Fluorescense in-situ hybridisation image of Acinetobacter spp. surviving high concentrations of antibiotics.
Sample and image: Dr. Niculina Musat, ProVIS, UFZ
Sample and image: Dr. Niculina Musat, ProVIS, UFZ
Helium-ion micrograph of a vero cell infected with Sars-CoV2 virusses.
Sample: Prof. Dr. Uwe G. Liebert, Universität Leipzig. Image: Dr. Matthias Schmidt, ProVIS, UFZ.
Sample: Prof. Dr. Uwe G. Liebert, Universität Leipzig. Image: Dr. Matthias Schmidt, ProVIS, UFZ.
Carbon (red) and nitrogen (blue) assimilation activity in a microbial biofilm (green) visualised by nanoSIMS.
Sample: Dr. Kim Milferstedt. Image: Dr. Hryhoriy Stryhanyuk, ProVIS, UFZ.
Sample: Dr. Kim Milferstedt. Image: Dr. Hryhoriy Stryhanyuk, ProVIS, UFZ.
Nanostructure on the eye of a moth as seen by helium-ion microscopy.
Image: Dr. Matthias Schmidt, ProVIS, UFZ.
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Image: Dr. Matthias Schmidt, ProVIS, UFZ.
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TiOx (yellow) and Ti (blue) in calcinated guava seed as seen by ToF-SIMS.
Sample: Dr. María P. Elizalde (BUAP, Mexico). Image: Dr. Hryhoriy Stryhanyuk, ProVIS, UFZ.
Sample: Dr. María P. Elizalde (BUAP, Mexico). Image: Dr. Hryhoriy Stryhanyuk, ProVIS, UFZ.
Tracing freshly-assimilated carbon (red) and nitrogen (blue) in a micro-algal biofilm with nanoSIMS.
Sample: Dr. Kim Milferstedt. Image: Dr. Hryhoriy Stryhanyuk, ProVIS, UFZ.
Sample: Dr. Kim Milferstedt. Image: Dr. Hryhoriy Stryhanyuk, ProVIS, UFZ.
Scanning electron micrograph of roots in soil overlaid with chemical maps obtained from energy-dispersive X-ray spectroscopy.
Sample & Image: Dr. Chaturanga Bandara, Dr. Matthias Schmidt, ProVIS, UFZ.
Sample & Image: Dr. Chaturanga Bandara, Dr. Matthias Schmidt, ProVIS, UFZ.
Bacteria in rhizosphere soil detected by catalyzed reporter deposition fluorescense in-situ hybridisation.
Sample & Image: Dr. Chaturanga Bandara, Dr. Niculina Musat
Sample & Image: Dr. Chaturanga Bandara, Dr. Niculina Musat
Spatial distribution of bromoxynil measured in a sagittal section of a zebrafish embryo by MALDI-FT-ICR MS.
Sample and Image: Sophia Leippe, University
Sample and Image: Sophia Leippe, University
ProVIS
Centre for Chemical Microscopy
The ProVIS - Centre for Chemical Microscopy is an unique research platform that combines high resolution structural and chemical imaging with high resolution mass spectrometry for metabolomics, proteomics and metallomics. The mission of ProVIS is to identify and characterize (bio)-chemical processes driven by microorganisms in soil, water, plants, human tissue and blood.
ProVIS provides access to scientific instrumentation and laboratory facilities with expert guidance and support to enable collaborative and multidisciplinary research. We welcome users from academia and industry.
Your Experiment in ProVIS
Procedure for running an experiment at ProVIS:
- Contact us and discuss your idea with a group leader group leader
- Fill and sign the application form and send it to isobiosek@ufz.de
- Await notification of approval or rejection from scientific panel in ProVIS within the following month.
Expert Groups and Equipment
The core technique of the group is Fluorescence in situ hybridization (FISH) for cell identification.
Instrumentation
- epifluorescence microscope Zeiss Axio Imager Z2
laser microdissection system
- Bruker SolariX 12T FT-ICR mass spectrometer
- Bruker Autoflex Speed MALDI-ToF mass spectrometer
Instrumentation
Zeiss Merlin VP Compact
Field-emitting scanning electron microscope with Bruker Quantax XFlash Flat Quad energy-dispersive X-ray spectrometer.
- high-resolution imaging (SE, BSE, STEM)
- elemental nano-analytics
Zeiss Orion NanoFab
Scanning helium ion microscope equipped with electron-flood gun for charge compensation and gas-injection system.
- high-resolution imaging (SE detection)
- nano-fabrication (ion-milling with He or Ne)
WITec Alpha 300RA
Confocal Raman microscope with AFM. Excitation: solid state lasers 532nm, 785nm and He-Ne laser. Equipped with True Surface option.
- acquisition of Raman spectra
- chemical mapping
- high-resolution atomic force microscopy
Contact
Dr. Matthias Schmidt
matthias.schmidt@ufz.de
+49 341 235 1358
Instrumentation
- Cameca nanoSIMS 50L sector-field secondary ion mass spectrometer
- IONTOF ToF.SIMS.5 time-of-flight secondary ion mass spectrometer
Contact
Dr. Hryhoriy Stryhanyuk
gregory.stryhanyuk@ufz.de
+49 341 235 1359
- High-resolution mass spectrometry of peptides and proteins (global analysis or gel-bands)
- Analysis of peptide derivatization
- Analysis of isotope incorporation into peptides
- Instrument: LC-MS/MS (Orbitrap Fusion) coupled via an Advion
- We are happy to measure in scientific cooperations but we also offer commercial analyses. Do not hesitate to contact us (lorenz.adrian@ufz.de) if you are interested.
Instrumentation
- Neptune Multiple-collector inductively coupled plasma mass spectrometry (Neptune MC-ICPMS, Thermo Fisher Scientific) with Trace 1310 GC (gas chromatography, Thermo Fisher Scientific)
Contact
Dr. Matthias Gehre
matthias.gehre@ufz.de
+ 49 (0) 341 235 1361
Dr. Steffen Kümmel
steffen.kuemmel@ufz.de
+ 49 (0) 341 235 1362
Sample Preparation and Storage:
- Leica EM CPD300 critical point drier
- Leica EM SCD 500 sputter-coater
- Leica EM HPM100 high-pressure freezer
- Leica EM GP plunge freezer
- Leica EM AFS2+EM FSP freeze substitution system
- Leica EM UC7 ultra-microtome
- Leica VT1200S vibratome
- tec-lab liquid nitrogen sample storage
Light Microscopy:
- 2x Leica M205 FA light microscope
- Zeiss Observer.Z1 AXIO+PALM laser microdissection system
- Zeiss Imager.Z2 AXIO fluorescence microscope (3D stacks)
- Sensofar SNeox 3D optical profilometer with Nanosurf LensAFM
- WITec Raman microscope with AFM
Electron and Helium Ion Microscopy
- Zeiss Merlin VP scanning electron microscope (STEM, cryo-SEM, EDX)
- Zeiss Orion NanoFab (ion-beam imaging, charge compensation, nano-structuring)
Mass Spectrometry:
- ION-ToF ToF.SIMS5 SIMS microprobe (cryo stage)
- Cameca nanoSIMS 50L SIMS microprobe
- SPECTRO-MS ICP-MS double-focussing sector field mass-spectrometer
- Photon Machines 193nm excimer laser (material ablation for ICP-MS)
- Bruker autoflex speed MALDI-ToF
- Bruker solariX XR ultra-high resolution Fourier transform ion cyclotron mass spectrometer
- Thermo Scientific NEPTUNE multicollector ICP-MS
- Thermo Scientific Orbitrap Fusion proteomics mass spectrometer hyphenated to a nanoHPLC via an Advion NanoMate
- Correlia, an ImageJ plug-in for the cp-registration of multimodal correlative microscopy data-sets.
www.ufz.de/correlia
- identification of microorganisms by fluorescent labeling (FISH and CARD-FSIH)
- sample preparation of biological specimens for microscopic techniques, including correlative approaches using cryo- or chemical fixation and resin embedding and ultra-thin sectioning.
