2024 (2)

• Vučić, V., Harms, H., Müller, S. (2024):
  Biological recovery of phosphorus (BioP-Rec) from wastewater streams using brewer’s yeast on pilot-scale
  Eng. Life Sci. 24 (2), e2300208 10.1002/elsc.202300208
• Ye, Y., Ghrayeb, M., Miercke, S., Arif, S., Müller, S., Mascher, T., Chai, L., Zaburdaev, V. (2024):
  Residual cells and nutrient availability guide wound healing in bacterial biofilms
  Soft Matter 20 (5), 1047 - 1060 10.1039/D3SM01032E

2023 (5)

• Abdulkadir, N., Saraiva, J.P., Schattenberg, F., Brizola Toscan, R., Borim Correa, F., Harms, H., Müller, S., Nunes da Rocha, U. (2023):
  Combining flow cytometry and metagenomics improves recovery of metagenome-assembled genomes in a cell culture from activated sludge
  Microorganisms 11 (1), art. 175 10.3390/microorganisms11010175
• Çelik, G., Stolte, S., Müller, S., Schattenberg, F., Markiewicz, M. (2023):
  Environmental persistence assessment of heterocyclic polyaromatic hydrocarbons – Ultimate and primary biodegradability using adapted and non-adapted microbial communities
  J. Hazard. Mater. 460 , art. 132370 10.1016/j.jhazmat.2023.132370
• Guo, Y., Rosa, L.F.M., Shan, Y., Harnisch, F., Müller, S. (2023):
  Labor division of electroactive and carbon degrading microorganisms in bioelectrochemical laminar flow reactors
  J. Environ. Chem. Eng. 11 (5), art. 111074 10.1016/j.jece.2023.111074
• Li, S., Müller, S. (2023):
  Ecological forces dictate microbial community assembly processes in bioreactor systems
  Curr. Opin. Biotechnol. 81 , art. 102917 10.1016/j.copbio.2023.102917
• López-Gálvez, J., Schiessl, K., Besmer, M.D., Bruckmann, C., Harms, H., Müller, S. (2023):
  Development of an automated online flow cytometry method to quantify cell density and fingerprint bacterial communities
  Cells 12 (12), art. 1559 10.3390/cells12121559

2022 (6)

• Bruckmann, C., Müller, S., Höner zu Siederdissen, C. (2022):
  Automatic, fast, hierarchical, and non-overlapping gating of flow cytometric data with flowEMMi v2
  Comp. Struct. Biotechnol. J. 20 , 6473 - 6489 10.1016/j.csbj.2022.11.033
• Jurburg, S.D., Eisenhauer, N., Buscot, F., Chatzinotas, A., Chaudhari, N.M., Heintz-Buschart, A., Kallies, R., Küsel, K., Litchman, E., Macdonald, C.A., Müller, S., Reuben, R.C., Nunes da Rocha, U., Panagiotou, G., Rillig, M.C., Singh, B.K. (2022):
  Potential of microbiome-based solutions for agrifood systems
  Nat. Food 3 (8), 557 - 560 10.1038/s43016-022-00576-x
• Li, S., Abdulkadir, N., Schattenberg, F., Nunes da Rocha, U., Grimm, V., Müller, S., Liu, Z. (2022):
  Stabilizing microbial communities by looped mass transfer
  Proc. Natl. Acad. Sci. U.S.A. 119 (17), e2117814119 10.1073/pnas.2117814119
• Li, S., Liu, Z., Süring, C., Müller, S., Zeng, P. (2022):
  The impact of the antibiotic fosfomycin on wastewater communities measured by flow cytometry
  Front. Microbiol. 12 , art. 737831 10.3389/fmicb.2021.737831
• Li, S., Müller, S. (2022):
  Stabile Langzeitkultivierung mikrobieller Gemeinschaften im loop-design
  Biospektrum 28 (7), 705 - 708 10.1007/s12268-022-1846-y
• Qin, W., Stärk, H.-J., Müller, S., Reemtsma, T. (2022):
  Exploring the extent of phosphorus and heavy metal uptake by single cells of Saccharomyces cerevisiae and their effects on intrinsic elements by SC-ICP-TOF-MS
  Front. Microbiol. 13 , art. 870931 10.3389/fmicb.2022.870931

