Publikationen

Publikationen entstanden an der Uni Leipzig

Professur für Bioinformatik
Institut für Informatik
Universität Leipzig
Härtelstr. 16-18
D-04107 Leipzig

2018

• Canzler S., Stadler P. F., and Hertel J. The fungal snoRNAome.
  RNA, 24(3):342-360, Mar 2018
  

2017

• Canzler S., Stadler P. F., and Hertel J. Evolution of Fungal U3 snoRNAs:
  Structural Variation and Introns. Non-Coding RNA, 3(1), Jan 2017.

2016

• Patra Bhattacharya D., Canzler S., Kehr S., Hertel J., Grosse I., and Stadler
  P. F. Phylogenetic distribution of plant snorna families.
  BMC Genomics, 17(1):969, Nov 2016.
• Canzler S., Stadler P. F., and Hertel J. U6 snRNA Intron Insertion Occurred
  Multiple Times during Fungi Evolution.
  RNA Biol, 13(2):119–27, Feb 2016.

2014

• Schneider H., Bartschat S., Doose G., Maciel L., Pizani E., Bassani M., Torres
  F. A., Will S., Raiol T., Brígido M., Walter M. E., and Stadler P. F. Genome-
  Wide Identification of Non-coding RNAs in Komagatella pastoris str. GS115.
  In Campos S., editor, Advances in Bioinformatics and Computational Biology,
  volume 8826 of Lecture Notes in Computer Science,
  pages 115–122. Springer International Publishing, 2014.
• Kehr S., Bartschat S., Tafer H., Stadler P. F., and Hertel J. Matching of
  Soulmates: coevolution of snoRNAs and their targets. Mol Biol Evol,
  31(2):455–67, Feb 2014.
• Bartschat S., Kehr S., Tafer H., Stadler P. F., and Hertel J. snoStrip: a
  snoRNA annotation pipeline. Bioinformatics, 30(1):115–6, Jan 2014.
• Anthon C., Tafer H., Havgaard J. H., Thomsen B., Hedegaard J., Seemann
  S. E., Pundhir S., Kehr S., Bartschat S., Nielsen M., Nielsen R. O., Fredholm
  M., Stadler P. F., and Gorodkin J. Structured RNAs and synteny regions in
  the pig genome. BMC Genomics, 15:459, 2014.

2013

• Huang Y., Li Y., Burt D. W., Chen H., Zhang Y., Qian W., Kim H., Gan S.,
  Zhao Y., Li J., Yi K., Feng H., Zhu P., Li B., Liu Q., Fairley S., Magor K. E.,
  Du Z., Hu X., Goodman L., Tafer H., Vignal A., Lee T., Kim K. W., Sheng
  Z., An Y., Searle S., Herrero J., Groenen M. A., Crooijmans R. P., Faraut
  T., Cai Q., Webster R. G., Aldridge J. R., Warren W. C., Bartschat S., Kehr
  S., Marz M., Stadler P. F., Smith J., Kraus R. H., Zhao Y., Ren L., Fei J.,
  Morisson M., Kaiser P., Griffin D. K., Rao M., Pitel F., Wang J., and Li N.
  The duck genome and transcriptome provide insight into an avian influenza
  virus reservoir species. Nat Genet, 45(7):776–83, Jul 2013.

2012

• Hertel J., Bartschat S., Wintsche A., Otto C., Students of the Bioinformatics
  Computer Lab, and Stadler P. F. Evolution of the let-7 microRNA family.
  RNA Biol, 9(3):231–41, Mar 2012.

2011

• Marz M., Gruber A. R., Höner Zu Siederdissen C., Amman F., Badelt S.,
  Bartschat S., Bernhart S. H., Beyer W., Kehr S., Lorenz R., Tanzer A., Yusuf
  D., Tafer H., Hofacker I. L., and Stadler P. F. Animal snoRNAs and scaRNAs
  with exceptional structures. RNA Biol, 8(6):938–46, 2011.
• Langenberger D., Bartschat S., Hertel J., Hoffmann S., Tafer H., and Stadler
  P. F. MicroRNA or Not MicroRNA? In Norberto de Souza O., Telles G. P., and
  Palakal M., editors, Advances in Bioinformatics and Computational Biology,
  volume 6832 of Lecture Notes in Computer Science, pages 1–9. Springer Berlin
  Heidelberg, 2011.
• Kehr S., Bartschat S., Stadler P. F., and Tafer H. PLEXY: efficient target
  prediction for box C/D snoRNAs. Bioinformatics, 27(2):279–80, Jan 2011.

2010

• Bartschat S. and Samuelsson T. U12 type introns were lost at multiple occasions
  during evolution. BMC Genomics, 11:106, 2010.