- sample preparation of microbial samples for single cell analyses
- isotope labeling experiments
- protein-stable isotope probing (SIP)
- compound-specific isotope analysis (CSIA) of δ37Cl, δ33S and δ34S in organic compounds
- stable isotope analysis for forensic questions
- isotope fractionation for the characterization of biogeochemical processes
- correlative microscopy and 2D image registration
- high-resolution imaging of biological specimens with light, electrons and ions
- surface modification
- high-resolution surface analytics
- micro-analysis of geological specimen
- microbe-root-soil interplay in the rhizosphere
- microbial mediated corrosion
- effects and fate of antibiotics in environmental compartments
- microbial ecosystems (predatory bacteria, bacteriophages, phototroph-heterotroph)
- investigation of the fate of organic chemicals in the environment
- assessment of in situ transformation and (bio)degradation of organic compounds by stable isotope fractionation
- elucidation of transformation pathways of organic compounds by stable isotope analytics
- isotope forensics
- incorporation of chemicals into the biomass of microorganisms
- investigation of metabolic pathways
- determination of protein expression patterns, protein modification and derivatization
Index:
You could use our publication index for further requests.
2023 (6)
- Bandara, C.D., Schmidt, M., Davoudpour, Y., Stryhanyuk, H., Richnow, H.H., Musat, N. (2023):
Corrigendum: Microbial identification, high-resolution microscopy and spectrometry of the rhizosphere in its native spatial context
Front. Plant Sci. 13 , art. 1125001
full text (doi) - Grosch Schroeder, B., İstanbullu, H.B., Schmidt, M., Logroño, W., Harms, H., Nikolausz, M. (2023):
Effect of alkaline and mechanical pretreatment of wheat straw on methanogenic enrichment cultures from Pachnoda marginata larva gut
Fermentation 9 (1), art. 60
full text (doi) - Herzsprung, P., Kamjunke, N., Wilske, C., Friese, K., Boehrer, B., Rinke, K., Lechtenfeld, O.J., von Tümpling, W. (2023):
Data evaluation strategy for identification of key molecular formulas in dissolved organic matter as proxies for biogeochemical reactivity based on abundance differences from ultrahigh resolution mass spectrometry
Water Res. 232 , art. 119672
full text (doi) - Höflich, K., Hobler, G., Allen, F.I., Wirtz, T., Rius, G., Krasheninnikov, A.V., Schmidt, M., Utke, I., Klingner, N., Osenberg, M., McElwee-White, L., Córdoba, R., Djurabekova, F., Manke, I., Moll, P.J.W., Manoccio, M., De Teresa, J.M., Bischoff, L., Michler, J., De Castro, O., Delobbe, A., Dunne, P., Dobrovolskiy, O.V., Freese, N., Gölzhäuser, A., Mazarov, P., Möller, W., Pérez-Murano, F., Philipp, P., Vollnhals, F., Hlawacek, G. (2023):
Roadmap for focused ion beam technologies
arXiv 10.48550/arXiv.2305.19631 - Jennings, E.K., Sierra Olea, M., Kaesler, J.M., Hübner, U., Reemtsma, T., Lechtenfeld, O.J. (2023):
Stable isotope labeling for detection of ozonation byproducts in effluent organic matter with FT-ICR-MS
Water Res. 229 , art. 119477
full text (doi) - Lohse, M., Santangeli, M., Steininger-Mairinger, T., Oburger, E., Reemtsma, T., Lechtenfeld, O.J., Hann, S. (2023):
The effect of root hairs on exudate composition: a comparative non-targeted metabolomics approach
Anal. Bioanal. Chem. 415 (5), 823 - 840
full text (doi)
2022 (9)
- Arandia-Gorostidi, N., Berthelot, H., Calabrese, F., Stryhanyuk, H., Klawonn, I., Iversen, M., Nahar, N., Grossart, H.-P., Ploug, H., Musat, N. (2022):
Efficient carbon and nitrogen transfer from marine diatom aggregates to colonizing bacterial groups
Sci. Rep. 12 , art. 14949
full text (doi) - Kaniowska, D., Wenk, K., Rademacher, P., Weiss, R., Fabian, C., Schulz, I., Guthardt, M., Lange, F., Greiser, S., Schmidt, M., Braumann, U.-D., Emmrich, F., Koehl, U., Jaimes, Y. (2022):
Extracellular vesicles of mesenchymal stromal cells can be taken up by microglial cells and partially prevent the stimulation induced by β-amyloid
Stem Cell Rev. Rep. 18 (3), 1113 - 1126
full text (doi) - Pertzborn, D., Arolt, C., Ernst, G., Lechtenfeld, O.J., Kaesler, J., Pelzel, D., Guntinas-Lichius, O., von Eggeling, F., Hoffmann, F. (2022):
Multi-class cancer subtyping in salivary gland carcinomas with MALDI imaging and deep learning
Cancers 14 (17), art. 4342
full text (doi) - Phillips, E., Bulka, O., Picott, K., Kümmel, S., Edwards, E., Nijenhuis, I., Gehre, M., Dworatzek, S., Webb, J., Sherwood Lollar, B. (2022):
Investigation of active site amino acid influence on carbon and chlorine isotope fractionation during reductive dechlorination
FEMS Microbiol. Ecol. 98 (8), fiac072
full text (doi) - Scarabotti, F., Bühler, K., Schmidt, M., Harnisch, F. (2022):
Thickness and roughness of transparent gold-palladium anodes have no impact on growth kinetics and yield coefficients of early-stage Geobacter sulfurreducens biofilms
Bioelectrochemistry 144 , art. 108043
full text (doi) - Schmidt, M. (2022):
Hochaufgelöste Mikrobenporträts mit hoher Tiefenschärfe
Biospektrum 28 (4), 377 - 380
full text (doi) - Tamisier, M., Schmidt, M., Vogt, C., Kümmel, S., Stryhanyuk, H., Musat, N., Richnow, H.-H., Musat, F. (2022):
Iron corrosion by methanogenic archaea characterized by stable isotope effects and crust mineralogy
Environ. Microbiol. 24 (2), 583 - 595
full text (doi) - You, X., Kallies, R., Kühn, I., Schmidt, M., Harms, H., Chatzinotas, A., Wick, L.Y. (2022):
Phage co-transport with hyphal-riding bacteria fuels bacterial invasion in a water-unsaturated microbial model system
ISME J. 16 (5), 1275 - 1283
full text (doi) - Zherebker, A., Rukhovich, G.D., Sarycheva, A., Lechtenfeld, O.J., Nikolaev, E.N. (2022):
Aromaticity index with improved estimation of carboxyl group contribution for biogeochemical studies
Environ. Sci. Technol. 56 (4), 2729 - 2737
full text (doi)
2021 (31)
- Bandara, C.D., Schmidt, M., Davoudpour, Y., Stryhanyuk, H., Richnow, H.H., Musat, N. (2021):
Microbial identification, high-resolution microscopy and spectrometry of the rhizosphere in its native spatial context
Front. Plant Sci. 12 , art. 668929
full text (doi) - Budhraja, R., Karande, S., Ding, C., Ullrich, M.K., Wagner, S., Reemtsma, T., Adrian, L. (2021):
Characterization of membrane-bound metalloproteins in the anaerobic ammonium-oxidizing bacterium “Candidatus Kuenenia stuttgartiensis” strain CSTR1
Talanta 223 (Part 2), art. 121711
