Text Publication

Accepted / in press (1)

• Fernández, I., Bouffaud, M.-L., Martínez-Medina, A., Schädler, M., Tarkka, M.T., Weinhold, A., van Dam, N.M., Herrmann, S., Buscot, F. (2024):
  Endogenous rhythmic growth and ectomycorrhizal fungi modulate priming of antiherbivore defences in subsequently formed new leaves of oak trees
  J. Ecol. 10.1111/1365-2745.14263

Articles in ISI listed journals (73)

• Albracht, C., Buscot, F., Eisenhauer, N., Gebler, A., Herrmann, S., Schmidt, A., Tarkka, M., Goldmann, K. (2025):
  Invertebrate decline has minimal effects on oak-associated microbiomes
  Environ. Microbiol. 27 (2), e70051 10.1111/1462-2920.70051
• Ghaderi, N., Ibrahim, Z., Guber, A., Khosrozadeh, S., Guliyev, V., Tarkka, M., Blagodatskaya, E. (2025):
  High-resolution sampling for enhanced spatial analysis of microbial growth and enzyme activity in the rhizosphere
  Rhizosphere 34 , art. 101062 10.1016/j.rhisph.2025.101062
• Philipp, L., Sünnemann, M., Schädler, M., Blagodatskaya, E., Tarkka, M., Eisenhauer, N., Reitz, T. (2025):
  Soil depth shapes the microbial response to land use and climate change in agroecosystems
  Appl. Soil Ecol. 209 , art. 106025 10.1016/j.apsoil.2025.106025
• Saberi Riseh, R., Fathi, F., Gholizadeh Vazvani, M., Tarkka, M.T. (2025):
  Plant colonization by biocontrol bacteria and improved plant health: A review
  Front. Biosci. 30 (1), art. 23223 10.31083/FBL23223
• Aleksza, D., Spiridon, A., Tarkka, M., Hauser, M.-T., Hann, S., Causon, T., Kratena, N., Stanetty, C., George, T.S., Russell, J., Oburger, E. (2024):
  Phytosiderophore pathway response in barley exposed to iron, zinc or copper starvation
  Plant Sci. 339 , art. 111919 10.1016/j.plantsci.2023.111919
• Rasul, M., Yahya, M., Suleman, M., Hakim, S., Mirza, B.S., Mirza, M.S., Reitz, T., Tarkka, M.T., Yasmin, S. (2024):
  Diversity and functional traits based indigenous rhizosphere associated phosphate solubilizing bacteria for sustainable production of rice
  Front. Microbiol. 15 , art. 1470019 10.3389/fmicb.2024.1470019
• Aallam, Y., Dhiba, D., El Rasafi, T., Abbas, Y., Haddioui, A., Tarkka, M., Hamdali, H. (2023):
  Assessment of two endemic rock phosphate solubilizing Streptomyces spp. on sugar beet (Beta vulgaris L.) growth under field conditions
  Sci. Hortic. 316 , art. 112033 10.1016/j.scienta.2023.112033
• Rüger, L., Ganther, M., Freudenthal, J., Jansa, J., Heintz-Buschart, A., Tarkka, M.T., Bonkowski, M. (2023):
  Root cap is an important determinant of rhizosphere microbiome assembly
  New Phytol. 239 (4), 1434 - 1448 10.1111/nph.19002
• Aallam, Y., Dhiba, D., El Rasafi, T., Lemriss, S., Haddioui, A., Tarkka, M., Hamdali, H. (2022):
  Growth promotion and protection against root rot of sugar beet (Beta vulgaris L.) by two rock phosphate and potassium solubilizing Streptomyces spp. under greenhouse conditions
  Plant Soil 472 (1-2), 407 - 420 10.1007/s11104-021-05252-w
• Ebrahimi-Zarandi, M., Saberi Riseh, R., Tarkka, M.T. (2022):
  Actinobacteria as effective biocontrol agents against plant pathogens, an overview on their role in eliciting plant defense
