2018

• Breitenbach, R.; Silbernagl, D.; Toepel, J.; Sturm, H.; Broughton, W.J.; Sassaki, G.L.; Gorbushina, A.A.; (2018)
  Corrosive extracellular polysaccharides of the rock-inhabiting model fungus Knufia petricola. Extremophiles: life under extreme conditions 22 (2):165-175.
  doi:10.1007/s00792-017-0984-5

• Martin-Sanchez, P.M.; Becker, R.; Gorbushina, A.A.; Toepel, J. (2018)
  An improved test for the evaluation of hydrocarbon degradation capacities of diesel-contaminating microorganisms.
  International Biodeterioration & Biodegradation 129:89-94.
  doi: https://doi.org/10.1016/j.ibiod.2018.01.009

• Martin-Sanchez, P.M.; Gebhardt, C.; Toepel, J.; Barry, J.; Munzke, N.; Günster, J.; Gorbushina, A.A.; (2018)
  Monitoring microbial soiling in photovoltaic systems: A qPCR-based approach.
  International Biodeterioration & Biodegradation 129:13-22.
  doi:https://doi.org/10.1016/j.ibiod.2017.12.008
  
  

2017

• Epperlein, N; Menzel, F.; Schwibbert, K.; Koter, J; Bonse J.; Sameith, J.;Krüger, J. & Toepel, J. (2017)
  Influence of femtosecond laser produced nanostructures on biofilm growth on steel
  Applied Surface Science 418(B):420-424
  
  

2016

• Breitenbach, R.; Toepel, J.; Dementyeva, P.; Knabe, N. & Gorbushina, A. (2016)
  Snapshots of fungal extracellular matrix (Chapter) The Perfect Slime; microbial extracellular polymeric substances
  Publisher: IWA; Eds.: Flemming, W.
  

• Martin-Sanchez, P.M.; Gorbushina, A.A.; Kunte, H.J. & Toepel, J. (2016)
  A novel qPCR protocol for the specific detection and quantification of the fuel-deteriorating fungus Hormoconis resinae.
  Biofouling 32(6):635-44
  

• Martin-Sanchez, P.M.; Gorbushina, A.A. & Toepel, J. (2016)
  Quantification and identification of microbial pollutants from diesel storage tanks in petrol stations.
  International Biodeterioration & Biodegradation (DOI: 10.1016/j.ibiod.2016.04.009)
  

2013

• Toepel, J., Doebbe, A., Ilmer Kephaides, M. & Kruse, O. (2013)
  Transcriptomic analysis of hydrogen production in wildtype Chlamydomonas  strains, new insights with RNA seq.
  Plant Biotechnol. Journal 1(6):717-33.

2011

• Nguyen, A.V., Toepel, J., Burgess, S., Blifernez, O., Doebbe, A., Hankamer, B., Nixon, P., Wobbe, L. & Kruse, O. (2011)
  Time-course Global Expression Profiles of Chlamydomonas reinhardtii during Photo-Biological Hydrogen Production
  PloS one. 6(12)
  

• Toepel, J., Albaum, S.A., Arvidsson, S., Goesmann, A., la Russa, M., Rogge, K. & Kruse, O. (2011) Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii.
  BMC genomics. 12:579

2010

• Toepel, J., McDermott, J.M., Summerfield T.C. & Sherman L.A. (2010)
  Transcriptional analysis of the unicellular, diazotrophic cyanobacterium Cyanothece sp. ATCC 51142 grown under short day/night cycles
  Journal of Phycology. 45:610-620.

2008

• Summerfield, T. C., Toepel, J. & Sherman, L.A. (2008)
  Low-oxygen induction of normally cryptic psbA genes in cyanobacteria.
  Biochemistry; 47(49):12939-41.
  
  

• Toepel, J., Summerfield, T., Welsh, E. & Sherman, L. (2008)
  Differential transcriptional analysis of the cyanobacterium Cyanothece sp. ATCC 51142 during continuous-light growth.
  J. Bacteriology 190(11) 3904-3913.

2005

• Toepel, J., Langner, U. & Wilhelm, C. (2005)
  The combination of flow cytometry and single cell absorption spectroscopy to study the phytoplankton structure and to calculate the Chl a specific absorption coefficients at the taxon level;
  Journal of Phycology 41:1099-1109.
  

• Stehfest, K., Toepel, J. & Wilhelm, C. (2005)
  The application of Microscopy FTIR spectroscopy to analyze nutrient-stress related changes in biomass composition of phytoplankton algae;
  Plant Physiology and Biochemistry 43:717-726.
  
  

2004

• Toepel, J., Wilhelm, C., Meister, A., Becker, A. & Martinez-Ballesta, M. (2004)
  Cytometry of freshwater phytoplankton.;
  Cytometry: New Developments 75:375-407.
  

• Toepel, J., Gilbert, M. & Wilhelm, C. (2004)
  Can chlorophyll a in-vivo fluorescence be used for quantification of carbon based primary production in absolute terms?
  Archiv für Hydrobiolgie 160:515-526.