full text (doi) - Calabrese, F., Stryhanyuk, H., Moraru, C., Schlömann, M., Wick, L.Y., Richnow, H.H., Musat, F., Musat, N. (2021):
Metabolic history and metabolic fitness as drivers of anabolic heterogeneity in isogenic microbial populations
Environ. Microbiol. 23 (11), 6764 - 6776
full text (doi) - Chakaroun, R.M., Massier, L., Heintz-Buschart, A., Said, N., Fallmann, J., Crane, A., Schütz, T., Dietrich, A., Blüher, M., Stumvoll, M., Musat, N., Kovacs, P. (2021):
Circulating bacterial signature is linked to metabolic disease and shifts with metabolic alleviation after bariatric surgery
Genome Med. 13 , art. 105
full text (doi) - Chen, S.-C., Budhraja, R., Adrian, L., Calabrese, F., Stryhanyuk, H., Musat, N., Richnow, H.-H., Duan, G.-L., Zhu, Y.-G., Musat, F. (2021):
Novel clades of soil biphenyl degraders revealed by integrating isotope probing, multi-omics, and single-cell analyses
ISME J. 15 (12), 3508 - 3521
full text (doi) - da Silva, M.P., Blaurock, K., Beudert, B., Fleckenstein, J.H., Hopp, L., Peiffer, S., Reemtsma, T., Lechtenfeld, O.J. (2021):
Delineating source contributions to stream dissolved organic matter composition under baseflow conditions in forested headwater catchments
J. Geophys. Res.-Biogeosci. 126 (8), e2021JG006425
full text (doi) - Decelle, J., Veronesi, G., LeKieffre, C., Gallet, B., Chevalier, F., Stryhanyuk, H., Marro, S., Ravanel, S., Tucoulou, R., Schieber, N., Finazzi, G., Schwab, Y., Musat, N. (2021):
Subcellular architecture and metabolic connection in the planktonic photosymbiosis between Collodaria (radiolarians) and their microalgae
Environ. Microbiol. 23 (11), 6569 - 6586
full text (doi) - Eziuzor, S.C., Schmidt, M., Vogt, C. (2021):
Anaerobic benzene mineralization by natural microbial communities from Niger Delta
Biodegradation 32 (1), 37 - 52
full text (doi) - Fazia, S., Amalfitano, S., Venturi, S., Pacini, N., Vazquez, S., Olaka, L.A., Tassi, F., Crognale, S., Herzsprung, P., Lechtenfeld, O.J., Cabassi, J., Capecchiacci, F., Rossetti, S., Yakimov, M.M., Vaselli, O., Harper, D.M., Butturini, A. (2021):
High concentrations of dissolved biogenic methane associated with cyanobacterial blooms in East African lake surface water
Commun. Biol. 4 , art. 845
full text (doi) - Giannopoulos, K., Benettoni, P., Holbrook, T.R., Reemtsma, T., Wagner, S., Lechtenfeld, O.J. (2021):
Direct analysis of fulvic acids adsorbed onto capped gold nanoparticles by laser desorption ionization Fourier-transform ion cyclotron resonance mass spectrometry
Environ. Sci.-Nano 8 (8), 2336 - 2346
full text (doi) - Han, L., Kaesler, J., Peng, C., Reemtsma, T., Lechtenfeld, O.J. (2021):
Online counter gradient LC-FT-ICR-MS enables detection of highly polar natural organic matter fractions
Anal. Chem. 93 (3), 1740 - 1748
full text (doi) - Hensgens, G., Lechtenfeld, O.J., Guillemette, F., Laudon, H., Berggren, M. (2021):
Impacts of litter decay on organic leachate composition and reactivity
Biogeochemistry 154 , 99 - 117
full text (doi) - Herzsprung, P., Kamjunke, N., von Tümpling, W., Wilske, C., Reemtsma, T., Lechtenfeld, O.J. (2021):
Judgement and assessment of high resolution mass spectrometry investigations of DOM – Examples for identification of biogeochemical processes in waters
Vom Wasser 119 (2), 47 - 51
full text (doi) - Kruse, S., Türkowsky, D., Birkigt, J., Matturro, B., Franke, S., Jehmlich, N., von Bergen, M., Westermann, M., Rossetti, S., Nijenhuis, I., Adrian, L., Diekert, G., Goris, T. (2021):
Interspecies metabolite transfer and aggregate formation in a co-culture of Dehalococcoides and Sulfurospirillum dehalogenating tetrachloroethene to ethene
ISME J. 15 (6), 1794 - 1809
full text (doi) - Liu, X., Li, W., Kümmel, S., Merbach, I., Sood, U., Gupta, V., Lal, R., Richnow, H.H. (2021):
Soil from a hexachlorocyclohexane contaminated field site inoculates wheat in a pot experiment to facilitate the microbial transformation of β-hexachlorocyclohexane examined by compound-specific isotope analysis
Environ. Sci. Technol. 55 (20), 13812 - 13821
full text (doi) - Liu, X., Wu, L., Kümmel, S., Richnow, H.H. (2021):
Characterizing the biotransformation of hexachlorocyclohexanes in wheat using compound-specific stable isotope analysis and enantiomer fraction analysis
J. Hazard. Mater. 406 , art. 124301
full text (doi) - Lohse, M., Haag, R., Lippold, E., Vetterlein, D., Reemtsma, T., Lechtenfeld, O.J. (2021):
Direct imaging of plant metabolites in the rhizosphere using laser desorption ionization ultra-high resolution mass spectrometry
Front. Plant Sci. 12 , art. 753812
full text (doi) - Muniz, M.S., Halbach, K., Araruna, I.C.A., Martins, R.X., Seiwert, B., Lechtenfeld, O., Reemtsma, T., Farias, D. (2021):
Moxidectin toxicity to zebrafish embryos: Bioaccumulation and biomarker responses
Environ. Pollut. 283 , art. 117096
full text (doi) - Neubert, K., Schmidt, M., Harnisch, F. (2021):
Platinized titanium as alternative cost-effective anodes for the efficient Kolbe electrolysis in aqueous electrolyte solutions
ChemSusChem 14 (15), 3097 - 3109
full text (doi) - Nguyen, A.V., Lai, B., Adrian, L., Krömer, J.O. (2021):
The anoxic electrode-driven fructose catabolism of Pseudomonas putida KT2440
Microb. Biotechnol. 14 (4), 1784 - 1796
full text (doi) - Ouyang, W.-Y., Birkigt, J., Richnow, H.H., Adrian, L. (2021):
Anaerobic transformation and detoxification of sulfamethoxazole by sulfate-reducing enrichments and Desulfovibrio vulgaris
Environ. Sci. Technol. 55 (1), 271 - 282
full text (doi) - Rummel, C.D., Lechtenfeld, O.J., Kallies, R., Benke, A., Herzsprung, P., Rynek, R., Wagner, S., Potthoff, A., Jahnke, A., Schmitt-Jansen, M. (2021):
Conditioning film and early biofilm succession on plastic surfaces
Environ. Sci. Technol. 55 (16), 11006 - 11018
full text (doi) - Sartori Jeunon Gontijo, E., Herzsprung, P., Lechtenfeld, O.J., de Castro Bueno, C., Barth, J.A.C., Rosa, A.H., Friese, K. (2021):
Multi-proxy approach involving ultrahigh resolution mass spectrometry and self-organising maps to investigate the origin and quality of sedimentary organic matter across a subtropical reservoir
Org. Geochem. 151 , art. 104165
full text (doi) - Schmidt, M., Byrne, J.M., Maasilta, I.J. (2021):
Bio-imaging with the helium-ion microscope: A review
Beilstein J. Nanotechnol. 12 , 1 - 23
full text (doi) - Schmidt, M., Rohde, F., Braumann, U.-D. (2021):
Visualization and co-registration of correlative microscopy data with the ImageJ plug-in Correlia
In: Müller-Reichert, T., Verkade, P. (eds.)
