Prof. Dr. Hauke Harms
Leiter des Departments Umweltmikrobiologie
Kontakt
Prof. Dr. Hauke Harms
Departmentleiter
Department Umweltmikrobiologie
Helmholtz-Zentrum
für Umweltforschung - UFZ
Permoserstr. 15, 04318 Leipzig
Tel.: +49 341 235-1260
hauke.harms@ufz.de
CV / Wissenschaftlicher Werdegang
1988
Diplom in Biologie an der Universität Hamburg
1988 - 1990
Promotion an der Universität Hamburg zum Thema „Bakterieller Dioxinabbau“
1991 - 1993
Long-Term Fellow der Europäischen Umweltforschungsorganisation (EERO) an der Landwirtschaftlichen Universität Wageningen, Niederlande
1993 - 1998
Oberassistent an der Eidgenössisch Technischen Hochschule (ETH) Zürich und Leiter einer Forschungsgruppe am Eidgenössischen Wasserforschungsinstitut EAWAG
1998 - 2003
Assistenzprofessor für Bodenmikrobiologie an der Ecole Polytechnique Fédérale de Lausanne (EPFL)
seit 2004
Professor für Umweltmikrobiologie an der Universität Leipzig und Leiter des Departments Umweltmikrobiologie am Helmholtz Zentrum für Umweltforschung – UFZ in Leipzig
seit 2013
Sprecher des Helmholtz-Forschungsprogramms ‚Terrestrial Environment‘
Forschungsinteressen
Ich interessiere mich für die Ökologie und Ökophysiologie mikrobieller Gemeinschaften in Böden, Gewässern und technischen Systemen. Ich betrachte den Abbau von Schadstoffen, die und die Umwandlung von Biomasse z.B. in Energieträger als mikrobielle Ökosystemdienstleistungen und verfolge die Aufklärung und Nutzung ökologischer Prinzipien als Grundlage der Entwicklung biotechnologischer Verfahren. Besondere Aufmerksamkeit gilt dabei der Bedeutung mikrobieller Diversität in strukturierten (natürlichen und technischen) Umweltsystemen für die Verlässlichkeit ihres Funktionierens. Ein wichtiges Ziel ist das Design biotechnologischer Verfahren, die ähnlich stabil, autonom und umweltfreundlich sind wie natürliche Ökosysteme.
Internetressourcen
ARSOlux: Entwicklung und Markteinführung ganzzellbasierter Sensoren für Arsen im Wasser
http://futurenow.dw-world.de/deutsch/category/gesundheit/arsen-im-trinkwasser/
http://www.arsolux.ufz.de/
http://www.youtube.com/watch?v=NSm6C8mx6-4
http://idw-online.de/pages/de/news383743
Langzeit-Bioverfügbarkeit mariner Ölverschmutzung
http://www.ufz.de/index.php?de=18580
http://www.zeit.de/wissen/umwelt/2009-09/Exxon-Valdez-Oeltanker
Umweltbiotechnologien auf Grundlage der Aktivitäten und Ökologie von Pilzen
http://www.nature.com/nrmicro/journal/v9/n3/full/nrmicro2519.html
Wikipedia
Publikationen (ab 2001)
- Balciunas, E.M., Kappelmeyer, U., Harms, H., Heipieper, H.J., (2020):
Increasing ibuprofen degradation in constructed wetlands by bioaugmentation with gravel containing biofilms of an ibuprofen-degrading Sphingobium yanoikuyae
Eng. Life Sci. 20 (5-6), 160 - 167
Volltext (DOI) - Becker, D., Popp, D., Harms, H., Centler, F., (2020):
A modular metagenomics pipeline allowing for the inclusion of prior knowledge using the example of anaerobic digestion
Microorganisms 8 (5), art. 669
Volltext (DOI) - Bonk, F., Popp, D., Harms, H., Centler, F., (2018):
PCR-based quantification of taxa-specific abundances in microbial communities: Quantifying and avoiding common pitfalls
J. Microbiol. Methods 153 , 139 - 147
Volltext (DOI) - Bonk, F., Popp, D., Weinrich, S., Sträuber, H., Becker, D., Kleinsteuber, S., Harms, H., Centler, F., (2019):
Determination of microbial maintenance in acetogenesis and methanogenesis by experimental and modeling techniques
Front. Microbiol. 10 , art. 166
Volltext (DOI) - Bonk, F., Popp, D., Weinrich, S., Sträuber, H., Kleinsteuber, S., Harms, H., Centler, F., (2018):
Ammonia inhibition of anaerobic volatile fatty acid degrading microbial communities
Front. Microbiol. 9 , art. 2921
Volltext (DOI) - Bonk, F., Popp, D., Weinrich, S., Sträuber, H., Kleinsteuber, S., Harms, H., Centler, F., (2018):
Intermittent fasting for microbes: how discontinuous feeding increases functional stability in anaerobic digestion
Biotechnol. Biofuels 11 , art. 274
Volltext (DOI) - Duong, H.L., Paufler, S., Harms, H., Maskow, T., Schlosser, D., (2022):
Applicability and information value of biocalorimetry for the monitoring of fungal solid-state fermentation of lignocellulosic agricultural by-products
New Biotech. 66 , 97 - 106
Volltext (DOI) - Duong, H.L., Paufler, S., Harms, H., Schlosser, D., Maskow, T., (2022):
Fungal lignocellulose utilization strategies from a bioenergetic perspective: Quantification of related functional traits using biocalorimetry
Microorganisms 10 (8), art. 1675
Volltext (DOI) - Fricke, C., Harms, H., Maskow, T., (2019):
Rapid calorimetric detection of bacterial contamination: Influence of the cultivation technique
Front. Microbiol. 10 , art. 2530
Volltext (DOI) - Fricke, C., Harms, H., Maskow, T., (2020):
How to speed up the detection of aerobic microbial contaminations by using isothermal microcalorimetry
J. Therm. Anal. Calorim. 142 (5), 1933 - 1949
Volltext (DOI) - Fricke, C., Klee, T., Richter, S., Paufler, S., Harms, H., Maskow, T., (2021):
Numerical heat flow and transport simulation as a development tool for the design of isothermal microcalorimeters
Thermochim. Acta 706 , art. 179070
Volltext (DOI) - Fricke, C., Xu, J., Jiang, F.-L., Liu, Y., Harms, H., Maskow, T., (2020):
Rapid culture‐based detection of Legionella pneumophila using isothermal microcalorimetry with an improved evaluation method
Microb. Biotechnol. 13 (4), 1262 - 1272
Volltext (DOI) - Ghanem, N., Stanley, C.E., Harms, H., Chatzinotas, A., Wick, L.Y., (2019):
Mycelial effects on phage retention during transport in a microfluidic platform
Environ. Sci. Technol. 53 (20), 11755 - 11763
Volltext (DOI) - Ghanem, N., Trost, M., Sanchez Fontanet, L., Harms, H., Chatzinotas, A., Wick, L.Y., (2018):
Changes of the specific infectivity of tracer phages during transport in porous media
Environ. Sci. Technol. 52 (6), 3486 - 3492
Volltext (DOI) - Grosch Schroeder, B., Logroño, W., Nunes da Rocha, U., Harms, H., Nikolausz, M., (2022):
Enrichment of anaerobic microbial communities from midgut and hindgut of sun beetle larvae (Pachnoda marginata) on wheat straw: effect of inoculum preparation
Microorganisms 10 (4), art. 761
Volltext (DOI) - Guo, Y., Baumgart, S., Stärk, H.-J., Harms, H., Müller, S., (2017):
Mass cytometry for detection of silver at the bacterial single cell level
Front. Microbiol. 8 , art. 1326
Volltext (DOI) - Guo, Y., Cichocki, N., Schattenberg, F., Geffers, R., Harms, H., Müller, S., (2019):
AgNPs change microbial community structures of wastewater
Front. Microbiol. 9 , art. 3211
Volltext (DOI) - Guo, Y., Stärk, H.J., Hause, G., Schmidt, M., Harms, H., Wick, L.Y., Müller, S., (2017):
Heterogenic response of prokaryotes toward silver nanoparticles and ions is facilitated by phenotypes and attachment of silver aggregates to cell surfaces
Cytom. Part A 91 (8), 775 - 784
Volltext (DOI) - Harms, H., Smith, K.E.C., Wick, L.Y., (2018):
Problems of hydrophobicity/bioavailability: an introduction
In: Krell, T., (ed.)
Cellular ecophysiology of microbe: Hydrocarbon and lipid interactions
Handbook of Hydrocarbon and Lipid Microbiology
Springer International Publishing, Cham, p. 3 - 15
Volltext (DOI) - Harms, H., Wick, L.Y., (2017):
Determining the tendency of microorganisms to interact with hydrocarbon phases
In: McGenity, T.J., Timmis, K.N., Nogales, B., (eds.)
Hydrocarbon and lipid microbiology protocols. Activities and phenotypes
Springer Protocols Handbooks
Springer, Berlin, Heidelberg, p. 43 - 53
Volltext (DOI) - Harms, H., Wick, L.Y., Schlosser, D., (2017):
The fungal community in organically polluted systems
In: Dighton, J., White, J.F., (eds.)
The fungal community: Its organization and role in the ecosystem
Mycology Series 32
CRC Press / Taylor & Francis, Boca Raton, FL, p. 459 - 469 - Harms, H., Wick, L.Y., Smith, K.E.C., (2018):
Matrix - hydrophobic compound interactions
In: Krell, T., (ed.)
Cellular ecophysiology of microbe: Hydrocarbon and lipid interactions
Handbook of Hydrocarbon and Lipid Microbiology
Springer International Publishing, Cham, p. 33 - 45
Volltext (DOI) - Johnke, J., Baron, M., Leeuw, M., Kushmaro, A., Jurkevitch, E., Harms, H., Chatzinotas, A., (2017):
A generalist protist predator enables coexistence in multitrophic predator-prey systems containing a phage and the bacterial predator Bdellovibrio
Front. Ecol. Evol. 5 , art. 124
Volltext (DOI) - Johnke, J., Boenigk, J., Harms, H., Chatzinotas, A., (2017):
Killing the killer: predation between protists and predatory bacteria
FEMS Microbiol. Lett. 364 (9), fnx089
Volltext (DOI) - Kallies, R., Kiesel, B., Schmidt, M., Ghanem, N., Zopfi, J., Hackermüller, J., Harms, H., Wick, L.Y., Chatzinotas, A., (2019):
Complete genome sequence of Pseudoalteromonas virus vB_PspP-H6/1 that infects Pseudoalteromonas sp. strain H6
Mar. Genom. 47 , art. 100667
Volltext (DOI) - Kallies, R., Kiesel, B., Schmidt, M., Kacza, J., Ghanem, N., Narr, A., Zopfi, J., Wick, L.Y., Hackermüller, J., Harms, H., Chatzinotas, A., (2017):
Complete genome sequence of Pseudoalteromonas phage vB_PspS-H40/1 (formerly H40/1) that infects Pseudoalteromonas sp. strain H40 and is used as biological tracer in hydrological transport studies
Stand. Genomic Sci. 12 , art. 20
Volltext (DOI) - Karakoç, C., Radchuk, V., Harms, H., Chatzinotas, A., (2018):
Interactions between predation and disturbances shape prey communities
Sci. Rep. 8 , art. 2968
Volltext (DOI) - Karakoç, C., Singer, A., Johst, K., Harms, H., Chatzinotas, A., (2017):
Transient recovery dynamics of a predator–prey system under press and pulse disturbances
BMC Ecology 17 , art. 13
Volltext (DOI) - Khan, N., Brizola Toscan, R., Lunayo, A., Wamalwa, B., Muge, E., Mulaa, F.J., Kallies, R., Harms, H., Wick, L.Y., Nunes da Rocha, U., (2022):
Draft genome sequences of two Sphingobium species associated with hexachlorocyclohexane (HCH) degradation isolated from an HCH-contaminated soil
Microbiol. Resour. Announc. 11 (3), e00886-21
Volltext (DOI) - Khan, N., Brizola Toscan, R., Lunayo, A., Wamalwa, B., Muge, E., Mulaa, F.J., Kallies, R., Harms, H., Wick, L.Y., Nunes da Rocha, U., (2021):
Draft genome sequence of Fusarium equiseti K3, a fungal species isolated from hexachlorocyclohexane-contaminated soil
Microbiol. Resour. Announc. 10 (47), e00885-21
Volltext (DOI) - König, S., Vogel, H.-J., Harms, H., Worrich, A., (2020):
Physical, chemical and biological effects on soil bacterial dynamics in microscale models
Front. Ecol. Evol. 8 , art. 53
Volltext (DOI) - König, S., Worrich, A., Banitz, T., Centler, F., Harms, H., Kästner, M., Miltner, A., Wick, L.Y., Thullner, M., Frank, K., (2018):
Spatiotemporal disturbance characteristics determine functional stability and collapse risk of simulated microbial ecosystems
Sci. Rep. 8 , art. 9488
Volltext (DOI) - König, S., Worrich, A., Banitz, T., Harms, H., Kästner, M., Miltner, A., Wick, L.Y., Frank, K., Thullner, M., Centler, F., (2018):
Functional resistance to recurrent spatially heterogeneous disturbances is facilitated by increased activity of surviving bacteria in a virtual ecosystem
Front. Microbiol. 9 , art. 734
Volltext (DOI) - Kopinke, F.-D., Harms, H., (2020):
Letter: What are the active species in the photocatalytic disinfection of water?
