Prof. Dr. Hauke Harms
Head of the Department of Environmental Microbiology
Contact
Prof. Dr. Hauke Harms
Department Head
Department of Environmental Microbiology
Helmholtz-Centre
for
Environmental Research - UFZ
Permoserstr. 15, 04318 Leipzig, Germany
Phone +49 341 235-1260
hauke.harms@ufz.de
CV / Scientific Career
1988
Diploma in Biology, University of Hamburg
1988 - 1990
PhD, University of Hamburg; subject 'Bacterial Degradation of Dioxin'
1991 - 1993
Long-Term Fellow of European Environmental Research Organisation (EERO) at the Agricultural University of Wageningen, The Netherlands
1993 - 1998
Oberassistent at the Swiss Federal Institute of Technology (ETH) Zurich and head of a research team at the Swiss Federal Institute of Environmental Science and Technology (EAWAG)
1998 - 2003
Assistant professor for Soil Microbiology at the Swiss Federal Institute of Technology Lausanne (EPFL)
since 2004
Professor for Environmental Microbiology at the University of Leipzig and Head of the Department of Environmental Microbiology at the Helmholtz Centre for Environmental Research - UFZ, Leipzig
since 2013
Spokesperson of the Helmholtz Research Programme ‘Terrestrial Environment’
Research interests
I am interested in the ecology and ecophysiology of microbial communities involved in Ecosystem services such as the conversion of pollutants and biomass in soil, water and technical systems. It is my goal to address these processes from an ecological perspective and to propose ecological principles for environmental biotechnology development. Special emphasis is put on the link between microbial diversity in structured habitats and the reliability of their functioning. An ultimate goal is to propose biotechnological processes that are as self-sustained as natural ecosystems and their application for environmentally sound biotechnology.
Internet Resources
ARSOlux: Development and implementation of whole-cell bioreporter-based sensor for arsenic in water resourceshttp://futurenow.dw-world.de/english/category/health/arsenic-in-the-water/
http://www.arsolux.ufz.de/
http://www.youtube.com/watch?v=NSm6C8mx6-4
http://www.ufz.de/index.php?en=19867
Long-term bioavailability of oil pollution
http://www.ufz.de/index.php?en=18580
Environmental biotechnology based on fungal physiology and ecology
http://www.nature.com/nrmicro/journal/v9/n3/full/nrmicro2519.html
Wikipedia
Publications (since 2001)
- Balciunas, E.M., Kappelmeyer, U., Harms, H., Heipieper, H.J., (2020):
Increasing ibuprofen degradation in constructed wetlands by bioaugmentation with gravel containing biofilms of an ibuprofen-degrading Sphingobium yanoikuyae
Eng. Life Sci. 20 (5-6), 160 - 167
full text (doi) - Becker, D., Popp, D., Harms, H., Centler, F., (2020):
A modular metagenomics pipeline allowing for the inclusion of prior knowledge using the example of anaerobic digestion
Microorganisms 8 (5), art. 669
full text (doi) - Bonk, F., Popp, D., Harms, H., Centler, F., (2018):
PCR-based quantification of taxa-specific abundances in microbial communities: Quantifying and avoiding common pitfalls
J. Microbiol. Methods 153 , 139 - 147
full text (doi) - Bonk, F., Popp, D., Weinrich, S., Sträuber, H., Becker, D., Kleinsteuber, S., Harms, H., Centler, F., (2019):
Determination of microbial maintenance in acetogenesis and methanogenesis by experimental and modeling techniques
Front. Microbiol. 10 , art. 166
full text (doi) - Bonk, F., Popp, D., Weinrich, S., Sträuber, H., Kleinsteuber, S., Harms, H., Centler, F., (2018):
Intermittent fasting for microbes: how discontinuous feeding increases functional stability in anaerobic digestion
Biotechnol. Biofuels 11 , art. 274
full text (doi) - Bonk, F., Popp, D., Weinrich, S., Sträuber, H., Kleinsteuber, S., Harms, H., Centler, F., (2018):
Ammonia inhibition of anaerobic volatile fatty acid degrading microbial communities
Front. Microbiol. 9 , art. 2921
full text (doi) - Duong, H.L., Paufler, S., Harms, H., Maskow, T., Schlosser, D., (2022):
Applicability and information value of biocalorimetry for the monitoring of fungal solid-state fermentation of lignocellulosic agricultural by-products
New Biotech. 66 , 97 - 106
full text (doi) - Fricke, C., Harms, H., Maskow, T., (2019):
Rapid calorimetric detection of bacterial contamination: Influence of the cultivation technique
Front. Microbiol. 10 , art. 2530
full text (doi) - Fricke, C., Harms, H., Maskow, T., (2020):
How to speed up the detection of aerobic microbial contaminations by using isothermal microcalorimetry
J. Therm. Anal. Calorim. 142 (5), 1933 - 1949
full text (doi) - Fricke, C., Klee, T., Richter, S., Paufler, S., Harms, H., Maskow, T., (2021):
Numerical heat flow and transport simulation as a development tool for the design of isothermal microcalorimeters
Thermochim. Acta 706 , art. 179070
full text (doi) - Fricke, C., Xu, J., Jiang, F.-L., Liu, Y., Harms, H., Maskow, T., (2020):
Rapid culture‐based detection of Legionella pneumophila using isothermal microcalorimetry with an improved evaluation method
Microb. Biotechnol. 13 (4), 1262 - 1272
full text (doi) - Ghanem, N., Stanley, C.E., Harms, H., Chatzinotas, A., Wick, L.Y., (2019):
Mycelial effects on phage retention during transport in a microfluidic platform
Environ. Sci. Technol. 53 (20), 11755 - 11763
full text (doi) - Ghanem, N., Trost, M., Sanchez Fontanet, L., Harms, H., Chatzinotas, A., Wick, L.Y., (2018):
Changes of the specific infectivity of tracer phages during transport in porous media
Environ. Sci. Technol. 52 (6), 3486 - 3492
full text (doi) - Grosch Schroeder, B., Logroño, W., Nunes da Rocha, U., Harms, H., Nikolausz, M., (2022):
Enrichment of anaerobic microbial communities from midgut and hindgut of sun beetle larvae (Pachnoda marginata) on wheat straw: effect of inoculum preparation
Microorganisms 10 (4), art. 761
full text (doi) - Guo, Y., Baumgart, S., Stärk, H.-J., Harms, H., Müller, S., (2017):
Mass cytometry for detection of silver at the bacterial single cell level
Front. Microbiol. 8 , art. 1326
full text (doi) - Guo, Y., Cichocki, N., Schattenberg, F., Geffers, R., Harms, H., Müller, S., (2019):
AgNPs change microbial community structures of wastewater
Front. Microbiol. 9 , art. 3211
full text (doi) - Guo, Y., Stärk, H.J., Hause, G., Schmidt, M., Harms, H., Wick, L.Y., Müller, S., (2017):
Heterogenic response of prokaryotes toward silver nanoparticles and ions is facilitated by phenotypes and attachment of silver aggregates to cell surfaces
Cytom. Part A 91 (8), 775 - 784
full text (doi) - Harms, H., Smith, K.E.C., Wick, L.Y., (2018):
Problems of hydrophobicity/bioavailability: an introduction
In: Krell, T., (ed.)
Cellular ecophysiology of microbe: Hydrocarbon and lipid interactions
Handbook of Hydrocarbon and Lipid Microbiology
Springer International Publishing, Cham, p. 3 - 15
full text (doi) - Harms, H., Wick, L.Y., (2017):
Determining the tendency of microorganisms to interact with hydrocarbon phases
In: McGenity, T.J., Timmis, K.N., Nogales, B., (eds.)
Hydrocarbon and lipid microbiology protocols. Activities and phenotypes
Springer Protocols Handbooks
Springer, Berlin, Heidelberg, p. 43 - 53
full text (doi) - Harms, H., Wick, L.Y., Schlosser, D., (2017):
The fungal community in organically polluted systems
In: Dighton, J., White, J.F., (eds.)
The fungal community: Its organization and role in the ecosystem
Mycology Series 32
CRC Press / Taylor & Francis, Boca Raton, FL, p. 459 - 469 - Harms, H., Wick, L.Y., Smith, K.E.C., (2018):
Matrix - hydrophobic compound interactions
In: Krell, T., (ed.)
Cellular ecophysiology of microbe: Hydrocarbon and lipid interactions
Handbook of Hydrocarbon and Lipid Microbiology
Springer International Publishing, Cham, p. 33 - 45
full text (doi) - Johnke, J., Baron, M., Leeuw, M., Kushmaro, A., Jurkevitch, E., Harms, H., Chatzinotas, A., (2017):
A generalist protist predator enables coexistence in multitrophic predator-prey systems containing a phage and the bacterial predator Bdellovibrio
Front. Ecol. Evol. 5 , art. 124
full text (doi) - Johnke, J., Boenigk, J., Harms, H., Chatzinotas, A., (2017):
Killing the killer: predation between protists and predatory bacteria
FEMS Microbiol. Lett. 364 (9), fnx089
full text (doi) - Kallies, R., Kiesel, B., Schmidt, M., Ghanem, N., Zopfi, J., Hackermüller, J., Harms, H., Wick, L.Y., Chatzinotas, A., (2019):
Complete genome sequence of Pseudoalteromonas virus vB_PspP-H6/1 that infects Pseudoalteromonas sp. strain H6
Mar. Genom. 47 , art. 100667
full text (doi) - Kallies, R., Kiesel, B., Schmidt, M., Kacza, J., Ghanem, N., Narr, A., Zopfi, J., Wick, L.Y., Hackermüller, J., Harms, H., Chatzinotas, A., (2017):
Complete genome sequence of Pseudoalteromonas phage vB_PspS-H40/1 (formerly H40/1) that infects Pseudoalteromonas sp. strain H40 and is used as biological tracer in hydrological transport studies
Stand. Genomic Sci. 12 , art. 20
full text (doi) - Karakoç, C., Radchuk, V., Harms, H., Chatzinotas, A., (2018):
Interactions between predation and disturbances shape prey communities
Sci. Rep. 8 , art. 2968
full text (doi) - Karakoç, C., Singer, A., Johst, K., Harms, H., Chatzinotas, A., (2017):
Transient recovery dynamics of a predator–prey system under press and pulse disturbances
BMC Ecology 17 , art. 13
full text (doi) - Khan, N., Brizola Toscan, R., Lunayo, A., Wamalwa, B., Muge, E., Mulaa, F.J., Kallies, R., Harms, H., Wick, L.Y., Nunes da Rocha, U., (2022):
Draft genome sequences of two Sphingobium species associated with hexachlorocyclohexane (HCH) degradation isolated from an HCH-contaminated soil
Microbiol. Resour. Announc. 11 (3), e00886-21
full text (doi) - Khan, N., Brizola Toscan, R., Lunayo, A., Wamalwa, B., Muge, E., Mulaa, F.J., Kallies, R., Harms, H., Wick, L.Y., Nunes da Rocha, U., (2021):
Draft genome sequence of Fusarium equiseti K3, a fungal species isolated from hexachlorocyclohexane-contaminated soil
Microbiol. Resour. Announc. 10 (47), e00885-21
full text (doi) - König, S., Vogel, H.-J., Harms, H., Worrich, A., (2020):
Physical, chemical and biological effects on soil bacterial dynamics in microscale models
Front. Ecol. Evol. 8 , art. 53
full text (doi) - König, S., Worrich, A., Banitz, T., Centler, F., Harms, H., Kästner, M., Miltner, A., Wick, L.Y., Thullner, M., Frank, K., (2018):
Spatiotemporal disturbance characteristics determine functional stability and collapse risk of simulated microbial ecosystems
Sci. Rep. 8 , art. 9488
full text (doi) - König, S., Worrich, A., Banitz, T., Harms, H., Kästner, M., Miltner, A., Wick, L.Y., Frank, K., Thullner, M., Centler, F., (2018):
Functional resistance to recurrent spatially heterogeneous disturbances is facilitated by increased activity of surviving bacteria in a virtual ecosystem
Front. Microbiol. 9 , art. 734
full text (doi) - Kopinke, F.-D., Harms, H., (2020):
Letter: What are the active species in the photocatalytic disinfection of water?