  Microorganisms 10 (9), art. 1739 10.3390/microorganisms10091739
• Ganther, M., Lippold, E., Bienert, M.D., Bouffaud, M.-L., Bauer, M., Baumann, L., Bienert, G.P., Vetterlein, D., Heintz-Buschart, A., Tarkka, M.T. (2022):
  Plant age and soil texture rather than the presence of root hairs cause differences in maize resource allocation and root gene expression in the field
  Plants 11 (21), art. 2883 10.3390/plants11212883
• Ganther, M., Vetterlein, D., Heintz-Buschart, A., Tarkka, M.T. (2022):
  Transcriptome sequencing analysis of maize roots reveals the effects of substrate and root hair formation in a spatial context
  Plant Soil 478 (1-2), 211 - 228 10.1007/s11104-021-04921-0
• Gebauer, L., Breitkreuz, C., Heintz-Buschart, A., Reitz, T., Buscot, F., Tarkka, M.T., Bouffaud, M.-L. (2022):
  Water deficit history selects plant beneficial soil bacteria differently under conventional and organic farming
  Front. Microbiol. 13 , art. 824437 10.3389/fmicb.2022.824437
• Jurburg, S.D., Buscot, F., Chatzinotas, A., Chaudhari, N.M., Clark, A.T., Garbowski, M., Grenié, M., Hom, E.F.Y., Karakoç, C., Marr, S., Neumann, S., Tarkka, M., van Dam, N.M., Weinhold, A., Heintz-Buschart, A. (2022):
  The community ecology perspective of omics data
  Microbiome 10 , art. 225 10.1186/s40168-022-01423-8
• Karimi, E., Aliasgharzad, N., Esfandiari, E., Hassanpouraghdam, M.B., Neu, T.R., Buscot, F., Reitz, T., Breitkreuz, C., Tarkka, M.T. (2022):
  Biofilm forming rhizobacteria affect the physiological and biochemical responses of wheat to drought
  AMB Express 12 , art. 93 10.1186/s13568-022-01432-8
• Vetterlein, D., Phalempin, M., Lippold, E., Schlüter, S., Schreiter, S., Ahmed, M.A., Carminati, A., Duddek, P., Jorda, H., Bienert, G.P., Bienert, M.D., Tarkka, M., Ganther, M., Oburger, E., Santangeli, M., Javaux, M., Vanderborght, J. (2022):
  Root hairs matter at field scale for maize shoot growth and nutrient uptake, but root trait plasticity is primarily triggered by texture and drought
  Plant Soil 478 (1-2), 119 - 141 10.1007/s11104-022-05434-0
• Yahya, M., Rasul, M., Sarwar, Y., Suleman, M., Tariq, M., Hussain, S.Z., Sajid, Z.I., Imran, A., Amin, I., Reitz, T., Tarkka, M.T., Yasmin, S. (2022):
  Designing synergistic biostimulants formulation containing autochthonous phosphate solubilizing bacteria for sustainable wheat production
  Front. Microbiol. 13 , art. 889073 10.3389/fmicb.2022.889073
• Yim, B., Ibrahim, Z., Krüger, L., Ganther, M., Maccario, L., Sørensen, S.J., Heintz-Buschart, A., Tarkka, M.T., Vetterlein, D., Bonkowski, M., Blagodatskaya, E., Smalla, K. (2022):
  Soil texture is a stronger driver of the maize rhizosphere microbiome and extracellular enzyme activities than soil depth or the presence of root hairs
  Plant Soil 478 (1-2), 229 - 251 10.1007/s11104-022-05618-8
• Aallam, Y., El Maliki, B., Dhiba, D., Lemriss, S., Souiri, A., Haddioui, A., Tarkka, M., Hamdali, H. (2021):
  Multiple potential plant growth promotion activities of endemic Streptomyces spp. from Moroccan sugar beet fields with their inhibitory activities against Fusarium spp.