Chem 6 (4), 806 - 807
Volltext (DOI) - Krohn, S., Zeller, K., Böhm, S., Chatzinotas, A., Harms, H., Hartmann, I., Heidtmann, A., Herber, A., Kaiser, T., Treuheit, M., Hoffmeister, A., Berg, T., Engelmann, C., (2018):
Molecular quantification and differentiation of Candida species in biological specimens of patients with liver cirrhosis
PLOS One 13 (6), e0197319
Volltext (DOI) - Krueger, M.C., Seiwert, B., Prager, A., Zhang, S., Abel, B., Harms, H., Schlosser, D., (2017):
Degradation of polystyrene and selected analogues by biological Fenton chemistry approaches: opportunities and limitations
Chemosphere 173 , 520 - 528
Volltext (DOI) - Lambrecht, J., Cichocki, N., Hübschmann, T., Koch, C., Harms, H., Müller, S., (2017):
Flow cytometric quantification, sorting and sequencing of methanogenic archaea based on F420 autofluorescence
Microb. Cell. Fact. 16 , art. 180
Volltext (DOI) - Lambrecht, J., Cichocki, N., Schattenberg, F., Kleinsteuber, S., Harms, H., Müller, S., Sträuber, H., (2019):
Key sub‑community dynamics of medium‑chain carboxylate production
Microb. Cell. Fact. 18 , art. 92
Volltext (DOI) - Lambrecht, J., Schattenberg, F., Harms, H., Müller, S., (2018):
Characterizing microbiome dynamics – flow cytometry based workflows from pure cultures to natural communities
J. Vis. Exp. (137), e58033
Volltext (DOI) - Liu, B., Kleinsteuber, S., Centler, F., Harms, H., Sträuber, H., (2020):
Competition between butyrate fermenters and chain-elongating bacteria limits the efficiency of medium-chain carboxylate production
Front. Microbiol. 11 , art. 336
Volltext (DOI) - Liu, B., Popp, D., Müller, N., Sträuber, H., Harms, H., Kleinsteuber, S., (2020):
Three novel Clostridia isolates produce n-caproate and iso-butyrate from lactate: comparative genomics of chain-elongating bacteria
Microorganisms 8 (12), art. 1970
Volltext (DOI) - Liu, B., Popp, D., Sträuber, H., Harms, H., Kleinsteuber, S., (2020):
Draft genome sequences of three Clostridia isolates involved in lactate-based chain elongation
Microbiol. Resour. Announc. 9 (32), e00679-20
Volltext (DOI) - Liu, B., Sträuber, H., Saraiva, J., Harms, H., Silva, S.G., Kasmanas, J.C., Kleinsteuber, S., Nunes da Rocha, U., (2022):
Machine learning-assisted identification of bioindicators predicts medium-chain carboxylate production performance of an anaerobic mixed culture
Microbiome 10 , art. 48
Volltext (DOI) - Liu, Z., Cichocki, N., Bonk, F., Günther, S., Schattenberg, F., Harms, H., Centler, F., Müller, S., (2018):
Ecological stability properties of microbial communities assessed by flow cytometry
mSphere 3 (1), e00564-17
Volltext (DOI) - Logroño, W., Nikolausz, M., Harms, H., Kleinsteuber, S., (2022):
Physiological effects of 2-bromoethanesulfonate on hydrogenotrophic pure and mixed cultures
Microorganisms 10 (2), art. 355
Volltext (DOI) - Logroño, W., Popp, D., Kleinsteuber, S., Sträuber, H., Harms, H., Nikolausz, M., (2020):
Microbial resource management for ex situ biomethanation of hydrogen at alkaline pH
Microorganisms 8 , art. 614
Volltext (DOI) - Logroño, W., Popp, D., Nikolausz, M., Kluge, P., Harms, H., Kleinsteuber, S., (2021):
Microbial communities in flexible biomethanation of hydrogen are functionally resilient upon starvation
Front. Microbiol. 12 , art. 619632
Volltext (DOI) - Lucas, R., Groeneveld, J., Harms, H., Johst, K., Frank, K., Kleinsteuber, S., (2017):
A critical evaluation of ecological indices for the comparative analysis of microbial communities based on molecular datasets
FEMS Microbiol. Ecol. 93 (1), fiw209
Volltext (DOI) - Lv, Z., Leite, A.F., Harms, H., Glaser, K., Liebetrau, J., Kleinsteuber, S., Nikolausz, M., (2019):
Microbial community shifts in biogas reactors upon complete or partial ammonia inhibition
Appl. Microbiol. Biotechnol. 103 (1), 519 - 533
Volltext (DOI) - Meyer-Cifuentes, I., Martinez-Lavanchy, P.M., Marin-Cevada, V., Böhnke, S., Harms, H., Müller, J.A., Heipieper, H.J., (2017):
Isolation and characterization of Magnetospirillum sp. strain 15-1 as a representative anaerobic toluene-degrader from a constructed wetland model
PLOS One 12 (4), e0174750
Volltext (DOI) - Narr, A., Nawaz, A., Wick, L.Y., Harms, H., Chatzinotas, A., (2017):
Soil viral communities vary temporally and along a land use transect as revealed by virus-like particle counting and a modified community fingerprinting approach (fRAPD)
Front. Microbiol. 8 , art. 1975
Volltext (DOI) - Otto, S., Bruni, E.P., Harms, H., Wick, L.Y., (2017):
Catch me if you can: dispersal and foraging of Bdellovibrio bacteriovorus 109J along mycelia
ISME J. 11 (2), 386 - 393
Volltext (DOI) - Otto, S., Harms, H., Wick, L.Y., (2017):
Effects of predation and dispersal on bacterial abundance and contaminant biodegradation
FEMS Microbiol. Ecol. 93 (2), fiw241
Volltext (DOI) - Ozbayram, E.G., Ince, O., Ince, B., Harms, H., Kleinsteuber, S., (2018):
Comparison of rumen and manure microbiomes and implications for the inoculation of anaerobic digesters
Microorganisms 6 (1), art. 15
Volltext (DOI) - Popp, D., Plugge, C.M., Kleinsteuber, S., Harms, H., Sträuber, H., (2017):
Inhibitory effect of coumarin on syntrophic fatty acid-oxidizing and methanogenic cultures and biogas reactor microbiomes
Appl. Environ. Microb. 83 (13), e00438-17
Volltext (DOI) - Popp, D., von Gillhaussen, P., Weidlich, E.W.A., Sträuber, H., Harms, H., Temperton, V.M., (2017):
Methane yield of biomass from extensive grassland is affected by compositional changes induced by order of arrival
GCB Bioenergy 9 (10), 1555 - 1562
Volltext (DOI) - Puiggené, Ò., Cárdenas Espinosa, M.J., Schlosser, D., Thies, S., Jehmlich, N., Kappelmeyer, U., Schreiber, S., Wibberg, D., Kalinowski, J., Harms, H., Heipieper, H.J., Eberlein, C., (2022):
Extracellular degradation of a polyurethane oligomer involving outer membrane vesicles and further insights on the degradation of 2,4-diaminotoluene in Pseudomonas capeferrum TDA1
Sci. Rep. 12 , art. 2666
Volltext (DOI) - Rohde, M.-T., Tischer, S., Harms, H., Rohwerder, T., (2017):
Production of 2-hydroxyisobutyric acid from methanol by Methylobacterium extorquens AM1 expressing (R)-3-hydroxybutyryl coenzyme A-isomerizing enzymes
Appl. Environ. Microb. 83 (3), e02622-16
Volltext (DOI) - Shan, Y., Harms, H., Wick, L.Y., (2018):
Electric field effects on bacterial deposition and transport in porous media
Environ. Sci. Technol. 52 (24), 14294 - 14301
Volltext (DOI) - Shan, Y., Liu, L., Liu, Y., Harms, H., Wick, L.Y., (2020):
Effects of electrokinetic phenomena on bacterial deposition monitored by quartz crystal microbalance with dissipation monitoring
Environ. Sci. Technol. 54 (21), 14036 - 14045
Volltext (DOI) - Shan, Y., Qin, J., Harms, H., Wick, L.Y., (2020):
Electrokinetic effects on the interaction of phenanthrene with geo-sorbents
Chemosphere 242 , art. 125161
Volltext (DOI) - Vásquez-Piñeros, M.A., Martínez-Lavanchy, P.M., Jehmlich, N., Pieper, D.H., Rincón, C.A., Harms, H., Junca, H., Heipieper, H.J., (2018):
Delftia sp. LCW, a strain isolated from a constructed wetland shows novel properties for dimethylphenol isomers degradation
BMC Microbiol. 18 , art. 108
Volltext (DOI) - Vogel, K., Greinert, T., Harms, H., Sadowski, G., Held, C., Maskow, T., (2020):
Influence of cytosolic conditions on the reaction equilibrium and the reaction enthalpy of the enolase reaction accessed by calorimetry and van ‘t HOFF
Biochim. Biophys. Acta-Gen. Subj. 1864 (10), art. 129675
Volltext (DOI) - Vogel, K., Greinert, T., Held, C., Harms, H., Maskow, T., (2020):
Application of irreversible thermodynamics to determine the influence of cell mimicking conditions on the kinetics of equilibrium reactions of the glycolysis
Biophys. J. 118 (3, Suppl. 1), 346a - 347a
Volltext (DOI) - Vogel, K., Greinert, T., Reichard, M., Held, C., Harms, H., Maskow, T., (2020):
Thermodynamics and kinetics of glycolytic reactions. Part I: Kinetic modeling based on irreversible thermodynamics and validation by calorimetry
Int. J. Mol. Sci. 21 (21), art. 8341
Volltext (DOI) - Vogel, K., Greinert, T., Reichard, M., Held, C., Harms, H., Maskow, T., (2020):
Thermodynamics and kinetics of glycolytic reactions. Part II: Influence of cytosolic conditions on thermodynamic state variables and kinetic parameters
Int. J. Mol. Sci. 21 (21), art. 7921
Volltext (DOI) - Vogel, K., Wei, R., Pfaff, L., Breite, D., Al-Fathi, H., Ortmann, C., Estrela-Lopis, I., Venus, T., Schulze, A., Harms, H., Bornscheuer, U.T., Maskow, T., (2021):
Enzymatic degradation of polyethylene terephthalate nanoplastics analyzed in real time by isothermal titration calorimetry
Sci. Total Environ. 773 , art. 145111
Volltext (DOI) - Vučić, V., Süring, C., Harms, H., Müller, S., Günther, S., (2021):
A framework for P-cycle assessment in wastewater treatment plants
Sci. Total Environ. 760 , art. 143392
Volltext (DOI) - Weise, H., Auge, H., Baessler, C., Bärlund, I., Bennett, E.M., Berger, U., Bohn, F., Bonn, A., Borchardt, D., Brand, F., Chatzinotas, A., Corstanje, R., De Laender, F., Dietrich, P., Dunker, S., Durka, W., Fazey, I., Groeneveld, J., Guilbaud, C.S.E., Harms, H., Harpole, S., Harris, J., Jax, K., Jeltsch, F., Johst, K., Joshi, J., Klotz, S., Kühn, I., Kuhlicke, C., Müller, B., Radchuk, V., Reuter, H., Rinke, K., Schmitt-Jansen, M., Seppelt, R., Singer, A., Standish, R.J., Thulke, H.-H., Tietjen, B., Weitere, M., Wirth, C., Wolf, C., Grimm, V., (2020):
Resilience trinity: safeguarding ecosystem functioning and services across three different time horizons and decision contexts
Oikos 129 (4), 445 - 456
Volltext (DOI) - Wick, L.Y., Harms, H., (2018):
The mycosphere as a hotspot for the biotransformation of contaminants in soil
In: Krell, T., (ed.)