2021 (5)

• Cohen, Y., Pasternak, Z., Müller, S., Hübschmann, T., Schattenberg, F., Sivakala, K.K., Abed-Rabbo, A., Chatzinotas, A., Jurkevitch, E. (2021):
  Community and single cell analyses reveal complex predatory interactions between bacteria in high diversity systems
  Nat. Commun. 12 , art. 5481 10.1038/s41467-021-25824-9
• Heyse, J., Schattenberg, F., Rubbens, P., Müller, S., Waegeman, W., Boon, N., Props, R. (2021):
  Predicting the presence and abundance of bacterial taxa in environmental communities through flow cytometric fingerprinting
  mSystems 6 (5), e00551-21 10.1128/mSystems.00551-21
• Qin, W., Stärk, H.-J., Müller, S., Reemtsma, T., Wagner, S. (2021):
  Determination of elemental distribution and evaluation of elemental concentration in single Saccharomyces cerevisiae cells using single cell-inductively coupled plasma mass spectrometry
  Metallomics 13 (6), mfab032 10.1093/mtomcs/mfab032
• Vučić, V., Müller, S. (2021):
  New developments in biological phosphorus accessibility and recovery approaches from soil and waste streams
  Eng. Life Sci. 21 (3-4), 77 - 86 10.1002/elsc.202000076
• Vučić, V., Süring, C., Harms, H., Müller, S., Günther, S. (2021):
  A framework for P-cycle assessment in wastewater treatment plants
  Sci. Total Environ. 760 , art. 143392 10.1016/j.scitotenv.2020.143392

2020 (8)

• Alvarez Esquivel, D.Y., Guo, Y., Brown, R.K., Müller, S., Schröder, U., Harnisch, F. (2020):
  Investigating community dynamics and performance during microbial electrochemical degradation of whey
  ChemElectroChem 7 (4), 989 - 997 10.1002/celc.201902109
• Cichocki, N., Hübschmann, T., Schattenberg, F., Kerckhof, F.M., Overmann, J., Müller, S. (2020):
  Bacterial mock communities as standards for reproducible cytometric microbiome analysis
  Nat. Protoc. 15 , 2788 - 2812 10.1038/s41596-020-0362-0
• Guo, Y., Rosa, L.F.M., Müller, S., Harnisch, F. (2020):
  Monitoring stratification of anode biofilms in bioelectrochemical laminar flow reactors using flow cytometry
  Environ. Sci. Ecotechnol. 4 , art. 10062 10.1016/j.ese.2020.100062
• Haange, S.-B., Jehmlich, N., Krügel, U., Hintschich, C., Wehrmann, D., Hankir, M., Seyfried, F., Froment, J., Hübschmann, T., Müller, S., Wissenbach, D.K., Kang, K.H., Buettner, C., Panagiotou, G., Noll, M., Rolle-Kampczyk, U., Fenske, W., von Bergen, M. (2020):
  Gastric bypass surgery in a rat model alters the community structure and functional composition of the intestinal microbiota independently of weight loss
  Microbiome 8 , art. 13 10.1186/s40168-020-0788-1
• Krause, J.L., Schaepe, S.S., Fritz-Wallace, K., Engelmann, B., Rolle-Kampczyk, U., Kleinsteuber, S., Schattenberg, F., Liu, Z., Müller, S., Jehmlich, N., von Bergen, M., Herberth, G. (2020):
  Following the community development of SIHUMIx – a new intestinal in vitro model for bioreactor use
  Gut Microbes 11 (4), 1116 - 1129 10.1080/19490976.2019.1702431
• Krause, J.L., Schäpe, S.S., Schattenberg, F., Müller, S., Ackermann, G., Rolle-Kampczyk, U.E., Jehmlich, N., Pierzchalski, A., von Bergen, M., Herberth, G. (2020):
  The activation of mucosal-associated invariant T (MAIT) cells is affected by microbial diversity and riboflavin utilization in vitro
  Front. Microbiol. 11 , art. 755 10.3389/fmicb.2020.00755
• Liu, Z., Müller, S. (2020):
  Bacterial community diversity dynamics highlight degrees of nestedness and turnover patterns
  Cytom. Part A 97 (7), 742 - 748 10.1002/cyto.a.23965
• Müller, S., Chang, H.-D. (2020):
  Microorganisms and their activities within microbial communities
  Cytom. Part A 97 (7), 681 - 682 10.1002/cyto.a.24175

