Felipe Borim Corrêa
Contact
PhD Student
Working Group Microbial Data Science
Department of Environmental Microbiology
Helmholtz Centre for Environmental Research - UFZ
Permoserstr. 15, D-04318 Leipzig, Germany
Phone +49 341 235-1374
felipe.correa@ufz.de
.jpg "Felipe")
CV / Scientific Career
09/2017 present
PhD Student in Bioinformatics - Microbial Data Science group, Department of Environmental Microbiology, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany
08/2015 07/2017
Master of Science in Bioinformatics - Federal University of Minas Gerais - UFMG, Belo Horizonte, Brazil
02/2010 11/2013
Bachelor of Science in Biology - State University of the North of Paraná - UENP, Bandeirantes, Brazil
Research interests
I am interested in laying the groundwork for predictions in complex microbial communities, especially for understanding how microorganisms are involved on the bioremediation of contaminated terrestrial environments. In order to achieve that, my current research is based on the exploration of microbial “Big Data” (metagenomic datasets) from public repositories. That involves the development of novel bioinformatics pipelines, standardization of metadata from biological databases, multi-omics data integration and meta-analysis. Recently I have developed a metadada database for terrestrial metagenomes (TerrestrialMetagenomeDB). Currently I am developing techniques to explore the microbial diversity by using genome-resolved metagenomics, for instance applying microbial ecology on metagenome-assembled genomes beyond species level.
Publications
2023 (3)
- Abdulkadir, N., Saraiva, J.P., Schattenberg, F., Brizola Toscan, R., Borim Correa, F., Harms, H., Müller, S., Nunes da Rocha, U. (2023):
Combining flow cytometry and metagenomics improves recovery of metagenome-assembled genomes in a cell culture from activated sludge
Microorganisms 11 (1), art. 175
full text (doi) - Buivydaitė, Ž., Aryal, L., Borim Corrêa, F., Chen, T., Langlois, V., Elberg, C.L., Netherway, T., Wang, R., Zhao, T., Acharya, B., Emerson, J.B., Hillary, L., Khadka, R.B., Mason-Jones, K., Sapkota, R., Sutela, S., Trubl, G., White III, R.A., Winding, A., Carreira, C. (2023):
Meeting report: The first soil viral workshop 2022
Virus Res. 331 , art. 199121
full text (doi) - Chafra, F., Borim Correa, F., Oni, F., Konu Karakayalı, Ö., Stadler, P.F., Nunes da Rocha, U. (2023):
StandEnA: a customizable workflow for standardized annotation and generating a presence–absence matrix of proteins
Bioinform. Adv. 3 (1), vbad069
full text (doi)
2022 (3)
- Eziuzor, S.C., Borim Corrêa, F., Peng, S., Schultz, J., Kleinsteuber, S., Nunes da Rocha, U., Adrian, L., Vogt, C. (2022):
Structure and functional capacity of a benzene‐mineralizing, nitrate‐reducing microbial community
J. Appl. Microbiol. 132 (4), 2795 - 2811
full text (doi) - Korth, B., Pous, N., Hönig, R., Haus, P., Borim Corrêa, F., Nunes da Rocha, U., Puig, S., Harnisch, F. (2022):
Electrochemical and microbial dissection of electrified biotrickling filters
Front. Microbiol. 13 , art. 869474
full text (doi) - Nunes da Rocha, U., Kasmanas, J.C., Kallies, R., Saraiva, J.P., Brizola Toscan, R., Štefanič, P., Fleming Bicalho, M., Borim Correa, F., Baştürk, M.N., Fousekis, E., Viana Barbosa, L.M., Plewka, J., Probst, A.J., Baldrian, P., Stadler, P.F., CLUE-TERRA consortium, (2022):
MuDoGeR: Multi-Domain Genome Recovery from metagenomes made easy
bioRxiv 10.1101/2022.06.21.496983
2021 (1)
- Kasmanas, J.C., Bartholomäus, A., Borim Corrêa, F., Tal, T., Jehmlich, N., Herberth, G., von Bergen, M., Stadler, P.F., de Carvalho, A.C.P.L.F., Nunes da Rocha, U. (2021):
HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes
Nucleic Acids Res. 49 (D1), D743 - D750
full text (doi)
2020 (4)
- Borim Corrêa, F., Eziuzor, S., Peng, S., Schultz, J., Saraiva, J.P., Adrian, L., Stadler, P., Kleinsteuber, S., Vogt, C., Nunes da Rocha, U. (2020):
Genome-resolved metagenomics sheds light on the anaerobic conversion of aromatics by complex communities
3rd Doctoral Colloquium Bioenergy 17/18 September, 2020
DBFZ Deutsches Biomasseforschungszentrum gemeinnützige GmbH, Leipzig, p. 62 - 63
full text (url) - Borim Corrêa, F., Saraiva, J.P., Stadler, P.F., Nunes da Rocha, U. (2020):
TerrestrialMetagenomeDB: a public repository of curated and standardized metadata for terrestrial metagenomes
Nucleic Acids Res. 48 (D1), D626 - D632
full text (doi) - Feng, L., Lemes Perschke, Y.M., Fontaine, D., Nikolausz, M., Ward, A.J., Nunes da Rocha, U., Borim Corrêa, F., Eriksen, J., Sørensen, P., Møller, H.B. (2020):
Anaerobic digestion of co-ensiled cover crop and barley straw: Effect of co-ensiling ratios, manure addition and impact on microbial community structure
Ind. Crop. Prod. 144 , art. 112025
full text (doi) - Lian, S., Nikolausz, M., Nijenhuis, I., Nunes da Rocha, U., Liu, B., Borim Corrêa, F., Saraiva, J.P., Richnow, H.H. (2020):
Biotransformation of hexachlorocyclohexanes contaminated biomass for energetic utilization demonstrated in continuous anaerobic digestion system
J. Hazard. Mater. 384 , art. 121448
full text (doi)