Cellular ecophysiology of microbe: Hydrocarbon and lipid interactions
Handbook of Hydrocarbon and Lipid Microbiology
Springer International Publishing, Cham, p. 315 - 324
Volltext (DOI) - Wick, L.Y., Harms, H., Smith, K.E.C., (2018):
Microorganism-hydrophobic compound interactions
In: Krell, T., (ed.)
Cellular ecophysiology of microbe: Hydrocarbon and lipid interactions
Handbook of Hydrocarbon and Lipid Microbiology
Springer International Publishing, Cham, p. 17 - 31
Volltext (DOI) - Winter, M., Thürmann, L., Gu, Z., Schüürmann, G., Herberth, G., Hinz, D., von Bergen, M., Harms, H., Olek, S., Röder, S., Borte, M., Eils, R., Lehmann, I., Trump, S., (2017):
The benzene metabolite 1,4-benzoquinone reduces regulatory T-cell function: A potential mechanism for tobacco smoke–associated atopic dermatitis
J. Allergy Clin. Immunol. 140 (2), 603 - 605
Volltext (DOI) - Wintsche, B., Jehmlich, N., Popp, D., Harms, H., Kleinsteuber, S., (2018):
Metabolic adaptation of methanogens in anaerobic digesters upon trace element limitation
Front. Microbiol. 9 , art. 405
Volltext (DOI) - Worrich, A., Musat, N., Harms, H., (2019):
Associational effects in the microbial neighborhood
ISME J. 13 , 2143 - 2149
Volltext (DOI) - Worrich, A., Stryhanyuk, H., Musat, N., König, S., Banitz, T., Centler, F., Frank, K., Thullner, M., Harms, H., Richnow, H.-H., Miltner, A., Kästner, M., Wick, L.Y., (2017):
Mycelium-mediated transfer of water and nutrients stimulates bacterial activity in dry and oligotrophic environments
Nat. Commun. 8 , art. 15472
Volltext (DOI) - Xiong, B.-J., Dusny, C., Wang, L., Appel, J., Lindstaedt, K., Schlosser, D., Harms, H., Wick, L., (2021):
Illuminate the hidden: in vivo mapping of microscale pH in the mycosphere using a novel whole-cell biosensor
ISME Commun. 1 , art. 75
Volltext (DOI) - Xiong, B.-J., Kleinsteuber, S., Sträuber, H., Dusny, C., Harms, H., Wick, L.Y., (2022):
Impact of fungal hyphae on growth and dispersal of obligate anaerobic bacteria in aerated habitats
mBio 13 (3), e00769-22
Volltext (DOI) - Xiong, B.-J., Stanley, C.E., Dusny, C., Schlosser, D., Harms, H., Wick, L.Y., (2022):
pH distribution along growing fungal hyphae at microscale
J. Fungi 8 (6), art. 599
Volltext (DOI) - You, X., Kallies, R., Hild, K., Hildebrandt, A., Harms, H., Chatzinotas, A., Wick, L.Y., (2022):
Transport of marine tracer phage particles in soil
Sci. Total Environ. 814 , art. 152704
Volltext (DOI) - You, X., Kallies, R., Kühn, I., Schmidt, M., Harms, H., Chatzinotas, A., Wick, L.Y., (2022):
Phage co-transport with hyphal-riding bacteria fuels bacterial invasion in a water-unsaturated microbial model system
ISME J. 16 (5), 1275 - 1283
Volltext (DOI) - You, X., Klose, N., Kallies, R., Harms, H., Chatzinotas, A., Wick, L.Y., (2022):
Mycelia-assisted isolation of non-host bacteria able to co-transport phages
Viruses 14 (2), art. 195
Volltext (DOI) - Zhang, X., Barceló, D., Clougherty, R.J., Gao, B., Harms, H., Tefsen, B., Vithanage, M., Wang, H., Wang, Z., Wells, M., (2022):
“Potentially toxic element”─Something that means everything means nothing
Environ. Sci. Technol. 56 (17), 11922 - 11925
Volltext (DOI)
- Banitz, T., Frank, K., Wick, L.Y., Harms, H., Johst, K., (2016):
Spatial metrics as indicators of biodegradation benefits from bacterial dispersal networks
Ecol. Indic. 60 , 54 - 63
Volltext (DOI) - Berthold, T., Centler, F., Hübschmann, T., Remer, R., Thullner, M., Harms, H., Wick, L.Y., (2016):
Mycelia as a focal point for horizontal gene transfer among soil bacteria
Sci. Rep. 6 , art. 36390
Volltext (DOI) - Ghanem, N., Kiesel, B., Kallies, R., Harms, H., Chatzinotas, A., Wick, L.Y., (2016):
Marine phages as tracers: effects of size, morphology, and physico–chemical surface properties on transport in a porous medium
Environ. Sci. Technol. 50 (23), 12816 - 12824
Volltext (DOI) - Günther, S., Faust, K., Schumann, J., Harms, H., Raes, J., Müller, S., (2016):
Species-sorting and mass-transfer paradigms control managed natural metacommunities
Environ. Microbiol. 18 (12), 4862 - 4877
Volltext (DOI) - Jahn, M., Vorpahl, C., Hübschmann, T., Harms, H., Müller, S., (2016):
Copy number variability of expression plasmids determined by cell sorting and Droplet Digital PCR
Microb. Cell. Fact. 15 , art. 211
Volltext (DOI) - Khan, A.M., Wick, L.Y., Harms, H., Thullner, M., (2016):
Biodegradation of vapor-phase toluene in unsaturated porous media: Column experiments
Environ. Pollut. 211 , 325 - 331
Volltext (DOI) - Leite, A.F., Janke, L., Harms, H., Richnow, H.-H., Nikolausz, M., (2016):
Lessons learned from the microbial ecology resulting from different inoculation strategies for biogas production from waste products of the bioethanol/sugar industry
Biotechnol. Biofuels 9 , art. 144
Volltext (DOI) - Otto, S., Banitz, T., Thullner, M., Harms, H., Wick, L.Y., (2016):
Effects of facilitated bacterial dispersal on the degradation and emission of a desorbing contaminant
Environ. Sci. Technol. 50 (12), 6320 - 6326
Volltext (DOI) - Popp, D., Harms, H., Sträuber, H., (2016):
The alkaloid gramine in the anaerobic digestion process—inhibition and adaptation of the methanogenic community
Appl. Microbiol. Biotechnol. 100 (16), 7311 - 7322
Volltext (DOI) - Rohde, M.-T., Paufler, S., Harms, H., Maskow, T., (2016):
Calorespirometric feeding control enhances bioproduction from toxic feedstocks—Demonstration for biopolymer production out of methanol
Biotechnol. Bioeng. 113 (10), 2113 - 2121
Volltext (DOI) - Saleem, M., Fetzer, I., Harms, H., Chatzinotas, A., (2016):
Trophic complexity in aqueous systems: bacterial species richness and protistan predation regulate dissolved organic carbon and dissolved total nitrogen removal
Proc. R. Soc. B-Biol. Sci. 283 (1825), art. 20152724
Volltext (DOI) - Wintsche, B., Glaser, K., Sträuber, H., Centler, F., Liebetrau, J., Harms, H., Kleinsteuber, S., (2016):
Trace elements induce predominance among methanogenic activity in anaerobic digestion
Front. Microbiol. 7 , art. 2034
Volltext (DOI) - Worrich, A., König, S., Banitz, T., Centler, F., Frank, K., Thullner, M., Harms, H., Miltner, A., Wick, L.Y., Kaestner, M., (2016):
Bacterial dispersal promotes biodegradation in heterogeneous systems exposed to osmotic stress
Front. Microbiol. 7 , art. 1214
Volltext (DOI) - Worrich, A., König, S., Miltner, A., Banitz, T., Centler, F., Frank, K., Thullner, M., Harms, H., Kästner, M., Wick, L.Y., (2016):
Mycelium-like networks increase bacterial dispersal, growth, and biodegradation in a model ecosystem at various water potentials
Appl. Environ. Microb. 82 (10), 2902 - 2908
Volltext (DOI)
- Fetzer, I., Johst, K., Schäwe, R., Banitz, T., Harms, H., Chatzinotas, A., (2015):
The extent of functional redundancy changes as species’ roles shift in different environments
Proc. Natl. Acad. Sci. U.S.A. 112 (48), 14888 - 14893
Volltext (DOI) - Glaser, K., Kuppardt, A., Boenigk, J., Harms, H., Fetzer, I., Chatzinotas, A., (2015):
The influence of environmental factors on protistan microorganisms in grassland soils along a land-use gradient
Sci. Total Environ. 537 , 33 - 42
Volltext (DOI) - Krueger, M.C., Harms, H., Schlosser, D., (2015):
Prospects for microbiological solutions to environmental pollution with plastics
Appl. Microbiol. Biotechnol. 99 (1), 8857 - 8874
Volltext (DOI) - Kurteva-Yaneva, N., Zahn, M., Weichler, M.-T., Starke, R., Harms, H., Müller, R.H., Sträter, N., Rohwerder, T., (2015):
Structural basis of the stereospecificity of bacterial B12-dependent 2-hydroxyisobutyryl-CoA mutase
J. Biol. Chem. 290 , 9727 - 9737
Volltext (DOI) - Leite, A.F., Janke, L., Harms, H., Zang, J.W., Fonseca-Zang, W.A., Stinner, W., Nikolausz, M., (2015):
Assessment of the variations in characteristics and methane potential of major waste products from the Brazilian bioethanol industry along an operating season
Energy Fuels 29 (7), 4022 - 4029
Volltext (DOI) - Leite, A.F., Janke, L., Lv, Z., Harms, H., Richnow, H.-H., Nikolausz, M., (2015):
Improved monitoring of semi-continuous anaerobic digestion of sugarcane waste: effects of increasing organic loading rate on methanogenic community dynamics
Int. J. Mol. Sci. 16 (10), 23210 - 23226
Volltext (DOI) - Lucas, R., Kuchenbuch, A., Fetzer, I., Harms, H., Kleinsteuber, S., (2015):
Long-term monitoring reveals stable and remarkably similar microbial communities in parallel full-scale biogas reactors digesting energy crops
FEMS Microbiol. Ecol. 91 (3), fiv004
Volltext (DOI) - Melzer, S., Winter, G., Jäger, K., Hübschmann, T., Hause, G., Syrowatka, F., Harms, H., Tárnok, A., Müller, S., (2015):
Cytometric patterns reveal growth states of Shewanella putrefaciens
Microb. Biotechnol. 8 (3), 379 - 391
Volltext (DOI) - Otto, B., Beuchel, C., Liers, C., Reisser, W., Harms, H., Schlosser, D., (2015):
Laccase-like enzyme activities from chlorophycean green algae with potential for bioconversion of phenolic pollutants
FEMS Microbiol. Lett. 362 (11), fnv072
Volltext (DOI) - Popp, D., Schrader, S., Kleinsteuber, S., Harms, H., Sträuber, H., (2015):
Biogas production from coumarin-rich plants—inhibition by coumarin and recovery by adaptation of the bacterial community
FEMS Microbiol. Ecol. 91 (9), fiv103
Volltext (DOI) - Przybylski, D., Rohwerder, T., Dilßner, C., Maskow, T., Harms, H., Müller, R.H., (2015):
Exploiting mixtures of H2, CO2, and O2 for improved production of methacrylate precursor 2-hydroxyisobutyric acid by engineered Cupriavidus necator strains
Appl. Microbiol. Biotechnol. 99 (5), 2131 - 2145
Volltext (DOI) - Qin, J., Moustafa, A., Harms, H., El-Din, M.G., Wick, L.Y., (2015):
The power of power: electrokinetic control of PAH interactions with exfoliated graphite
J. Hazard. Mater. 288 , 25 - 33
Volltext (DOI) - Qin, J., Sun, X., Liu, Y., Berthold, T., Harms, H., Wick, L.Y., (2015):
Electrokinetic control of bacterial deposition and transport
Environ. Sci. Technol. 49 (9), 5663 - 5671
Volltext (DOI) - Siegfried, K., Hahn-Tomer, S., Koelsch, A., Osterwalder, E., Mattusch, J., Stärk, H.-J., Meichtry, M., De Seta, E.G., Reina, F.D., Panigatti, C., Litter, M.I., Harms, H., (2015):
Introducing simple detection of bioavailable arsenic at Rafaela (Santa Fe Province, Argentina) using the ARSOlux biosensor
Int. J. Environ. Res. Public Health 12 (5), 5465 - 5482
Volltext (DOI) - Steinbach, A., Schulz, S., Giebler, J., Schulz, S., Pronk, G.J., Kögel-Knabner, I., Harms, H., Wick, L.Y., Schloter, M., (2015):
Clay minerals and metal oxides strongly influence the structure of alkane-degrading microbial communities during soil maturation
ISME J. 9 (7), 1687 - 1691
Volltext (DOI) - Weichler, M.-T., Kurteva-Yaneva, N., Przybylski, D., Schuster, J., Müller, R.H., Harms, H., Rohwerder, T., (2015):
Thermophilic coenzyme B12-dependent acyl-coenzyme A (CoA) mutase from Kyrpidia tusciae DSM 2912 preferentially catalyzes isomerization of (R)-3-hydroxybutyryl- and 2-hydroxyisobutyryl-CoA
Appl. Environ. Microb. 81 (14), 4564 - 4572
Volltext (DOI)
- Banitz, T., Johst, K., Wick, L.Y., Schamfuß, S., Harms, H., Frank, K., (2014):
Corrigendum: Highways versus pipelines: contributions of two fungal transport mechanisms to efficient bioremediation (vol 5, pg 211, 2013)
Environ. Microbiol. Rep. 6 (4), 414 - 414
Volltext (DOI) - Bühligen, F., Lindner, P., Fetzer, I., Stahl, F., Scheper, T., Harms, H., Müller, S., (2014):
Analysis of aging in lager brewing yeast during serial repitching
J. Biotechnol. 187 , 60 - 70
Volltext (DOI) - Giebler, J., Wick, L.Y., Harms, H., Chatzinotas, A., (2014):
Evaluating T-RFLP protocols to sensitively analyze the genetic diversity and community changes of soil alkane degrading bacteria
Eur. J. Soil Biol. 65 , 107 - 113
Volltext (DOI) - Glaser, K., Kuppardt, A., Krohn, S., Heidtmann, A., Harms, H., Chatzinotas, A., (2014):
Primer pairs for the specific environmental detection and T-RFLP analysis of the ubiquitous flagellate taxa Chrysophyceae and Kinetoplastea
J. Microbiol. Methods 100 , 8 - 16
Volltext (DOI) - Hahn-Tomer, S., Siegfried, K., Chatzinotas, A., Kuppardt, A., Harms, H., (2014):
ARSOlux—arsenic biosensor based on bioreporter bacteria
In: Litter, M.I., Nicolli, H.B., Meichtry, M., Quici, N., Bundschuh, J., Bhattacharya, P., Naidu, R., (eds.)
