., Stottmeister, U. (2002):
Exposure to xenobiotics deeply affects the bacteriocenosis in the rhizosphere of helophytes
Acta Biotechnol. 22 (1-2), 161 - 166
Volltext (DOI) - Westendorf, A., Benndorf, D., Müller, R.H., Babel, W. (2002):
The two enantiospecific dichlorprop/α-ketoglutarate-dioxygenases from Delftia acidovorans MC1 - protein and sequence data of RdpA and SdpA
Microbiol. Res. 157 (4), 317 - 322
Volltext (DOI)
2001 (4)
- Benndorf, D., Loffhagen, N., Babel, W. (2001):
Protein synthesis patterns in Acinetobacter calcoaceticus induced by phenol and catechol show specificities of responses to chemostress
FEMS Microbiol. Lett. 200 (2), 247 - 252
Volltext (DOI) - Mandelkow, E.-M., Stamer, K., Biernat, J., Trinczek, B., von Bergen, M., Mandelkow, E. (2001):
Tau protein and Alzheimer's disease: aggregation; phosphorylation; and role in axonal traffic and neurite outgrowth
J. Neurochem. 77 (Suppl. 1), 1
Volltext (DOI) - von Bergen, M., Barghorn, S., Li, L., Marx, A., Biernat, J., Mandelkow, E.-M., Mandelkow, E. (2001):
Mutations of tau protein in frontotemporal dementia promote aggregation of paired helical filaments by enhancing local beta-structure
J. Biol. Chem. 276 (51), 48165 - 48174
Volltext (DOI) - von Bergen, M., Li, L., Barghorn, S., Biernat, J., Mandelkow, E.-M., Mandelkow, E. (2001):
Mutations of tau protein in frontotemporal dementia (FTDP-17) promote aggregation of paired helical filaments by enhancing local β-structure
Mol. Biol. Cell 12 (Suppl. S), 308A
2000 (6)
- Barghorn, S., Zheng-Fischhofer, Q., Ackmann, M., Biernat, J., von Bergen, M., Mandelkow, E.-M., Mandelkow, E. (2000):
Structure, microtubule interactions, and paired helical filament aggregation by tau mutants of frontotemporal dementias
Biochemistry 39 (38), 11714 - 11721
Volltext (DOI) - Benndorf, D. (Hrsg., 2000):
Molekulare Mechanismen der Resistenz von Bakterien gegenüber Xenobiotika
UFZ-Bericht 22/2000
UFZ Leipzig-Halle GmbH, Leipzig, 95 S. - Benndorf, D. (2000):
Molekulare Mechanismen der Resistenz von Bakterien gegenüber Xenobiotika am Beispiel von Acinetobacter calcoaceticus 69-V
Wissenschaftliches Kolloquium am UFZ Leipzig, Sektion Umweltmikrobiologie, Leipzig, 22.2.2000 - Friedhoff, P., von Bergen, M., Mandelkow, E.-M., Mandelkow, E. (2000):
Structure of tau protein and assembly into paired helical filaments
Biochim. Biophys. Acta-Mol. Basis Dis. 1502 (1), 122 - 132
Volltext (DOI) - von Bergen, M., Friedhoff, P., Biernat, J., Heberle, J., Mandelkow, E.-M., Mandelkow, E. (2000):
Assembly of τ protein into Alzheimer paired helical filaments depends on a local sequence motif (306VQIVYK311) forming β structure
Mol. Biol. Cell 11 (Suppl. S), 363A - von Bergen, M., Friedhoff, P., Biernat, J., Heberle, J., Mandelkow, E.-M., Mandelkow, E. (2000):
Assembly of τ protein into Alzheimer paired helical filaments depends on a local sequence motif (306VQIVYK311) forming β structure
Proc. Natl. Acad. Sci. U.S.A. 97 (10), 5129 - 5134
Volltext (DOI)
1999 (1)
- Benndorf, D., Loffhagen, N., Babel, W. (1999):
Induction of heat shock proteins in response to primary alcohols in Acinetobacter calcoaceticus
Electrophoresis 20 (4-5), 781 - 789
Volltext (DOI)
1997 (1)
- Benndorf, D., Loffhagen, N., Babel, W. (1997):
Chemicals and heat generate different protein patterns in Acinetobacter calcoaceticus
J. Basic Microbiol. 37 (3), 167 - 174
Volltext (DOI)