Correlative light and electron microscopy IV
Methods Cell Biol. 162
Elsevier, p. 353 - 388
full text (doi) - Shahryari, S., Talaee, M., Haghbeen, K., Adrian, L., Vali, H., Shahbani Zahiri, H., Noghabi, K.A. (2021):
New provisional function of OmpA from Acinetobacter sp. strain SA01 based on environmental challenges
mSystems 6 (1), e01175-20
full text (doi) - Sharma, M., Singh, D.N., Budhraja, R., Sood, P., Rawat, C.D., Adrian, L., Richnow, H.-H., Singh, Y., Negi, R.K., Lal, R. (2021):
Comparative proteomics unravelled the hexachlorocyclohexane (HCH) isomers specific responses in an archetypical HCH degrading bacterium Sphingobium indicum B90A
Environ. Sci. Pollut. Res. 28 (30), 41380 - 41395
full text (doi) - Stripp, S.T., Oltmanns, J., Müller, C.S., Ehrenberg, D., Schlesinger, R., Heberle, J., Adrian, L., Schünemann, V., Pierik, A.J., Soboh, B. (2021):
Electron inventory of the iron-sulfur scaffold complex HypCD essential in [NiFe]-hydrogenase cofactor assembly
Biochem. J. 478 (17), 3281 - 3295
full text (doi) - Trueba-Santiso, A., Wasmund, K., Soder-Walz, J.M., Marco-Urrea, E., Adrian, L. (2021):
Genome sequence, proteome profile, and identification of a multiprotein reductive dehalogenase complex in Dehalogenimonas alkenigignens strain BRE15M
J. Proteome Res. 20 (1), 613 - 623
full text (doi) - Uwizeye, C., Mars Brisbin, M., Gallet, B., Chevalier, F., LeKieffre, C., Schieber, N.L., Falconet, D., Wangpraseurt, D., Schertel, L., Stryhanyuk, H., Musat, N., Mitarai, S., Schwab, Y., Finazzi, G., Decelle, J. (2021):
Cytoklepty in the plankton: A host strategy to optimize the bioenergetic machinery of endosymbiotic algae
Proc. Natl. Acad. Sci. U.S.A. 118 (27), e2025252118
full text (doi) - Wilske, C., Herzsprung, P., Lechtenfeld, O.J., Kamjunke, N., Einax, J.W., von Tümpling, W. (2021):
New insights into the seasonal variation of DOM quality of a humic-rich drinking-water reservoir—coupling 2D-fluorescence and FTICR MS measurements
Water 13 (12), art. 1703
full text (doi)
2020 (26)
- Benettoni, P., Ye, J.-Y., Holbrook, T.R., Calabrese, F., Wagner, S., Zarejousheghani, M., Griebel, J., Ullrich, M.K., Musat, N., Schmidt, M., Flyunt, R., Reemtsma, T., Richnow, H.-H., Stryhanyuk, H. (2020):
Surface cleaning and sample carrier for complementary high-resolution imaging techniques
Biointerphases 15 (2), art. 021005
full text (doi) - Butturini, A., Amalfitano, S., Herzsprung, P., Lechtenfeld, O.J., Venturi, S., Olaka, L.A., Pacini, N., Harper, D.M., Tassi, F., Fazi, S. (2020):
Dissolved organic matter in continental hydro-geothermal systems: Insights from two hot springs of the East African Rift Valley
Water 12 (12), art. 3512
full text (doi) - Butturini, A., Herzsprung, P., Lechtenfeld, O.J., Venturi, S., Amalfitano, S., Vazquez, E., Pacini, N., Harper, D.M., Tassi, F., Fazi, S. (2020):
Dissolved organic matter in a tropical saline-alkaline lake of the East African Rift Valley
Water Res. 173 , art. 115532
full text (doi) - da Silva, M.P., Kaesler, J.M., Reemtsma, T., Lechtenfeld, O.J. (2020):
Absorption mode spectral processing improves data quality of natural organic matter analysis by Fourier-transform ion cyclotron resonance mass spectrometry
J. Am. Soc. Mass Spectrom. 31 (7), 1615 - 1618
full text (doi) - Davoudpour, Y., Schmidt, M., Calabrese, F., Richnow, H.H., Musat, N. (2020):
High resolution microscopy to evaluate the efficiency of surface sterilization of Zea Mays seeds
PLOS One 15 (11), e0242247
full text (doi) - Decelle, J., Veronesi, G., Gallet, B., Stryhanyuk, H., Benettoni, P., Schmidt, M., Tucoulou, R., Passarelli, M., Bohic, S., Clode, P., Musat, N. (2020):
Subcellular chemical imaging: New avenues in cell biology
Trends Cell Biol. 30 (3), 173 - 188
full text (doi) - Deobald, D., Hanna, R., Shahryari, S., Layer, G., Adrian, L. (2020):
Identification and characterization of a bacterial core methionine synthase
Sci. Rep. 10 , art. 2100
full text (doi) - Ding, C., Adrian, L. (2020):
Comparative genomics and proteomics in "Candidatus Kuenenia stuttgartiensis" reveal high genomic plasticity in the overall genome structure, CRISPR loci and surface proteins
BMC Genomics 21 , art. 851
full text (doi) - Franke, S., Seidel, K., Adrian, L., Nijenhuis, I. (2020):
Dual element (C/Cl) isotope analysis indicates distinct mechanisms of reductive dehalogenation of chlorinated ethenes and dichloroethane in Dehalococcoides mccartyi strain BTF08 with defined reductive dehalogenase inventories
Front. Microbiol. 11 , art. 1507
full text (doi) - Giannopoulos, K., Lechtenfeld, O.J., Holbrook, T.R., Reemtsma, T., Wagner, S. (2020):
Exploring the potential of laser desorption ionization time-of-flight mass spectrometry to analyse organic capping agents on inorganic nanoparticle surfaces
Anal. Bioanal. Chem. 412 (22), 5261 - 5271
full text (doi) - Herzsprung, P., Wentzky, V.C., Kamjunke, N., von Tümpling, W., Wilske, C., Friese, K., Boehrer, B., Reemtsma, T., Rinke, K., Lechtenfeld, O.J. (2020):
Improved understanding of dissolved organic matter processing in freshwater using complementary experimental and machine learning approaches
Environ. Sci. Technol. 54 (21), 13556 - 13565
full text (doi) - Hund-Rinke, K., Sinram, T., Schlich, K., Nickel, C., Dickehut, H.P., Schmidt, M., Kühnel, D. (2020):
Attachment efficiency of nanomaterials to algae as an important criterion for ecotoxicity and grouping
Nanomaterials 10 (6), art. 1021
full text (doi) - Kamjunke, N., Lechtenfeld, O.J., Herzsprung, P. (2020):
Quality of dissolved organic matter driven by autotrophic and heterotrophic microbial processes in a large river
Water 12 (6), art. 1577
full text (doi) - Kümmel, S., Horst, A., Gelman, F., Strauss, H., Richnow, H.H., Gehre, M. (2020):
Simultaneous compound-specific analysis of δ33S and δ34S in organic compounds by GC-MC-ICPMS using medium- and low-mass-resolution modes
Anal. Chem. 92 (21), 14685 - 14692
full text (doi) - Liu, J., Adrian, L., Häggblom, M.M. (2020):
Transcriptomic and proteomic responses of the organohalide-respiring bacterium Desulfoluna spongiiphila to growth with 2,6-dibromophenol as the electron acceptor
Appl. Environ. Microb. 86 (5), e02146-19
full text (doi) - Liu, X., Wu, L., Kümmel, S., Merbach, I., Lal, R., Richnow, H.H. (2020):
Compound-specific isotope analysis and enantiomer fractionation to characterize the transformation of hexachlorocyclohexane isomers in a soil–wheat pot system
Environ. Sci. Technol. 54 (14), 8690 - 8698
full text (doi) - Liu, Y., Kümmel, S., Yao, J., Nijenhuis, I., Richnow, H.-H. (2020):
Dual C–Cl isotope analysis for characterizing the anaerobic transformation of α, β, γ, and δ-hexachlorocyclohexane in contaminated aquifers
Water Res. 184 , art. 116128
full text (doi) - Liu, Y., Renpenning, J., Nijenhuis, I., Richnow, H.-H. (2020):
Dual C–Cl isotope analysis for characterizing the reductive dechlorination of α- and γ-hexachlorocyclohexane by two Dehalococcoides mccartyi strains and an enrichment culture
Environ. Sci. Technol. 54 (12), 7250 - 7260
full text (doi) - Lohse, M., Blaser, S.R.G.A., Vetterlein, D., Schlüter, S., Oburger, E., Reemtsma, T., Lechtenfeld, O.J. (2020):