One Century of the Discovery of Arsenicosis in Latin America (1914-2014) As2014. Proceedings of the 5th International Congress on Arsenic in the Environment, May 11-16, 2014, Buenos Aires, Argentina
CRC Press, Boca Raton, FL, p. 207 - 208
Volltext (DOI) - Harms, H., Junca, H., (2014):
Editorial overview: Environmental Biotechnology
Curr. Opin. Biotechnol. 27 , vii - ix
Volltext (DOI) - Jahn, M., Vorpahl, C., Türkowsky, D., Lindmeyer, M., Bühler, B., Harms, H., Müller, S., (2014):
Population heterogeneity in Pseudomonas putida analyzed on the single cell level using proteomics and digital PCR
New Biotech. 31 (Suppl.), S58 - S59
Volltext (DOI) - Jahn, M., Vorpahl, C., Türkowsky, D., Lindmeyer, M., Bühler, B., Harms, H., Müller, S., (2014):
Accurate determination of plasmid copy number of flow-sorted cells using droplet digital PCR
Anal. Chem. 86 (12), 5969 - 5976
Volltext (DOI) - Koch, C., Harms, H., Müller, S., (2014):
Dynamics in the microbial cytome — single cell analytics in natural systems
Curr. Opin. Biotechnol. 27 , 134 - 141
Volltext (DOI) - Koch, C., Müller, S., Harms, H., Harnisch, F., (2014):
Microbiomes in bioenergy production: From analysis to management
Curr. Opin. Biotechnol. 27 , 65 - 72
Volltext (DOI) - Kuppardt, A., Kleinsteuber, S., Vogt, C., Lüders, T., Harms, H., Chatzinotas, A., (2014):
Phylogenetic and functional diversity within toluene-degrading, sulphate-reducing consortia enriched from a contaminated aquifer
Microb. Ecol. 68 (2), 222 - 234
Volltext (DOI) - Lv, Z., Hu, M., Harms, H., Richnow, H.H., Liebetrau, J., Nikolausz, M., (2014):
Stable isotope composition of biogas allows early warning of complete process failure as a result of ammonia inhibition in anaerobic digesters
Bioresour. Technol. 167 , 251 - 259
Volltext (DOI) - Lv, Z., Leite, A.F., Harms, H., Richnow, H.H., Liebetrau, J., Nikolausz, M., (2014):
Influences of the substrate feeding regime on methanogenic activity in biogas reactors approached by molecular and stable isotope methods
Anaerobe 29 , 91 - 99
Volltext (DOI) - Morais, F.M., Buchholz, F., Hartmann, T., Lerchner, J., Neu, T.R., Kiesel, B., Harms, H., Maskow, T., (2014):
Chip-calorimetric monitoring of biofilm eradication with bacteriophages reveals an unexpected infection-related heat profile
J. Therm. Anal. Calorim. 115 (3), 2203 - 2210
Volltext (DOI) - Schamfuß, S., Neu, T.R., Harms, H., Wick, L.Y., (2014):
A whole cell bioreporter approach to assess transport and bioavailability of organic contaminants in water unsaturated systems
J. Vis. Exp. 94 , e52334
Volltext (DOI) - Singh, S., Harms, H., Schlosser, D., (2014):
Screening of ecologically diverse fungi for their potential to pretreat lignocellulosic bioenergy feedstock
Appl. Microbiol. Biotechnol. 98 (7), 3355 - 3370
Volltext (DOI)
- Banitz, T., Johst, K., Wick, L.Y., Schamfuß, S., Harms, H., Frank, K., (2013):
Highways versus pipelines: contributions of two fungal transport mechanisms to efficient bioremediation
Environ. Microbiol. Rep. 5 (2), 211 - 218
Volltext (DOI) - Bühligen, F., Rüdinger, P., Fetzer, I., Stahl, F., Scheper, T., Harms, H., Müller, S., (2013):
Sustainability of industrial yeast serial repitching practice studied by gene expression and correlation analysis
J. Biotechnol. 168 (4), 718 - 728
Volltext (DOI) - Giebler, J., Wick, L.Y., Chatzinotas, A., Harms, H., (2013):
Alkane-degrading bacteria at the soil–litter interface: comparing isolates with T-RFLP-based community profiles
FEMS Microbiol. Ecol. 86 (1), 45 - 58
Volltext (DOI) - Giebler, J., Wick, L.Y., Schloter, M., Harms, H., Chatzinotas, A., (2013):
Evaluating the assignment of alkB terminal restriction fragments and sequence types to distinct bacterial taxa
Appl. Environ. Microb. 79 (9), 3129 - 3132
Volltext (DOI) - Jahn, M., Seifert, J., Hübschmann, T., von Bergen, M., Harms, H., Müller, S., (2013):
Comparison of preservation methods for bacterial cells in cytomics and proteomics
Journal of Integrated OMICS 3 (1), 25 - 33
Volltext (DOI) - Koch, C., Fetzer, I., Harms, H., Müller, S., (2013):
CHIC—an automated approach for the detection of dynamic variations in complex microbial communities
Cytom. Part A 83 (6), 561 - 567
Volltext (DOI) - Koch, C., Fetzer, I., Schmidt, T., Harms, H., Müller, S., (2013):
Monitoring functions in managed microbial systems by cytometric bar coding
Environ. Sci. Technol. 47 (3), 1753 - 1760
Volltext (DOI) - Leibeling, S., Maeß, M.B., Centler, F., Kleinsteuber, S., von Bergen, M., Thullner, M., Harms, H., Müller, R.H., (2013):
Posttranslational oxidative modification of (R)-2-(2,4-dichlorophenoxy)propionate/α-ketoglutarate-dependent dioxygenases (RdpA) leads to improved degradation of 2,4-dichlorophenoxyacetate (2,4-D)
Eng. Life Sci. 13 (3), 278 - 291
Volltext (DOI) - Mariana, F., Buchholz, F., Lerchner, J., Neu, T.R., Harms, H., Maskow, T., (2013):
Chip-calorimetric monitoring of biofilm eradication with antibiotics provides mechanistic information
Int. J. Med. Microbiol. 303 (3), 158 - 165
Volltext (DOI) - Paufler, S., Weichler, M.-T., Harms, H., Maskow, T., (2013):
Simple improvement of the sensitivity of a heat flux reaction calorimeter to monitor bioprocesses with weak heat production
Thermochim. Acta 569 , 71 - 77
Volltext (DOI) - Przybylski, D., Rohwerder, T., Harms, H., Yaneva, N., Müller, R.H., (2013):
Synthesis of the building block 2-hydroxyisobutyrate from fructose and butyrate by Cupriavidus necator H16
Appl. Microbiol. Biotechnol. 97 (20), 8875 - 8885
Volltext (DOI) - Rohwerder, T., Müller, R.H., Weichler, M.T., Schuster, J., Hübschmann, T., Müller, S., Harms, H., (2013):
Cultivation of Aquincola tertiaricarbonis L108 on the fuel oxygenate intermediate tert-butyl alcohol induces aerobic anoxygenic photosynthesis at extremely low feeding rates
Microbiology-(UK) 159 (10), 2180 - 2190
Volltext (DOI) - Saleem, M., Fetzer, I., Harms, H., Chatzinotas, A., (2013):
Diversity of protists and bacteria determines predation performance and stability
ISME J. 7 (10), 1912 - 1921
Volltext (DOI) - Schamfuß, S., Neu, T.R., van der Meer, J.R., Tecon, R., Harms, H., Wick, L.Y., (2013):
Impact of mycelia on the accessibility of fluorene to PAH-degrading bacteria
Environ. Sci. Technol. 47 (13), 6908 - 6915
Volltext (DOI) - Schuster, J., Purswani, J., Breuer, U., Pozo, C., Harms, H., Müller, R.H., Rohwerder, T., (2013):
Constitutive expression of the cytochrome P450 EthABCD monooxygenase system enables degradation of synthetic dialkyl ethers in aquincola tertiaricarbonis L108
Appl. Environ. Microb. 79 (7), 2321 - 2327
Volltext (DOI) - Tischer, K., Kleinsteuber, S., Schleinitz, K.M., Fetzer, I., Spott, O., Stange, F., Lohse, U., Franz, J., Neumann, F., Gerling, S., Schmidt, C., Hasselwander, E., Harms, H., Wendeberg, A., (2013):
Microbial communities along biogeochemical gradients in a hydrocarbon-contaminated aquifer
Environ. Microbiol. 15 (9), 2603 - 2615
Volltext (DOI) - Wick, L.Y., Harms, H., (2013):
Unterirdische Autobahnen: Pilze beim Schadstoffabbau
Biospektrum 19 (7), 720 - 722
Volltext (DOI)
- Banitz, T., Johst, K., Wick, L.Y., Fetzer, I., Harms, H., Frank, K., (2012):
The relevance of conditional dispersal for bacterial colony growth and biodegradation
Microb. Ecol. 63 (2), 339 - 347
Volltext (DOI) - Buchholz, F., Lerchner, J., Mariana, F., Kuhlicke, U., Neu, T.R., Harms, H., Maskow, T., (2012):
Chip-calorimetry provides real time insights into the inactivation of biofilms by predatory bacteria
Biofouling 28 (3), 351 - 362
Volltext (DOI) - Furuno, S., Foss, S., Wild, E., Jones, K.C., Semple, K.T., Harms, H., Wick, L.Y., (2012):
Mycelia promote active transport and spatial dispersion of polycyclic aromatic hydrocarbons
Environ. Sci. Technol. 46 (10), 5463 - 5470
Volltext (DOI) - Furuno, S., Remer, R., Chatzinotas, A., Harms, H., Wick, L.Y., (2012):
Use of mycelia as paths for the isolation of contaminant-degrading bacteria from soil
Microb. Biotechnol. 5 (1), 142 - 148
Volltext (DOI) - Gharasoo, M., Centler, F., Regnier, P., Harms, H., Thullner, M., (2012):
A reactive transport modeling approach to simulate biogeochemical processes in pore structures with pore-scale heterogeneities
Environ. Modell. Softw. 30 (1), 102 - 114
Volltext (DOI) - Günther, S., Koch, C., Hübschmann, T., Röske, I., Müller, R., Bley, T., Harms, H., Müller, S., (2012):
Correlation of community dynamics and process parameters as a tool for the prediction of the stability of wastewater treatment
Environ. Sci. Technol. 46 (1), 84 - 92
Volltext (DOI) - Hanzel, J., Thullner, M., Harms, H., Wick, L.Y., (2012):
Walking the tightrope of bioavailability: growth dynamics of PAH degraders on vapour-phase PAH
Microb. Biotechnol. 5 (1), 79 - 86
Volltext (DOI) - Kopinke, F.-D., Harms, H., (2012):
BuildMoNa's fourth year - a principal investigator's view. Different perspectives on the same matter
BuildMoNa : graduate school Building with Molecules and Nano-objects. Annual report 2011
Universität Leipzig, Leipzig, p. 88 - 89 - Maskow, T., Wolf, K., Kunze, W., Enders, S., Harms, H., (2012):
Rapid analysis of bacterial contamination of tap water using isothermal calorimetry