  Microorganisms 9 (7), art. 1429 10.3390/microorganisms9071429
• Blagodatskaya, E., Tarkka, M., Knief, C., Koller, R., Peth, S., Schmidt, V., Spielvogel, S., Uteau, D., Weber, M., Razavi, B.S. (2021):
  Bridging microbial functional traits with localized process rates at soil interfaces
  Front. Microbiol. 12 , art. 625697 10.3389/fmicb.2021.625697
• Bonkowski, M., Tarkka, M., Razavi, B.S., Schmidt, H., Blagodatskaya, E., Koller, R., Yu, P., Knief, C., Hochholdinger, F., Vetterlein, D. (2021):
  Spatiotemporal dynamics of maize (Zea mays L.) root growth and its potential consequences for the assembly of the rhizosphere microbiota
  Front. Microbiol. 12 , art. 619499 10.3389/fmicb.2021.619499
• Breitkreuz, C., Heintz-Buschart, A., Buscot, F., Wahdan, S.F.M., Tarkka, M., Reitz, T. (2021):
  Can we estimate functionality of soil microbial communities from structure-derived predictions? A reality test in agricultural soils
  Microbiol. Spectr. 9 (1), e00278-21 10.1128/Spectrum.00278-21
• Breitkreuz, C., Herzig, L., Buscot, F., Reitz, T., Tarkka, M. (2021):
  Interactions between soil properties, agricultural management and cultivar type drive structural and functional adaptations of the wheat rhizosphere microbiome to drought
  Environ. Microbiol. 23 (10), 5866 - 5882 10.1111/1462-2920.15607
• Breitkreuz, C., Reitz, T., Schulz, E., Tarkka, M.T. (2021):
  Drought and plant community composition affect the metabolic and genotypic diversity of Pseudomonas strains in grassland soils
  Microorganisms 9 (8), art. 1677 10.3390/microorganisms9081677
• Gebauer, L., Bouffaud, M.-L., Ganther, M., Yim, B., Vetterlein, D., Smalla, K., Buscot, F., Heintz-Buschart, A., Tarkka, M. (2021):
  Soil texture, sampling depth and root hairs shape the structure of ACC deaminase bacterial community composition in maize rhizosphere
  Front. Microbiol. 12 , art. 616828 10.3389/fmicb.2021.616828
• Rasul, M., Yasmin, S., Yahya, A., Breitkreuz, C., Tarkka, M., Reitz, T. (2021):
  The wheat growth-promoting traits of Ochrobactrum and Pantoea species, responsible for solubilization of different P sources, are ensured by genes encoding enzymes of multiple P-releasing pathways
  Microbiol. Res. 246 , art. 126703 10.1016/j.micres.2021.126703
• Reuter, R., Ferlian, O., Tarkka, M., Eisenhauer, N., Pritsch, K., Simon, J. (2021):
  Tree species rather than type of mycorrhizal association drive inorganic and organic nitrogen acquisition in tree-tree interactions
  Tree Physiol. 41 (11), 2096 - 2108 10.1093/treephys/tpab059
• Tarkka, M.T., Bonkowski, M., Ge, T., Knief, C., Razavi, B.S., Vetterlein, D. (2021):
  Editorial: Rhizosphere spatiotemporal organisation
  Front. Plant Sci. 12 , art. 795136 10.3389/fpls.2021.795136
• Tarkka, M.T., Grams, T.E.E., Angay, O., Kurth, F., Maboreke, H.R., Mailänder, S., Bönn, M., Feldhahn, L., Fleischmann, F., Ruess, L., Schädler, M., Scheu, S., Schrey, S.D., Buscot, F., Herrmann, S. (2021):
  Ectomycorrhizal fungus supports endogenous rhythmic growth and corresponding resource allocation in oak during various below- and aboveground biotic interactions
  Sci. Rep. 11 , art. 23680 10.1038/s41598-021-03132-y
• Vetterlein, D., Lippold, E., Schreiter, S., Phalempin, M., Fahrenkampf, T., Hochholdinger, F., Marcon, C., Tarkka, M.T., Oburger, E., Ahmed, M., Javaux, M., Schlüter, S. (2021):
  Experimental platforms for the investigation of spatiotemporal patterns in the rhizosphere—laboratory and field scale
  J. Plant Nutr. Soil Sci. 184 (1), 35 - 50 10.1002/jpln.202000079
• Bouffaud, M.-L., Herrmann, S., Tarkka, M.T., Bönn, M., Feldhahn, L., Buscot, F. (2020):
  Oak displays common local but specific distant gene regulation responses to different mycorrhizal fungi
  BMC Genomics 21 , art. 399 10.1186/s12864-020-06806-5
• Breitkreuz, C., Buscot, F., Tarkka, M., Reitz, T. (2020):
  Shifts between and among populations of wheat rhizosphere Pseudomonas, Streptomyces and Phyllobacterium suggest consistent phosphate mobilization at different wheat growth stages under abiotic stress
