Mika Tarkka - Complete list of publications:

Peer-reviewed publications

Caravaca, F., Maboreke, H., Kurth, F., Herrmann, S., Tarkka, M.T., Ruess, L. (2015) Synergists and antagonists in the rhizosphere modulate microbial communities and growth of Quercus robur L.
Soil Biology and Biochemistry 82, 65-73 DOI:10.1016/j.soilbio.2014.12.004

Kohler, A., Kuo, A., Nagy, L.G., Morin, E., Barry, K.W., Buscot, F., Canbäck, B., Choi, C., Cichocki, N., Clum, A., Colpaert, J., Copeland, A., Costa, M.D., Doré, J., Floudas, D., Gay, G., Girlanda, M., Henrissat, B., Herrmann, S., Hess, J., Högberg, N., Johansson, T., Khouja, H.-R., La Butt, I.K., Lahrmann, U., Levasseur, A., Lindquist, E.A., Lipzen, A., Marmeisse, R., Martino, E., Murat, C, Chew, Y., Ngan, C.Y., Nehls, U., Plett, J.M., Pringle, A., Ohm, R.A., Perotto, S.P., Riley, R., Rineau, F., Ruytinx, J., Salamov, A., Shah, F., Sun, H., Tarkka, M., Tritt, A., Veneault-Fourrey, C., Zuccaro, A., Mycorrhizal Genomics Initiative Consortium, Tunlid, A., Grigoriev, I.V., Hibbett D.S., Martin, F. (2015) Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists.
Nature Genetics, in press DOI:10.1038/ng.3223

Lesur, I., Le Provost, G., Bento, P., Da Silva, C., Leplé, J-C., Murat, F., Ueno, S., Bartholomé, J., Lalanne, C., Ehrenmann, F., Noirot C., Burban, C., Léger, V., Amselem, J., Belser, C., Quesneville, H., Stierschneider, M., Fluch, S., Feldhahn, L., Tarkka, M., Herrmann, S., Buscot, F., Klopp, C., Kremer, A., Salse, J., Aury, J.-M., Plomion, C. (2015) The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release
BMC Genomics 16, 112. DOI:10.1186/s12864-015-1331-9

Tarkka, M.T., Feldhahn, L., Buscot, F., Wubet, T. (2015) Genome sequence of the Mycorrhiza Helper Bacterium Streptomyces sp. strain AcH 505.
Genome Announcements 3, e01386-14 DOI:10.1128/genomeA.01386-14

Tarkka, M.T., Feldhahn, L., Krüger, D., Arnold, N., Buscot, F., Wubet, T. (2015) Draft genome sequence of Streptomyces sp. strain 150FB, a mushroom mycoparasite antagonist.
Genome Announcements 3, e01441-14 DOI:10.1128/genomeA.01441-14

Goris, T., Schubert, T., Gadkari, J., Wubet, T., Tarkka, M., Buscot, F., Adrian, L., Diekert, G. (2014)
Insights into organohalide respiration and the versatile catabolism of Sulfurospirillum multivorans gained from comparative genomics and physiological studies
Environmental Microbiology 16, 3562-3580. DOI:10.1111/1462-2920.12589

Kurth, F., Mailänder, S., Bönn, M., Feldhahn, L., Herrmann, S., Große, I., Buscot, F., Schrey, S.D., Tarkka, M.T. (2014)
Streptomyces-induced resistance against oak powdery mildew involves host plant responses in defence, photosynthesis and secondary metabolism pathways
Molecular Plant-Microbe Interactions 27, 891-900. DOI:10.1094/MPMI-10-13-0296-R

Goris, T., Schubert, T., Gadkari, J., Wubet, T., Tarkka, M., Buscot, F., Adrian, L., Diekert, G. (2014)
Insights into organohalide respiration and the versatile catabolism of Sulfurospirillum multivorans gained from comparative genomics and physiological studies
Environmental Microbiology DOI:10.1111/1462-2920.12589

Kurth, F., Zeitler, K., Feldhahn, L., Neu, T.R., Weber, T., Krištůfek, V., Wubet, T., Herrmann, S., Buscot, F., Tarkka, M.T. (2013)
Detection and quantification of a mycorrhization helper bacterium and a mycorrhizal fungus in plant-soil microcosms at different levels of complexity
BMC Microbiology 13, 205. DOI:10.1186/1471-2180-13-205

Pavic, A., Stankovic, S., Saljnikov, E., Krüger, D., Buscot, F., Tarkka, M.T., Marjanovic, Z. (2013)
Actinobacteria may influence white truffle (Tuber magnatum Pico) nutrition, ascocarp degradation and interactions with other soil fungi.
Fungal Ecology, in press. http://dx.doi.org/10.1016/j.funeco.2013.05.006