Thermochim. Acta 543 , 273 - 280
Volltext (DOI) - Przybylski, D., Rohwerder, T., Harms, H., Müller, R.H., (2012):
Third-generation feed stocks for the clean and sustainable biotechnological production of bulk chemicals: synthesis of 2-hydroxyisobutyric acid
Energy Sustain. Soc. 2 , art. 11
Volltext (DOI) - Saleem, M., Fetzer, I., Dormann, C.F., Harms, H., Chatzinotas, A., (2012):
Predator richness increases the effect of prey diversity on prey yield
Nat. Commun. 3 , art. 1305
Volltext (DOI) - Schäfer, F., Schuster, J., Würz, B., Härtig, C., Harms, H., Müller, R.H., Rohwerder, T., (2012):
Synthesis of short-chain diols and unsaturated alcohols from secondary alcohol substrates by the Rieske nonheme mononuclear iron oxygenase MdpJ
Appl. Environ. Microb. 78 (17), 6280 - 6284
Volltext (DOI) - Schulz, S., Giebler, J., Chatzinotas, A., Wick, L.Y., Fetzer, I., Welzl, G., Harms, H., Schloter, M., (2012):
Plant litter and soil type drive abundance, activity and community structure of alkB harbouring microbes in different soil compartments
ISME J. 6 (9), 1763 - 1774
Volltext (DOI) - Schuster, J., Schäfer, F., Hübler, N., Brandt, A., Rosell, M., Härtig, C., Harms, H., Müller, R.H., Rohwerder, T., (2012):
Bacterial degradation of tert-amyl alcohol proceeds via hemiterpene 2-methyl-3-buten-2-ol by employing the tertiary alcohol desaturase function of the Rieske nonheme mononuclear iron oxygenase MdpJ
J. Bacteriol. 194 (5), 972 - 981
Volltext (DOI) - Siegfried, K., Endes, C., Bhuiyan, A.F.M.K., Kuppardt, A., Mattusch, J., van der Meer, J.R., Chatzinotas, A., Harms, H., (2012):
Field testing of arsenic in groundwater samples of Bangladesh using a test kit based on lyophilized bioreporter bacteria
Environ. Sci. Technol. 46 (6), 3281 - 3287
Volltext (DOI) - Solé, M., Müller, I., Pecyna, M.J., Fetzer, I., Harms, H., Schlosser, D., (2012):
Differential regulation by organic compounds and heavy metals of multiple laccase genes in the aquatic hyphomycete Clavariopsis aquatica
Appl. Environ. Microb. 78 (13), 4732 - 4739
Volltext (DOI) - Taubert, M., Vogt, C., Wubet, T., Kleinsteuber, S., Tarkka, M.T., Harms, H., Buscot, F., Richnow, H.-H., von Bergen, M., Seifert, J., (2012):
Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium
ISME J. 6 (12), 2291 - 2301
Volltext (DOI) - Tischer, K., Zeder, M., Klug, R., Pernthaler, J., Schattenhofer, M., Harms, H., Wendeberg, A., (2012):
Fluorescence in situ hybridization (CARD-FISH) of microorganisms in hydrocarbon contaminated aquifer sediment samples
Syst. Appl. Microbiol. 35 (8), 526 - 532
Volltext (DOI) - Yaneva, N., Schuster, J., Schäfer, F., Lede, V., Przybylski, D., Paproth, T., Harms, H., Müller, R.H., Rohwerder, T., (2012):
Bacterial acyl-CoA mutase specifically catalyzes coenzyme B12-dependent isomerization of 2-hydroxyisobutyryl-CoA and (S)-3-hydroxybutyryl-CoA
J. Biol. Chem. 287 (19), 15502 - 15511
Volltext (DOI)
- Banitz, T., Fetzer, I., Johst, K., Wick, L.Y., Harms, H., Frank, K., (2011):
Assessing biodegradation benefits from dispersal networks
Ecol. Model. 222 (14), 2552 - 2560
Volltext (DOI) - Banitz, T., Wick, L.Y., Fetzer, I., Frank, K., Harms, H., Johst, K., (2011):
Dispersal networks for enhancing bacterial degradation in heterogeneous environments
Environ. Pollut. 159 (10), 2781 - 2788
Volltext (DOI) - Bombach, P., Hübschmann, T., Fetzer, I., Kleinsteuber, S., Geyer, R., Harms, H., Müller, S., (2011):
Resolution of natural microbial community dynamics by community fingerprinting, flow cytometry, and trend interpretation analysis
In: Müller, S., Bley, T., (eds.)
High resolution microbial single cell analytics
Adv. Biochem. Eng. Biotechnol. 124
Springer, Berlin, Heidelberg, p. 151 - 181
Volltext (DOI) - Hanzel, J., Thullner, M., Harms, H., Wick, L.Y., (2011):
Microbial growth with vapor-phase substrate
Environ. Pollut. 159 (4), 858 - 864
Volltext (DOI) - Harms, H., Schlosser, D., Wick, L.Y., (2011):
Untapped potential: exploiting fungi in bioremediation of hazardous chemicals
Nat. Rev. Microbiol. 9 (3), 177 - 192
Volltext (DOI) - Kuppardt, A., Harms, H., (2011):
Bakterien zum Nachweis von Arsen in Trinkwasser
Biospektrum 17 (3), 284 - 286
Volltext (DOI) - Maskow, T., Schubert, T., Wolf, A., Buchholz, F., Regestein, L., Buechs, J., Mertens, F., Harms, H., Lerchner, J., (2011):
Potentials and limitations of miniaturized calorimeters for bioprocess monitoring
Appl. Microbiol. Biotechnol. 92 (1), 55 - 66
Volltext (DOI) - Oroszi, S., Jakob, T., Wilhelm, C., Harms, H., Maskow, T., (2011):
Photosynthetic energy conversion in the diatom Phaeodactylum tricornutum. Measuring by calorimetry, oxygen evolution and pulse-amplitude modulated fluorescence
J. Therm. Anal. Calorim. 104 (1), 223 - 231
Volltext (DOI) - Sander, S.G., Hunter, K.A., Harms, H., Wells, M., (2011):
Numerical approach to speciation and estimation of parameters used in modeling trace metal bioavailability
Environ. Sci. Technol. 45 (15), 6388 - 6395
Volltext (DOI) - Schäfer, F., Muzica, L., Schuster, J., Treuter, N., Rosell, M., Harms, H., Müller, R.H., Rohwerder, T., (2011):
Formation of alkenes via degradation of tert-alkyl ethers and alcohols by Aquincola tertiaricarbonis L108 and Methylibium spp.
Appl. Environ. Microb. 77 (17), 5981 - 5987
Volltext (DOI) - Schäwe, R., Fetzer, I., Tönniges, A., Härtig, C., Geyer, W., Harms, H., Chatzinotas, A., (2011):
Evaluation of FT-IR spectroscopy as a tool to quantify bacteria in binary mixed cultures
J. Microbiol. Methods 86 (2), 182 - 187
Volltext (DOI) - Smith, K.E.C., Thullner, M., Wick, L.Y., Harms, H., (2011):
Dissolved organic carbon enhances the mass transfer of hydrophobic organic compounds from nonaqueous phase liquids (NAPLs) into the aqueous phase
Environ. Sci. Technol. 45 (20), 8741 - 8747
Volltext (DOI) - Ziganshin, A.M., Schmidt, T., Scholwin, F., Il'inskaya, O.N., Harms, H., Kleinsteuber, S., (2011):
Bacteria and archaea involved in anaerobic digestion of distillers grains with solubles
Appl. Microbiol. Biotechnol. 89 (6), 2039 - 2052
Volltext (DOI)
- Altenburger, R., Berns, A.E., Bittens, M., Brack, W., Burauel, P., Centler, F., Daus, B., Goss, K.-U., Harms, H., Kopinke, F.-D., Kühnel, D., Liess, M., Mackenzie, K., Miltner, A., Thullner, M., Wennrich, R., Wick, L.Y., (2010):
Chemicals in the environment (CITE). Report of the First Annual Conference of the Helmholtz research topic CITE
UWSF 22 (4), 502 - 506
Volltext (DOI) - Buchholz, F., Harms, H., Maskow, T., (2010):
Biofilm research using calorimetry - a marriage made in heaven?
Biotechnol. J. 5 (12), 1339 - 1350
Volltext (DOI) - Buchholz, F., Wolf, A., Lerchner, J., Mertens, F., Harms, H., Maskow, T., (2010):
Chip calorimetry for fast and reliable evaluation of bactericidal and bacteriostatic treatments of biofilms
Antimicrob. Agents Chemother. 54 (1), 312 - 319
Volltext (DOI) - Deepthike, H.U., Tecon, R., van Kooten, G.K., van der Meer, J.R., Harms, H., Wells, M., Short, J., (2010):
Response to comment on "Unlike PAHs from Exxon Valdez Crude Oil, PAHs from Gulf of Alaska Coals are not Readily Bioavailable"
Environ. Sci. Technol. 44 (6), 2212 - 2213
Volltext (DOI) - Fetzer, I., Jehmlich, N., Vogt, C., Richnow, H.H., Seifert, J., Harms, H., von Bergen, M., Schmidt, F., (2010):
Calculation of partial isotope incorporation into peptides measured by mass spectrometry
BMC Res. Notes 3 , art. 178
Volltext (DOI) - Furuno, S., Päzolt, K., Rabe, C., Neu, T.R., Harms, H., Wick, L.Y., (2010):
Fungal mycelia allow chemotactic dispersal of polycyclic aromatic hydrocarbon-degrading bacteria in water-unsaturated systems
Environ. Microbiol. 12 (6), 1391 - 1398
Volltext (DOI) - Hanzel, J., Harms, H., Wick, L., (2010):
Bacterial chemotaxis along vapor-phase gradients of naphthalene
Environ. Sci. Technol. 44 (24), 9304 - 9310
Volltext (DOI) - Harms, H., Smith, K.E.C., Wick, L.Y., (2010):
Introduction: problems of hydrophobicity/bioavailability
In: Timmis, K.N., McGenity, T., van den Meer, J.R., de Lorenzo, V., (eds.)
Microbial utilization of hydrocarbons, oils and lipids
Handbook of Hydrocarbon and Lipid Microbiology Vol. 2, Part 7
Springer International Publishing, Cham, p. 1439 - 1450
Volltext (DOI) - Harms, H., Smith, K.E.C., Wick, L.Y., (2010):
Microorganism-hydrophobic compound interactions
In: Timmis, K.N., McGenity, T., van den Meer, J.R., de Lorenzo, V., (eds.)
Microbial utilization of hydrocarbons, oils and lipids
Handbook of Hydrocarbon and Lipid Microbiology Vol. 2, Part 7
Springer International Publishing, Cham, p. 1479 - 1490
Volltext (DOI) - Harms, H., Wick, L.Y., Smith, K.E.C., (2010):
Matrix-hydrophobic compound interactions
In: Timmis, K.N., McGenity, T., van den Meer, J.R., de Lorenzo, V., (eds.)
Microbial utilization of hydrocarbons, oils and lipids
Handbook of Hydrocarbon and Lipid Microbiology Vol. 2, Part 7
Springer International Publishing, Cham, p. 1467 - 1478
Volltext (DOI) - Harms, H., Wick, L.Y., (2010):
Determining the tendency of microorganisms to interact with hydrocarbon phases
In: Timmis, K.N., McGenity, T., van den Meer, J.R., de Lorenzo, V., (eds.)