Online nano solid phase extraction Fourier-transform ion cyclotron resonance mass spectrometry workflow to analyze small scale gradients of soil solution organic matter in the rhizosphere
Anal. Chem. 92 (15), 10442 - 10449
full text (doi) - Massier, L., Chakaroun, R., Tabei, S., Crane, A., Didt, K.D., Fallmann, J., von Bergen, M., Haange, S.-B., Heyne, H., Stumvoll, M., Gericke, M., Dietrich, A., Blüher, M., Musat, N., Kovacs, P. (2020):
Adipose tissue derived bacteria are associated with inflammation in obesity and type 2 diabetes
Gut 69 (10), 1796 - 1806
full text (doi) - Rohde, F., Braumann, U.-D., Schmidt, M. (2020):
Correlia: an ImageJ plug‐in to co‐register and visualise multi‐modal correlative micrographs
J. Microsc. 280 (1), 3 - 11
full text (doi) - Ros, M., Blaya, J., Baldrian, P., Bastida, F., Richnow, H.H., Jehmlich, N., Pascual, J.A. (2020):
In vitro elucidation of suppression effects of composts to soil-borne pathogen Phytophthora nicotianae on pepper plants using 16S amplicon sequencing and metaproteomics
Renew. Agr. Food Syst. 35 (2), 206 - 214
full text (doi) - Tayyebi Sabet Khomami, N., Philippe, A., Abu Quba, A.A., Lechtenfeld, O.J., Guigner, J.-M., Heissler, S., Schaumann, G.E. (2020):
Validation of a field deployable reactor for in situ formation of NOM-engineered nanoparticle corona
Environ. Sci.-Nano 7 (2), 486 - 500
full text (doi) - Wilske, C., Herzsprung, P., Lechtenfeld, O.J., Kamjunke, N., von Tümpling, W. (2020):
Photochemically induced changes of dissolved organic matter in a humic‐rich and forested stream
Water 12 , art. 331
full text (doi) - Zherebker, A., Kim, S., Schmitt-Kopplin, P., Spencer, R.G.M., Lechtenfeld, O.J., Podgorski, D.C., Hertkorn, N., Harir, M., Nurfajin, N., Koch, B., Nikolaev, E.N., Shirshin, E.A., Berezin, S.A., Kats, D.S., Rukhovich, G.D., Perminova, I.V. (2020):
Interlaboratory comparison of humic substances compositional space as measured by Fourier transform ion cyclotron resonance mass spectrometry (IUPAC Technical Report)
Pure Appl. Chem. 92 (9), 1447 - 1467
full text (doi) - Zherebker, A., Lechtenfeld, O.J., Sarycheva, A., Kostyukevich, Y., Kharybin, O., Fedoros, E.I., Nikolaev, E.N. (2020):
Refinement of compound aromaticity in complex organic mixtures by stable isotope label assisted ultrahigh-resolution mass spectrometry
Anal. Chem. 92 (13), 9032 - 9038
full text (doi)
2019 (20)
- Benettoni, P., Stryhanyuk, H., Wagner, S., Kollmer, F., Moreno Osorio, J.H., Schmidt, M., Reemtsma, T., Richnow, H.-H. (2019):
Identification of nanoparticles and their localization in algal biofilm by 3D-imaging secondary ion mass spectrometry
J. Anal. At. Spectrom. 34 (6), 1098 - 1108
full text (doi) - Budhraja, R., Ding, C., Walter, P., Wagner, S., Reemtsma, T., Sawers, G., Adrian, L. (2019):
The impact of species, respiration type, growth phase and genetic inventory on absolute metal content of intact bacterial cells
Metallomics 11 (5), 925 - 935
full text (doi) - Chen, S.-C., Musat, N., Lechtenfeld, O.J., Paschke, H., Schmidt, M., Said, N., Popp, D., Calabrese, F., Stryhanyuk, H., Jaekel, U., Zhu, Y.-G., Joye, S.B., Richnow, H.-H., Widdel, F., Musat, F. (2019):
Anaerobic oxidation of ethane by archaea from a marine hydrocarbon seep
Nature 568 (7750), 108 - 111
full text (doi) - Currier, R.B., Ulrich, K., Leroux, A.E., Dirdjaja, N., Deambrosi, M., Bonilla, M., Ahmed, Y.L., Adrian, L., Antelmann, H., Jakob, U., Comini, M.A., Krauth-Siegel, R.L. (2019):
An essential thioredoxin-type protein of Trypanosoma brucei acts as redox-regulated mitochondrial chaperone
PLoS Pathog. 15 (9), e1008065
full text (doi) - Decelle, J., Stryhanyuk, H., Gallet, B., Veronesi, G., Schmidt, M., Balzano, S., Marro, S., Uwizeye, C., Jouneau, P.-H., Lupette, J., Jouhet, J., Maillot-Maréchal, E., Schwab, Y., Schieber, N.L., Tucoulou, R., Richnow, H., Finazzi, G., Musat, N. (2019):
Algal remodeling in a ubiquitous planktonic photosymbiosis
Curr. Biol. 29 (6), 968 - 978.e4
full text (doi) - Dusny, C., Lohse, M., Reemtsma, T., Schmid, A., Lechtenfeld, O.J. (2019):
Quantifying a biocatalytic product from a few living microbial cells using microfluidic cultivation coupled to FT-ICR-MS
Anal. Chem. 91 (11), 7012 - 7018
full text (doi) - Halbach, K., Wagner, S., Scholz, S., Luckenbach, T., Reemtsma, T. (2019):
Elemental imaging (LA-ICP-MS) of zebrafish embryos to study the toxicokinetics of the acetylcholinesterase inhibitor naled
Anal. Bioanal. Chem. 411 (3), 617 - 627
full text (doi) - Horst, A., Bonifacie, M., Bardoux, G., Richnow, H.H. (2019):
Isotopic characterization (2H, 13C, 37Cl, 81Br) of abiotic degradation of methyl bromide and methyl chloride in water and implications for future studies
Environ. Sci. Technol. 53 (15), 8813 - 8822
full text (doi) - Kallies, R., Kiesel, B., Schmidt, M., Ghanem, N., Zopfi, J., Hackermüller, J., Harms, H., Wick, L.Y., Chatzinotas, A. (2019):
Complete genome sequence of Pseudoalteromonas virus vB_PspP-H6/1 that infects Pseudoalteromonas sp. strain H6
Mar. Genom. 47 , art. 100667
full text (doi) - Lian, S., Wu, L., Nikolausz, M., Lechtenfeld, O.J., Richnow, H.H. (2019):
2H and 13C isotope fractionation analysis of organophosphorus compounds for characterizing transformation reactions in biogas slurry: Potential for anaerobic treatment of contaminated biomass
Water Res. 163 , art. 114882
full text (doi) - Lihl, C., Renpenning, J., Kümmel, S., Gelman, F., Schürner, H.K.V., Daubmeier, M., Heckel, B., Melsbach, A., Bernstein, A., Shouakar-Stash, O., Gehre, M., Elsner, M. (2019):
Toward improved accuracy in chlorine isotope analysis: Synthesis routes for in-house standards and characterization via complementary mass spectrometry methods
Anal. Chem. 91 , 12290 - 12297
full text (doi) - Moreno Osorio, J.H., Benettoni, P., Schmidt, M., Stryhanyuk, H., Schmitt-Jansen, M., Pinto, G., Pollio, A., Frunzo, L., Lens, P.N.L., Richnow, H.H., Esposito, G., Musat, N. (2019):
Investigation of architecture development and phosphate distribution in Chlorella biofilm by complementary microscopy techniques
FEMS Microbiol. Ecol. 95 (4), fiz029
full text (doi) - Ongey, E.L., Santolin, L., Waldburger, S., Adrian, L., Riedel, S.L., Neubauer, P. (2019):
Bioprocess development for lantibiotic ruminococcin-A production in Escherichia coli and kinetic insights into LanM enzymes catalysis
Front. Microbiol. 10 , art. 2133
full text (doi) - Ouyang, W.-Y., Su, J.-Q., Richnow, H.H., Adrian, L. (2019):
Identification of dominant sulfamethoxazole-degraders in pig farm-impacted soil by DNA and protein stable isotope probing
Environ. Int. 126 , 118 - 126
full text (doi) - Said, N., Chatzinotas, A., Schmidt, M. (2019):
Have an ion on it: the life-cycle of Bdellovibrio bacteriovorus viewed by helium-ion microscopy
Adv. Biosyst. 3 (1), art. 1800250
full text (doi) - Spranger, T., van Pinxteren, D., Reemtsma, T., Lechtenfeld, O.J., Herrmann, H. (2019):
2D liquid chromatographic fractionation with ultra-high resolution MS analysis resolves a vast molecular diversity of tropospheric particle organics