Tarkka, M.T., Herrmann, S., Wubet, T., Feldhahn, L., Recht, S., Kurth, F., Mailänder, S., Bönn, M., Neef, M., Angay, O., Bacht, M., Graf, M., Maboreke, H., Fleischmann, F., Grams, T.E.E., Ruess, L., Schädler, M., Brandl, R., Scheu, S., Schrey, S.D., Grosse, I., Buscot, F. (2013)
OakContigDF159.1, a reference library for studying differential gene expression in Quercus robur during controlled biotic interactions: use for quantitative transcriptomic profiling of oak roots in ectomycorrhizal symbiosis.
New Phytologist 199, 529–540. DOI: 10.1111/nph.12317

Pöritz, M., Goris, T., Wubet, T., Tarkka, M., Buscot, F., Nijenhuis, I., Lechner, U., Adrian, L. (2013)
Genome sequences of two dehalogenation specialists - Dehalococcoides mccartyi strains BTF08 and DCMB5 enriched from the highly polluted Bitterfeld region.
FEMS Microbiology Letters 343, 101–104. DOI: 10.1111/1574-6968.12160

Taubert M., Vogt C., Wubet T., Kleinsteuber S., Tarkka M.T., Harms H., Buscot F., Richnow H.H., von Bergen M., Seifert J. (2012)
Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium
ISME Journal 6, 2291-301. DOI:10.1038/ismej.2012.68

Schrey, S.D., Erkenbrack, E., Früh, E., Fengler, S., Hommel, K., Horlacher, N., Schulz, D., Ecke, M., Kulik, A., Fiedler, H.-P., Hampp R., Tarkka, M. T. (2012)
Production of fungal and bacterial growth modulating secondary metabolites is widespread among mycorrhiza-associated streptomycetes
BMC Microbiology 12, 164. DOI:10.1186/1471-2180-12-164

Yurkov, A., Krüger, D., Begerow, D., Arnold, N., Tarkka, M.T. (2012)
Basidiomycetous yeasts from Boletales fruiting bodies and their interactions with the mycoparasite Sepedonium chrysospermum and the host fungus Paxillus
Microbial Ecology 63, 295-303. DOI:10.1007/s00248-011-9923-7

Frey-Klett, P., Burlinson, P., Deveau, A., Barret, M., Tarkka, M.T., Sarniguet, A. (2011)
Bacterial-fungal interactions: hyphens between agricultural, clinical, environmental, and food microbiologists
Microbiology Molecular Biology Reviews 75, 583-609. DOI:10.1128/MMBR.00020-11

Tarkka M.T., Sarniguet A., Frey-Klett P. (2009)
Inter-kingdom encounters: recent advances in molecular bacterium-fungus interactions.
Current Genetics 55, 233-243. DOI:10.1007/s00294-009-0241-2

Lehr N.-A., Adomas A., Asiegbu F., Hampp R., Tarkka M.T. (2009)
WS-5995 B, an antifungal agent inducing differential gene expression in the conifer pathogen Heterobasidion annosum but not in Heterobasidion abietum.
Applied Microbiology and Biotechnology 85, 347-358. DOI:10.1007/s00253-009-2254-7

Tarkka M.T., Lehr N.A., Hampp R., Schrey S.D. (2008)
Plant behaviour upon contact with streptomycetes.
Plant Signaling & Behavior 3, 1-3. [Link]

Tarkka MT, Hampp R (2008)
Root inoculation with a forest soil streptomycete leads to locally and systemically increased resistance against phytopathogens in Norway spruce.
New Phytologist 177, 965-976. download

Schrey S.D., Tarkka M.T. (2008)
Friends and foes: streptomycetes as modulators of plant disease and symbiosis.
Antonie van Leeuvenhoek 49, 11-19. DOI:10.1007/s10482-008-9241-3

Frey-Klett P., Deveau A., Tarkka M., Uroz S., Palin B., Pierrat J.-C., Martin F., Garbaye J. (2007)
Interactions between bacteria and ectomycorrhizal fungi: what’s new?
Proceedings. The 4th meeting on multitrophic interactions in soil, Dijon, France, June 2007. International Organization for Biological Control of Noxious Animals and Plants (IOBC).

Tarkka M.T., Piechulla B. (2007)
Aromatic weapons: truffles attack plants by the production of volatiles.
New Phytologist 175, 381-383. DOI:10.1111/j.1469-8137.2007.02165.x

Frey-Klett P., Garbaye J., Tarkka M.T. (2007)
The mycorrhiza helper bacteria revisited.
Review, New Phytologist 176, 22-36. DOI:10.1111/j.1469-8137.2007.02191.x

Lehr N.A., Schrey S.D., Bauer R., Hampp R., Tarkka M.T. (2007)
Suppression of plant defense response by a mycorrhiza helper bacterium.
New Phytologist 174, 892-903. DOI: download

Schrey S.D., Salo V., Raudaskoski M., Hampp R., Nehls U., Tarkka M.T. (2007)
Interaction with mycorrhiza helper bacterium Streptomyces sp. AcH 505 modifies organisation of actin cytoskeleton in the ectomycorrhizal fungus Amanita muscaria (fly agaric).
Current Genetics 52, 77-85. DOI:10.1007/s00294-007-0138-x