Experimantal protocols and appendices
Handbook of Hydrocarbon and Lipid Microbiology Vol. 5, Part 2
Springer International Publishing, Cham, p. 3631 - 3639
Volltext (DOI) - Hesse, F., Harms, H., Attinger, S., Thullner, M., (2010):
Linear exchange model for the description of mass transfer limited bioavailability at the pore scale
Environ. Sci. Technol. 44 (6), 2064 - 2071
Volltext (DOI) - Hölscher, T., Breuer, U., Adrian, L., Harms, H., Maskow, T., (2010):
Production of the chiral compound (R)-3-Hydroxybutyrate by a genetically engineered methylotrophic bacterium
Appl. Environ. Microb. 76 (16), 5585 - 5591
Volltext (DOI) - Jehmlich, N., Fetzer, I., Seifert, J., Mattow, J., Vogt, C., Harms, H., Thiede, B., Richnow, H.H., von Bergen, M., Schmidt, F., (2010):
Decimal place slope: a fast and precise method for quantifying 13C incorporation levels for detecting the metabolic activity of microbial species
Mol. Cell. Proteomics 9 (6), 1221 - 1227
Volltext (DOI) - Jehmlich, N., Kleinsteuber, S., Vogt, C., Benndorf, D., Harms, H., Schmidt, F., von Bergen, M., Seifert, J., (2010):
Phylogenetic and proteomic analysis of an anaerobic toluene-degrading community
J. Appl. Microbiol. 109 (6), 1937 - 1945
Volltext (DOI) - Jousset, A., Lara, E., Nikolausz, M., Harms, H., Chatzinotas, A., (2010):
Application of the denaturing gradient gel electrophoresis (DGGE) technique as an efficient diagnostic tool for ciliate communities in soil
Sci. Total Environ. 408 (5), 1221 - 1225
Volltext (DOI) - Kuppardt, A., Vetterlein, D., Harms, H., Chatzinotas, A., (2010):
Visualisation of gradients in arsenic concentrations around individual roots of Zea mays L. using agar-immobilized bioreporter bacteria
Plant Soil 329 (1-2), 295 - 306
Volltext (DOI) - Leibeling, S., Schmidt, F., Jehmlich, N., von Bergen, M., Müller, R.H., Harms, H., (2010):
Declining capacity of starving Delftia acidovorans MC1 to degrade phenoxypropionate herbicides correlates with oxidative modification of the initial enzyme
Environ. Sci. Technol. 44 (10), 3793 - 3799
Volltext (DOI) - Leibeling, S., Taubert, M., Seifert, J., von Bergen, M., Harms, H., Müller, R.H., (2010):
Adaptation of the herbicide-degrading strain Delftia acidovorans MC1 through carbonylation of RdpA as key enzyme
J. Biotechnol. 150 (Suppl. 1), S262 - S263
Volltext (DOI) - Mariana, F., Buchholz, F., Harms, H., Yong, Z., Yao, J., Maskow, T., (2010):
Isothermal titration calorimetry - A new method for the quantification of microbial degradation of trace pollutants
J. Microbiol. Methods 82 (1), 42 - 48
Volltext (DOI) - Maskow, T., Kemp, R., Buchholz, F., Schubert, T., Kiesel, B., Harms, H., (2010):
What heat is telling us about microbial conversions in nature and technology: from chip- to megacalorimetry
Microb. Biotechnol. 3 (3), 269 - 284
Volltext (DOI) - Maskow, T., Kiesel, B., Schubert, T., Yong, Z., Harms, H., Yao, J., (2010):
Calorimetric real time monitoring of lambda prophage induction
J. Virol. Methods 168 (1-2), 126 - 132
Volltext (DOI) - Müller, S., Harms, H., Bley, T., (2010):
Origin and analysis of microbial population heterogeneity in bioprocesses
Curr. Opin. Biotechnol. 21 (1), 100 - 113
Volltext (DOI) - Przybylski, D., Yaneva, N., Harms, H., Rohwerder, T., Müller, R.H., (2010):
Functional expression of 2-hydroxyisobutyryl-coa mutase in different E. coli derivatives
J. Biotechnol. 150 (Suppl. 1), S258
Volltext (DOI) - Schäfer, F., Harms, H., Rohwerder, T., Müller, R.H., (2010):
Microbial synthesis of chiral alcohols using a novel monooxygenase
J. Biotechnol. 150 (Suppl. 1), S356
Volltext (DOI) - Sträuber, H., Hübschmann, T., Jehmlich, N., Schmidt, F., von Bergen, M., Harms, H., Müller, S., (2010):
NBDT (3-(N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino)-3-toluene) - A novel fluorescent dye for studying mechanisms of toluene uptake into vital bacteria
Cytom. Part A 77A (2), 113 - 120
Volltext (DOI) - Wick, L.Y., Buchholz, F., Fetzer, I., Kleinsteuber, S., Härtig, C., Shi, L., Miltner, A., Harms, H., Pucci, G.N., (2010):
Responses of soil microbial communities to weak electric fields
Sci. Total Environ. 408 (20), 4886 - 4893
Volltext (DOI) - Wick, L.Y., Furuno, S., Harms, H., (2010):
Fungi as transport vectors for contaminants and contaminant-degrading bacteria
In: Timmis, K.N., McGenity, T., van den Meer, J.R., de Lorenzo, V., (eds.)
Microbial utilization of hydrocarbons, oils and lipids
Handbook of Hydrocarbon and Lipid Microbiology Vol. 2, Part 8
Springer International Publishing, Cham, p. 1555 - 1561
Volltext (DOI)
- Deepthike, H.U., Tecon, R., van Kooten, G., van der Meer, J.R., Harms, H., Wells, M., Short, J., (2009):
Unlike PAHs from Exxon Valdez Crude Oil, PAHs from Gulf of Alaska Coals are not readily bioavailable
Environ. Sci. Technol. 43 (15), 5864 - 5870
Volltext (DOI) - Günther, S., Trutnau, M., Kleinsteuber, S., Hause, G., Bley, T., Röske, I., Harms, H., Müller, S., (2009):
Dynamics of polyphosphate-accumulating bacteria in wastewater treatment plant microbial communities detected via DAPI (4',6'-diamidino-2-phenylindole) and tetracycline labeling
Appl. Environ. Microb. 75 (7), 2111 - 2121
Volltext (DOI) - Heine, F., Stahl, F., Sträuber, H., Wiacek, C., Benndorf, D., Repenning, C., Schmidt, F., Scheper, T., von Bergen, M., Harms, H., Müller, S., (2009):
Prediction of flocculation ability of brewing yeast inoculates by flow cytometry, proteome analysis, and mRNA profiling
Cytom. Part A 75A (2), 140 - 147
Volltext (DOI) - Kampara, M., Thullner, M., Harms, H., Wick, L.Y., (2009):
Impact of cell density on microbially induced stable isotope fractionation
Appl. Microbiol. Biotechnol. 81 (5), 977 - 985
Volltext (DOI) - Kuppardt, A., Chatzinotas, A., Breuer, U., van der Meer, J.R., Harms, H., (2009):
Optimization of preservation conditions of As (III) bioreporter bacteria
Appl. Microbiol. Biotechnol. 82 (4), 785 - 792
Volltext (DOI) - Müller, S., Vogt, C., Laube, M., Harms, H., Kleinsteuber, S., (2009):
Community dynamics within a bacterial consortium during growth on toluene under sulfate-reducing conditions
FEMS Microbiol. Ecol. 70 (3), 586 - 596
Volltext (DOI) - Schleinitz, K.M., Schmeling, S., Jehmlich, N., von Bergen, M., Harms, H., Kleinsteuber, S., Vogt, C., Fuchs, G., (2009):
Phenol degradation in the strictly anaerobic iron-reducing bacterium Geobacter metallireducens GS-15
Appl. Environ. Microb. 75 (12), 3912 - 3919
Volltext (DOI) - Smith, K.E.C., Thullner, M., Wick, L.Y., Harms, H., (2009):
Sorption to humic acids enhances polycyclic aromatic hydrocarbon biodegradation
Environ. Sci. Technol. 43 (19), 7205 - 7211
Volltext (DOI) - Sträuber, H., Hübschmann, T., Harms, H., Müller, S., (2009):
Screening of potential toluene degraders in communities using a novel fluorescent toluene analogue and flow cytometry
Cytom. Part A 75A (8), 717
Volltext (DOI) - Thullner, M., Kampara, M., Richnow, H.H., Harms, H., Wick, L.Y., (2009):
Stable isotope fractionation as a tool to determine substrate bioavailability
Geochim. Cosmochim. Acta 73 (13 Suppl.), A1329
Volltext (DOI)
- Günther, S., Hübschmann, T., Rudolf, M., Eschenhagen, M., Röske, I., Harms, H., Müller, S., (2008):
Fixation procedures for flow cytometric analysis of environmental bacteria
J. Microbiol. Methods 75 (1), 127 - 134
Volltext (DOI) - Kampara, M., Thullner, M., Richnow, H.H., Harms, H., Wick, L.Y., (2008):
Impact of bioavailability restrictions on microbially induced stable isotope fractionation. 2. Experimental evidence
Environ. Sci. Technol. 42 (17), 6552 - 6558
Volltext (DOI) - Kleinsteuber, S., Müller, F.D., Chatzinotas, A., Wendt-Potthoff, K., Harms, H., (2008):
Diversity and in situ quantification of Acidobacteria subdivision 1 in an acidic mining lake
FEMS Microbiol. Ecol. 63 (1), 107 - 117
Volltext (DOI) - Kleinsteuber, S., Schleinitz, K.M., Breitfeld, J., Harms, H., Richnow, H.H., Vogt, C., (2008):
Molecular characterization of bacterial communities mineralizing benzene under sulfate-reducing conditions
FEMS Microbiol. Ecol. 66 (1), 143 - 157
Volltext (DOI) - Kohlmeier, S., Mancuso, M., Deepthike, U., Tecon, R., van der Meer, J.R., Harms, H., Wells, M., (2008):
Comparison of naphthalene bioavailability determined by whole-cell biosensing and availability determined by extraction with Tenax
Environ. Pollut. 156 (3), 803 - 808
Volltext (DOI) - Lerchner, J., Wolf, A., Buchholz, F., Mertens, F., Neu, T.R., Harms, H., Maskow, T., (2008):
Miniaturized calometry - a new method for real-time biofilm activity analysis
J. Microbiol. Methods 74 (2-3), 74 - 81
Volltext (DOI) - Maskow, T., Röllich, A., Fetzer, I., Ackermann, J.-U., Harms, H., (2008):
On-line monitoring of lipid storage in yeasts using impedance spectroscopy
J. Biotechnol. 135 (1), 64 - 70
Volltext (DOI) - Maskow, T., Röllich, A., Fetzer, I., Yao, J., Harms, H., (2008):
Observation of non-linear biomass-capacitance correlations: reasons and implications for bioprocess control
Biosens. Bioelectron. 24 (1), 123 - 128
Volltext (DOI) - Mothes, G., Schubert, T., Harms, H., Maskow, T., (2008):
Biotechnological coproduction of compatible solutes and polyhydroxyalkanoates using the genus Halomonas
Eng. Life Sci. 8 (6), 658 - 662
Volltext (DOI) - Müller, R.H., Rohwerder, T., Harms, H., (2008):
Degradation of fuel oxygenates and their main intermediates by Aquincola tertiaricarbonis L108
Microbiology-(UK) 154 (5), 1414 - 1421
Volltext (DOI) - Pawelczyk, S., Abraham, W.-R., Harms, H., Müller, S., (2008):
Community-based degradation of 4-chorosalicylate tracked on the single cell level
J. Microbiol. Methods 75 (1), 117 - 126
Volltext (DOI) - Peitzsch, M., Kiesel, B., Harms, H., Maskow, T., (2008):
Real time analysis of Escherichia coli biofilms using calorimetry
Chem. Eng. Process. 47 (6), 1000 - 1006
Volltext (DOI) - Shi, L., Harms, H., Wick, L.Y., (2008):
Electroosmotic flow stimulates the release of alginate-bound phenanthrene
Environ. Sci. Technol. 42 (6), 2105 - 2110
Volltext (DOI) - Shi, L., Müller, S., Harms, H., Wick, L.Y., (2008):
Factors influencing the electrokinetic dispersion of PAH-degrading bacteria in a laboratory model aquifer
Appl. Microbiol. Biotechnol. 80 (3), 507 - 515
Volltext (DOI) - Shi, L., Müller, S., Harms, H., Wick, L.Y., (2008):
Effect of electrokinetic transport on the vulnerability of PAH-degrading bacteria in a model aquifer
Environ. Geochem. Health 30 (2), 177 - 182
Volltext (DOI) - Shi, L., Müller, S., Loffhagen, N., Harms, H., Wick, L.Y., (2008):
Activity and viability of polycyclic aromatic hydrocarbon-degrading Sphingomonas sp. LB126 in a DC-electrical field typical for electrobioremediation measures
Microb. Biotechnol. 1 (1), 53 - 61
Volltext (DOI) - Solé, M., Chatzinotas, A., Sridhar, K.R., Harms, H., Krauss, G., (2008):
Improved coverage of fungal diversity in polluted groundwaters by semi-nested PCR
Sci. Total Environ. 406 (1-2), 324 - 330
Volltext (DOI) - Solé, M., Fetzer, I., Wennrich, R., Sridhar, K.R., Harms, H., Krauss, G., (2008):
Aquatic hyphomycete communities as potential bioindicators for assessing anthropogenic stress
Sci. Total Environ. 389 (2-3), 557 - 565
Volltext (DOI) - Thullner, M., Kampara, M., Richnow, H.H., Harms, H., Wick, L.Y., (2008):
Impact of bioavailability restrictions on microbially induced stable isotope fractionation. 1. Theoretical calculation
Environ. Sci. Technol. 42 (17), 6544 - 6551
Volltext (DOI) - Wackwitz, A., Harms, H., Chatzinotas, A., Breuer, U., Vogne, C., van der Meer, J.R., (2008):
Internal arsenite bioassay calibration using multiple bioreporter cell lines
Microb. Biotechnol. 1 (2), 149 - 157
Volltext (DOI)
- Achilles, J., Repenning, C., Harms, H., Stahl, F., Müller, S., (2007):
Physiology of living individual Saccharomyces cerevisiae cells - Investigation on cellular and molecular level
Cytom. Part A 71A (9), 760
Volltext (DOI) - Achilles, J., Stahl, F., Harms, H., Müller, S., (2007):
Isolation of intact RNA from cytometrically sorted Saccharomyces cerevisiae for the analysis of intrapopulation diversity of gene expression
Nat. Protoc. 2 (9), 2203 - 2211
Volltext (DOI) - Benndorf, D., Balcke, G.U., Harms, H., von Bergen, M., (2007):
Functional metaproteome analysis of protein extracts from contaminated soil and groundwater
ISME J. 1 (3), 224 - 234
Volltext (DOI) - Buchholz, F., Wick, L.Y., Harms, H., Maskow, T., (2007):
The kinetics of polycyclic aromatic hydrocarbon (PAH) biodegradation assessed by isothermal titration calorimetry (ITC)
Thermochim. Acta 458 (1-2), 47 - 53
Volltext (DOI) - Busam, S., McNabb, M., Wackwitz, A., Senevirathna, W., Beggah, S., van der Meer, J., Wells, M., Breuer, U., Harms, H., (2007):
Artificial neural network study of whole-cell bacterial bioreporter response determined using fluorescence flow cytometry
Anal. Chem. 79 (23), 9107 - 9114
Volltext (DOI) - Günther, S., Geyer, W., Harms, H., Müller, S., (2007):
Fluorogenic surrogate substrates for toluene-degrading bacteria - are they useful for activity analysis?