Chem 6 (4), 806 - 807
full text (doi) - Krohn, S., Zeller, K., Böhm, S., Chatzinotas, A., Harms, H., Hartmann, I., Heidtmann, A., Herber, A., Kaiser, T., Treuheit, M., Hoffmeister, A., Berg, T., Engelmann, C., (2018):
Molecular quantification and differentiation of Candida species in biological specimens of patients with liver cirrhosis
PLOS One 13 (6), e0197319
full text (doi) - Krueger, M.C., Seiwert, B., Prager, A., Zhang, S., Abel, B., Harms, H., Schlosser, D., (2017):
Degradation of polystyrene and selected analogues by biological Fenton chemistry approaches: opportunities and limitations
Chemosphere 173 , 520 - 528
full text (doi) - Lambrecht, J., Cichocki, N., Hübschmann, T., Koch, C., Harms, H., Müller, S., (2017):
Flow cytometric quantification, sorting and sequencing of methanogenic archaea based on F420 autofluorescence
Microb. Cell. Fact. 16 , art. 180
full text (doi) - Lambrecht, J., Cichocki, N., Schattenberg, F., Kleinsteuber, S., Harms, H., Müller, S., Sträuber, H., (2019):
Key sub‑community dynamics of medium‑chain carboxylate production
Microb. Cell. Fact. 18 , art. 92
full text (doi) - Lambrecht, J., Schattenberg, F., Harms, H., Müller, S., (2018):
Characterizing microbiome dynamics – flow cytometry based workflows from pure cultures to natural communities
J. Vis. Exp. (137), e58033
full text (doi) - Liu, B., Kleinsteuber, S., Centler, F., Harms, H., Sträuber, H., (2020):
Competition between butyrate fermenters and chain-elongating bacteria limits the efficiency of medium-chain carboxylate production
Front. Microbiol. 11 , art. 336
full text (doi) - Liu, B., Popp, D., Müller, N., Sträuber, H., Harms, H., Kleinsteuber, S., (2020):
Three novel Clostridia isolates produce n-caproate and iso-butyrate from lactate: comparative genomics of chain-elongating bacteria
Microorganisms 8 (12), art. 1970
full text (doi) - Liu, B., Popp, D., Sträuber, H., Harms, H., Kleinsteuber, S., (2020):
Draft genome sequences of three Clostridia isolates involved in lactate-based chain elongation
Microbiol. Resour. Announc. 9 (32), e00679-20
full text (doi) - Liu, B., Sträuber, H., Saraiva, J., Harms, H., Silva, S.G., Kasmanas, J.C., Kleinsteuber, S., Nunes da Rocha, U., (2022):
Machine learning-assisted identification of bioindicators predicts medium-chain carboxylate production performance of an anaerobic mixed culture
Microbiome 10 , art. 48
full text (doi) - Liu, Z., Cichocki, N., Bonk, F., Günther, S., Schattenberg, F., Harms, H., Centler, F., Müller, S., (2018):
Ecological stability properties of microbial communities assessed by flow cytometry
mSphere 3 (1), e00564-17
full text (doi) - Logroño, W., Nikolausz, M., Harms, H., Kleinsteuber, S., (2022):
Physiological effects of 2-bromoethanesulfonate on hydrogenotrophic pure and mixed cultures
Microorganisms 10 (2), art. 355
full text (doi) - Logroño, W., Popp, D., Kleinsteuber, S., Sträuber, H., Harms, H., Nikolausz, M., (2020):
Microbial resource management for ex situ biomethanation of hydrogen at alkaline pH
Microorganisms 8 , art. 614
full text (doi) - Logroño, W., Popp, D., Nikolausz, M., Kluge, P., Harms, H., Kleinsteuber, S., (2021):
Microbial communities in flexible biomethanation of hydrogen are functionally resilient upon starvation
Front. Microbiol. 12 , art. 619632
full text (doi) - Lucas, R., Groeneveld, J., Harms, H., Johst, K., Frank, K., Kleinsteuber, S., (2017):
A critical evaluation of ecological indices for the comparative analysis of microbial communities based on molecular datasets
FEMS Microbiol. Ecol. 93 (1), fiw209
full text (doi) - Lv, Z., Leite, A.F., Harms, H., Glaser, K., Liebetrau, J., Kleinsteuber, S., Nikolausz, M., (2019):
Microbial community shifts in biogas reactors upon complete or partial ammonia inhibition
Appl. Microbiol. Biotechnol. 103 (1), 519 - 533
full text (doi) - Meyer-Cifuentes, I., Martinez-Lavanchy, P.M., Marin-Cevada, V., Böhnke, S., Harms, H., Müller, J.A., Heipieper, H.J., (2017):
Isolation and characterization of Magnetospirillum sp. strain 15-1 as a representative anaerobic toluene-degrader from a constructed wetland model
PLOS One 12 (4), e0174750
full text (doi) - Narr, A., Nawaz, A., Wick, L.Y., Harms, H., Chatzinotas, A., (2017):
Soil viral communities vary temporally and along a land use transect as revealed by virus-like particle counting and a modified community fingerprinting approach (fRAPD)
Front. Microbiol. 8 , art. 1975
full text (doi) - Otto, S., Bruni, E.P., Harms, H., Wick, L.Y., (2017):
Catch me if you can: dispersal and foraging of Bdellovibrio bacteriovorus 109J along mycelia
ISME J. 11 (2), 386 - 393
full text (doi) - Otto, S., Harms, H., Wick, L.Y., (2017):
Effects of predation and dispersal on bacterial abundance and contaminant biodegradation
FEMS Microbiol. Ecol. 93 (2), fiw241
full text (doi) - Ozbayram, E.G., Ince, O., Ince, B., Harms, H., Kleinsteuber, S., (2018):
Comparison of rumen and manure microbiomes and implications for the inoculation of anaerobic digesters
Microorganisms 6 (1), art. 15
full text (doi) - Popp, D., Plugge, C.M., Kleinsteuber, S., Harms, H., Sträuber, H., (2017):
Inhibitory effect of coumarin on syntrophic fatty acid-oxidizing and methanogenic cultures and biogas reactor microbiomes
Appl. Environ. Microb. 83 (13), e00438-17
full text (doi) - Popp, D., von Gillhaussen, P., Weidlich, E.W.A., Sträuber, H., Harms, H., Temperton, V.M., (2017):
Methane yield of biomass from extensive grassland is affected by compositional changes induced by order of arrival
GCB Bioenergy 9 (10), 1555 - 1562
full text (doi) - Puiggené, Ò., Cárdenas Espinosa, M.J., Schlosser, D., Thies, S., Jehmlich, N., Kappelmeyer, U., Schreiber, S., Wibberg, D., Kalinowski, J., Harms, H., Heipieper, H.J., Eberlein, C., (2022):
Extracellular degradation of a polyurethane oligomer involving outer membrane vesicles and further insights on the degradation of 2,4-diaminotoluene in Pseudomonas capeferrum TDA1
Sci. Rep. 12 , art. 2666
full text (doi) - Rohde, M.-T., Tischer, S., Harms, H., Rohwerder, T., (2017):
Production of 2-hydroxyisobutyric acid from methanol by Methylobacterium extorquens AM1 expressing (R)-3-hydroxybutyryl coenzyme A-isomerizing enzymes
Appl. Environ. Microb. 83 (3), e02622-16
full text (doi) - Shan, Y., Harms, H., Wick, L.Y., (2018):
Electric field effects on bacterial deposition and transport in porous media
Environ. Sci. Technol. 52 (24), 14294 - 14301
full text (doi) - Shan, Y., Liu, L., Liu, Y., Harms, H., Wick, L.Y., (2020):
Effects of electrokinetic phenomena on bacterial deposition monitored by quartz crystal microbalance with dissipation monitoring
Environ. Sci. Technol. 54 (21), 14036 - 14045
full text (doi) - Shan, Y., Qin, J., Harms, H., Wick, L.Y., (2020):
Electrokinetic effects on the interaction of phenanthrene with geo-sorbents
Chemosphere 242 , art. 125161
full text (doi) - Vásquez-Piñeros, M.A., Martínez-Lavanchy, P.M., Jehmlich, N., Pieper, D.H., Rincón, C.A., Harms, H., Junca, H., Heipieper, H.J., (2018):
Delftia sp. LCW, a strain isolated from a constructed wetland shows novel properties for dimethylphenol isomers degradation
BMC Microbiol. 18 , art. 108
full text (doi) - Vogel, K., Greinert, T., Harms, H., Sadowski, G., Held, C., Maskow, T., (2020):
Influence of cytosolic conditions on the reaction equilibrium and the reaction enthalpy of the enolase reaction accessed by calorimetry and van ‘t HOFF
Biochim. Biophys. Acta-Gen. Subj. 1864 (10), art. 129675
full text (doi) - Vogel, K., Greinert, T., Held, C., Harms, H., Maskow, T., (2020):
Application of irreversible thermodynamics to determine the influence of cell mimicking conditions on the kinetics of equilibrium reactions of the glycolysis
Biophys. J. 118 (3, Suppl. 1), 346a - 347a
full text (doi) - Vogel, K., Greinert, T., Reichard, M., Held, C., Harms, H., Maskow, T., (2020):
Thermodynamics and kinetics of glycolytic reactions. Part I: Kinetic modeling based on irreversible thermodynamics and validation by calorimetry
Int. J. Mol. Sci. 21 (21), art. 8341
full text (doi) - Vogel, K., Greinert, T., Reichard, M., Held, C., Harms, H., Maskow, T., (2020):
Thermodynamics and kinetics of glycolytic reactions. Part II: Influence of cytosolic conditions on thermodynamic state variables and kinetic parameters
Int. J. Mol. Sci. 21 (21), art. 7921
full text (doi) - Vogel, K., Wei, R., Pfaff, L., Breite, D., Al-Fathi, H., Ortmann, C., Estrela-Lopis, I., Venus, T., Schulze, A., Harms, H., Bornscheuer, U.T., Maskow, T., (2021):
Enzymatic degradation of polyethylene terephthalate nanoplastics analyzed in real time by isothermal titration calorimetry
Sci. Total Environ. 773 , art. 145111
full text (doi) - Vučić, V., Süring, C., Harms, H., Müller, S., Günther, S., (2021):
A framework for P-cycle assessment in wastewater treatment plants
Sci. Total Environ. 760 , art. 143392
full text (doi) - Weise, H., Auge, H., Baessler, C., Bärlund, I., Bennett, E.M., Berger, U., Bohn, F., Bonn, A., Borchardt, D., Brand, F., Chatzinotas, A., Corstanje, R., De Laender, F., Dietrich, P., Dunker, S., Durka, W., Fazey, I., Groeneveld, J., Guilbaud, C.S.E., Harms, H., Harpole, S., Harris, J., Jax, K., Jeltsch, F., Johst, K., Joshi, J., Klotz, S., Kühn, I., Kuhlicke, C., Müller, B., Radchuk, V., Reuter, H., Rinke, K., Schmitt-Jansen, M., Seppelt, R., Singer, A., Standish, R.J., Thulke, H.-H., Tietjen, B., Weitere, M., Wirth, C., Wolf, C., Grimm, V., (2020):
Resilience trinity: safeguarding ecosystem functioning and services across three different time horizons and decision contexts
Oikos 129 (4), 445 - 456
full text (doi) - Wick, L.Y., Harms, H., (2018):
The mycosphere as a hotspot for the biotransformation of contaminants in soil
In: Krell, T., (ed.)
Cellular ecophysiology of microbe: Hydrocarbon and lipid interactions
Handbook of Hydrocarbon and Lipid Microbiology
Springer International Publishing, Cham, p. 315 - 324
full text (doi) - Wick, L.Y., Harms, H., Smith, K.E.C., (2018):
Microorganism-hydrophobic compound interactions
In: Krell, T., (ed.)