Environ. Sci. Technol. 53 (19), 11353 - 11363
full text (doi) - Torgonskaya, M.L., Zyakun, A.M., Trotsenko, Y.A., Laurinavichius, K.S., Kümmel, S., Vuilleumier, S., Richnow, H.H. (2019):
Individual stages of bacterial dichloromethane degradation mapped by stable carbon and chlorine isotope analysis
J. Environ. Sci. 78 , 147 - 160
full text (doi) - Türkowsky, D., Lohmann, P., Mühlenbrink, M., Schubert, T., Adrian, L., Goris, T., Jehmlich, N., von Bergen, M. (2019):
Thermal proteome profiling allows quantitative assessment of interactions between tetrachloroethene reductive dehalogenase and trichloroethene
J. Proteomics 192 , 10 - 17
full text (doi) - Wagner, S., Klöckner, P., Stier, B., Römer, M., Seiwert, B., Reemtsma, T., Schmidt, C. (2019):
Relationship between discharge and river plastic concentrations in a rural and an urban catchment
Environ. Sci. Technol. 53 (17), 10082 - 10091
full text (doi) - Wu, L., Moses, S., Liu, Y., Renpenning, J., Richnow, H.H. (2019):
A concept for studying the transformation reaction of Hexachlorocyclohexanes in food webs using multi-element compound-specific isotope analysis
Anal. Chim. Acta 1064 , 56 - 64
full text (doi)
2018 (23)
- Bader, M., Müller, K., Foerstendorf, H., Schmidt, M., Simmons, K., Swanson, J.S., Reed, D.T., Stumpf, T., Cherkouk, A. (2018):
Comparative analysis of uranium bioassociation with halophilic bacteria and archaea
PLOS One 13 (1), e0190953
full text (doi) - Bader, M., Rossberg, A., Steudtner, R., Drobot, B., Großmann, K., Schmidt, M., Musat, N., Stumpf, T., Ikeda-Ohno, A., Cherkouk, A. (2018):
Impact of Haloarchaea on speciation of uranium—A multispectroscopic approach
Environ. Sci. Technol. 52 (12), 12895 - 12904
full text (doi) - Busche, T., Hillion, M., Loi, V.V., Berg, D., Walther, B., Semmler, T., Strommenger, B., Witte, W., Cuny, C., Mellmann, A., Holmes, M.A., Kalinowski, J., Adrian, L., Bernhardt, J., Antelmann, H. (2018):
Comparative secretome analyses of human and zoonotic Staphylococcus aureus isolates CC8, CC22, and CC398
Mol. Cell. Proteomics 17 (12), 2412 - 2433
full text (doi) - Byrne, J.M., Schmidt, M., Gauger, T., Bryce, C., Kappler, A. (2018):
Imaging organic-mineral aggregates formed by Fe(II)-oxidizing bacteria using helium ion microscopy
Environ. Sci. Technol. Lett. 5 (4), 209 - 213
full text (doi) - Chau, A.T.T., Lee, M., Adrian, L., Manefield, M.J. (2018):
Syntrophic partners enhance growth and respiratory dehalogenation of hexachlorobenzene by Dehalococcoides mccartyi strain CBDB1
Front. Microbiol. 9 , art. 1927
full text (doi) - David, C., Schmid, A., Adrian, L., Wilde, A., Bühler, K. (2018):
Production of 1,2-propanediol in photoautotrophic Synechocystis is linked to glycogen turn-over
Biotechnol. Bioeng. 115 (2), 300 - 311
full text (doi) - Deobald, D., Adrian, L., Schöne, C., Rother, M., Layer, G. (2018):
Identification of a unique Radical SAM methyltransferase required for the sp3-C-methylation of an arginine residue of methyl-coenzyme M reductase
Sci. Rep. 8 , art. 7404
full text (doi) - Ding, C., Enyi, F.O., Adrian, L. (2018):
Anaerobic ammonium oxidation (anammox) with planktonic cells in a redox-stable semicontinuous stirred-tank reactor
Environ. Sci. Technol. 52 (10), 5671 - 5681
full text (doi) - Gadkari, J., Goris, T., Schiffmann, C.L., Rubick, R., Adrian, L., Schubert, T., Diekert, G. (2018):
Reductive tetrachloroethene dehalogenation in the presence of oxygen by Sulfurospirillum multivorans: physiological studies and proteome analysis
FEMS Microbiol. Ecol. 94 (1), fix176
full text (doi) - Hawer, H., Ütkür, K., Arend, M., Mayer, K., Adrian, L., Brinkmann, U., Schaffrath, R. (2018):
Importance of diphthamide modified EF2 for translational accuracy and competitive cell growth in yeast
PLOS One 13 (10), e0205870
full text (doi) - Imber, M., Huyen, N.T.T., Pietrzyk-Brzezinska, A.J., Loi, V.V., Hillion, M., Bernhardt, J., Thärichen, L., Kolšek, K., Saleh, M., Hamilton, C.J., Adrian, L., Gräter, F., Wahl, M.C., Antelmann, H. (2018):
Protein S-bacillithiolation functions in thiol protection and redox regulation of the glyceraldehyde-3-phosphate dehydrogenase Gap in Staphylococcus aureus under hypochlorite stress
Antioxid. Redox Signal. 28 (6), 410 - 430
full text (doi) - Kruse, S., Goris, T., Westermann, M., Adrian, L., Diekert, G. (2018):
Hydrogen production by Sulfurospirillum species enables syntrophic interactions of Epsilonproteobacteria
Nat. Commun. 9 , art. 4872
full text (doi) - McNichol, J., Stryhanyuk, H., Sylva, S.P., Thomas, F., Musat, N., Seewald, J.S., Sievert, S.M. (2018):
Primary productivity below the seafloor at deep-sea hot springs
Proc. Natl. Acad. Sci. U.S.A. 115 (26), 6756 - 6761
full text (doi) - Ongey, E.L., Giessmann, R.T., Fons, M., Rappsilber, J., Adrian, L., Neubauer, P. (2018):
Heterologous biosynthesis, modifications and structural characterization of ruminococcin-A, a lanthipeptide from the gut bacterium Ruminococcus gnavus E1, in Escherichia coli
Front. Microbiol. 9 , art. 1688
full text (doi) - Renpenning, J., Horst, A., Schmidt, M., Gehre, M. (2018):
Online isotope analysis of 37Cl/35Cl universally applied for semi-volatile organic compounds using GC-MC-ICPMS
J. Anal. At. Spectrom. 33 (2), 314 - 321
full text (doi) - Rotaru, A.-E., Calabrese, F., Stryhanyuk, H., Musat, F., Shrestha, P.M., Weber, H.S., Snoeyenbos-West, O.L.O., Hall, P.O.J., Richnow, H.H., Musat, N., Thamdrup, B. (2018):
Conductive particles enable syntrophic acetate oxidation between Geobacter and Methanosarcina from coastal sediments
mBio 9 (3), e00226-18
full text (doi) - Seidel, K., Kühnert, J., Adrian, L. (2018):
The complexome of Dehalococcoides mccartyi reveals its organohalide respiration-complex is modular
Front. Microbiol. 9 , art. 1130
full text (doi) - Shahryari, S., Zahiri, H.S., Haghbeen, K., Adrian, L., Noghabi, K.A. (2018):
High phenol degradation capacity of a newly characterized Acinetobacter sp. SA01: Bacterial cell viability and membrane impairment in respect to the phenol toxicity
Ecotox. Environ. Safe. 164 , 455 - 466
full text (doi) - Sharma, A., Schmidt, M., Kiesel, B., Mahato, N.K., Cralle, L., Singh, Y., Richnow, H.H., Gilbert, J.A., Arnold, W., Lal, R. (2018):
Bacterial and archaeal viruses of Himalayan hot springs at Manikaran modulate host genomes
Front. Microbiol. 9 , art. 3095
full text (doi) - Stryhanyuk, H., Calabrese, F., Kümmel, S., Musat, F., Richnow, H.-H., Musat, N. (2018):
Calculation of single cell assimilation rates from SIP-nanoSIMS-derived isotope ratios: a comprehensive approach
Front. Microbiol. 9 , art. 2342
full text (doi) - Wu, L., Chládková, B., Lechtenfeld, O.J., Lian, S., Schindelka, J., Herrmann, H., Richnow, H.H. (2018):
Characterizing chemical transformation of organophosphorus compounds by 13C and 2H stable isotope analysis
Sci. Total Environ. 615 , 20 - 28
full text (doi) - Zarejousheghani, M., Schrader, S., Möder, M., Schmidt, M., Borsdorf, H. (2018):
A new strategy for accelerated extraction of target compounds using molecularly imprinted polymer particles embedded in a paper-based disk
J. Mol. Recognit. 31 (3), e2629