2019 (10)

• Calabrese, F., Voloshynovska, I., Musat, F., Thullner, M., Schlömann, M., Richnow, H.H., Lambrecht, J., Müller, S., Wick, L.Y., Musat, N., Stryhanyuk, H. (2019):
  Quantitation and comparison of phenotypic heterogeneity among single cells of monoclonal microbial populations
  Front. Microbiol. 10 , art. 2814 10.3389/fmicb.2019.02814
• Cossarizza, A., Chang, H.-D., Radbruch, A., Acs, A., Adam, D., Adam-Klages, S., Müller, S., Agace, W.W., et al. (2019):
  Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition)
  Eur. J. Immunol. 49 (10), 1457 - 1973 10.1002/eji.201970107
• Czechowska, K., Lannigan, J., Wang, L., Arcidiacono, J., Ashhurst, T.M., Barnard, R.M., Bauer, S., Bispo, C., Bonilla, D.L., Brinkman, R.R., Cabanski, M., Chang, H.-D., Chakrabarti, L., Chojnowski, G., Cotleur, B., Degheidy, H., Dela Cruz, G.V., Eck, S., Elliott, J., Errington, R., Filby, A., Gagnon, D., Gardner, R., Green, C., Gregory, M., Groves, C.J., Hall, C., Hammes, F., Hedrick, M., Hoffman, R., Icha, J., Ivaska, J., Jenner, D.C., Jones, D., Kerckhof, F.M., Kukat, C., Lanham, D., Leavesley, S., Lee, M., Lin‐Gibson, S., Litwin, V., Liu, Y., Molloy, J., Moore, J.S., Müller, S., Nedbal, J., Niesner, R., Nitta, N., Ohlsson‐Wilhelm, B., Paul, N.E., Perfetto, S., Portat, Z., Props, R., Radtke, S., Rayanki, R., Rieger, A., Rogers, S., Rubbens, P., Salomon, R., Schiemann, M., Sharpe, J., Sonder, S.U., Stewart, J.J., Sun, Y., Ulrich, H., Van Isterdael, G., Vitaliti, A., van Vreden, C., Weber, M., Zimmermann, J., Vacca, G., Wallace, P., Tárnok, A. (2019):
  Cyt‐Geist: Current and Future Challenges in Cytometry: Reports of the CYTO 2018 Conference Workshops
  Cytom. Part A 95 (6), 598 - 644 10.1002/cyto.a.23777
• Donnenberg, V.S., Müller, S., Houston, J.P., Holden, E. (2019):
  Cytometry score: 23 to 4
  Cytom. Part A 95 (3), 259 - 260 10.1002/cyto.a.23713
• Engel, C., Schattenberg, F., Dohnt, K., Schröder, U., Müller, S., Krull, R. (2019):
  Long-term behavior of defined mixed cultures of Geobacter sulfurreducens and Shewanella oneidensis in bioelectrochemical systems
  Front. Bioeng. Biotechnol. 7 , art. 60 10.3389/fbioe.2019.00060
• Guo, Y., Cichocki, N., Schattenberg, F., Geffers, R., Harms, H., Müller, S. (2019):
  AgNPs change microbial community structures of wastewater
  Front. Microbiol. 9 , art. 3211 10.3389/fmicb.2018.03211
• Lambrecht, J., Cichocki, N., Schattenberg, F., Kleinsteuber, S., Harms, H., Müller, S., Sträuber, H. (2019):
  Key sub‑community dynamics of medium‑chain carboxylate production
  Microb. Cell. Fact. 18 , art. 92 10.1186/s12934-019-1143-8
• Liu, Z., Cichocki, N., Hübschmann, T., Süring, C., Ofiţeru, I.D., Sloan, W.T., Grimm, V., Müller, S. (2019):
  Neutral mechanisms and niche differentiation in steady-state insular microbial communities revealed by single cell analysis
  Environ. Microbiol. 21 (1), 164 - 181 10.1111/1462-2920.14437
• Ludwig, J., Höner zu Siederdissen, C., Liu, Z., Stadler, P.F., Müller, S. (2019):
  flowEMMi: an automated model-based clustering tool for microbial cytometric data
  BMC Bioinformatics 20 , art. 643 10.1186/s12859-019-3152-3
• Schäpe, S.S., Krause, J.L., Engelmann, B., Fritz-Wallace, K., Schattenberg, F., Liu, Z., Müller, S., Jehmlich, N., Rolle-Kampczyk, U., Herberth, G., von Bergen, M. (2019):
  The simplified human intestinal microbiota (SIHUMIx) shows high structural and functional resistance against changing transit times in in vitro bioreactors
  Microorganisms 7 (12), art. 641 10.3390/microorganisms7120641