Cellular ecophysiology of microbe: Hydrocarbon and lipid interactions
Handbook of Hydrocarbon and Lipid Microbiology
Springer International Publishing, Cham, p. 17 - 31
full text (doi) - Winter, M., Thürmann, L., Gu, Z., Schüürmann, G., Herberth, G., Hinz, D., von Bergen, M., Harms, H., Olek, S., Röder, S., Borte, M., Eils, R., Lehmann, I., Trump, S., (2017):
The benzene metabolite 1,4-benzoquinone reduces regulatory T-cell function: A potential mechanism for tobacco smoke–associated atopic dermatitis
J. Allergy Clin. Immunol. 140 (2), 603 - 605
full text (doi) - Wintsche, B., Jehmlich, N., Popp, D., Harms, H., Kleinsteuber, S., (2018):
Metabolic adaptation of methanogens in anaerobic digesters upon trace element limitation
Front. Microbiol. 9 , art. 405
full text (doi) - Worrich, A., Musat, N., Harms, H., (2019):
Associational effects in the microbial neighborhood
ISME J. 13 , 2143 - 2149
full text (doi) - Worrich, A., Stryhanyuk, H., Musat, N., König, S., Banitz, T., Centler, F., Frank, K., Thullner, M., Harms, H., Richnow, H.-H., Miltner, A., Kästner, M., Wick, L.Y., (2017):
Mycelium-mediated transfer of water and nutrients stimulates bacterial activity in dry and oligotrophic environments
Nat. Commun. 8 , art. 15472
full text (doi) - Xiong, B.-J., Dusny, C., Wang, L., Appel, J., Lindstaedt, K., Schlosser, D., Harms, H., Wick, L., (2021):
Illuminate the hidden: in vivo mapping of microscale pH in the mycosphere using a novel whole-cell biosensor
ISME Commun. 1 , art. 75
full text (doi) - Xiong, B.-J., Kleinsteuber, S., Sträuber, H., Dusny, C., Harms, H., Wick, L.Y., (2022):
Impact of fungal hyphae on growth and dispersal of obligate anaerobic bacteria in aerated habitats
mBio 13 (3), e00769-22
full text (doi) - Xiong, B.-J., Stanley, C.E., Dusny, C., Schlosser, D., Harms, H., Wick, L.Y., (2022):
pH distribution along growing fungal hyphae at microscale
J. Fungi 8 (6), art. 599
full text (doi) - You, X., Kallies, R., Hild, K., Hildebrandt, A., Harms, H., Chatzinotas, A., Wick, L.Y., (2022):
Transport of marine tracer phage particles in soil
Sci. Total Environ. 814 , art. 152704
full text (doi) - You, X., Kallies, R., Kühn, I., Schmidt, M., Harms, H., Chatzinotas, A., Wick, L.Y., (2022):
Phage co-transport with hyphal-riding bacteria fuels bacterial invasion in a water-unsaturated microbial model system
ISME J. 16 (5), 1275 - 1283
full text (doi) - You, X., Klose, N., Kallies, R., Harms, H., Chatzinotas, A., Wick, L.Y., (2022):
Mycelia-assisted isolation of non-host bacteria able to co-transport phages
Viruses 14 (2), art. 195
full text (doi)
- Banitz, T., Frank, K., Wick, L.Y., Harms, H., Johst, K., (2016):
Spatial metrics as indicators of biodegradation benefits from bacterial dispersal networks
Ecol. Indic. 60 , 54 - 63
full text (doi) - Berthold, T., Centler, F., Hübschmann, T., Remer, R., Thullner, M., Harms, H., Wick, L.Y., (2016):
Mycelia as a focal point for horizontal gene transfer among soil bacteria
Sci. Rep. 6 , art. 36390
full text (doi) - Ghanem, N., Kiesel, B., Kallies, R., Harms, H., Chatzinotas, A., Wick, L.Y., (2016):
Marine phages as tracers: effects of size, morphology, and physico–chemical surface properties on transport in a porous medium
Environ. Sci. Technol. 50 (23), 12816 - 12824
full text (doi) - Günther, S., Faust, K., Schumann, J., Harms, H., Raes, J., Müller, S., (2016):
Species-sorting and mass-transfer paradigms control managed natural metacommunities
Environ. Microbiol. 18 (12), 4862 - 4877
full text (doi) - Jahn, M., Vorpahl, C., Hübschmann, T., Harms, H., Müller, S., (2016):
Copy number variability of expression plasmids determined by cell sorting and Droplet Digital PCR
Microb. Cell. Fact. 15 , art. 211
full text (doi) - Khan, A.M., Wick, L.Y., Harms, H., Thullner, M., (2016):
Biodegradation of vapor-phase toluene in unsaturated porous media: Column experiments
Environ. Pollut. 211 , 325 - 331
full text (doi) - Leite, A.F., Janke, L., Harms, H., Richnow, H.-H., Nikolausz, M., (2016):
Lessons learned from the microbial ecology resulting from different inoculation strategies for biogas production from waste products of the bioethanol/sugar industry
Biotechnol. Biofuels 9 , art. 144
full text (doi) - Otto, S., Banitz, T., Thullner, M., Harms, H., Wick, L.Y., (2016):
Effects of facilitated bacterial dispersal on the degradation and emission of a desorbing contaminant
Environ. Sci. Technol. 50 (12), 6320 - 6326
full text (doi) - Popp, D., Harms, H., Sträuber, H., (2016):
The alkaloid gramine in the anaerobic digestion process—inhibition and adaptation of the methanogenic community
Appl. Microbiol. Biotechnol. 100 (16), 7311 - 7322
full text (doi) - Rohde, M.-T., Paufler, S., Harms, H., Maskow, T., (2016):
Calorespirometric feeding control enhances bioproduction from toxic feedstocks—Demonstration for biopolymer production out of methanol
Biotechnol. Bioeng. 113 (10), 2113 - 2121
full text (doi) - Saleem, M., Fetzer, I., Harms, H., Chatzinotas, A., (2016):
Trophic complexity in aqueous systems: bacterial species richness and protistan predation regulate dissolved organic carbon and dissolved total nitrogen removal
Proc. R. Soc. B-Biol. Sci. 283 (1825), art. 20152724
full text (doi) - Wintsche, B., Glaser, K., Sträuber, H., Centler, F., Liebetrau, J., Harms, H., Kleinsteuber, S., (2016):
Trace elements induce predominance among methanogenic activity in anaerobic digestion
Front. Microbiol. 7 , art. 2034
full text (doi) - Worrich, A., König, S., Banitz, T., Centler, F., Frank, K., Thullner, M., Harms, H., Miltner, A., Wick, L.Y., Kaestner, M., (2016):
Bacterial dispersal promotes biodegradation in heterogeneous systems exposed to osmotic stress
Front. Microbiol. 7 , art. 1214
full text (doi) - Worrich, A., König, S., Miltner, A., Banitz, T., Centler, F., Frank, K., Thullner, M., Harms, H., Kästner, M., Wick, L.Y., (2016):
Mycelium-like networks increase bacterial dispersal, growth, and biodegradation in a model ecosystem at various water potentials
Appl. Environ. Microb. 82 (10), 2902 - 2908
full text (doi)
- Fetzer, I., Johst, K., Schäwe, R., Banitz, T., Harms, H., Chatzinotas, A., (2015):
The extent of functional redundancy changes as species’ roles shift in different environments
Proc. Natl. Acad. Sci. U.S.A. 112 (48), 14888 - 14893
full text (doi) - Glaser, K., Kuppardt, A., Boenigk, J., Harms, H., Fetzer, I., Chatzinotas, A., (2015):
The influence of environmental factors on protistan microorganisms in grassland soils along a land-use gradient
Sci. Total Environ. 537 , 33 - 42
full text (doi) - Krueger, M.C., Harms, H., Schlosser, D., (2015):
Prospects for microbiological solutions to environmental pollution with plastics
Appl. Microbiol. Biotechnol. 99 (1), 8857 - 8874
full text (doi) - Kurteva-Yaneva, N., Zahn, M., Weichler, M.-T., Starke, R., Harms, H., Müller, R.H., Sträter, N., Rohwerder, T., (2015):
Structural basis of the stereospecificity of bacterial B12-dependent 2-hydroxyisobutyryl-CoA mutase
J. Biol. Chem. 290 , 9727 - 9737
full text (doi) - Leite, A.F., Janke, L., Harms, H., Zang, J.W., Fonseca-Zang, W.A., Stinner, W., Nikolausz, M., (2015):
Assessment of the variations in characteristics and methane potential of major waste products from the Brazilian bioethanol industry along an operating season
Energy Fuels 29 (7), 4022 - 4029
full text (doi) - Leite, A.F., Janke, L., Lv, Z., Harms, H., Richnow, H.-H., Nikolausz, M., (2015):
Improved monitoring of semi-continuous anaerobic digestion of sugarcane waste: effects of increasing organic loading rate on methanogenic community dynamics
Int. J. Mol. Sci. 16 (10), 23210 - 23226
full text (doi) - Lucas, R., Kuchenbuch, A., Fetzer, I., Harms, H., Kleinsteuber, S., (2015):
Long-term monitoring reveals stable and remarkably similar microbial communities in parallel full-scale biogas reactors digesting energy crops
FEMS Microbiol. Ecol. 91 (3), fiv004
full text (doi) - Melzer, S., Winter, G., Jäger, K., Hübschmann, T., Hause, G., Syrowatka, F., Harms, H., Tárnok, A., Müller, S., (2015):
Cytometric patterns reveal growth states of Shewanella putrefaciens
Microb. Biotechnol. 8 (3), 379 - 391
full text (doi) - Otto, B., Beuchel, C., Liers, C., Reisser, W., Harms, H., Schlosser, D., (2015):
Laccase-like enzyme activities from chlorophycean green algae with potential for bioconversion of phenolic pollutants
FEMS Microbiol. Lett. 362 (11), fnv072
full text (doi) - Popp, D., Schrader, S., Kleinsteuber, S., Harms, H., Sträuber, H., (2015):
Biogas production from coumarin-rich plants—inhibition by coumarin and recovery by adaptation of the bacterial community
FEMS Microbiol. Ecol. 91 (9), fiv103
full text (doi) - Przybylski, D., Rohwerder, T., Dilßner, C., Maskow, T., Harms, H., Müller, R.H., (2015):
Exploiting mixtures of H2, CO2, and O2 for improved production of methacrylate precursor 2-hydroxyisobutyric acid by engineered Cupriavidus necator strains
Appl. Microbiol. Biotechnol. 99 (5), 2131 - 2145
full text (doi) - Qin, J., Moustafa, A., Harms, H., El-Din, M.G., Wick, L.Y., (2015):
The power of power: electrokinetic control of PAH interactions with exfoliated graphite
J. Hazard. Mater. 288 , 25 - 33
full text (doi) - Qin, J., Sun, X., Liu, Y., Berthold, T., Harms, H., Wick, L.Y., (2015):
Electrokinetic control of bacterial deposition and transport
Environ. Sci. Technol. 49 (9), 5663 - 5671
full text (doi) - Siegfried, K., Hahn-Tomer, S., Koelsch, A., Osterwalder, E., Mattusch, J., Stärk, H.-J., Meichtry, M., De Seta, E.G., Reina, F.D., Panigatti, C., Litter, M.I., Harms, H., (2015):
Introducing simple detection of bioavailable arsenic at Rafaela (Santa Fe Province, Argentina) using the ARSOlux biosensor
Int. J. Environ. Res. Public Health 12 (5), 5465 - 5482
full text (doi) - Steinbach, A., Schulz, S., Giebler, J., Schulz, S., Pronk, G.J., Kögel-Knabner, I., Harms, H., Wick, L.Y., Schloter, M., (2015):
Clay minerals and metal oxides strongly influence the structure of alkane-degrading microbial communities during soil maturation
ISME J. 9 (7), 1687 - 1691
full text (doi) - Weichler, M.-T., Kurteva-Yaneva, N., Przybylski, D., Schuster, J., Müller, R.H., Harms, H., Rohwerder, T., (2015):
Thermophilic coenzyme B12-dependent acyl-coenzyme A (CoA) mutase from Kyrpidia tusciae DSM 2912 preferentially catalyzes isomerization of (R)-3-hydroxybutyryl- and 2-hydroxyisobutyryl-CoA
Appl. Environ. Microb. 81 (14), 4564 - 4572
full text (doi)
- Banitz, T., Johst, K., Wick, L.Y., Schamfuß, S., Harms, H., Frank, K., (2014):
Corrigendum: Highways versus pipelines: contributions of two fungal transport mechanisms to efficient bioremediation (vol 5, pg 211, 2013)
Environ. Microbiol. Rep. 6 (4), 414 - 414
full text (doi) - Bühligen, F., Lindner, P., Fetzer, I., Stahl, F., Scheper, T., Harms, H., Müller, S., (2014):
Analysis of aging in lager brewing yeast during serial repitching
J. Biotechnol. 187 , 60 - 70
full text (doi) - Giebler, J., Wick, L.Y., Harms, H., Chatzinotas, A., (2014):
Evaluating T-RFLP protocols to sensitively analyze the genetic diversity and community changes of soil alkane degrading bacteria
Eur. J. Soil Biol. 65 , 107 - 113
full text (doi) - Glaser, K., Kuppardt, A., Krohn, S., Heidtmann, A., Harms, H., Chatzinotas, A., (2014):
Primer pairs for the specific environmental detection and T-RFLP analysis of the ubiquitous flagellate taxa Chrysophyceae and Kinetoplastea
J. Microbiol. Methods 100 , 8 - 16
full text (doi) - Hahn-Tomer, S., Siegfried, K., Chatzinotas, A., Kuppardt, A., Harms, H., (2014):
ARSOlux—arsenic biosensor based on bioreporter bacteria
In: Litter, M.I., Nicolli, H.B., Meichtry, M., Quici, N., Bundschuh, J., Bhattacharya, P., Naidu, R., (eds.)