  Front. Microbiol. 10 , art. 3109 10.3389/fmicb.2019.03109
• Ganther, M., Yim, B., Ibrahim, Z., Bienert, M.D., Lippold, E., Maccario, L., Sørensen, S.J., Bienert, G.P., Vetterlein, D., Heintz-Buschart, A., Blagodatskaya, E., Smalla, K., Tarkka, M.T. (2020):
  Compatibility of X-ray computed tomography with plant gene expression profiling, rhizosphere bacterial community composition and enzyme activity analyses
  J. Exp. Bot. 71 (18), 5603 - 5614 10.1093/jxb/eraa262
• Hamid, M., Reitz, T., Joseph, M.R.P., Hommel, K., Mahgoub, A., Elhassan, M.M., Buscot, F., Tarkka, M. (2020):
  Diversity and geographic distribution of soil streptomycetes with antagonistic potential against actinomycetoma-causing Streptomyces sudanensis in Sudan and South Sudan
  BMC Microbiol. 20 , art. 33 10.1186/s12866-020-1717-y
• Larras, F., Billoir, E., Scholz, S., Tarkka, M., Wubet, T., Delignette-Muller, M.-L., Schmitt-Jansen, M. (2020):
  A multi-omics concentration-response framework uncovers novel understanding of triclosan effects in the chlorophyte Scenedesmus vacuolatus
  J. Hazard. Mater. 397 , art. 122727 10.1016/j.jhazmat.2020.122727
• Bacht, M., Tarkka, M.T., Fernández López, I., Bönn, M., Brandl, R., Buscot, F., Feldhahn, L., Grams, T.E.E., Herrmann, S., Schädler, M. (2019):
  Tree response to herbivory is affected by endogenous rhythmic growth and attenuated by cotreatment with a mycorrhizal fungus
  Mol. Plant-Microbe Interact. 32 (6), 770 - 781 10.1094/MPMI-10-18-0290-R
• Graf, M., Bönn, M., Feldhahn, L., Kurth, F., Grams, T.E.E., Herrmann, S., Tarkka, M., Buscot, F., Scheu, S. (2019):
  Collembola interact with mycorrhizal fungi in modifying oak morphology, C and N incorporation and transcriptomics
  R. Soc. Open Sci. 6 (3), art. 181869 10.1098/rsos.181869
• Rasul, M., Yasmin, S., Suleman, M., Zaheer, A., Reitz, T., Tarkka, M.T., Islam, E., Mirza, M.S. (2019):
  Glucose dehydrogenase gene containing phosphobacteria for biofortification of Phosphorus with growth promotion of rice
  Microbiol. Res. 223–225 , 1 - 12 10.1016/j.micres.2019.03.004
• Ferlian, O., Biere, A., Bonfante, P., Buscot, F., Eisenhauer, N., Fernandez, I., Hause, B., Herrmann, S., Krajinski-Barth, F., Meier, I.C., Pozo, M.J., Rasmann, S., Rillig, M.C., Tarkka, M.T., van Dam, N.M., Wagg, C., Martinez-Medina, A. (2018):
  Growing research networks on mycorrhizae for mutual benefits
  Trends Plant Sci. 23 (11), 975 - 984 10.1016/j.tplants.2018.08.008
• Larras, F., Billoir, E., Baillard, V., Siberchicot, A., Scholz, S., Wubet, T., Tarkka, M., Schmitt-Jansen, M., Delignette-Muller, M.-L. (2018):
  DRomics: A turnkey tool to support the use of the dose–response framework for omics data in ecological risk assessment
  Environ. Sci. Technol. 52 (24), 14461 - 14468 10.1021/acs.est.8b04752
• Plomion, C., Aury, J.-M., Amselem, J., Leroy, T., Murat, F., Duplessis, S., Faye, S., Francillonne, N., Labadie, K., Le Provost, G., Lesur, I., Bartholomé, J., Faivre-Rampant, P., Kohler, A., Leplé, J.-C., Chantret, N., Chen, J., Diévart, A., Alaeitabar, T., Barbe, V., Belser, C., Bergès, H., Bodénès, C., Bogeat-Triboulot, M.-B., Bouffaud, M.-L., Brachi, B., Chancerel, E., Cohen, D., Couloux, A., Da Silva, C., Dossat, C., Ehrenmann, F., Gaspin, C., Grima-Pettenati, J., Guichoux, E., Hecker, A., Herrmann, S., Hugueney, P., Hummel, I., Klopp, C., Lalanne, C., Lascoux, M., Lasserre, E., Lemainque, A., Desprez-Loustau, M.-L., Luyten, I., Madoui, M.-A., Mangenot, S., Marchal, C., Maumus, F., Mercier, J., Michotey, C., Panaud, O., Picault, N., Rouhier, N., Rué, O., Rustenholz, C., Salin, F., Soler, M., Tarkka, M., Velt, A., Zanne, A.E., Martin, F., Wincker, P., Quesneville, H., Kremer, A., Salse, J. (2018):
  Oak genome reveals facets of long lifespan
  Nat. Plants 4 , 440 - 452 10.1038/s41477-018-0172-3
• Tarkka, M.T., Drigo, B., Deveau, A. (2018):
  Mycorrhizal microbiomes
  Mycorrhiza 28 (5-6), 403 - 409 10.1007/s00572-018-0865-5
• Vetterlein, D., Tarkka, M. (2018):
  Seeds with low phosphorus content: not so bad after all?