2018 (7)

• Günther, S., Becker, D., Hübschmann, T., Reinert, S., Kleinsteuber, S., Müller, S., Wilhelm, C. (2018):
  Long-term biogas production from glycolate by diverse and highly dynamic communities
  Microorganisms 6 (4), art. 130 10.3390/microorganisms6040103
• Günther, S., Grunert, M., Müller, S. (2018):
  Overview of recent advances in phosphorus recovery for fertilizer production
  Eng. Life Sci. 18 (7), 434 - 439 10.1002/elsc.201700171
• Koch, C., Müller, S. (2018):
  Personalized microbiome dynamics – Cytometric fingerprints for routine diagnostics
  Mol. Asp. Med. 59 , 123 - 134 10.1016/j.mam.2017.06.005
• Lambrecht, J., Schattenberg, F., Harms, H., Müller, S. (2018):
  Characterizing microbiome dynamics – flow cytometry based workflows from pure cultures to natural communities
  J. Vis. Exp. 2018 (137), e58033 10.3791/58033
• Liu, Z., Cichocki, N., Bonk, F., Günther, S., Schattenberg, F., Harms, H., Centler, F., Müller, S. (2018):
  Ecological stability properties of microbial communities assessed by flow cytometry
  mSphere 3 (1), e00564-17 10.1128/mSphere.00564-17
• van Gelder, S., Röhrig, N., Schattenberg, F., Cichocki, N., Schumann, J., Schmalz, G., Haak, R., Ziebolz, D., Müller, S. (2018):
  A cytometric approach to follow variation and dynamics of the salivary microbiota
  Methods 134–135 , 67 - 79 10.1016/j.ymeth.2017.08.009
• Zimmermann, J., Durek, P., Kühl, A.A., Schattenberg, F., Maschmeyer, P., Siracusa, F., Lehmann, K., Westendorf, K., Weber, M., Riedel, R., Müller, S., Radbruch, A., Chang, H.-D. (2018):
  The intestinal microbiota determines the colitis-inducing potential of T-bet-deficient Th cells in mice
  Eur. J. Immunol. 48 (1), 161 - 167 10.1002/eji.201747100

2017 (4)

• Cossarizza, A., Chang, H.-D., Radbruch, A., Akdis, M., Andrä, I., Annunziato, F., Bacher, P., Barnaba, V., Battistini, L., Bauer, W.M., Baumgart, S., Becher, B., Beisker, W., Berek, C., Blanco, A., Borsellino, G., Boulais, P.E., Brinkman, R.R., Büscher, M., Busch, D.H., Bushnell, T.P., Cao, X., Cavani, A., Chattopadhyay, P.K., Cheng, Q., Chow, S., Clerici, M., Cooke, A., Cosma, A., Cosmi, L., Cumano, A., Dang, V.D., Davies, D., De Biasi, S., Del Zotto, G., Müller, S., Müller, W., et al. (2017):
  Guidelines for the use of flow cytometry and cell sorting in immunological studies
  Eur. J. Immunol. 47 (10), 1584 - 1797 10.1002/eji.201646632
• Guo, Y., Baumgart, S., Stärk, H.-J., Harms, H., Müller, S. (2017):
  Mass cytometry for detection of silver at the bacterial single cell level
  Front. Microbiol. 8 , art. 1326 10.3389/fmicb.2017.01326
• Guo, Y., Stärk, H.J., Hause, G., Schmidt, M., Harms, H., Wick, L.Y., Müller, S. (2017):
  Heterogenic response of prokaryotes toward silver nanoparticles and ions is facilitated by phenotypes and attachment of silver aggregates to cell surfaces
  Cytom. Part A 91 (8), 775 - 784 10.1002/cyto.a.23055
• Lambrecht, J., Cichocki, N., Hübschmann, T., Koch, C., Harms, H., Müller, S. (2017):
  Flow cytometric quantification, sorting and sequencing of methanogenic archaea based on F₄₂₀ autofluorescence
  Microb. Cell. Fact. 16 , art. 180 10.1186/s12934-017-0793-7