One Century of the Discovery of Arsenicosis in Latin America (1914-2014) As2014. Proceedings of the 5th International Congress on Arsenic in the Environment, May 11-16, 2014, Buenos Aires, Argentina
CRC Press, Boca Raton, FL, p. 207 - 208
full text (doi) - Harms, H., Junca, H., (2014):
Editorial overview: Environmental Biotechnology
Curr. Opin. Biotechnol. 27 , vii - ix
full text (doi) - Jahn, M., Vorpahl, C., Türkowsky, D., Lindmeyer, M., Bühler, B., Harms, H., Müller, S., (2014):
Population heterogeneity in Pseudomonas putida analyzed on the single cell level using proteomics and digital PCR
New Biotech. 31 (Suppl.), S58 - S59
full text (doi) - Jahn, M., Vorpahl, C., Türkowsky, D., Lindmeyer, M., Bühler, B., Harms, H., Müller, S., (2014):
Accurate determination of plasmid copy number of flow-sorted cells using droplet digital PCR
Anal. Chem. 86 (12), 5969 - 5976
full text (doi) - Koch, C., Harms, H., Müller, S., (2014):
Dynamics in the microbial cytome — single cell analytics in natural systems
Curr. Opin. Biotechnol. 27 , 134 - 141
full text (doi) - Koch, C., Müller, S., Harms, H., Harnisch, F., (2014):
Microbiomes in bioenergy production: From analysis to management
Curr. Opin. Biotechnol. 27 , 65 - 72
full text (doi) - Kuppardt, A., Kleinsteuber, S., Vogt, C., Lüders, T., Harms, H., Chatzinotas, A., (2014):
Phylogenetic and functional diversity within toluene-degrading, sulphate-reducing consortia enriched from a contaminated aquifer
Microb. Ecol. 68 (2), 222 - 234
full text (doi) - Lv, Z., Hu, M., Harms, H., Richnow, H.H., Liebetrau, J., Nikolausz, M., (2014):
Stable isotope composition of biogas allows early warning of complete process failure as a result of ammonia inhibition in anaerobic digesters
Bioresour. Technol. 167 , 251 - 259
full text (doi) - Lv, Z., Leite, A.F., Harms, H., Richnow, H.H., Liebetrau, J., Nikolausz, M., (2014):
Influences of the substrate feeding regime on methanogenic activity in biogas reactors approached by molecular and stable isotope methods
Anaerobe 29 , 91 - 99
full text (doi) - Morais, F.M., Buchholz, F., Hartmann, T., Lerchner, J., Neu, T.R., Kiesel, B., Harms, H., Maskow, T., (2014):
Chip-calorimetric monitoring of biofilm eradication with bacteriophages reveals an unexpected infection-related heat profile
J. Therm. Anal. Calorim. 115 (3), 2203 - 2210
full text (doi) - Schamfuß, S., Neu, T.R., Harms, H., Wick, L.Y., (2014):
A whole cell bioreporter approach to assess transport and bioavailability of organic contaminants in water unsaturated systems
J. Vis. Exp. 94 , e52334
full text (doi) - Singh, S., Harms, H., Schlosser, D., (2014):
Screening of ecologically diverse fungi for their potential to pretreat lignocellulosic bioenergy feedstock
Appl. Microbiol. Biotechnol. 98 (7), 3355 - 3370
full text (doi)
- Banitz, T., Johst, K., Wick, L.Y., Schamfuß, S., Harms, H., Frank, K., (2013):
Highways versus pipelines: contributions of two fungal transport mechanisms to efficient bioremediation
Environ. Microbiol. Rep. 5 (2), 211 - 218
full text (doi) - Bühligen, F., Rüdinger, P., Fetzer, I., Stahl, F., Scheper, T., Harms, H., Müller, S., (2013):
Sustainability of industrial yeast serial repitching practice studied by gene expression and correlation analysis
J. Biotechnol. 168 (4), 718 - 728
full text (doi) - Giebler, J., Wick, L.Y., Chatzinotas, A., Harms, H., (2013):
Alkane-degrading bacteria at the soil–litter interface: comparing isolates with T-RFLP-based community profiles
FEMS Microbiol. Ecol. 86 (1), 45 - 58
full text (doi) - Giebler, J., Wick, L.Y., Schloter, M., Harms, H., Chatzinotas, A., (2013):
Evaluating the assignment of alkB terminal restriction fragments and sequence types to distinct bacterial taxa
Appl. Environ. Microb. 79 (9), 3129 - 3132
full text (doi) - Jahn, M., Seifert, J., Hübschmann, T., von Bergen, M., Harms, H., Müller, S., (2013):
Comparison of preservation methods for bacterial cells in cytomics and proteomics
Journal of Integrated OMICS 3 (1), 25 - 33
full text (doi) - Koch, C., Fetzer, I., Harms, H., Müller, S., (2013):
CHIC—an automated approach for the detection of dynamic variations in complex microbial communities
Cytom. Part A 83 (6), 561 - 567
full text (doi) - Koch, C., Fetzer, I., Schmidt, T., Harms, H., Müller, S., (2013):
Monitoring functions in managed microbial systems by cytometric bar coding
Environ. Sci. Technol. 47 (3), 1753 - 1760
full text (doi) - Leibeling, S., Maeß, M.B., Centler, F., Kleinsteuber, S., von Bergen, M., Thullner, M., Harms, H., Müller, R.H., (2013):
Posttranslational oxidative modification of (R)-2-(2,4-dichlorophenoxy)propionate/α-ketoglutarate-dependent dioxygenases (RdpA) leads to improved degradation of 2,4-dichlorophenoxyacetate (2,4-D)
Eng. Life Sci. 13 (3), 278 - 291
full text (doi) - Mariana, F., Buchholz, F., Lerchner, J., Neu, T.R., Harms, H., Maskow, T., (2013):
Chip-calorimetric monitoring of biofilm eradication with antibiotics provides mechanistic information
Int. J. Med. Microbiol. 303 (3), 158 - 165
full text (doi) - Paufler, S., Weichler, M.-T., Harms, H., Maskow, T., (2013):
Simple improvement of the sensitivity of a heat flux reaction calorimeter to monitor bioprocesses with weak heat production
Thermochim. Acta 569 , 71 - 77
full text (doi) - Przybylski, D., Rohwerder, T., Harms, H., Yaneva, N., Müller, R.H., (2013):
Synthesis of the building block 2-hydroxyisobutyrate from fructose and butyrate by Cupriavidus necator H16
Appl. Microbiol. Biotechnol. 97 (20), 8875 - 8885
full text (doi) - Rohwerder, T., Müller, R.H., Weichler, M.T., Schuster, J., Hübschmann, T., Müller, S., Harms, H., (2013):
Cultivation of Aquincola tertiaricarbonis L108 on the fuel oxygenate intermediate tert-butyl alcohol induces aerobic anoxygenic photosynthesis at extremely low feeding rates
Microbiology-(UK) 159 (10), 2180 - 2190
full text (doi) - Saleem, M., Fetzer, I., Harms, H., Chatzinotas, A., (2013):
Diversity of protists and bacteria determines predation performance and stability
ISME J. 7 (10), 1912 - 1921
full text (doi) - Schamfuß, S., Neu, T.R., van der Meer, J.R., Tecon, R., Harms, H., Wick, L.Y., (2013):
Impact of mycelia on the accessibility of fluorene to PAH-degrading bacteria
Environ. Sci. Technol. 47 (13), 6908 - 6915
full text (doi) - Schuster, J., Purswani, J., Breuer, U., Pozo, C., Harms, H., Müller, R.H., Rohwerder, T., (2013):
Constitutive expression of the cytochrome P450 EthABCD monooxygenase system enables degradation of synthetic dialkyl ethers in aquincola tertiaricarbonis L108
Appl. Environ. Microb. 79 (7), 2321 - 2327
full text (doi) - Tischer, K., Kleinsteuber, S., Schleinitz, K.M., Fetzer, I., Spott, O., Stange, F., Lohse, U., Franz, J., Neumann, F., Gerling, S., Schmidt, C., Hasselwander, E., Harms, H., Wendeberg, A., (2013):
Microbial communities along biogeochemical gradients in a hydrocarbon-contaminated aquifer
Environ. Microbiol. 15 (9), 2603 - 2615
full text (doi) - Wick, L.Y., Harms, H., (2013):
Unterirdische Autobahnen: Pilze beim Schadstoffabbau
Biospektrum 19 (7), 720 - 722
full text (doi)
- Banitz, T., Johst, K., Wick, L.Y., Fetzer, I., Harms, H., Frank, K., (2012):
The relevance of conditional dispersal for bacterial colony growth and biodegradation
Microb. Ecol. 63 (2), 339 - 347
full text (doi) - Buchholz, F., Lerchner, J., Mariana, F., Kuhlicke, U., Neu, T.R., Harms, H., Maskow, T., (2012):
Chip-calorimetry provides real time insights into the inactivation of biofilms by predatory bacteria
Biofouling 28 (3), 351 - 362
full text (doi) - Furuno, S., Foss, S., Wild, E., Jones, K.C., Semple, K.T., Harms, H., Wick, L.Y., (2012):
Mycelia promote active transport and spatial dispersion of polycyclic aromatic hydrocarbons
Environ. Sci. Technol. 46 (10), 5463 - 5470
full text (doi) - Furuno, S., Remer, R., Chatzinotas, A., Harms, H., Wick, L.Y., (2012):
Use of mycelia as paths for the isolation of contaminant-degrading bacteria from soil
Microb. Biotechnol. 5 (1), 142 - 148
full text (doi) - Gharasoo, M., Centler, F., Regnier, P., Harms, H., Thullner, M., (2012):
A reactive transport modeling approach to simulate biogeochemical processes in pore structures with pore-scale heterogeneities
Environ. Modell. Softw. 30 (1), 102 - 114
full text (doi) - Günther, S., Koch, C., Hübschmann, T., Röske, I., Müller, R., Bley, T., Harms, H., Müller, S., (2012):
Correlation of community dynamics and process parameters as a tool for the prediction of the stability of wastewater treatment
Environ. Sci. Technol. 46 (1), 84 - 92
full text (doi) - Hanzel, J., Thullner, M., Harms, H., Wick, L.Y., (2012):
Walking the tightrope of bioavailability: growth dynamics of PAH degraders on vapour-phase PAH
Microb. Biotechnol. 5 (1), 79 - 86
full text (doi) - Kopinke, F.-D., Harms, H., (2012):
BuildMoNa's fourth year - a principal investigator's view. Different perspectives on the same matter
BuildMoNa : graduate school Building with Molecules and Nano-objects. Annual report 2011
Universität Leipzig, Leipzig, p. 88 - 89 - Maskow, T., Wolf, K., Kunze, W., Enders, S., Harms, H., (2012):
Rapid analysis of bacterial contamination of tap water using isothermal calorimetry