  J. Exp. Bot. 69 (21), 4993 - 4996 10.1093/jxb/ery313
• Herrmann, S., Grams, T.E.E., Tarkka, M.T., Angay, O., Bacht, M., Bönn, M., Feldhahn, L., Graf, M., Kurth, F., Maboreke, H., Mailander, S., Recht, S., Fleischmann, F., Ruess, L., Schädler, M., Scheu, S., Schrey, S., Buscot, F. (2016):
  Endogenous rhythmic growth, a trait suitable for the study of interplays between multitrophic interactions and tree development
  Perspect. Plant Ecol. Evol. Syst. 19 , 40 - 48 10.1016/j.ppees.2016.02.003
• Maboreke, H.R., Feldhahn, L., Bönn, M., Tarkka, M.T., Buscot, F., Herrmann, S., Menzel, R., Ruess, L. (2016):
  Transcriptome analysis in oak uncovers a strong impact of endogenous rhythmic growth on the interaction with plant-parasitic nematodes
  BMC Genomics 17 , art. 627 10.1186/s12864-016-2992-8
• Caravaca, F., Maboreke, H., Kurth, F., Herrmann, S., Tarkka, M.T., Ruess, L. (2015):
  Synergists and antagonists in the rhizosphere modulate microbial communities and growth of Quercus robur L.
  Soil Biol. Biochem. 82 , 65 - 73 10.1016/j.soilbio.2014.12.004
• Herrmann, S., Recht, S., Boenn, M., Feldhahn, L., Angay, O., Fleischmann, F., Tarkka, M.T., Grams, T.E.E., Buscot, F. (2015):
  Endogenous rhythmic growth in oak trees is regulated by internal clocks rather than resource availability
  J. Exp. Bot. 66 (22), 7113 - 7127 10.1093/jxb/erv408
• Kohler, A., Kuo, A., Nagy, L.G., Morin, E., Barry, K.W., Buscot, F., Canbäck, B., Choi, C., Cichocki, N., Clum, A., Colpaert, J., Copeland, A., Costa, M.D., Doré, J., Floudas, D., Gay, D., Girlanda, M., Henrissat, B., Herrmann, S., Hess, J., Högberg, N., Johansson, T., Khouja, H.-R., La Butti, K., Lahrmann, U., Levasseur, A., Lindquist, E.A., Lipzen, A., Marmeisse, R., Martino, E., Murat, C., Chew, Y., Ngan, C.Y., Nehls, U., Plett, J.M., Pringle, A., Ohm, R.A., Perotto, S.P., Riley, R., Rineau, F., Ruytinx, J., Salamov, A., Shah, F., Sun, H., Tarkka, M., Tritt, A., Veneault-Fourrey, C., Zuccaro, A., Tunlid, A., Grigoriev, I.V., Hibbett, D.S., Martin, F. (2015):
  Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists
  Nature Genet. 47 , 410 - 415 10.1038/ng.3223
• Kurth, F., Feldhahn, L., Bönn, M., Herrmann, S., Buscot, F., Tarkka, M.T. (2015):
  Large scale transcriptome analysis reveals interplay between development of forest trees and a beneficial mycorrhiza helper bacterium
  BMC Genomics 16 , art. 658 10.1186/s12864-015-1856-y
• Lesur, I., Le Provost, G., Bento, P., Da Silva, C., Leplé, J.-C., Murat, F., Ueno, S., Bartholomé, J., Lalanne, C., Ehrenmann, F., Noirot, C., Burban, C., Léger, V., Amselem, J., Belser, C., Quesneville, H., Stierschneider, M., Fluch, S., Feldhahn, L., Tarkka, M., Herrmann, S., Buscot, F., Klopp, C., Kremer, A., Salse, J., Aury, J.-M., Plomion, C. (2015):
  The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release
  BMC Genomics 16 , art. 112 10.1186/s12864-015-1331-9
• Goris, T., Schubert, T., Gadkari, J., Wubet, T., Tarkka, M., Buscot, F., Adrian, L., Diekert, G. (2014):
  Insights into organohalide respiration and the versatile catabolism of Sulfurospirillum multivorans gained from comparative genomics and physiological studies
  Environ. Microbiol. 16 (11), 3562 - 3580 10.1111/1462-2920.12589