2016 (4)

• Günther, S., Faust, K., Schumann, J., Harms, H., Raes, J., Müller, S. (2016):
  Species-sorting and mass-transfer paradigms control managed natural metacommunities
  Environ. Microbiol. 18 (12), 4862 - 4877 10.1111/1462-2920.13402
• Jahn, M., Vorpahl, C., Hübschmann, T., Harms, H., Müller, S. (2016):
  Copy number variability of expression plasmids determined by cell sorting and Droplet Digital PCR
  Microb. Cell. Fact. 15 , art. 211 10.1186/s12934-016-0610-8
• Lieder, S., Jahn, M., Koepff, J., Müller, S., Takors, R. (2016):
  Environmental stress speeds up DNA replication in Pseudomonas putida in chemostat cultivations
  Biotechnol. J. 11 (1), 155 - 163 10.1002/biot.201500059
• Zimmermann, J., Hübschmann, T., Schattenberg, F., Schumann, J., Durek, P., Riedel, R., Friedrich, M., Glauben, R., Siegmund, B., Radbruch, A., Müller, S., Chang, H.-D. (2016):
  High-resolution microbiota flow cytometry reveals dynamic colitis-associated changes in fecal bacterial composition
  Eur. J. Immunol. 46 (5), 1300 - 1303 10.1002/eji.201646297

2015 (9)

• Günther, S., Müller, S. (2015):
  Facilitated gate setting by sequential dot plot scanning
  Cytom. Part A 87 (7), 661 - 664 10.1002/cyto.a.22656
• Jahn, M., Günther, S., Müller, S. (2015):
  Non-random distribution of macromolecules as driving forces for phenotypic variation
  Curr. Opin. Microbiol. 25 , 49 - 55 10.1016/j.mib.2015.04.005
• King, N., Müller, S. (2015):
  Environmental microbiology: Revisiting the physiology of microorganisms on the single cell scale. Editorial overview
  Curr. Opin. Microbiol. 25 , v - vi 10.1016/j.mib.2015.06.006
• Koch, C., Kuchenbuch, A., Kretzschmar, J., Wedwitschka, H., Liebetrau, J., Müller, S., Harnisch, F. (2015):
  Coupling electric energy and biogas production in anaerobic digesters – impacts on the microbiome
  RSC Advances 5 (40), 31329 - 31340 10.1039/C5RA03496E
• Lindmeyer, M., Jahn, M., Vorpahl, C., Müller, S., Schmid, A., Bühler, B. (2015):
  Variability in subpopulation formation propagates into biocatalytic variability of engineered Pseudomonas putida strains
  Front. Microbiol. 6 , art. 1042 10.3389/fmicb.2015.01042
• Melzer, S., Winter, G., Jäger, K., Hübschmann, T., Hause, G., Syrowatka, F., Harms, H., Tárnok, A., Müller, S. (2015):
  Cytometric patterns reveal growth states of Shewanella putrefaciens
  Microb. Biotechnol. 8 (3), 379 - 391 10.1111/1751-7915.12154
• Müller, S., Schleinitz, K. (2015):
  Flow cytometry and microbial community fingerprinting
  In: Wilkinson, M.G. (ed.)
  Flow cytometry in microbiology: Technology and applications
  Caister Academic Press, Norfolk, p. 77 - 89
• Pous, N., Koch, C., Vilà-Rovira, A., Balaguer, M.D., Colprim, J., Mühlenberg, J., Müller, S., Harnisch, F., Puig, S. (2015):
  Monitoring and engineering reactor microbiomes of denitrifying bioelectrochemical systems
  RSC Advances 5 (84), 68326 - 68333 10.1039/c5ra12113b
• Zimmermann, M., Escrig, S., Hübschmann, T., Kirf, M.K., Brand, A., Inglis, R.F., Musat, N., Müller, S., Meibom, A., Ackermann, M., Schreiber, F. (2015):
  Phenotypic heterogeneity in metabolic traits among single cells of a rare bacterial species in its natural environment quantified with a combination of flow cell sorting and NanoSIMS
  Front. Microbiol. 6 , art. 243 10.3389/fmicb.2015.00243