Thermochim. Acta 543 , 273 - 280
full text (doi) - Przybylski, D., Rohwerder, T., Harms, H., Müller, R.H., (2012):
Third-generation feed stocks for the clean and sustainable biotechnological production of bulk chemicals: synthesis of 2-hydroxyisobutyric acid
Energy Sustain. Soc. 2 , art. 11
full text (doi) - Saleem, M., Fetzer, I., Dormann, C.F., Harms, H., Chatzinotas, A., (2012):
Predator richness increases the effect of prey diversity on prey yield
Nat. Commun. 3 , art. 1305
full text (doi) - Schäfer, F., Schuster, J., Würz, B., Härtig, C., Harms, H., Müller, R.H., Rohwerder, T., (2012):
Synthesis of short-chain diols and unsaturated alcohols from secondary alcohol substrates by the Rieske nonheme mononuclear iron oxygenase MdpJ
Appl. Environ. Microb. 78 (17), 6280 - 6284
full text (doi) - Schulz, S., Giebler, J., Chatzinotas, A., Wick, L.Y., Fetzer, I., Welzl, G., Harms, H., Schloter, M., (2012):
Plant litter and soil type drive abundance, activity and community structure of alkB harbouring microbes in different soil compartments
ISME J. 6 (9), 1763 - 1774
full text (doi) - Schuster, J., Schäfer, F., Hübler, N., Brandt, A., Rosell, M., Härtig, C., Harms, H., Müller, R.H., Rohwerder, T., (2012):
Bacterial degradation of tert-amyl alcohol proceeds via hemiterpene 2-methyl-3-buten-2-ol by employing the tertiary alcohol desaturase function of the Rieske nonheme mononuclear iron oxygenase MdpJ
J. Bacteriol. 194 (5), 972 - 981
full text (doi) - Siegfried, K., Endes, C., Bhuiyan, A.F.M.K., Kuppardt, A., Mattusch, J., van der Meer, J.R., Chatzinotas, A., Harms, H., (2012):
Field testing of arsenic in groundwater samples of Bangladesh using a test kit based on lyophilized bioreporter bacteria
Environ. Sci. Technol. 46 (6), 3281 - 3287
full text (doi) - Solé, M., Müller, I., Pecyna, M.J., Fetzer, I., Harms, H., Schlosser, D., (2012):
Differential regulation by organic compounds and heavy metals of multiple laccase genes in the aquatic hyphomycete Clavariopsis aquatica
Appl. Environ. Microb. 78 (13), 4732 - 4739
full text (doi) - Taubert, M., Vogt, C., Wubet, T., Kleinsteuber, S., Tarkka, M.T., Harms, H., Buscot, F., Richnow, H.-H., von Bergen, M., Seifert, J., (2012):
Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium
ISME J. 6 (12), 2291 - 2301
full text (doi) - Tischer, K., Zeder, M., Klug, R., Pernthaler, J., Schattenhofer, M., Harms, H., Wendeberg, A., (2012):
Fluorescence in situ hybridization (CARD-FISH) of microorganisms in hydrocarbon contaminated aquifer sediment samples
Syst. Appl. Microbiol. 35 (8), 526 - 532
full text (doi) - Yaneva, N., Schuster, J., Schäfer, F., Lede, V., Przybylski, D., Paproth, T., Harms, H., Müller, R.H., Rohwerder, T., (2012):
Bacterial acyl-CoA mutase specifically catalyzes coenzyme B12-dependent isomerization of 2-hydroxyisobutyryl-CoA and (S)-3-hydroxybutyryl-CoA
J. Biol. Chem. 287 (19), 15502 - 15511
full text (doi)
- Banitz, T., Fetzer, I., Johst, K., Wick, L.Y., Harms, H., Frank, K., (2011):
Assessing biodegradation benefits from dispersal networks
Ecol. Model. 222 (14), 2552 - 2560
full text (doi) - Banitz, T., Wick, L.Y., Fetzer, I., Frank, K., Harms, H., Johst, K., (2011):
Dispersal networks for enhancing bacterial degradation in heterogeneous environments
Environ. Pollut. 159 (10), 2781 - 2788
full text (doi) - Bombach, P., Hübschmann, T., Fetzer, I., Kleinsteuber, S., Geyer, R., Harms, H., Müller, S., (2011):
Resolution of natural microbial community dynamics by community fingerprinting, flow cytometry, and trend interpretation analysis
In: Müller, S., Bley, T., (eds.)
High resolution microbial single cell analytics
Adv. Biochem. Eng. Biotechnol. 124
Springer, Berlin, Heidelberg, p. 151 - 181
full text (doi) - Hanzel, J., Thullner, M., Harms, H., Wick, L.Y., (2011):
Microbial growth with vapor-phase substrate
Environ. Pollut. 159 (4), 858 - 864
full text (doi) - Harms, H., Schlosser, D., Wick, L.Y., (2011):
Untapped potential: exploiting fungi in bioremediation of hazardous chemicals
Nat. Rev. Microbiol. 9 (3), 177 - 192
full text (doi) - Kuppardt, A., Harms, H., (2011):
Bakterien zum Nachweis von Arsen in Trinkwasser
Biospektrum 17 (3), 284 - 286
full text (doi) - Maskow, T., Schubert, T., Wolf, A., Buchholz, F., Regestein, L., Buechs, J., Mertens, F., Harms, H., Lerchner, J., (2011):
Potentials and limitations of miniaturized calorimeters for bioprocess monitoring
Appl. Microbiol. Biotechnol. 92 (1), 55 - 66
full text (doi) - Oroszi, S., Jakob, T., Wilhelm, C., Harms, H., Maskow, T., (2011):
Photosynthetic energy conversion in the diatom Phaeodactylum tricornutum. Measuring by calorimetry, oxygen evolution and pulse-amplitude modulated fluorescence
J. Therm. Anal. Calorim. 104 (1), 223 - 231
full text (doi) - Sander, S.G., Hunter, K.A., Harms, H., Wells, M., (2011):
Numerical approach to speciation and estimation of parameters used in modeling trace metal bioavailability
Environ. Sci. Technol. 45 (15), 6388 - 6395
full text (doi) - Schäfer, F., Muzica, L., Schuster, J., Treuter, N., Rosell, M., Harms, H., Müller, R.H., Rohwerder, T., (2011):
Formation of alkenes via degradation of tert-alkyl ethers and alcohols by Aquincola tertiaricarbonis L108 and Methylibium spp.
Appl. Environ. Microb. 77 (17), 5981 - 5987
full text (doi) - Schäwe, R., Fetzer, I., Tönniges, A., Härtig, C., Geyer, W., Harms, H., Chatzinotas, A., (2011):
Evaluation of FT-IR spectroscopy as a tool to quantify bacteria in binary mixed cultures
J. Microbiol. Methods 86 (2), 182 - 187
full text (doi) - Smith, K.E.C., Thullner, M., Wick, L.Y., Harms, H., (2011):
Dissolved organic carbon enhances the mass transfer of hydrophobic organic compounds from nonaqueous phase liquids (NAPLs) into the aqueous phase
Environ. Sci. Technol. 45 (20), 8741 - 8747
full text (doi) - Ziganshin, A.M., Schmidt, T., Scholwin, F., Il'inskaya, O.N., Harms, H., Kleinsteuber, S., (2011):
Bacteria and archaea involved in anaerobic digestion of distillers grains with solubles
Appl. Microbiol. Biotechnol. 89 (6), 2039 - 2052
full text (doi)
- Altenburger, R., Berns, A.E., Bittens, M., Brack, W., Burauel, P., Centler, F., Daus, B., Goss, K.-U., Harms, H., Kopinke, F.-D., Kühnel, D., Liess, M., Mackenzie, K., Miltner, A., Thullner, M., Wennrich, R., Wick, L.Y., (2010):
Chemicals in the environment (CITE). Report of the First Annual Conference of the Helmholtz research topic CITE
UWSF 22 (4), 502 - 506
full text (doi) - Buchholz, F., Harms, H., Maskow, T., (2010):
Biofilm research using calorimetry - a marriage made in heaven?
Biotechnol. J. 5 (12), 1339 - 1350
full text (doi) - Buchholz, F., Wolf, A., Lerchner, J., Mertens, F., Harms, H., Maskow, T., (2010):
Chip calorimetry for fast and reliable evaluation of bactericidal and bacteriostatic treatments of biofilms
Antimicrob. Agents Chemother. 54 (1), 312 - 319
full text (doi) - Deepthike, H.U., Tecon, R., van Kooten, G.K., van der Meer, J.R., Harms, H., Wells, M., Short, J., (2010):
Response to comment on "Unlike PAHs from Exxon Valdez Crude Oil, PAHs from Gulf of Alaska Coals are not Readily Bioavailable"
Environ. Sci. Technol. 44 (6), 2212 - 2213
full text (doi) - Fetzer, I., Jehmlich, N., Vogt, C., Richnow, H.H., Seifert, J., Harms, H., von Bergen, M., Schmidt, F., (2010):
Calculation of partial isotope incorporation into peptides measured by mass spectrometry
BMC Res. Notes 3 , art. 178
full text (doi) - Furuno, S., Päzolt, K., Rabe, C., Neu, T.R., Harms, H., Wick, L.Y., (2010):
Fungal mycelia allow chemotactic dispersal of polycyclic aromatic hydrocarbon-degrading bacteria in water-unsaturated systems
Environ. Microbiol. 12 (6), 1391 - 1398
full text (doi) - Hanzel, J., Harms, H., Wick, L., (2010):
Bacterial chemotaxis along vapor-phase gradients of naphthalene
Environ. Sci. Technol. 44 (24), 9304 - 9310
full text (doi) - Harms, H., Smith, K.E.C., Wick, L.Y., (2010):
Microorganism-hydrophobic compound interactions
In: Timmis, K.N., McGenity, T., van den Meer, J.R., de Lorenzo, V., (eds.)
Microbial utilization of hydrocarbons, oils and lipids
Handbook of Hydrocarbon and Lipid Microbiology Vol. 2, Part 7
Springer International Publishing, Cham, p. 1479 - 1490
full text (doi) - Harms, H., Smith, K.E.C., Wick, L.Y., (2010):
Introduction: problems of hydrophobicity/bioavailability
In: Timmis, K.N., McGenity, T., van den Meer, J.R., de Lorenzo, V., (eds.)
Microbial utilization of hydrocarbons, oils and lipids
Handbook of Hydrocarbon and Lipid Microbiology Vol. 2, Part 7
Springer International Publishing, Cham, p. 1439 - 1450
full text (doi) - Harms, H., Wick, L.Y., Smith, K.E.C., (2010):
Matrix-hydrophobic compound interactions
In: Timmis, K.N., McGenity, T., van den Meer, J.R., de Lorenzo, V., (eds.)
Microbial utilization of hydrocarbons, oils and lipids
Handbook of Hydrocarbon and Lipid Microbiology Vol. 2, Part 7
Springer International Publishing, Cham, p. 1467 - 1478
full text (doi) - Harms, H., Wick, L.Y., (2010):
Determining the tendency of microorganisms to interact with hydrocarbon phases
In: Timmis, K.N., McGenity, T., van den Meer, J.R., de Lorenzo, V., (eds.)