full text (doi) - Zhang, D., Wu, L., Yao, J., Herrmann, H., Richnow, H.-H. (2018):
Carbon and hydrogen isotope fractionation of phthalate esters during degradation by sulfate and hydroxyl radicals
Chem. Eng. J. 347 , 111 - 118
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2017 (19)
- Bader, M., Müller, K., Foerstendorf, H., Drobot, B., Schmidt, M., Musat, N., Swanson, J.S., Reed, D.T., Stumpf, T., Cherkouk, A. (2017):
Multistage bioassociation of uranium onto an extremely halophilic archaeon revealed by a unique combination of spectroscopic and microscopic techniques
J. Hazard. Mater. 327 , 225 - 232
full text (doi) - Bastida, F., Torres, I.F., Andrés-Abellán, M., Baldrian, P., López-Mondéjar, R., Větrovský, T., Richnow, H.H., Starke, R., Ondoño, S., García, C., López-Serrano, F., Jehmlich, N. (2017):
Differential sensitivity of total and active soil microbial communities to drought and forest management
Glob. Change Biol. 23 (10), 4185 - 4203
full text (doi) - Böhme, S., Baccaro, M., Schmidt, M., Potthoff, A., Stärk, H.-J., Reemtsma, T., Kühnel, D. (2017):
Metal uptake and distribution in the zebrafish (Danio rerio) embryo: differences between nanoparticles and metal ions
Environ. Sci.-Nano 4 (5), 1005 - 1015
full text (doi) - Frauenstein, D., Seidel, K., Adrian, L. (2017):
SandTraps are efficient, scalable, and mild systems for harvesting, washing and concentrating cells
J. Microbiol. Methods 132 , 106 - 111
full text (doi) - Guo, Y., Stärk, H.J., Hause, G., Schmidt, M., Harms, H., Wick, L.Y., Müller, S. (2017):
Heterogenic response of prokaryotes toward silver nanoparticles and ions is facilitated by phenotypes and attachment of silver aggregates to cell surfaces
Cytom. Part A 91 (8), 775 - 784
full text (doi) - Hartwig, S., Dragomirova, N., Kublik, A., Türkowsky, D., von Bergen, M., Lechner, U., Adrian, L., Sawers, R.G. (2017):
A H2-oxidizing, 1,2,3-trichlorobenzene-reducing multienzyme complex isolated from the obligately organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1
Environ. Microbiol. Rep. 9 (5), 618 - 625
full text (doi) - Hillion, M., Imber, M., Pedre, B., Bernhardt, J., Saleh, M., Loi, V.V., Maaß, S., Becher, D., Rosado, L.A., Adrian, L., Weise, C., Hell, R., Wirtz, M., Messens, J., Antelmann, H. (2017):
The glyceraldehyde-3-phosphate dehydrogenase GapDH of Corynebacterium diphtheriae is redox-controlled by protein S-mycothiolation under oxidative stress
Sci. Rep. 7 , art. 5020
full text (doi) - Horst, A., Renpenning, J., Richnow, H.-H., Gehre, M. (2017):
Compound specific stable chlorine isotopic analysis of volatile aliphatic compounds using gas chromatography hyphenated with multiple collector inductively coupled plasma mass spectrometry
Anal. Chem. 89 (17), 9131 - 3138
full text (doi) - Kadisch, M., Julsing, M.K., Schrewe, M., Jehmlich, N., Scheer, B., von Bergen, M., Schmid, A., Bühler, B. (2017):
Maximization of cell viability rather than biocatalyst activity improves whole-cell ω-oxyfunctionalization performance
Biotechnol. Bioeng. 114 (4), 874 - 884
full text (doi) - Kallies, R., Kiesel, B., Schmidt, M., Kacza, J., Ghanem, N., Narr, A., Zopfi, J., Wick, L.Y., Hackermüller, J., Harms, H., Chatzinotas, A. (2017):
Complete genome sequence of Pseudoalteromonas phage vB_PspS-H40/1 (formerly H40/1) that infects Pseudoalteromonas sp. strain H40 and is used as biological tracer in hydrological transport studies
Stand. Genomic Sci. 12 , art. 20
full text (doi) - Laufer, K., Nordhoff, M., Halama, M., Martinez, R.E., Obst, M., Nowak, M., Stryhanyuk, H., Richnow, H.H., Kappler, A. (2017):
Microaerophilic Fe(II)-oxidizing Zetaproteobacteria isolated from low-Fe marine coastal sediments: Physiology and compostition of their twisted stalks
Appl. Environ. Microb. 83 (8), e03118-16
full text (doi) - Morling, K., Raeke, J., Kamjunke, N., Reemtsma, T., Tittel, J. (2017):
Tracing aquatic priming effect during microbial decomposition of terrestrial dissolved organic carbon in chemostat experiments
Microb. Ecol. 74 (3), 534 - 549
full text (doi) - Mortan, S.H., Martín-González, L., Vicent, T., Caminal, G., Nijenhuis, I., Adrian, L., Marco-Urrea, E. (2017):
Detoxification of 1,1,2-trichloroethane to ethene in a bioreactor co-culture of Dehalogenimonas and Dehalococcoides mccartyi strains
J. Hazard. Mater. 331 , 218 - 225
full text (doi) - Raeke, J., Lechtenfeld, O.J., Seiwert, B., Meier, T., Riemenschneider, C., Reemtsma, T. (2017):
Photochemically induced bound residue formation of carbamazepine with dissolved organic matter
Environ. Sci. Technol. 51 (10), 5523 - 5530
full text (doi) - Raeke, J., Lechtenfeld, O.J., Tittel, J., Oosterwoud, M.R., Bornmann, K., Reemtsma, T. (2017):
Linking the mobilization of dissolved organic matter in catchments and its removal in drinking water treatment to its molecular characteristics
Water Res. 113 , 149 - 159
full text (doi) - Taubert, M., Grob, C., Howar, A.M., Burns, O.J., Pratscher, J., Jehmlich, N., von Bergen, M., Richnow, H.H., Chen, Y., Murrell, J.C. (2017):
Methylamine as a nitrogen source for microorganisms from a coastal marine environment
Environ. Microbiol. 19 (6), 2246 - 2257
full text (doi) - Warnke, M., Jacoby, C., Jung, T., Agne, M., Mergelsberg, M., Starke, R., Jehmlich, N., von Bergen, M., Richnow, H.-H., Brüls, T., Boll, M. (2017):
A patchwork pathway for oxygenase-independent degradation of side chain containing steroids
Environ. Microbiol. 19 (11), 4684 - 4699
full text (doi) - Worrich, A., Stryhanyuk, H., Musat, N., König, S., Banitz, T., Centler, F., Frank, K., Thullner, M., Harms, H., Richnow, H.-H., Miltner, A., Kästner, M., Wick, L.Y. (2017):
Mycelium-mediated transfer of water and nutrients stimulates bacterial activity in dry and oligotrophic environments
Nat. Commun. 8 , art. 15472
full text (doi) - Wu, L., Kümmel, S., Richnow, H.H. (2017):
Validation of GC–IRMS techniques for δ13C and δ2H CSIA of organophosphorus compounds and their potential for studying the mode of hydrolysis in the environment
Anal. Bioanal. Chem. 409 (10), 2581 - 2590
full text (doi)
2016 (16)
- Bastida, F., Jehmlich, N., Lima, K., Morris, B.E.L., Richnow, H.H., Hernández, T., von Bergen, M., García, C. (2016):
The ecological and physiological responses of the microbial community from a semiarid soil to hydrocarbon contamination and its bioremediation using compost amendment
J. Proteomics 135 , 162 - 169
full text (doi) - Bastida, F., Torres, I.F., Moreno, J.L., Baldrian, P., Ondoño, S., Ruiz-Navarro, A., Hernández, T., Richnow, H.H., Starke, R., García, C., Jehmlich, N. (2016):
The active microbial diversity drives ecosystem multifunctionality and is physiologically related to carbon availability in Mediterranean semi-arid soils
Mol. Ecol. 25 (18), 4660 - 4673
full text (doi) - Goris, T., Schiffmann, C.L., Gadkari, J., Adrian, L., von Bergen, M., Diekert, G., Jehmlich, N. (2016):
Proteomic data set of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates
Data Brief 8 , 637 - 642
full text (doi) - Krasper, L., Lilie, H., Kublik, A., Adrian, L., Golbik, R., Lechner, U. (2016):