2014 (9)

• Bühligen, F., Lindner, P., Fetzer, I., Stahl, F., Scheper, T., Harms, H., Müller, S. (2014):
  Analysis of aging in lager brewing yeast during serial repitching
  J. Biotechnol. 187 , 60 - 70 10.1016/j.jbiotec.2014.07.002
• Jahn, M., Vorpahl, C., Türkowsky, D., Lindmeyer, M., Bühler, B., Harms, H., Müller, S. (2014):
  Accurate determination of plasmid copy number of flow-sorted cells using droplet digital PCR
  Anal. Chem. 86 (12), 5969 - 5976 10.1021/ac501118v
• Jahn, M., Vorpahl, C., Türkowsky, D., Lindmeyer, M., Bühler, B., Harms, H., Müller, S. (2014):
  Population heterogeneity in Pseudomonas putida analyzed on the single cell level using proteomics and digital PCR
  New Biotech. 31 (Suppl.), S58 - S59 10.1016/j.nbt.2014.05.1746
• Koch, C., Harms, H., Müller, S. (2014):
  Dynamics in the microbial cytome — single cell analytics in natural systems
  Curr. Opin. Biotechnol. 27 , 134 - 141 10.1016/j.copbio.2014.01.011
• Koch, C., Harnisch, F., Schröder, U., Müller, S. (2014):
  Cytometric fingerprints: evaluation of new tools for analyzing microbial community dynamics
  Front. Microbiol. 5 , art. 273 10.3389/fmicb.2014.00273
• Koch, C., Müller, S., Harms, H., Harnisch, F. (2014):
  Microbiomes in bioenergy production: From analysis to management
  Curr. Opin. Biotechnol. 27 , 65 - 72 10.1016/j.copbio.2013.11.006
• Lieder, S., Jahn, M., Seifert, J., von Bergen, M., Müller, S., Takors, R. (2014):
  Subpopulation-proteomics reveal growth rate, but not cell cycling, as a major impact on protein composition in Pseudomonas putida KT2440
  AMB Express 4 , art. 71 10.1186/s13568-014-0071-6
• Schumann, J., Koch, C., Günther, S., Fetzer, I., Müller, S. (2014):
  flowCHIC: Analyze flow cytometric data using histogram information
  R package version 1.0.0
  http://www.bioconductor.org/packages/release/bioc/html/flowCHIC.html
  October 2014: 5 downloads (distinct IPs: ~500)
• Schumann, J., Koch, C., Günther, S., Fetzer, I., Müller, S. (2014):
  flowCyBar: Analyze flow cytometric data using gate information
  R package version 1.2.0
  http://www.bioconductor.org/packages/release/bioc/html/flowCyBar.html
  October 2014: 1491 downloads (distinct IPs: December 2014: ~2000)

2013 (13)

