Publication Details

Category Text Publication
Reference Category Journals
DOI 10.1016/j.ympev.2026.108722
Licence creative commons licence
Title (Primary) Genome-wide SNP data support species boundaries in sympatric Polylepis Ruiz & Pav. (Rosaceae) species from Bolivia and Ecuador
Author Olivar, J.E.C.; Lehnert, M.; Durka, W. ORCID logo ; Michalski, S.; Ritz, C.M.; Ebersbach, J.; Muellner-Riehl, A.N.; Segovia-Salcedo, C.; Acosta-Villamarín, S.; Romoleroux, K.; Muriel Mera, E.P.; Trujillo, E.J.; Gareca, E.E.; Fernández, M.; Mercado, M.; Jimenez Rojas, A.; Arrazola, S.; Hensen, I.; Kessler, M.
Source Titel Molecular Phylogenetics and Evolution
Year 2026
Department BZF; iDiv
Volume 225
Page From art. 108722
Language englisch
Topic T5 Future Landscapes
Data and Software links https://doi.org/10.5281/zenodo.17945289
Supplements Supplement 1
Supplement 2
Supplement 3
Supplement 4
Supplement 5
Keywords Andes; ddRADseq; Phylogeny; Polylepis; SNP Species
Abstract Species delimitation in the South American genus Polylepis is notoriously challenging due to high morphological similarity and phenotypic plasticity, likely driven by hybridization and gene flow. Previous phylogenetic studies suggested that genetic structure aligns more strongly with geography than with taxonomy, questioning existing species concepts and hampering conservation efforts. We used double-digest RAD sequencing (ddRADseq) to generate genome-wide SNP data for 11 Polylepis species sampled across multiple localities in Bolivia and Ecuador. Population genetic analyses, phylogenetic inference, and network approaches were combined to assess whether genetic structure aligns more closely with taxonomy or geography. Morphologically defined species formed largely cohesive genetic lineages across regions, with species identity explaining substantially more genetic variation than locality. While localized admixture and reticulation were detected among closely related taxa, widespread species showed strong genetic cohesion and clear separation from congeners. Our results indicate that the sampled Polylepis species from Bolivia and Ecuador maintain distinct genetic identities despite localized signals consistent with gene flow. This genome-wide support for current taxonomy highlights Polylepis as a valuable model for studying speciation under gene flow and indicates that multiple geographic sampling will be essential in reconstructing a robust phylogeny of the genus, with important implications for conservation planning in Andean montane forests.
Olivar, J.E.C., Lehnert, M., Durka, W., Michalski, S., Ritz, C.M., Ebersbach, J., Muellner-Riehl, A.N., Segovia-Salcedo, C., Acosta-Villamarín, S., Romoleroux, K., Muriel Mera, E.P., Trujillo, E.J., Gareca, E.E., Fernández, M., Mercado, M., Jimenez Rojas, A., Arrazola, S., Hensen, I., Kessler, M. (2026):
Genome-wide SNP data support species boundaries in sympatric Polylepis Ruiz & Pav. (Rosaceae) species from Bolivia and Ecuador
Mol. Phylogenet. Evol. 225 , art. 108722
10.1016/j.ympev.2026.108722