Experimantal protocols and appendices
Handbook of Hydrocarbon and Lipid Microbiology Vol. 5, Part 2
Springer International Publishing, Cham, p. 3631 - 3639
full text (doi) - Hesse, F., Harms, H., Attinger, S., Thullner, M., (2010):
Linear exchange model for the description of mass transfer limited bioavailability at the pore scale
Environ. Sci. Technol. 44 (6), 2064 - 2071
full text (doi) - Hölscher, T., Breuer, U., Adrian, L., Harms, H., Maskow, T., (2010):
Production of the chiral compound (R)-3-Hydroxybutyrate by a genetically engineered methylotrophic bacterium
Appl. Environ. Microb. 76 (16), 5585 - 5591
full text (doi) - Jehmlich, N., Fetzer, I., Seifert, J., Mattow, J., Vogt, C., Harms, H., Thiede, B., Richnow, H.H., von Bergen, M., Schmidt, F., (2010):
Decimal place slope: a fast and precise method for quantifying 13C incorporation levels for detecting the metabolic activity of microbial species
Mol. Cell. Proteomics 9 (6), 1221 - 1227
full text (doi) - Jehmlich, N., Kleinsteuber, S., Vogt, C., Benndorf, D., Harms, H., Schmidt, F., von Bergen, M., Seifert, J., (2010):
Phylogenetic and proteomic analysis of an anaerobic toluene-degrading community
J. Appl. Microbiol. 109 (6), 1937 - 1945
full text (doi) - Jousset, A., Lara, E., Nikolausz, M., Harms, H., Chatzinotas, A., (2010):
Application of the denaturing gradient gel electrophoresis (DGGE) technique as an efficient diagnostic tool for ciliate communities in soil
Sci. Total Environ. 408 (5), 1221 - 1225
full text (doi) - Kuppardt, A., Vetterlein, D., Harms, H., Chatzinotas, A., (2010):
Visualisation of gradients in arsenic concentrations around individual roots of Zea mays L. using agar-immobilized bioreporter bacteria
Plant Soil 329 (1-2), 295 - 306
full text (doi) - Leibeling, S., Schmidt, F., Jehmlich, N., von Bergen, M., Müller, R.H., Harms, H., (2010):
Declining capacity of starving Delftia acidovorans MC1 to degrade phenoxypropionate herbicides correlates with oxidative modification of the initial enzyme
Environ. Sci. Technol. 44 (10), 3793 - 3799
full text (doi) - Leibeling, S., Taubert, M., Seifert, J., von Bergen, M., Harms, H., Müller, R.H., (2010):
Adaptation of the herbicide-degrading strain Delftia acidovorans MC1 through carbonylation of RdpA as key enzyme
J. Biotechnol. 150 (Suppl. 1), S262 - S263
full text (doi) - Mariana, F., Buchholz, F., Harms, H., Yong, Z., Yao, J., Maskow, T., (2010):
Isothermal titration calorimetry - A new method for the quantification of microbial degradation of trace pollutants
J. Microbiol. Methods 82 (1), 42 - 48
full text (doi) - Maskow, T., Kemp, R., Buchholz, F., Schubert, T., Kiesel, B., Harms, H., (2010):
What heat is telling us about microbial conversions in nature and technology: from chip- to megacalorimetry
Microb. Biotechnol. 3 (3), 269 - 284
full text (doi) - Maskow, T., Kiesel, B., Schubert, T., Yong, Z., Harms, H., Yao, J., (2010):
Calorimetric real time monitoring of lambda prophage induction
J. Virol. Methods 168 (1-2), 126 - 132
full text (doi) - Müller, S., Harms, H., Bley, T., (2010):
Origin and analysis of microbial population heterogeneity in bioprocesses
Curr. Opin. Biotechnol. 21 (1), 100 - 113
full text (doi) - Przybylski, D., Yaneva, N., Harms, H., Rohwerder, T., Müller, R.H., (2010):
Functional expression of 2-hydroxyisobutyryl-coa mutase in different E. coli derivatives
J. Biotechnol. 150 (Suppl. 1), S258
full text (doi) - Schäfer, F., Harms, H., Rohwerder, T., Müller, R.H., (2010):
Microbial synthesis of chiral alcohols using a novel monooxygenase
J. Biotechnol. 150 (Suppl. 1), S356
full text (doi) - Settele, J., Kopinke, F.-D., Harms, H., (2010):
Comment #9339 to "Science favoured by German coalition" by A. Abbott, Nature 462, 24 (2009). Published online by Nature at 20.01.2010
full text (url) - Sträuber, H., Hübschmann, T., Jehmlich, N., Schmidt, F., von Bergen, M., Harms, H., Müller, S., (2010):
NBDT (3-(N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino)-3-toluene) - A novel fluorescent dye for studying mechanisms of toluene uptake into vital bacteria
Cytom. Part A 77A (2), 113 - 120
full text (doi) - Wick, L.Y., Buchholz, F., Fetzer, I., Kleinsteuber, S., Härtig, C., Shi, L., Miltner, A., Harms, H., Pucci, G.N., (2010):
Responses of soil microbial communities to weak electric fields
Sci. Total Environ. 408 (20), 4886 - 4893
full text (doi) - Wick, L.Y., Furuno, S., Harms, H., (2010):
Fungi as transport vectors for contaminants and contaminant-degrading bacteria
In: Timmis, K.N., McGenity, T., van den Meer, J.R., de Lorenzo, V., (eds.)
Microbial utilization of hydrocarbons, oils and lipids
Handbook of Hydrocarbon and Lipid Microbiology Vol. 2, Part 8
Springer International Publishing, Cham, p. 1555 - 1561
full text (doi)
- Deepthike, H.U., Tecon, R., van Kooten, G., van der Meer, J.R., Harms, H., Wells, M., Short, J., (2009):
Unlike PAHs from Exxon Valdez Crude Oil, PAHs from Gulf of Alaska Coals are not readily bioavailable
Environ. Sci. Technol. 43 (15), 5864 - 5870
full text (doi) - Günther, S., Trutnau, M., Kleinsteuber, S., Hause, G., Bley, T., Röske, I., Harms, H., Müller, S., (2009):
Dynamics of polyphosphate-accumulating bacteria in wastewater treatment plant microbial communities detected via DAPI (4',6'-diamidino-2-phenylindole) and tetracycline labeling
Appl. Environ. Microb. 75 (7), 2111 - 2121
full text (doi) - Heine, F., Stahl, F., Sträuber, H., Wiacek, C., Benndorf, D., Repenning, C., Schmidt, F., Scheper, T., von Bergen, M., Harms, H., Müller, S., (2009):
Prediction of flocculation ability of brewing yeast inoculates by flow cytometry, proteome analysis, and mRNA profiling
Cytom. Part A 75A (2), 140 - 147
full text (doi) - Kampara, M., Thullner, M., Harms, H., Wick, L.Y., (2009):
Impact of cell density on microbially induced stable isotope fractionation
Appl. Microbiol. Biotechnol. 81 (5), 977 - 985
full text (doi) - Kuppardt, A., Chatzinotas, A., Breuer, U., van der Meer, J.R., Harms, H., (2009):
Optimization of preservation conditions of As (III) bioreporter bacteria
Appl. Microbiol. Biotechnol. 82 (4), 785 - 792
full text (doi) - Müller, S., Vogt, C., Laube, M., Harms, H., Kleinsteuber, S., (2009):
Community dynamics within a bacterial consortium during growth on toluene under sulfate-reducing conditions
FEMS Microbiol. Ecol. 70 (3), 586 - 596
full text (doi) - Schleinitz, K.M., Schmeling, S., Jehmlich, N., von Bergen, M., Harms, H., Kleinsteuber, S., Vogt, C., Fuchs, G., (2009):
Phenol degradation in the strictly anaerobic iron-reducing bacterium Geobacter metallireducens GS-15
Appl. Environ. Microb. 75 (12), 3912 - 3919
full text (doi) - Smith, K.E.C., Thullner, M., Wick, L.Y., Harms, H., (2009):
Sorption to humic acids enhances polycyclic aromatic hydrocarbon biodegradation
Environ. Sci. Technol. 43 (19), 7205 - 7211
full text (doi) - Sträuber, H., Hübschmann, T., Harms, H., Müller, S., (2009):
Screening of potential toluene degraders in communities using a novel fluorescent toluene analogue and flow cytometry
Cytom. Part A 75A (8), 717
full text (doi) - Thullner, M., Kampara, M., Richnow, H.H., Harms, H., Wick, L.Y., (2009):
Stable isotope fractionation as a tool to determine substrate bioavailability
Geochim. Cosmochim. Acta 73 (13 Suppl.), A1329
full text (doi)
- Günther, S., Hübschmann, T., Rudolf, M., Eschenhagen, M., Röske, I., Harms, H., Müller, S., (2008):
Fixation procedures for flow cytometric analysis of environmental bacteria
J. Microbiol. Methods 75 (1), 127 - 134
full text (doi) - Kampara, M., Thullner, M., Richnow, H.H., Harms, H., Wick, L.Y., (2008):
Impact of bioavailability restrictions on microbially induced stable isotope fractionation. 2. Experimental evidence
Environ. Sci. Technol. 42 (17), 6552 - 6558
full text (doi) - Kleinsteuber, S., Müller, F.D., Chatzinotas, A., Wendt-Potthoff, K., Harms, H., (2008):
Diversity and in situ quantification of Acidobacteria subdivision 1 in an acidic mining lake
FEMS Microbiol. Ecol. 63 (1), 107 - 117
full text (doi) - Kleinsteuber, S., Schleinitz, K.M., Breitfeld, J., Harms, H., Richnow, H.H., Vogt, C., (2008):
Molecular characterization of bacterial communities mineralizing benzene under sulfate-reducing conditions
FEMS Microbiol. Ecol. 66 (1), 143 - 157
full text (doi) - Kohlmeier, S., Mancuso, M., Deepthike, U., Tecon, R., van der Meer, J.R., Harms, H., Wells, M., (2008):
Comparison of naphthalene bioavailability determined by whole-cell biosensing and availability determined by extraction with Tenax
Environ. Pollut. 156 (3), 803 - 808
full text (doi) - Lerchner, J., Wolf, A., Buchholz, F., Mertens, F., Neu, T.R., Harms, H., Maskow, T., (2008):
Miniaturized calometry - a new method for real-time biofilm activity analysis
J. Microbiol. Methods 74 (2-3), 74 - 81
full text (doi) - Maskow, T., Röllich, A., Fetzer, I., Ackermann, J.-U., Harms, H., (2008):
On-line monitoring of lipid storage in yeasts using impedance spectroscopy
J. Biotechnol. 135 (1), 64 - 70
full text (doi) - Maskow, T., Röllich, A., Fetzer, I., Yao, J., Harms, H., (2008):
Observation of non-linear biomass-capacitance correlations: reasons and implications for bioprocess control
Biosens. Bioelectron. 24 (1), 123 - 128
full text (doi) - Mothes, G., Schubert, T., Harms, H., Maskow, T., (2008):
Biotechnological coproduction of compatible solutes and polyhydroxyalkanoates using the genus Halomonas
Eng. Life Sci. 8 (6), 658 - 662
full text (doi) - Müller, R.H., Rohwerder, T., Harms, H., (2008):
Degradation of fuel oxygenates and their main intermediates by Aquincola tertiaricarbonis L108
Microbiology-(UK) 154 (5), 1414 - 1421
full text (doi) - Pawelczyk, S., Abraham, W.-R., Harms, H., Müller, S., (2008):
Community-based degradation of 4-chorosalicylate tracked on the single cell level
J. Microbiol. Methods 75 (1), 117 - 126
full text (doi) - Peitzsch, M., Kiesel, B., Harms, H., Maskow, T., (2008):
Real time analysis of Escherichia coli biofilms using calorimetry
Chem. Eng. Process. 47 (6), 1000 - 1006
full text (doi) - Shi, L., Harms, H., Wick, L.Y., (2008):
Electroosmotic flow stimulates the release of alginate-bound phenanthrene
Environ. Sci. Technol. 42 (6), 2105 - 2110
full text (doi) - Shi, L., Müller, S., Harms, H., Wick, L.Y., (2008):
Effect of electrokinetic transport on the vulnerability of PAH-degrading bacteria in a model aquifer
Environ. Geochem. Health 30 (2), 177 - 182
full text (doi) - Shi, L., Müller, S., Harms, H., Wick, L.Y., (2008):
Factors influencing the electrokinetic dispersion of PAH-degrading bacteria in a laboratory model aquifer
Appl. Microbiol. Biotechnol. 80 (3), 507 - 515
full text (doi) - Shi, L., Müller, S., Loffhagen, N., Harms, H., Wick, L.Y., (2008):
Activity and viability of polycyclic aromatic hydrocarbon-degrading Sphingomonas sp. LB126 in a DC-electrical field typical for electrobioremediation measures
Microb. Biotechnol. 1 (1), 53 - 61
full text (doi) - Solé, M., Chatzinotas, A., Sridhar, K.R., Harms, H., Krauss, G., (2008):
Improved coverage of fungal diversity in polluted groundwaters by semi-nested PCR
Sci. Total Environ. 406 (1-2), 324 - 330
full text (doi) - Solé, M., Fetzer, I., Wennrich, R., Sridhar, K.R., Harms, H., Krauss, G., (2008):
Aquatic hyphomycete communities as potential bioindicators for assessing anthropogenic stress
Sci. Total Environ. 389 (2-3), 557 - 565
full text (doi) - Thullner, M., Kampara, M., Richnow, H.H., Harms, H., Wick, L.Y., (2008):
Impact of bioavailability restrictions on microbially induced stable isotope fractionation. 1. Theoretical calculation
Environ. Sci. Technol. 42 (17), 6544 - 6551
full text (doi) - Wackwitz, A., Harms, H., Chatzinotas, A., Breuer, U., Vogne, C., van der Meer, J.R., (2008):
Internal arsenite bioassay calibration using multiple bioreporter cell lines
Microb. Biotechnol. 1 (2), 149 - 157
full text (doi)
- Achilles, J., Repenning, C., Harms, H., Stahl, F., Müller, S., (2007):
Physiology of living individual Saccharomyces cerevisiae cells - Investigation on cellular and molecular level
Cytom. Part A 71A (9), 760
full text (doi) - Achilles, J., Stahl, F., Harms, H., Müller, S., (2007):
Isolation of intact RNA from cytometrically sorted Saccharomyces cerevisiae for the analysis of intrapopulation diversity of gene expression
Nat. Protoc. 2 (9), 2203 - 2211
full text (doi) - Benndorf, D., Balcke, G.U., Harms, H., von Bergen, M., (2007):
Functional metaproteome analysis of protein extracts from contaminated soil and groundwater
ISME J. 1 (3), 224 - 234
full text (doi) - Buchholz, F., Wick, L.Y., Harms, H., Maskow, T., (2007):
The kinetics of polycyclic aromatic hydrocarbon (PAH) biodegradation assessed by isothermal titration calorimetry (ITC)
Thermochim. Acta 458 (1-2), 47 - 53
full text (doi) - Busam, S., McNabb, M., Wackwitz, A., Senevirathna, W., Beggah, S., van der Meer, J., Wells, M., Breuer, U., Harms, H., (2007):
Artificial neural network study of whole-cell bacterial bioreporter response determined using fluorescence flow cytometry
Anal. Chem. 79 (23), 9107 - 9114
full text (doi) - Günther, S., Geyer, W., Harms, H., Müller, S., (2007):
Fluorogenic surrogate substrates for toluene-degrading bacteria - are they useful for activity analysis?