• Bühligen, F., Rüdinger, P., Fetzer, I., Stahl, F., Scheper, T., Harms, H., Müller, S. (2013):
  Sustainability of industrial yeast serial repitching practice studied by gene expression and correlation analysis
  J. Biotechnol. 168 (4), 718 - 728 10.1016/j.jbiotec.2013.09.008
• Jahn, M., Seifert, J., Hübschmann, T., von Bergen, M., Harms, H., Müller, S. (2013):
  Comparison of preservation methods for bacterial cells in cytomics and proteomics
  Journal of Integrated OMICS 3 (1), 25 - 33 10.5584/jiomics.v3i1.115
• Jahn, M., Seifert, J., von Bergen, M., Schmid, A., Bühler, B., Müller, S. (2013):
  Subpopulation-proteomics in prokaryotic populations
  Curr. Opin. Biotechnol. 24 (1), 79 - 87 10.1016/j.copbio.2012.10.017
• Koch, C., Brumme, B., Müller, S. (2013):
  Mikrobielle Gemeinschaften im Visier der Durchflusszytometrie : Aktivitätsanalyse per Barcode
  Biospektrum 19 (4), 396 - 400 10.1007/s12268-013-0329-6
• Koch, C., Fetzer, I., Harms, H., Müller, S. (2013):
  CHIC—an automated approach for the detection of dynamic variations in complex microbial communities
  Cytom. Part A 83 (6), 561 - 567 10.1002/cyto.a.22286
• Koch, C., Fetzer, I., Schmidt, T., Harms, H., Müller, S. (2013):
  Monitoring functions in managed microbial systems by cytometric bar coding
  Environ. Sci. Technol. 47 (3), 1753 - 1760 10.1021/es3041048
• Koch, C., Günther, S., Desta, A.F., Hübschmann, T., Müller, S. (2013):
  Cytometric fingerprinting for analyzing microbial intracommunity structure variation and identifying subcommunity function
  Nat. Protoc. 8 (1), 190 - 202 10.1038/nprot.2012.149
• Lentendu, G., Hübschmann, T., Müller, S., Dunker, S., Buscot, F., Wilhelm, C. (2013):
  Recovery of soil unicellular eukaryotes: an efficiency and activity analysis on the single cell level
  J. Microbiol. Methods 95 (3), 463 - 469 10.1016/j.mimet.2013.05.006
• Mehlig, L., Petzold, M., Heder, C., Günther, S., Müller, S., Eschenhagen, M., Röske, I., Röske, K. (2013):
  Biodiversity of polyphosphate accumulating bacteria in eight WWTPs with different modes of operation
  J. Environ. Eng.-ASCE 139 (8), 1089 - 1098 10.1061/(ASCE)EE.1943-7870.0000711
• Müller, S., Hiller, K. (2013):
  From multi-omics to basic structures of biological systems
  Curr. Opin. Biotechnol. 24 (1), 1 - 3 10.1016/j.copbio.2012.12.002
• Neumeyer, A., Hübschmann, T., Müller, S., Frunzke, J. (2013):
  Monitoring of population dynamics of Corynebacterium glutamicum by multiparameter flow cytometry
  Microb. Biotechnol. 6 (2), 157 - 167 10.1111/1751-7915.12018
• Rohwerder, T., Müller, R.H., Weichler, M.T., Schuster, J., Hübschmann, T., Müller, S., Harms, H. (2013):
  Cultivation of Aquincola tertiaricarbonis L108 on the fuel oxygenate intermediate tert-butyl alcohol induces aerobic anoxygenic photosynthesis at extremely low feeding rates
  Microbiology-(UK) 159 (10), 2180 - 2190 10.1099/mic.0.068957-0
• Vogt, J., Stahl, F., Scheper, T., Müller, S. (2013):
  Isolation of intact RNA from sorted S. cerevisiae cells for differential gene expression analysis
  In: Gupta, V.K., Tuohy, M., Ayyachamy, M., Turner, K.M., O’Donovan, A. (eds.)
  Laboratory protocols in fungal biology : current methods in fungal biology
  Fungal Biology
  Springer, New York, p. 265 - 277 10.1007/978-1-4614-2356-0_21

2012 (2)

• Günther, S., Koch, C., Hübschmann, T., Röske, I., Müller, R., Bley, T., Harms, H., Müller, S. (2012):
  Correlation of community dynamics and process parameters as a tool for the prediction of the stability of wastewater treatment
  Environ. Sci. Technol. 46 (1), 84 - 92 10.1021/es2010682
• Müller, S., Hübschmann, T., Kleinsteuber, S., Vogt, C. (2012):
  High resolution single cell analytics to follow microbial community dynamics in anaerobic ecosystems
  Methods 57 (3), 338 - 349 10.1016/j.ymeth.2012.04.001

2011 (7)