• Kurth, F., Mailänder, S., Bönn, M., Feldhahn, L., Herrmann, S., Große, I., Buscot, F., Schrey, S.D., Tarkka, M.T. (2014):
  Streptomyces-induced resistance against oak powdery mildew involves host plant responses in defense, photosynthesis, and secondary metabolism pathways
  Mol. Plant-Microbe Interact. 27 (9), 891 - 900 10.1094/MPMI-10-13-0296-R
• Kurth, F., Zeitler, K., Feldhahn, L., Neu, T.R., Weber, T., Krištůfek, V., Wubet, T., Herrmann, S., Buscot, F., Tarkka, M.T. (2013):
  Detection and quantification of a mycorrhization helper bacterium and a mycorrhizal fungus in plant-soil microcosms at different levels of complexity
  BMC Microbiol. 13 , art. 205 10.1186/1471-2180-13-205
• Pavic, A., Stanković, S., Saljnikov, E., Krüger, D., Buscot, F., Tarkka, M., Marjanović, Z. (2013):
  Actinobacteria may influence white truffle (Tuber magnatum Pico) nutrition, ascocarp degradation and interactions with other soil fungi
  Fungal Ecol. 6 (6), 527 - 538 10.1016/j.funeco.2013.05.006
• Pöritz, M., Goris, T., Wubet, T., Tarkka, M.T., Buscot, F., Nijenhuis, I., Lechner, U., Adrian, L. (2013):
  Genome sequences of two dehalogenation specialists - Dehalococcoides mccartyi strains BTF08 and DCMB5 enriched from the highly polluted Bitterfeld region
  FEMS Microbiol. Lett. 343 (2), 101 - 104 10.1111/1574-6968.12160
• Tarkka, M.T., Herrmann, S., Wubet, T., Feldhahn, L., Recht, S., Kurth, F., Mailänder, S., Bönn, M., Neef, M., Angay, O., Bacht, M., Graf, M., Maboreke, H., Fleischmann, F., Grams, T.E.E., Ruess, L., Schädler, M., Brandl, R., Scheu, S., Schrey, S.D., Grosse, I., Buscot, F. (2013):
  OakContigDF159.1, a reference library for studying differential gene expression in Quercus robur during controlled biotic interactions: use for quantitative transcriptomic profiling of oak roots in ectomycorrhizal symbiosis
  New Phytol. 199 (2), 529 - 540 10.1111/nph.12317
• Schrey, S.D., Erkenbrack, E., Früh, E., Fengler, S., Hommel, K., Horlacher, N., Schulz, D., Ecke, M., Kulik, A., Fiedler, H.P., Hampp, R., Tarkka, M.T. (2012):
  Production of fungal and bacterial growth modulating secondary metabolites is widespread among mycorrhiza-associated streptomycetes
  BMC Microbiol. 12 , art. 164 10.1186/1471-2180-12-164
• Taubert, M., Vogt, C., Wubet, T., Kleinsteuber, S., Tarkka, M.T., Harms, H., Buscot, F., Richnow, H.-H., von Bergen, M., Seifert, J. (2012):
  Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium
  ISME J. 6 (12), 2291 - 2301 10.1038/ismej.2012.68
• Yurkov, A., Krüger, D., Begerow, D., Arnold, N., Tarkka, M.T. (2012):
  Basidiomycetous yeasts from Boletales fruiting bodies and their interactions with the mycoparasite Sepedonium chrysospermum and the host fungus Paxillus
  Microb. Ecol. 63 (2), 295 - 303 10.1007/s00248-011-9923-7
• Frey-Klett, P., Burlinson, P., Deveau, A., Barret, M., Tarkka, M., Sarniguet, A. (2011):
  Bacterial-fungal interactions: hyphens between agricultural, clinical, environmental, and food microbiologists
  Microbiol. Mol. Biol. Rev. 75 (4), 583 - 609 10.1128/MMBR.00020-11
• Lehr, N.A., Adomas, A., Asiegbu, F.O., Hamp, R., Tarkka, M.T. (2009):
  WS-5995 B, an antifungal agent inducing differential gene expression in the conifer pathogen Heterobasidion annosum but not in Heterobasidion abietinum