The MarR-type regulator Rdh2R regulates rdh gene transcription in Dehalococcoides mccartyi strain CBDB1
J. Bacteriol. 198 (23), 3130 - 3141
full text (doi) - Kublik, A., Deobald, D., Hartwig, S., Schiffmann, C.L., Andrades, A., von Bergen, M., Sawers, R.G., Adrian, L. (2016):
Identification of a multi-protein reductive dehalogenase complex in Dehalococcoides mccartyi strain CBDB1 suggests a protein-dependent respiratory electron transport chain obviating quinone involvement
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Thermophilic archaea activate butane via alkyl-coenzyme M formation
Nature 539 (7629), 396 - 401
full text (doi) - Lünsmann, V., Kappelmeyer, U., Benndorf, R., Martínez-Lavanchy, P.M., Taubert, A., Adrian, L., Duarte, M., Pieper, D.H., von Bergen, M., Müller, J.A., Heipieper, H.J., Jehmlich, N. (2016):
In situ protein-SIP highlights Burkholderiaceae as key players degrading toluene by para ring hydroxylation in a constructed wetland model
Environ. Microbiol. 18 (4), 1176 - 1186
full text (doi) - Lünsmann, V., Kappelmeyer, U., Taubert, A., Nijenhuis, I., von Bergen, M., Heipieper, H.J., Müller, J.A., Jehmlich, N. (2016):
Aerobic toluene degraders in the rhizosphere of a constructed wetland model show diurnal polyhydroxyalkanoate metabolism
Appl. Environ. Microb. 82 (14), 4126 - 4132
full text (doi) - Raeke, J., Lechtenfeld, O.J., Wagner, M., Herzsprung, P., Reemtsma, T. (2016):
Selectivity of solid phase extraction of freshwater dissolved organic matter and its effect on ultrahigh resolution mass spectra
Environ. Sci.-Process Impacts 18 (7), 918 - 927
full text (doi) - Riabtseva, A., Mitina, N., Grytsyna, I., Boiko, N., Garamus, V.M., Stryhanyuk, H., Stoika, R., Zaichenko, A. (2016):
Functional micelles formed by branched polymeric surfactants: synthesis, characteristics, and application as nanoreactors and carriers
Eur. Polym. J. 75 , 406 - 422
full text (doi) - Saatz, J., Stryhanyuk, H., Vetterlein, D., Musat, N., Otto, M., Reemtsma, T., Richnow, H.H., Daus, B. (2016):
Location and speciation of gadolinium and yttrium in roots of Zea mays by LA-ICP-MS and ToF-SIMS
Environ. Pollut. 216 , 245 - 252
full text (doi) - Schaubeck, M., Clavel, T., Calasan, J., Lagkouvardos, I., Haange, S.B., Jehmlich, N., Basic, M., Dupont, A., Hornef, M., von Bergen, M., Bleich, A., Haller, D. (2016):
Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence
Gut 65 , 225 - 237
full text (doi) - Schiffmann, C.L., Otto, W., Hansen, R., Nielsen, P.H., Adrian, L., Seifert, J., von Bergen, M., Jehmlich, N. (2016):
Proteomic dataset of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor
Data Brief 7 , 253 - 256
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Pulsed 13C2-acetate protein-SIP unveils Epsilonproteobacteria as dominant acetate utilizers in a sulfate-reducing microbial community mineralizing benzene
Microb. Ecol. 71 (4), 901 - 911
full text (doi) - Tiedt, O., Mergelsberg, M., Boll, K., Müller, M., Adrian, L., Jehmlich, N., von Bergen, M., Boll, M. (2016):
ATP-dependent C–F bond cleavage allows the complete degradation of 4-fluoroaromatics without oxygen
mBio 7 (4), e00990-16
full text (doi) - Weidauer, C., Davis, C., Raeke, J., Seiwert, B., Reemtsma, T. (2016):
Sunlight photolysis of benzotriazoles – Identification of transformation products and pathways
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full text (doi)
2015 (10)
- Daims, H., Lebedeva, E.V., Pjevac, P., Han, P., Herbold, C., Albertsen, M., Jehmlich, N., Palatinszky, M., Vierheilig, J., Bulaev, A., Kirkegaard, R.H., von Bergen, M., Rattei, T., Bendinger, B., Nielsen, P.H., Wagner, M. (2015):
Complete nitrification by Nitrospira bacteria
Nature 528 (7583), 504 - 509
full text (doi) - Goris, T., Schiffmann, C.L., Gadkari, J., Schubert, T., Seifert, J., Jehmlich, N., von Bergen, M., Diekert, G. (2015):
Proteomics of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates
Sci. Rep. 5 , art. 13794
full text (doi) - Grob, C., Taubert, M., Howat, A.M., Burns, O.J., Dixon, J.L., Richnow, H.H., Jehmlich, N., von Bergen, M., Chen, Y., Murrell, J.C. (2015):
Combining metagenomics with metaproteomics and stable isotope probing reveals metabolic pathways used by a naturally occurring marine methylotroph
Environ. Microbiol. 17 (10), 4007 - 4018
full text (doi) - Hartwig, S., Thomas, C., Krumova, N., Quitzke, V., Türkowsky, D., Jehmlich, N., Adrian, L., Sawers, R.G. (2015):
Heterologous complementation studies in Escherichia coli with the Hyp accessory protein machinery from Chloroflexi provide insight into [NiFe]-hydrogenase large subunit recognition by the HypC protein family
Microbiology-(UK) 161 (11), 2204 - 2219
full text (doi) - Martín-González, L., Hatijah Mortan, S., Rosell, M., Parladé, E., Martínez-Alonso, M., Gaju, N., Caminal, G., Adrian, L., Marco-Urrea, E. (2015):
Stable carbon isotope fractionation during 1,2-dichloropropane-to-propene transformation by an enrichment culture containing Dehalogenimonas strains and a dcpA gene
Environ. Sci. Technol. 49 (14), 8666 - 8674
full text (doi) - Palatinszky, M., Herbold, C., Jehmlich, N., Pogoda, M., Han, P., von Bergen, M., Lagkouvardos, I., Karst, S.M., Galushko, A., Koch, H., Berry, D., Daims, H., Wagner, M. (2015):
Cyanate as an energy source for nitrifiers
Nature 524 (7563), 105 - 108
full text (doi) - Pöritz, M., Schiffmann, C.L., Hause, G., Heinemann, U., Seifert, J., Jehmlich, N., von Bergen, M., Nijenhuis, I., Lechner, U. (2015):
Dehalococcoides mccartyi strain DCMB5 respires a broad spectrum of chlorinated aromatic compounds
Appl. Environ. Microb. 81 (2), 587 - 596
full text (doi) - Schkolnik, G., Schmidt, M., Mazza, M.G., Harnisch, F., Musat, N. (2015):
In situ analysis of a silver nanoparticle-precipitating Shewanella biofilm by surface enhanced confocal Raman microscopy
PLOS One 10 (12), e0145871
full text (doi) - Seyhan, D., Jehmlich, N., von Bergen, M., Fersch, J., Rother, M. (2015):
Selenocysteine-independent suppression of UGA codons in the archaeon Methanococcus maripaludis
Biochim. Biophys. Acta-Gen. Subj. 1850 , 2385 - 2392
full text (doi) - Yang, C., Kublik, A., Weidauer, C., Seiwert, B., Adrian, L. (2015):
Reductive dehalogenation of oligocyclic phenolic bromoaromatics by Dehalococcoides mccartyi strain CBDB1
Environ. Sci. Technol. 49 (14), 8497– - 8505
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2014 (2)
- Musat, N., Stryhanyuk, H., Bombach, P., Adrian, L., Audinot, J.-N., Richnow, H.H. (2014):
The effect of FISH and CARD-FISH on the isotopic composition of 13C- and 15N-labeled Pseudomonas putida cells measured by nanoSIMS
Syst. Appl. Microbiol. 37 (4), 267 - 276
full text (doi) - Schiffmann, C.L., Jehmlich, N., Otto, W., Hansen, R., Nielsen, P.H., Adrian, L., Seifert, J., von Bergen-Tomm, M. (2014):
Proteome profile and proteogenomics of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor
J. Proteomics 98 , 59 - 64
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Bandara, Dr. Chaturanga, Bandara, Chaturanga
Davoudpour, Dr. Yalda
Musat, Dr. Niculina, Musat, Niculina
Schwab, Dr. Laura, Schwab, Laura