• Bombach, P., Hübschmann, T., Fetzer, I., Kleinsteuber, S., Geyer, R., Harms, H., Müller, S. (2011):
  Resolution of natural microbial community dynamics by community fingerprinting, flow cytometry, and trend interpretation analysis
  In: Müller, S., Bley, T. (eds.)
  High resolution microbial single cell analytics
  Adv. Biochem. Eng. Biotechnol. 124
  Springer, Berlin, Heidelberg, p. 151 - 181 10.1007/10_2010_82
• Harnisch, F., Koch, C., Patil, S.A., Hübschmann, T., Müller, S., Schröder, U. (2011):
  Revealing the electrochemically driven selection in natural community derived microbial biofilms using flow-cytometry
  Energy Environ. Sci. (4), 1265 - 1267 10.1039/c0ee00605j
• Müller, S., Bley, T. (eds., 2011):
  High resolution microbial single cell analytics
  Adv. Biochem. Eng. Biotechnol. 124
  Springer, Berlin, Heidelberg, 233 pp. 10.1007/978-3-642-16887-1
• Müller, S., Johnson, D.R. (2011):
  Application of cytomics to separate natural microbial communities by their physiological properties
  In: de Bruijn, F.J. (ed.)
  Handbook of molecular microbial ecology I : metagenomics and complementary approaches
  Wiley-Blackwell, Hoboken, NJ, p. 727 - 734
• Patil, S.A., Harnisch, F., Koch, C., Hübschmann, T., Fetzer, I., Carmona-Martínez, A.A., Müller, S., Schröder, U. (2011):
  Electroactive mixed culture derived biofilms in microbial bioelectrochemical systems: the role of pH on biofilm formation, performance and composition
  Bioresour. Technol. 102 (20), 9683 - 9690 10.1016/j.biortech.2011.07.087
• Trutnau, M., Petzold, M., Mehlig, L., Eschenhagen, M., Geipel, K., Müller, S., Bley, T., Röske, I. (2011):
  Using a carbon-based ASM3 EAWAG Bio-P for modelling the enhanced biological phosphorus removal in anaerobic/aerobic activated sludge systems
  Bioprocess. Biosyst. Eng. 34 (3), 287 - 295 10.1007/s00449-010-0470-2
• Valet, G., Endl, E., Müller, S. (2011):
  20 years of the German Society for Cytometry: past and future concepts
  Cytom. Part A 79A (11), 891 - 893 10.1002/cyto.a.21141

2010 (7)

• Jehmlich, N., Hübschmann, T., Gesell Salazar, M., Völker, U., Benndorf, D., Müller, S., von Bergen, M., Schmidt, F. (2010):
  Advanced tool for characterization of microbial cultures by combining cytomics and proteomics
  Appl. Microbiol. Biotechnol. 88 (2), 575 - 584 10.1007/s00253-010-2753-6
• Müller, S., Bley, T. (2010):
  Flow cytometry
  In: Flickinger, M.C. (ed.)
  Encyclopedia of industrial biotechnology: bioprocess, bioseparation, and cell technology, Vol. 4
  Wiley, Oxford, p. 2451 - 2467 10.1002/9780470054581.eib320
• Müller, S., Harms, H., Bley, T. (2010):
  Origin and analysis of microbial population heterogeneity in bioprocesses
  Curr. Opin. Biotechnol. 21 (1), 100 - 113 10.1016/j.copbio.2010.01.002
• Müller, S., Nebe-von-Caron, G. (2010):
  Functional single-cell analyses: flow cytometry and cell sorting of microbial populations and communities
  FEMS Microbiol. Rev. 34 (4), 544 - 587 10.1111/j.1574-6976.2010.00214.x
• Müller, S. (2010):
  Functional flow cytometry in environmental microbiology
  In: Timmis, K.N., McGenity, T., van der Meer, J.R., de Lorenzo, V. (eds.)
  Experimental protocols and appendices
  Handbook of Hydrocarbon and Lipid Microbiology Vol. 5, Part 3
  Springer International Publishing, Cham, p. 4103 - 4112 10.1007/978-3-540-77587-4_320
• Sträuber, H., Hübschmann, T., Jehmlich, N., Schmidt, F., von Bergen, M., Harms, H., Müller, S. (2010):
  NBDT (3-(N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino)-3-toluene) - A novel fluorescent dye for studying mechanisms of toluene uptake into vital bacteria
  Cytom. Part A 77A (2), 113 - 120 10.1002/cyto.a.20811
• Sträuber, H., Müller, S. (2010):
  Viability states of bacteria - specific mechanisms of selected probes
  Cytom. Part A 77A (7), 623 - 634 10.1002/cyto.a.20920