J. Microbiol. Methods 70 (2), 272 - 283
Volltext (DOI) - Harms, H., (2007):
Biosensing of heavy metals
In: Nies, D.H., Silver, S., (eds.)
Molecular microbiology of heavy metals
Microbiology Monographs 6
Springer, Berlin, Heidelberg, New York, p. 143 - 157
Volltext (DOI) - Harvey, R.W., Harms, H., Landkamer, L., (2007):
Transport of microorganisms in the terrestrial subsurface: in situ and laboratory methods
In: Hurst, C.J., Crawford, R.L., Garland, J.L., Lipson, D.A., Mills, A.L., (eds.)
Manual of environmental microbiology. 3rd ed.
ASM Press, Washington, DC, p. 872 - 897 - Heine, F., Wiacek, C., Benndorf, D., Sträuber, H., Stahl, F., von Bergen, M., Harms, H., Müller, S., (2007):
Evidence of flocculation in brewing yeast strains by flow cytometry, proteome and mRNA profiling
Cytom. Part A 71A (9), 761
Volltext (DOI) - Heine, F., Wiacek, C., Benndorf, D., Sträuber, H., Stahl, F., von Bergen, M., Harms, H., Müller, S., (2007):
Evidence of flocculation in brewing yeast strains by flow cytometry, proteome and mRNA profiling
Cytom. Part A 71A (7), 513
Volltext (DOI) - Hübschmann, T., Vogt, C., Till, S., Rohwerder, T., Sand, W., Harms, H., Müller, S., (2007):
Detection of sulfur microparticles in bacterial cultures by flow cytometry
Eng. Life Sci. 7 (4), 403 - 407
Volltext (DOI) - Kohlmeier, S., Mancuso, M., Tecon, R., Harms, H., van der Meer, J.R., Wells, M., (2007):
Bioreporters: gfp versus lux revisited and single-cell response
Biosens. Bioelectron. 22 (8), 1578 - 1585
Volltext (DOI) - Lara, E., Berney, C., Ekelund, F., Harms, H., Chatzinotas, A., (2007):
Molecular comparison of cultivable protozoa from a pristine and a polycyclic aromatic hydrocarbon polluted site
Soil Biol. Biochem. 39 (1), 139 - 148
Volltext (DOI) - Lara, E., Berney, C., Harms, H., Chatzinotas, A., (2007):
Cultivation-independent analysis reveals a shift in ciliate 18S rRNA gene diversity in a polycyclic aromatic hydrocarbon-polluted soil
FEMS Microbiol. Ecol. 62 (3), 365 - 373
Volltext (DOI) - Loffhagen, N., Härtig, C., Geyer, W., Voyevoda, M., Harms, H., (2007):
Competition between cis, trans and cyclopropane fatty acid formation and its impact on membrane fluidity
Eng. Life Sci. 7 (1), 67 - 74
Volltext (DOI) - Müller, R.H., Rohwerder, T., Harms, H., (2007):
Carbon conversion efficiency and limits of productive bacterial degradation of methyl tert-butyl ether and related compounds
Appl. Environ. Microb. 73 (6), 1783 - 1791
Volltext (DOI) - Müller, R.H., Rohwerder, T., Harms, H., (2007):
A stoichiometric and kinetic model for the growth-associated microbial degradation of MTBE/ETBE
In: Bastiaens, L., (ed.)
MTBE & other fuel oxygenates : proceedings of the 3rd European Conference, Antwerp, June 7-8, 2007
Vito, Mol, p. 33 - 37 - Parsons, J., Belzunce Segarra, M.J., Cornelissen, G., Gustafsson, Ö., Harms, H., Janssen, C.R., Kukkonen, J., van Noort, P., Ortega Calvo, J.J., Solaun Etxeberria, O., (2007):
Characterisation of contaminants in sediments - effects of bioavailability on impact
In: Barceló, D., Petrovic, M., (eds.)
Sediment quality and impact assessment of pollutants
Sustainable Management of Sediment Resources Vol. 1
Elsevier, Amsterdam, p. 35 - 60
Volltext (DOI) - Ramig, S., Vogt, C., Kleinsteuber, S., Hübschmann, T., Harms, H., Müller, S., (2007):
Populations profiles of the BTEX degrading enrichment culture L-D1 under balanced and non balanced growth conditions
Cytom. Part A 71A (9), 760
Volltext (DOI) - Santos, P.M., Roma, V., Benndorf, D., von Bergen, M., Harms, H., Sá-Correia, I., (2007):
Mechanistic insights into the global response to phenol in the phenol-biodegrading strain Pseudomonas sp. M1 revealed by quantitative proteomics
OMICS 11 (3), 233 - 251
Volltext (DOI) - Schäfer, F., Breuer, U., Benndorf, D., von Bergen, M., Harms, H., Müller, R.H., (2007):
Growth of Aquincola tertiaricarbonis L108 on tert-butyl alcohol leads to the induction of a phthalate dioxygenase-related protein and its associated oxidoreductase subunit
Eng. Life Sci. 7 (5), 512 - 519
Volltext (DOI) - Schubert, T., Breuer, U., Harms, H., Maskow, T., (2007):
Calorimetric bioprocess monitoring by small modifications to a standard bench-scale bioreactor
J. Biotechnol. 130 (1), 24 - 31
Volltext (DOI) - Schubert, T., Maskow, T., Benndorf, D., Harms, H., Breuer, U., (2007):
Continuous synthesis and excretion of the compatible solute ectoine by a transgenic, nonhalophilic bacterium
Appl. Environ. Microb. 73 (10), 3343 - 3347
Volltext (DOI) - Schumer, D., Breuer, U., Harms, H., Maskow, T., (2007):
Thermokinetic analysis reveals the complex growth and haloadaptation pattern of the non-conventional yeast Debaryomyces hansenii
Eng. Life Sci. 7 (4), 322 - 330
Volltext (DOI) - Semple, K.T., Doick, K.J., Wick, L.Y., Harms, H., (2007):
Microbial interactions with organic contaminants in soil: definitions, processes and measurement
Environ. Pollut. 150 (1), 166 - 176
Volltext (DOI) - Shi, L., Günther, S., Hübschmann, T., Wick, L.Y., Harms, H., Müller, S., (2007):
Limits of propidium iodide as a cell viability indicator for environmental bacteria
Cytom. Part A 71A (8), 592 - 598
Volltext (DOI) - Shi, L., Wick, L.Y., Günther, S., Harms, H., Müller, S., (2007):
Flow cytometry analysis of the viability of pollutant degrading bacteria exposed to weak electric fields
Cytom. Part A 71A (1), 52 - 53
Volltext (DOI) - Wick, L.Y., Remer, R., Würz, B., Reichenbach, J., Braun, S., Schäfer, F., Harms, H., (2007):
Effect of fungal hyphae on the access of bacteria to phenanthrene in soil
Environ. Sci. Technol. 41 (2), 500 - 505
Volltext (DOI) - Wick, L.Y., Shi, L., Harms, H., (2007):
Electro-bioremediation of hydrophobic organic soil-contaminants: a review of fundamental interactions
Electrochim. Acta 52 (10), 3441 - 3448
Volltext (DOI)
- Achilles, J., Harms, H., Müller, S., (2006):
Analysis of living S. cerevisiae cell states - a three color approach
Cytom. Part A 69A (3), 173 - 177
Volltext (DOI) - Benndorf, D., Thiersch, M., Loffhagen, N., Kunath, C., Harms, H., (2006):
Pseudomonas putida KT2440 responds specifically to chlorophenoxy herbicides and their initial metabolites
Proteomics 6 (11), 3319 - 3329
Volltext (DOI) - Boenigk, J., Pfandl, K., Garstecki, T., Harms, H., Novarino, G., Chatzinotas, A., (2006):
Evidence for geographic isolation and signs of endemism within a protistan morphospecies
Appl. Environ. Microb. 72 (8), 5159 - 5164
Volltext (DOI) - Breuer, U., Harms, H., (2006):
Debaryomyces hansenii - an extremophilic yeast with biotechnological potential
Yeast 23 (6), 415 - 437
Volltext (DOI) - Harms, H., Wells, M., van der Meer, J.R., (2006):
Whole-cell living biosensors - are they ready for environmental application?