Riedlinger J., Schrey S.D., Tarkka M.T., Hampp R., Kapur M., Fiedler H.P. (2006)
Auxofuran, a novel substance stimulating growth of fly agaric, produced by the mycorrhiza helper bacterium Streptomyces AcH 505.
Applied and Environmental Microbiology 72, 3550-3557. download

Tarkka M.T., Schrey S., Nehls U . (2006)
The alpha-tubulin gene AmTuba1: A marker for rapid mycelial growth in the ectomycorrhizal basidiomycete Amanita muscaria.
Current Genetics 49, 294-301. download

Schrey S.D., Schellhammer M., Ecke M., Hampp R., Tarkka M.T. (2005)
Mycorrhization helper bacterium Streptomyces AcH 505 induces differential gene expression in the ectomycorrhizal fungus Amanita muscaria.
New Phytologist 168, 205-216. download

Juuti J.T., Jokela S., Tarkka M.T., Paulin L., Lahdensalo J. (2005)
Two phylogenetically highly distinct beta-tubulin genes of the basidiomycete Suillus bovinus.
Current Genetics 47, 253-263.

Saarma K., Tarkka M.T., Itavaara M., Fagerstedt K.V. (2003)
Heat shock protein synthesis is induced by diethyl phthalate but not by di(2-ethylhexyl) phthalate in radish (Raphanus sativus).
Journal of Plant Physiology 160, 1001-1010.

Gorfer M., Tarkka M.T., Hanif M., Pardo A.G., Laitiainen E., Raudaskoski M. (2001)
Characterization of small GTPases Cdc42 and Rac and the relationship between Cdc42 and actin cytoskeleton in vegetative and ectomycorrhizal hyphae of Suillus bovinus.
Molecular Plant-Microbe Interactions 14, 135-144.

Tarkka M.T., Nyman T.A., Kalkkinen N., Raudaskoski M. (2001)
Scots pine expresses short root-specific peroxidases during development.
European Journal of Biochemistry 268, 86-92.

Tarkka M.T., Vasara R., Gorfer M., Raudaskoski M. (2000)
Molecular characterization of actin genes from homobasidiomycetes: two different actin genes from Schizophyllum commune and Suillus bovinus.
Gene 251, 27-35.

Tarkka M., Niini S.S., Raudaskoski M. (1998)
Developmentally regulated proteins during differentiation of root system and ectomycorrhiza in Scots pine (Pinus sylvestris) with Suillus bovinus.
Physiologia Plantarum 104, 449-455.

Niini S.S., Tarkka M.T., Raudaskoski M. (1996)
Tubulin and actin protein patterns in Scots pine (Pinus sylvestris) roots and developing ectomycorrhiza with Suillus bovinus.
Physiologia Plantarum 96, 186-192.

Book Chapters

Hampp R., Tarkka M.T. (2009)
Interaction with soil microorganisms.
In: Varma A., Kharkwal, A.C. (eds.): Symbiotic fungi. Principles and practice. Springer Soil Biology vol. 18, pp 197-210. DOI: 10.1007/978-3-540-95894-9_12

Tarkka M.T., Frey-Klett P.(2008)
Mycorrhiza helper bacteria.
In: Varma A. (ed.): Mycorrhiza, pp 113-132, Springer-Verlag.

Tarkka M.T., Schrey S.D., Hampp R. (2008)
Plant associated soil microorganisms.
In: Molecular Mechanisms of Plant and Microbe Coexistence, Nautiyal CS, Dion P (eds), pp 3-52. Springer.

Secondary metabolites of soil streptomycetes in biotic interactions.
In: Karlovsky P. (ed.), Secondary Metabolites in Soil Ecology. Soil Biology 14: 107-128 Springer-Verlag Berlin Heidelberg.

Lehr N.A., Schrey S.D., Hampp R., Tarkka M.T. (2008)
Nehls U., Zhang C., Tarkka M., Hampp R., Fladung M. (2006)
Investigation of horizontal gene transfer from transgenic aspen to ectomycorrhizal fungi.
In: Recent developments in tree transgenesis, Fladung M, Ewald D (eds), pp 323-333. Springer-Verlag

Tarkka M.T., Nehls U., Hampp R. (2005)
Physiology of Ectomycorrhiza (ECM).
Progress in Botany 66, 220-247.

Raudaskoski M., Tarkka M.T., Niini S.S. (2004)
Mycorrhizal development and cytoskeleton.
In: Plant Surface Microbiology, pp. 293-330. Springer-Verlag.

Raudaskoski M., Pardo A., Tarkka M., et al. (2001)
Small GTPases, cytoskeleton and signal transduction in filamentous homobasidiomycetes.
NATO Science Series I: 328, 123-136