Bioavailability

Value Statement

We research the chemodynamics and microbial ecology of contaminant biotransformation for improved environmental (bio-)technology in natural and built environments.


Research Topics

Process-based description of the biotransformation and chemodynamics of organic contaminants in natural and built environments including:

  1. Ecology and bioavailability of contaminant biotransformation: Chemodynamics and microbial (bacterial/ phage) dispersal ecology for improved biotransformation and nutrient cycling .
  2. Mycosphere ecology (mycoremediation): ecology of contaminant biotransformation in the mycosphere; mycoremediation based on bacterial activation and dispersal by fungi (‘fungal highways’).
  3. Prediction of soil microbial pesticide degradation potential at the field scale: Combining proximal and remote sensing techniques with microbial activity analysis.
  4. Electrokinetics and electro-bioremediation: Use of electrokinetic approaches on the clean-up of contaminated matrices and water.

The many faces of the Bioavailability Group
The many faces of the Bioavailability Group on a sunny day in June 2023

Scientists

Dr. Marie Uksa


Technicians

Jana Reichenbach
Birgit Würz

Undergraduates

Charlotte Radtke / Universität Leipzig


  • Characterization of physico-chemical surfaces properties of bacteria and fungal mycelia (contact angle, surface charge, biosurfactant production)
  • GC-based stable isotope approaches for the assessment of substrate bioavailability to single cells and microbial communities
  • Quantification of bacterial chemotaxis, degradation kinetics and deposition rates to surfaces
  • Computer-based visualisation and quantification of bacterial motility and dispersal
  • Chemical analytical techniques and laboratory model-systems permitting for full control of experimental variables and bioavailable substrate fluxes
  • Electrokinetic and fungus-based dispersal of bacteria and chemicals in porous media

  • 2021-2027: Tapping nature’s potential for sustainable production and a healthy environment – towards a waste-minimized sustainable bioeconomy:TapNature
  • 2021-2025: Phages as vectors and indicators of biological information in the Earth‘s Critical Zone: Deutsche Forschungs Gemeinschaft - Collaborative Research Centre AquaDiva (CRC AquaDiva (AquaDiva): AquaDiva
  • 2020-2024: Electric field effects on sorption and microbial degradation of waterborne (urban) contaminants.
  • 2022-2026: Fungi as drivres of pesticide biodegradation and water retention in soil. 
  • 2024-2028: FAIRification of multiOmics data to link databases and create knowledge graphs for fermented foods (https://www.dn-fairomics.eu/fairomics-project FAIROmics); HORIZON-MSCA-2022-DN-01-01.
  • 2019-2022: Explorando el rol de los hongos en la dispersión de rizobacterias en praderas establecidos en la Patagonia Chilena (MEC80180048), partner: Universidad de la Frontera, Temuco, Chile.
  • 2022-2025: Constructing and validating mycosphere Ecosystems for efficient biodegradation of water-borne Contaminants (MycoDeg).


Index:

You could use our publication index for further requests.

2024 (5)

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2023 (6)

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2022 (12)

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2021 (7)

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2020 (3)

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2019 (5)

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2018 (13)

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2017 (15)

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2016 (10)

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2015 (10)

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2014 (7)

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2013 (9)

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2012 (14)

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2011 (7)

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2010 (14)

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