Appl. Microbiol. Biotechnol. 70 (3), 273 - 280
Volltext (DOI) - Harms, H., Wick, L.Y., (2006):
Dispersing pollutant-degrading bacteria in contaminated soil without touching it
Eng. Life Sci. 6 (3), 252 - 260
Volltext (DOI) - Kaufmann, K., Chapman, S.J., Campbell, C.D., Harms, H., Höhener, P., (2006):
Miniaturized test system for soil respiration induced by volatile pollutants
Environ. Pollut. 140 (2), 269 - 278
Volltext (DOI) - Kleinsteuber, S., Riis, V., Fetzer, I., Harms, H., Müller, S., (2006):
Population dynamics within a microbial consortium during growth on diesel fuel in saline environments
Appl. Environ. Microb. 72 (5), 3531 - 3542
Volltext (DOI) - Loffhagen, N., Härtig, C., Harms, H., (2006):
Impact of membrane fatty acid composition on the uncoupling sensitivity of the energy conservation of Comamonas testosteroni ATCC 17454
Appl. Microbiol. Biotechnol. 70 (5), 618 - 624
Volltext (DOI) - Maskow, T., Harms, H., (2006):
Real time insights into bioprocesses using calorimetry: state of the art and potential
Eng. Life Sci. 6 (3), 266 - 277
Volltext (DOI) - Maskow, T., Lerchner, J., Peitzsch, M., Harms, H., Wolf, G., (2006):
Chip calorimetry for the monitoring of whole cell biotransformation
J. Biotechnol. 122 (4), 431 - 442
Volltext (DOI) - Maskow, T., Müller, S., Lösche, A., Harms, H., Kemp, R., (2006):
Control of continuous polyhydroxybutyrate synthesis using calorimetry and flow cytometry
Biotechnol. Bioeng. 93 (3), 541 - 552
Volltext (DOI) - Westendorf, A., Benndorf, D., Pribyl, T., Harms, H., Müller, R.H., (2006):
Kinetic traits and enzyme form patterns of (R)-2-(2,4-Dichlorophenoxy)propionate/a-ketoglutarate dioxygenase (RdpA) after expression in different bacterial strains
Eng. Life Sci. 6 (6), 552 - 559
Volltext (DOI)
- Harms, H., Rime, J., Leupin, O., Hug, S.J., van der Meer, J.R., (2005):
Effect of groundwater composition on arsenic detection by bacterial biosensors
Microchim. Acta 151 (3-4), 217 - 222
Volltext (DOI) - Harms, H., van der Meer, J.R., (2005):
Bakterielle Bioreporter für die Arsenanalytik im Trinkwasser
Laborwelt 6 (3), 22 - 24 - Härtig, C., Loffhagen, N., Harms, H., (2005):
Formation of trans fatty acids is not involved in growth-linked membrane adaptation of Pseudomonas putida
Appl. Environ. Microb. 71 (4), 1915 - 1922
Volltext (DOI) - Johnsen, A.R., Wick, L.Y., Harms, H., (2005):
Principles of microbial PAH-degradation in soil
Environ. Pollut. 133 (1), 71 - 84
Volltext (DOI) - Kohlmeier, S., Smits, T.H.M., Ford, R.M., Keel, C., Harms, H., Wick, L.Y., (2005):
Taking the fungal highway: mobilization of pollutant-degrading bacteria by fungi
Environ. Sci. Technol. 39 (12), 4640 - 4646
Volltext (DOI) - Wells, M., Gösch, M., Harms, H., van der Meer, J.R., (2005):
Response characteristics of arsenic-sensitive bioreporters expressing the gfp reporter gene
Microchim. Acta 151 (3-4), 209 - 216
Volltext (DOI) - Wells, M., Gösch, M., Rigler, R., Harms, H., Lasser, T., van der Meer, J.R., (2005):
Ultrasensitive reporter protein detection in genetically engineered bacteria
Anal. Chem. 77 (9), 2683 - 2689
Volltext (DOI) - Wells, M., Wick, L.Y., Harms, H., (2005):
Model polymer release system study of PAH bioaccessibility: the relationship between "Rapid" release and bioaccessibility
Environ. Sci. Technol. 39 (4), 1055 - 1063
Volltext (DOI)
- Balazs, D.J., Triandafillu, K., Wood, P., Chevolot, Y., van Delden, C., Harms, H., Hollenstein, C., Mathieu, H.J., (2004):
Inhibition of bacteriol adhesion on PVC endotracheal tubes by RF-oxygen glow discharge, sodium hydroxide and silver nitrate treatments
Biomaterials 25 (11), 2139 - 2151
Volltext (DOI) - Gremion, F., Chatzinotas, A., Kaufmann, K., Von Sigler, W., Harms, H., (2004):
Impacts of heavy metal contamination and photoremediation on a microbial community during a twelve-month microcosm experiment
FEMS Microbiol. Ecol. 48 (2), 273 - 283
Volltext (DOI) - Harms, H., Wick, L.Y., (2004):
Mobilisation of organic compounds and iron by microorganisms
In: van Leeuwen, H.P., Köster, W., (eds.)
Physicochemical kinetics and transport at biointerfaces
IUPAC Series on Analytical and Physical Chemistry of Environmental Systems 9
Wiley, Chichester, p. 401 - 444 - Kaufmann, K., Christophersen, M., Buttler, A., Harms, H., Höhener, P., (2004):
Microbial community response to petroleum hydrocarbon contamination in the unsaturated zone at the experimental field site Værløse, Denmark
FEMS Microbiol. Ecol. 48 (3), 387 - 399
Volltext (DOI) - Semple, K.T., Doick, K.J., Jones, K.C., Burauel, P., Craven, A., Harms, H., (2004):
Defining bioavailability and bioaccessibility of contaminated soil and sediment is complicated
Environ. Sci. Technol. 38 (12), 229A - 231A
Volltext (DOI) - Wells, M., Wick, L.Y., Harms, H., (2004):
Perspectives on modeling the release of hydrophobic organic contaminants drawn from model polymer release systems
J. Mater. Chem. 14 (15), 2461 - 2472
Volltext (DOI) - Wick, L.Y., Mattle, P.A., Wattiau, P., Harms, H., (2004):
Electrokinetic transport of PAH-degrading bacteria in model aquifers and soil
Environ. Sci. Technol. 38 (17), 4596 - 4602
Volltext (DOI)
- Balazs, D.J., Triandafillu, K., Chevolot, Y., Aronsson, B.-O., Harms, H., Descouts, P., Mathieu, H.J., (2003):
Surface modification of PVC endotracheal tubes by oxygen glow discharge to reduce bacterial adhesion
Surf. Interface Anal. 35 (3), 301 - 309
Volltext (DOI) - Chapman, S., Buttler, A., Francez, A., Laggoun-Defarge, F., Vasander, H., Schloter, M., Combe, J., Grosvernier, P., Harms, H., Epron, D., Gilbert, D., Mitchell, E., (2003):
Exploitation of northern peatlands and biodiversity maintenance: a conflict between economy and ecology
Front. Ecol. Environ. 1 (10), 525 - 532
Volltext (DOI) - Gremion, F., Chatzinotas, A., Harms, H., (2003):
Comparative 16S rDNA and 16S rRNA sequence analysis indicates that Actinobacteria might be a dominant part of the metabolically active bacteria in heavy metal-contaminated bulk and rhizosphere soil
Environ. Microbiol. 5 (10), 896 - 907
Volltext (DOI) - Harms, H., (2003):
Polymer interactions in bacterial adhesion to mineral surfaces
Abstr. Paper Am. Chem. Soc. 225 , U797 - Harms, H., Volkland, H.P., Repphun, G., Hiltpolt, A., Wanner, O., Zehnder, A.J.B., (2003):
Action of chelators on solid iron in phosphate-containing aqueous solutions
Corrosion Sci. 45 (8), 1717 - 1732
Volltext (DOI) - Höhener, P., Duwig, C., Pasteris, G., Kaufmann, K., Dakhel, N., Harms, H., (2003):
Biodegradation of petroleum hydrocarbon vapors: laboratory studies on rates and kinetics in unsaturated alluvial sand
J. Contam. Hydrol. 66 (1-2), 93 - 115
Volltext (DOI) - Medilanski, E., Wick, L.Y., Wanner, O., Harms, H., (2003):
Mutual influences of Pseudomonas aeruginosa and Desulfovibrio desulfuricans on their adhesion to stainless steel
Biofouling 19 (2), 125 - 132
Volltext (DOI) - Smits, T.H.M., Wick, L.Y., Harms, H., Keel, C., (2003):
Characterization of the surface hydrophobicity of filamentous fungi
Environ. Microbiol. 5 (2), 85 - 91
Volltext (DOI) - Stocker, J., Balluch, D., Gsell, M., Harms, H., Feliciano, J., Daunert, S., Malik, K.A., van der Meer, J.R., (2003):
Development of a set of simple bacterial biosensors for quantitative and rapid measurements of arsenite and arsenate in potable water
Environ. Sci. Technol. 37 (20), 4743 - 4750
Volltext (DOI) - Triandafillu, K., Balazs, D.J., Aronsson, B.-O., Descouts, P., Quoc, P.T., van Delden, C., Mathieu, H.J., Harms, H., (2003):
Adhesion of Pseudomonas aeruginosa strains to untreated and oxygen-plasma treated poly(vinyl chloride) (PVC) from endotracheal intubation devices
Biomaterials 24 (8), 1507 - 1518
Volltext (DOI) - Wick, L.Y., Pasche, N., Bernasconi, S.M., Pelz, O., Harms, H., (2003):
Characterization of multiple-substrate utilization by anthracene-degrading Mycobacterium frederiksbergense LB501T
Appl. Environ. Microb. 69 (10), 6133 - 6142
Volltext (DOI) - Wick, L.Y., Pelz, O., Bernasconi, S.M., Andersen, N., Harms, H., (2003):
Influence of the growth substrate on ester-linked phospho- and glycolipid fatty acids of PAH-degrading Mycobacterium sp. LB501T
Environ. Microbiol. 5 (8), 672 - 680
Volltext (DOI) - Wiegel, S., Harms, H., Stachel, B., Brockmeyer, R., Schmidt, R., Aulinger, W., von Tümpling, W., (2003):
Arzneistoffe in Elbe und Saale
Arbeitsgemeinschaft für die Reinhaltung der Elbe, Potsdam, 123 pp.
- Medilanski, E., Kaufmann, K., Wick, L.Y., Wanner, O., Harms, H., (2002):
Influence of the surface topography of stainless steel on bacterial adhesion
Biofouling 18 (3), 193 - 203
Volltext (DOI) - Reimann, C., Ginet, N., Michel, L., Keel, C., Michaux, P., Krishnapillai, V., Zala, M., Heurlier, K., Triandafillu, K., Harms, H., Defago, G., Haas, D., (2002):
Genetically programmed autoinducer destruction reduces virulence gene expression and swarming motility in Pseudomonas aeruginosa PAO1
Microbiology-(UK) 148 (4), 923 - 932
Volltext (DOI) - Wick, L.Y., de Munain, A.R., Springael, D., Harms, H., (2002):
Responses of Mycobacterium sp. LB501T to the low bioavailability of solid anthracene
Appl. Microbiol. Biotechnol. 58 (3), 378 - 385
Volltext (DOI) - Wick, L.Y., de Munain, A.R., Springael, D., Harms, H., (2002):
Erratum to "Responses of Mycobacterium sp. LB501T to the low bioavailability of solid anthracene" (vol 58, pg 378, 2002)
Appl. Microbiol. Biotechnol. 58 (5), 683 - 683
Volltext (DOI) - Wick, L.Y., Wattiau, P., Harms, H., (2002):
Influence of the growth substrate on the mycolic acid profiles of mycobacteria
Environ. Microbiol. 4 (10), 612 - 616
Volltext (DOI)
- Garcia, J.M., Wick, L.Y., Harms, H., (2001):
Influence of the nonionic surfactant Brij 35 on the bioavailability of solid and sorbed dibenzofuran
Environ. Sci. Technol. 35 (10), 2033 - 2039
Volltext (DOI) - Jaspers, M.C.M., Meier, C., Zehnder, A.J.B., Harms, H., van der Meer, J.R., (2001):
Measuring mass transfer processes of octane with the help of an alkS-alkB::gfp-tagged Escherichia coli
Environ. Microbiol. 3 (8), 512 - 524
Volltext (DOI) - Power, M.E., van der Meer, J.R., Harms, H., Wanner, O., (2001):
Colonization of aerobic biofilms by sulfate-reducing bacteria
Biofouling 17 (4), 275 - 288
Volltext (DOI) - Simoni, S.F., Schäfer, A., Harms, H., Zehnder, A.J.B., (2001):
Factors affecting mass transfer limited biodegradation in saturated porous media
J. Contam. Hydrol. 50 (1-2), 99 - 120
Volltext (DOI) - Volkland, H.P., Harms, H., Kaufmann, K., Wanner, O., Zehnder, A.J.B., (2001):
Repair of damaged vivianite coatings on mild steel using bacteria
Corrosion Sci. 43 (11), 2135 - 2146
Volltext (DOI) - Volkland, H.P., Harms, H., Wanner, O., Zehnder, A.J.B., (2001):
Corrosion protection by anaerobiosis
Water Sci. Technol. 44 (8), 103 - 106
Volltext (URL) - Wick, L.Y., Colangelo, T., Harms, H., (2001):
Kinetics of mass transfer-limited bacterial growth on solid PAHs
Environ. Sci. Technol. 35 (2), 354 - 361
Volltext (DOI)