  Appl. Microbiol. Biotechnol. 85 (2), 347 - 358 10.1007/s00253-009-2254-7
• Tarkka, M.T., Sarniguet, A., Frey-Klett, P. (2009):
  Inter-kingdom encounters: recent advances in molecular bacterium-fungus interactions
  Curr. Genet. 55 (3), 233 - 243 10.1007/s00294-009-0241-2
• Lehr, N.A., Schrey, S.D., Hampp, R., Tarkka, M.T. (2008):
  Root inoculation with a forest soil streptomycete leads to locally and systemically increased resistance against phytopathogens in Norway spruce
  New Phytol. 177 (4), 965 - 976 10.1111/j.1469-8137.2007.02322.x
• Schrey, S.D., Tarkka, M.T. (2008):
  Friends and foes: streptomycetes as modulators of plant disease and symbiosis
  Antonie Van Leeuwenhoek 94 (1), 11 - 19 10.1007/s10482-008-9241-3
• Frey-Klett, P., Garbaye, J., Tarkka, M. (2007):
  The mycorrhiza helper bacteria revisited
  New Phytol. 176 (1), 22 - 36 10.1111/j.1469-8137.2007.02191.x
• Lehr, N.A., Schrey, S.D., Bauer, R., Hampp, R., Tarkka, M.T. (2007):
  Suppression of plant defence response by a mycorrhiza helper bacterium
  New Phytol. 174 (4), 892 - 903 10.1111/j.1469-8137.2007.02021.x
• Schrey, S.D., Salo, V., Raudaskoski, M., Hampp, R., Nehls, U., Tarkka, M.T. (2007):
  Interaction with mycorrhiza helper bacterium Streptomyces sp. AcH 505 modifies organisation of actin cytoskeleton in the ectomycorrhizal fungus Amanita muscaria (fly agaric)
  Curr. Genet. 52 (2), 77 - 85 10.1007/s00294-007-0138-x
• Tarkka, M.T., Piechulla, B. (2007):
  Aromatic weapons: truffles attack plants by the production of volatiles
  New Phytol. 175 (3), 381 - 383 10.1111/j.1469-8137.2007.02165.x
• Riedlinger, J., Schrey, S.D., Tarkka, M.T., Hampp, R., Kapur, M., Fiedler, H.P. (2006):
  Auxofuran, a novel metabolite that stimulates the growth of fly agaric, is produced by the mycorrhiza helper bacterium Streptomyces strain AcH 505
  Appl. Environ. Microb. 72 (5), 3550 - 3557 10.1128/AEM.72.5.3550-3557.2006
• Tarkka, M.T., Schrey, S., Nehls, U. (2006):
  The α-tubulin gene AmTuba1: a marker for rapid mycelial growth in the ectomycorrhizal basidiomycete Amanita muscaria
  Curr. Genet. 49 (5), 294 - 301 10.1007/s00294-006-0056-3
• Juuti, J.T., Jokela, S., Tarkka, M.T., Paulin, L., Lahdensalo, J. (2005):
  Two phylogenetically highly distinct β-tubulin genes of the basidiomycete Suillus bovinus
  Curr. Genet. 47 (4), 253 - 263 10.1007/s00294-005-0564-6
• Schrey, S.D., Schellhammer, M., Ecke, M., Hampp, R., Tarkka, M.T. (2005):
  Mycorrhiza helper bacterium Streptomyces AcH 505 induces differential gene expression in the ectomycorrhizal fungus Amanita muscaria
  New Phytol. 168 (1), 205 - 216 10.1111/j.1469-8137.2005.01518.x
• Saarma, K., Tarkka, M.T., Itavaara, M., Fagerstedt, K.V. (2003):
  Heat shock protein synthesis is induced by diethyl phthalate but not by di(2-ethylhexyl) phthalate in radish (Raphanus sativus)
  J. Plant Physiol. 160 (9), 1001 - 1010 10.1078/0176-1617-00525

Articles in other journals (not listed in ISI) (6)

• Rigerte, L., Heintz-Buschart, A., Reitz, T., Tarkka, M.T. (2025):
  Assembly and application of a synthetic bacterial community for enhancing barley tolerance to drought