J. Microbiol. Methods 70 (2), 272 - 283
full text (doi) - Harms, H., (2007):
Biosensing of heavy metals
In: Nies, D.H., Silver, S., (eds.)
Molecular microbiology of heavy metals
Microbiology Monographs 6
Springer, Berlin, Heidelberg, New York, p. 143 - 157
full text (doi) - Harvey, R.W., Harms, H., Landkamer, L., (2007):
Transport of microorganisms in the terrestrial subsurface: in situ and laboratory methods
In: Hurst, C.J., Crawford, R.L., Garland, J.L., Lipson, D.A., Mills, A.L., (eds.)
Manual of environmental microbiology. 3rd ed.
ASM Press, Washington, DC, p. 872 - 897 - Heine, F., Wiacek, C., Benndorf, D., Sträuber, H., Stahl, F., von Bergen, M., Harms, H., Müller, S., (2007):
Evidence of flocculation in brewing yeast strains by flow cytometry, proteome and mRNA profiling
Cytom. Part A 71A (9), 761
full text (doi) - Heine, F., Wiacek, C., Benndorf, D., Sträuber, H., Stahl, F., von Bergen, M., Harms, H., Müller, S., (2007):
Evidence of flocculation in brewing yeast strains by flow cytometry, proteome and mRNA profiling
Cytom. Part A 71A (7), 513
full text (doi) - Hübschmann, T., Vogt, C., Till, S., Rohwerder, T., Sand, W., Harms, H., Müller, S., (2007):
Detection of sulfur microparticles in bacterial cultures by flow cytometry
Eng. Life Sci. 7 (4), 403 - 407
full text (doi) - Kohlmeier, S., Mancuso, M., Tecon, R., Harms, H., van der Meer, J.R., Wells, M., (2007):
Bioreporters: gfp versus lux revisited and single-cell response
Biosens. Bioelectron. 22 (8), 1578 - 1585
full text (doi) - Lara, E., Berney, C., Ekelund, F., Harms, H., Chatzinotas, A., (2007):
Molecular comparison of cultivable protozoa from a pristine and a polycyclic aromatic hydrocarbon polluted site
Soil Biol. Biochem. 39 (1), 139 - 148
full text (doi) - Lara, E., Berney, C., Harms, H., Chatzinotas, A., (2007):
Cultivation-independent analysis reveals a shift in ciliate 18S rRNA gene diversity in a polycyclic aromatic hydrocarbon-polluted soil
FEMS Microbiol. Ecol. 62 (3), 365 - 373
full text (doi) - Loffhagen, N., Härtig, C., Geyer, W., Voyevoda, M., Harms, H., (2007):
Competition between cis, trans and cyclopropane fatty acid formation and its impact on membrane fluidity
Eng. Life Sci. 7 (1), 67 - 74
full text (doi) - Müller, R.H., Rohwerder, T., Harms, H., (2007):
Carbon conversion efficiency and limits of productive bacterial degradation of methyl tert-butyl ether and related compounds
Appl. Environ. Microb. 73 (6), 1783 - 1791
full text (doi) - Müller, R.H., Rohwerder, T., Harms, H., (2007):
A stoichiometric and kinetic model for the growth-associated microbial degradation of MTBE/ETBE
In: Bastiaens, L., (ed.)
MTBE & other fuel oxygenates : proceedings of the 3rd European Conference, Antwerp, June 7-8, 2007
Vito, Mol, p. 33 - 37 - Parsons, J., Belzunce Segarra, M.J., Cornelissen, G., Gustafsson, Ö., Harms, H., Janssen, C.R., Kukkonen, J., van Noort, P., Ortega Calvo, J.J., Solaun Etxeberria, O., (2007):
Characterisation of contaminants in sediments - effects of bioavailability on impact
In: Barceló, D., Petrovic, M., (eds.)
Sediment quality and impact assessment of pollutants
Sustainable Management of Sediment Resources Vol. 1
Elsevier, Amsterdam, p. 35 - 60
full text (doi) - Ramig, S., Vogt, C., Kleinsteuber, S., Hübschmann, T., Harms, H., Müller, S., (2007):
Populations profiles of the BTEX degrading enrichment culture L-D1 under balanced and non balanced growth conditions
Cytom. Part A 71A (9), 760
full text (doi) - Santos, P.M., Roma, V., Benndorf, D., von Bergen, M., Harms, H., Sá-Correia, I., (2007):
Mechanistic insights into the global response to phenol in the phenol-biodegrading strain Pseudomonas sp. M1 revealed by quantitative proteomics
OMICS 11 (3), 233 - 251
full text (doi) - Schäfer, F., Breuer, U., Benndorf, D., von Bergen, M., Harms, H., Müller, R.H., (2007):
Growth of Aquincola tertiaricarbonis L108 on tert-butyl alcohol leads to the induction of a phthalate dioxygenase-related protein and its associated oxidoreductase subunit
Eng. Life Sci. 7 (5), 512 - 519
full text (doi) - Schubert, T., Breuer, U., Harms, H., Maskow, T., (2007):
Calorimetric bioprocess monitoring by small modifications to a standard bench-scale bioreactor
J. Biotechnol. 130 (1), 24 - 31
full text (doi) - Schubert, T., Maskow, T., Benndorf, D., Harms, H., Breuer, U., (2007):
Continuous synthesis and excretion of the compatible solute ectoine by a transgenic, nonhalophilic bacterium
Appl. Environ. Microb. 73 (10), 3343 - 3347
full text (doi) - Schumer, D., Breuer, U., Harms, H., Maskow, T., (2007):
Thermokinetic analysis reveals the complex growth and haloadaptation pattern of the non-conventional yeast Debaryomyces hansenii
Eng. Life Sci. 7 (4), 322 - 330
full text (doi) - Semple, K.T., Doick, K.J., Wick, L.Y., Harms, H., (2007):
Microbial interactions with organic contaminants in soil: definitions, processes and measurement
Environ. Pollut. 150 (1), 166 - 176
full text (doi) - Shi, L., Günther, S., Hübschmann, T., Wick, L.Y., Harms, H., Müller, S., (2007):
Limits of propidium iodide as a cell viability indicator for environmental bacteria
Cytom. Part A 71A (8), 592 - 598
full text (doi) - Shi, L., Wick, L.Y., Günther, S., Harms, H., Müller, S., (2007):
Flow cytometry analysis of the viability of pollutant degrading bacteria exposed to weak electric fields
Cytom. Part A 71A (1), 52 - 53
full text (doi) - Wick, L.Y., Remer, R., Würz, B., Reichenbach, J., Braun, S., Schäfer, F., Harms, H., (2007):
Effect of fungal hyphae on the access of bacteria to phenanthrene in soil
Environ. Sci. Technol. 41 (2), 500 - 505
full text (doi) - Wick, L.Y., Shi, L., Harms, H., (2007):
Electro-bioremediation of hydrophobic organic soil-contaminants: a review of fundamental interactions
Electrochim. Acta 52 (10), 3441 - 3448
full text (doi)
- Achilles, J., Harms, H., Müller, S., (2006):
Analysis of living S. cerevisiae cell states - a three color approach
Cytom. Part A 69A (3), 173 - 177
full text (doi) - Benndorf, D., Thiersch, M., Loffhagen, N., Kunath, C., Harms, H., (2006):
Pseudomonas putida KT2440 responds specifically to chlorophenoxy herbicides and their initial metabolites
Proteomics 6 (11), 3319 - 3329
full text (doi) - Boenigk, J., Pfandl, K., Garstecki, T., Harms, H., Novarino, G., Chatzinotas, A., (2006):
Evidence for geographic isolation and signs of endemism within a protistan morphospecies
Appl. Environ. Microb. 72 (8), 5159 - 5164
full text (doi) - Breuer, U., Harms, H., (2006):
Debaryomyces hansenii - an extremophilic yeast with biotechnological potential
Yeast 23 (6), 415 - 437
full text (doi) - Harms, H., Wells, M., van der Meer, J.R., (2006):
Whole-cell living biosensors - are they ready for environmental application?
