2022 (3)

• Fahrner, M., Föll, M.C., Grüning, B.A., Bernt, M., Röst, H., Schilling, O. (2022):
  Democratizing data-independent acquisition proteomics analysis on public cloud infrastructures via the Galaxy framework
  GigaScience 11 , giac005
  Volltext (DOI)
• Ostrovsky, A.E., Mahmoud, A., Lonie, A., Syme, A., Fouilloux, A., Bretaudeau, A., Nekrutenko, A., Kumar, A., Eschenlauer, A.C., DeSanto, A.D., Guerler, A., Serrano-Solano, B., Batut, B., Grüning, B.A., Langhorst, B.W., Carr, B., Blankenberg, D., Goecks, J., Bernt, M., Schatz, M.C., The Galaxy Community (2022):
  The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
  Nucleic Acids Res. 50 (W1), W345 - W351
  Volltext (DOI)
• Schor, J., Scheibe, P., Bernt, M., Busch, W., Lai, C., Hackermüller, J. (2022):
  AI for predicting chemical-effect associations at the chemical universe level — deepFPlearn
  Brief. Bioinform. 23 (5), bbac257
  Volltext (DOI)

2019 (3)

• Donath, A., Jühling, F., Al-Arab, M., Bernhart, S.H., Reinhardt, F., Stadler, P.F., Middendorf, M., Bernt, M. (2019):
  Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes
  Nucleic Acids Res. 47 (20), 10543 - 10552
  Volltext (DOI)
• Hartmann, T., Bernt, M., Middendorf, M. (2019):
  An exact algorithm for sorting by weighted preserving genome rearrangements
  IEEE-ACM Trans. Comput. Biol. Bioinform. 16 (1), 52 - 62
  Volltext (DOI)
• Li, Y., Kocot, K.M., Tassia, M.G., Cannon, J.T., Bernt, M., Halanych, K.M. (2019):
  Mitogenomics reveals a novel genetic code in Hemichordata
  Genome Biol. Evol. 11 (1), 29 - 40
  Volltext (DOI)

2018 (1)

• Hartmann, T., Bernt, M., Middendorf, M. (2018):
  EqualTDRL: illustrating equivalent tandem duplication random loss rearrangements
  BMC Bioinformatics 19 , art. 192
  Volltext (DOI)

2017 (1)

• Al Arab, M., Bernt, M., Höner zu Siederdissen, C., Tout, K., Stadler, P.F. (2017):
  Partially local three-way alignments and the sequence signatures of mitochondrial genome rearrangements
  Algorithms Mol. Biol. 12 , art. 22
  Volltext (DOI)