  Frontiers in Bacteriology 4 , art. 1572294 10.3389/fbrio.2025.1572294
• Ferlian, O., Goldmann, K., Eisenhauer, N., Tarkka, M.T., Buscot, F., Heintz-Buschart, A. (2021):
  Distinct effects of host and neighbour tree identity on arbuscular and ectomycorrhizal fungi along a tree diversity gradient
  ISME Commun. 1 , art. 40 10.1038/s43705-021-00042-y
• Vetterlein, D., Carminati, A., Kögel-Knabner, I., Bienert, G.P., Smalla, K., Oburger, E., Schnepf, A., Banitz, T., Tarkka, M., Schlüter, S. (2020):
  Rhizosphere spatiotemporal organization–A key to rhizosphere functions
  Front. Agron. 2 , art. 8 10.3389/fagro.2020.00008
• Tarkka, M.T., Feldhahn, L., Buscot, F., Wubet, T. (2015):
  Genome sequence of the mycorrhiza helper bacterium Streptomyces sp. strain AcH 505
  Genome Announc. 3 (2), e01386-14 10.1128/genomeA.01386-14
• Tarkka, M.T., Feldhahn, L., Krüger, D., Arnold, N., Buscot, F., Wubet, T. (2015):
  Draft genome sequence of Streptomyces sp. Strain 150FB, a mushroom mycoparasite antagonist
  Genome Announc. 3 (2), e01441-14 10.1128/genomeA.01441-14
• Tarkka, M.T., Lehr, N.A., Hampp, R., Schrey, S.D. (2008):
  Plant behavior upon contact with streptomycetes
  Plant Signaling & Behavior 3 (11), 1 - 3

Book chapters (4)

• Hampp, R., Tarkka, M.T. (2009):
  Interaction with soil microorganisms
  In: Varma, A., Kharkwal, A.C. (eds.)
  Symbiotic fungi. Principles and practice
  Soil Biology 18
  Springer, Berlin, Heidelberg, p. 197 - 210 10.1007/978-3-540-95894-9_12
• Tarkka, M., Hampp, R. (2008):
  Secondary metabolites of soil streptomycetes in biotic interactions
  In: Karlovsky, P. (ed.)
  Secondary metabolites in soil ecology
  Soil Biology 14
  Springer, Berlin, Heidelberg, p. 107 - 126 10.1007/978-3-540-74543-3_6
• Tarkka, M., Schrey, S.D., Hampp, R. (2008):
  Plant associated soil micro-organisms
  In: Nautiyal, C.S., Dion, P. (eds.)
  Molecular mechanisms of plant and microbe coexistence
  Soil Biology 15
  Springer, Berlin, Heidelberg, p. 3 - 51 10.1007/978-3-540-75575-3_1
• Tarkka, M.T., Frey-Klett, P. (2008):
  Mycorrhiza helper bacteria
  In: Varma, A. (ed.)
  Mycorrhiza. State of the art, genetics and molecular biology, eco-function, biotechnology, eco-physiology, structure and systematics
  Springer, Berlin, Heidelberg, p. 113 - 132 10.1007/978-3-540-78826-3_6

Reports (1)

• Tarkka, M., Hildebrandt, J. (2020):
  Pilzarten und ihre pflanzlichen Wirte im Klimawandel
  ESKP Earth System Knowledge Platform Wissensplattform Erde und Umwelt, Potsdam, 9 S. 10.2312/eskp.006

Conference papers (1)

• Ganther, M., Bouffaud, M.-L., Gebauer, L., Buscot, F., Vetterlein, D., Heintz-Buschart, A., Tarkka, M. (2020):
  Spatial sampling approach to unravel the impact of soil texture and root genotype on maize root gene expression profiles
  EGU General Assembly, EGU2020, Online, 4-8 May 2020
  EGUsphere
  Copernicus Publications, EGU2020-9707 10.5194/egusphere-egu2020-9707

Data Publication (1)

• Fernandez, I., Bouffaud, M.-L., Martinez-Medina, A., Schädler, M., Tarkka, M., Weinhold, A., van Dam, N., Herrmann, S., Buscot, F. (2022):
  Endogenous rhythmic growth modulates priming of antiherbivore defenses in subsequently formed new leaves of oak trees [Data set]
  Zenodo 10.5281/zenodo.7040241