Appl. Microbiol. Biotechnol. 70 (3), 273 - 280
full text (doi) - Harms, H., Wick, L.Y., (2006):
Dispersing pollutant-degrading bacteria in contaminated soil without touching it
Eng. Life Sci. 6 (3), 252 - 260
full text (doi) - Kaufmann, K., Chapman, S.J., Campbell, C.D., Harms, H., Höhener, P., (2006):
Miniaturized test system for soil respiration induced by volatile pollutants
Environ. Pollut. 140 (2), 269 - 278
full text (doi) - Kleinsteuber, S., Riis, V., Fetzer, I., Harms, H., Müller, S., (2006):
Population dynamics within a microbial consortium during growth on diesel fuel in saline environments
Appl. Environ. Microb. 72 (5), 3531 - 3542
full text (doi) - Loffhagen, N., Härtig, C., Harms, H., (2006):
Impact of membrane fatty acid composition on the uncoupling sensitivity of the energy conservation of Comamonas testosteroni ATCC 17454
Appl. Microbiol. Biotechnol. 70 (5), 618 - 624
full text (doi) - Maskow, T., Harms, H., (2006):
Real time insights into bioprocesses using calorimetry: state of the art and potential
Eng. Life Sci. 6 (3), 266 - 277
full text (doi) - Maskow, T., Lerchner, J., Peitzsch, M., Harms, H., Wolf, G., (2006):
Chip calorimetry for the monitoring of whole cell biotransformation
J. Biotechnol. 122 (4), 431 - 442
full text (doi) - Maskow, T., Müller, S., Lösche, A., Harms, H., Kemp, R., (2006):
Control of continuous polyhydroxybutyrate synthesis using calorimetry and flow cytometry
Biotechnol. Bioeng. 93 (3), 541 - 552
full text (doi) - Westendorf, A., Benndorf, D., Pribyl, T., Harms, H., Müller, R.H., (2006):
Kinetic traits and enzyme form patterns of (R)-2-(2,4-Dichlorophenoxy)propionate/a-ketoglutarate dioxygenase (RdpA) after expression in different bacterial strains
Eng. Life Sci. 6 (6), 552 - 559
full text (doi)
- Harms, H., Rime, J., Leupin, O., Hug, S.J., van der Meer, J.R., (2005):
Effect of groundwater composition on arsenic detection by bacterial biosensors
Microchim. Acta 151 (3-4), 217 - 222
full text (doi) - Harms, H., van der Meer, J.R., (2005):
Bakterielle Bioreporter für die Arsenanalytik im Trinkwasser
Laborwelt 6 (3), 22 - 24 - Härtig, C., Loffhagen, N., Harms, H., (2005):
Formation of trans fatty acids is not involved in growth-linked membrane adaptation of Pseudomonas putida
Appl. Environ. Microb. 71 (4), 1915 - 1922
full text (doi) - Johnsen, A.R., Wick, L.Y., Harms, H., (2005):
Principles of microbial PAH-degradation in soil
Environ. Pollut. 133 (1), 71 - 84
full text (doi) - Kohlmeier, S., Smits, T.H.M., Ford, R.M., Keel, C., Harms, H., Wick, L.Y., (2005):
Taking the fungal highway: mobilization of pollutant-degrading bacteria by fungi
Environ. Sci. Technol. 39 (12), 4640 - 4646
full text (doi) - Wells, M., Gösch, M., Harms, H., van der Meer, J.R., (2005):
Response characteristics of arsenic-sensitive bioreporters expressing the gfp reporter gene
Microchim. Acta 151 (3-4), 209 - 216
full text (doi) - Wells, M., Gösch, M., Rigler, R., Harms, H., Lasser, T., van der Meer, J.R., (2005):
Ultrasensitive reporter protein detection in genetically engineered bacteria
Anal. Chem. 77 (9), 2683 - 2689
full text (doi) - Wells, M., Wick, L.Y., Harms, H., (2005):
Model polymer release system study of PAH bioaccessibility: the relationship between "Rapid" release and bioaccessibility
Environ. Sci. Technol. 39 (4), 1055 - 1063
full text (doi)
- Balazs, D.J., Triandafillu, K., Wood, P., Chevolot, Y., van Delden, C., Harms, H., Hollenstein, C., Mathieu, H.J., (2004):
Inhibition of bacteriol adhesion on PVC endotracheal tubes by RF-oxygen glow discharge, sodium hydroxide and silver nitrate treatments
Biomaterials 25 (11), 2139 - 2151
full text (doi) - Gremion, F., Chatzinotas, A., Kaufmann, K., Von Sigler, W., Harms, H., (2004):
Impacts of heavy metal contamination and photoremediation on a microbial community during a twelve-month microcosm experiment
FEMS Microbiol. Ecol. 48 (2), 273 - 283
full text (doi) - Harms, H., Wick, L.Y., (2004):
Mobilisation of organic compounds and iron by microorganisms
In: van Leeuwen, H.P., Köster, W., (eds.)
Physicochemical kinetics and transport at biointerfaces
IUPAC Series on Analytical and Physical Chemistry of Environmental Systems 9
Wiley, Chichester, p. 401 - 444 - Kaufmann, K., Christophersen, M., Buttler, A., Harms, H., Höhener, P., (2004):
Microbial community response to petroleum hydrocarbon contamination in the unsaturated zone at the experimental field site Værløse, Denmark
FEMS Microbiol. Ecol. 48 (3), 387 - 399
full text (doi) - Semple, K.T., Doick, K.J., Jones, K.C., Burauel, P., Craven, A., Harms, H., (2004):
Defining bioavailability and bioaccessibility of contaminated soil and sediment is complicated
Environ. Sci. Technol. 38 (12), 229A - 231A
full text (doi) - Wells, M., Wick, L.Y., Harms, H., (2004):
Perspectives on modeling the release of hydrophobic organic contaminants drawn from model polymer release systems
J. Mater. Chem. 14 (15), 2461 - 2472
full text (doi) - Wick, L.Y., Mattle, P.A., Wattiau, P., Harms, H., (2004):
Electrokinetic transport of PAH-degrading bacteria in model aquifers and soil
Environ. Sci. Technol. 38 (17), 4596 - 4602
full text (doi)
- Balazs, D.J., Triandafillu, K., Chevolot, Y., Aronsson, B.-O., Harms, H., Descouts, P., Mathieu, H.J., (2003):
Surface modification of PVC endotracheal tubes by oxygen glow discharge to reduce bacterial adhesion
Surf. Interface Anal. 35 (3), 301 - 309
full text (doi) - Chapman, S., Buttler, A., Francez, A., Laggoun-Defarge, F., Vasander, H., Schloter, M., Combe, J., Grosvernier, P., Harms, H., Epron, D., Gilbert, D., Mitchell, E., (2003):
Exploitation of northern peatlands and biodiversity maintenance: a conflict between economy and ecology
Front. Ecol. Environ. 1 (10), 525 - 532
full text (doi) - Gremion, F., Chatzinotas, A., Harms, H., (2003):
Comparative 16S rDNA and 16S rRNA sequence analysis indicates that Actinobacteria might be a dominant part of the metabolically active bacteria in heavy metal-contaminated bulk and rhizosphere soil
Environ. Microbiol. 5 (10), 896 - 907
full text (doi) - Harms, H., (2003):
Polymer interactions in bacterial adhesion to mineral surfaces
Abstr. Paper Am. Chem. Soc. 225 , U797 - Harms, H., Volkland, H.P., Repphun, G., Hiltpolt, A., Wanner, O., Zehnder, A.J.B., (2003):
Action of chelators on solid iron in phosphate-containing aqueous solutions
Corrosion Sci. 45 (8), 1717 - 1732
full text (doi) - Höhener, P., Duwig, C., Pasteris, G., Kaufmann, K., Dakhel, N., Harms, H., (2003):
Biodegradation of petroleum hydrocarbon vapors: laboratory studies on rates and kinetics in unsaturated alluvial sand
J. Contam. Hydrol. 66 (1-2), 93 - 115
full text (doi) - Medilanski, E., Wick, L.Y., Wanner, O., Harms, H., (2003):
Mutual influences of Pseudomonas aeruginosa and Desulfovibrio desulfuricans on their adhesion to stainless steel
Biofouling 19 (2), 125 - 132
full text (doi) - Smits, T.H.M., Wick, L.Y., Harms, H., Keel, C., (2003):
Characterization of the surface hydrophobicity of filamentous fungi
Environ. Microbiol. 5 (2), 85 - 91
full text (doi) - Stocker, J., Balluch, D., Gsell, M., Harms, H., Feliciano, J., Daunert, S., Malik, K.A., van der Meer, J.R., (2003):
Development of a set of simple bacterial biosensors for quantitative and rapid measurements of arsenite and arsenate in potable water
Environ. Sci. Technol. 37 (20), 4743 - 4750
full text (doi) - Triandafillu, K., Balazs, D.J., Aronsson, B.-O., Descouts, P., Quoc, P.T., van Delden, C., Mathieu, H.J., Harms, H., (2003):
Adhesion of Pseudomonas aeruginosa strains to untreated and oxygen-plasma treated poly(vinyl chloride) (PVC) from endotracheal intubation devices
Biomaterials 24 (8), 1507 - 1518
full text (doi) - Wick, L.Y., Pasche, N., Bernasconi, S.M., Pelz, O., Harms, H., (2003):
Characterization of multiple-substrate utilization by anthracene-degrading Mycobacterium frederiksbergense LB501T
Appl. Environ. Microb. 69 (10), 6133 - 6142
full text (doi) - Wick, L.Y., Pelz, O., Bernasconi, S.M., Andersen, N., Harms, H., (2003):
Influence of the growth substrate on ester-linked phospho- and glycolipid fatty acids of PAH-degrading Mycobacterium sp. LB501T
Environ. Microbiol. 5 (8), 672 - 680
full text (doi) - Wiegel, S., Harms, H., Stachel, B., Brockmeyer, R., Schmidt, R., Aulinger, W., von Tümpling, W., (2003):
Arzneistoffe in Elbe und Saale
Arbeitsgemeinschaft für die Reinhaltung der Elbe, Potsdam, 123 pp.
- Medilanski, E., Kaufmann, K., Wick, L.Y., Wanner, O., Harms, H., (2002):
Influence of the surface topography of stainless steel on bacterial adhesion
Biofouling 18 (3), 193 - 203
full text (doi) - Reimann, C., Ginet, N., Michel, L., Keel, C., Michaux, P., Krishnapillai, V., Zala, M., Heurlier, K., Triandafillu, K., Harms, H., Defago, G., Haas, D., (2002):
Genetically programmed autoinducer destruction reduces virulence gene expression and swarming motility in Pseudomonas aeruginosa PAO1
Microbiology-(UK) 148 (4), 923 - 932
full text (doi) - Wick, L.Y., de Munain, A.R., Springael, D., Harms, H., (2002):
Erratum to "Responses of Mycobacterium sp. LB501T to the low bioavailability of solid anthracene" (vol 58, pg 378, 2002)
Appl. Microbiol. Biotechnol. 58 (5), 683 - 683
full text (doi) - Wick, L.Y., de Munain, A.R., Springael, D., Harms, H., (2002):
Responses of Mycobacterium sp. LB501T to the low bioavailability of solid anthracene
Appl. Microbiol. Biotechnol. 58 (3), 378 - 385
full text (doi) - Wick, L.Y., Wattiau, P., Harms, H., (2002):
Influence of the growth substrate on the mycolic acid profiles of mycobacteria
Environ. Microbiol. 4 (10), 612 - 616
full text (doi)
- Garcia, J.M., Wick, L.Y., Harms, H., (2001):
Influence of the nonionic surfactant Brij 35 on the bioavailability of solid and sorbed dibenzofuran
Environ. Sci. Technol. 35 (10), 2033 - 2039
full text (doi) - Jaspers, M.C.M., Meier, C., Zehnder, A.J.B., Harms, H., van der Meer, J.R., (2001):
Measuring mass transfer processes of octane with the help of an alkS-alkB::gfp-tagged Escherichia coli
Environ. Microbiol. 3 (8), 512 - 524
full text (doi) - Power, M.E., van der Meer, J.R., Harms, H., Wanner, O., (2001):
Colonization of aerobic biofilms by sulfate-reducing bacteria
Biofouling 17 (4), 275 - 288
full text (doi) - Simoni, S.F., Schäfer, A., Harms, H., Zehnder, A.J.B., (2001):
Factors affecting mass transfer limited biodegradation in saturated porous media
J. Contam. Hydrol. 50 (1-2), 99 - 120
full text (doi) - Volkland, H.P., Harms, H., Kaufmann, K., Wanner, O., Zehnder, A.J.B., (2001):
Repair of damaged vivianite coatings on mild steel using bacteria
Corrosion Sci. 43 (11), 2135 - 2146
full text (doi) - Volkland, H.P., Harms, H., Wanner, O., Zehnder, A.J.B., (2001):
Corrosion protection by anaerobiosis
Water Sci. Technol. 44 (8), 103 - 106
full text (url) - Wick, L.Y., Colangelo, T., Harms, H., (2001):
Kinetics of mass transfer-limited bacterial growth on solid PAHs
Environ. Sci. Technol. 35 (2), 354 - 361
full text (doi)