Publication Details |
| Category | Text Publication |
| Reference Category | Preprints |
| DOI | 10.1101/2024.12.23.629682 |
Licence  |
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| Title (Primary) | The Microbiology Galaxy Lab: A community-driven gateway to tools, workflows, and training for reproducible and FAIR analysis of microbial data |
| Author | Nasr, E.; Amato, P.; Bernt, M.
; Bhardwaj, A.; Blankenberg, D.; Brites, D.; Cumbo, F.; Do, K.; Ferrari, E.; Griffin, T.J.; Grüning, B.; Hiltemann, S.; Hyde, C.; Jagtap, P.; Mehta, S.; Métris, K.; Momin, S.; Price, G.R.; Oba, A.; Pavloudi, C.; Pechlivanis, N.; Péguilhan, R.; Psomopoulos, F.; Rosic, N.; Schatz, M.C.; Schiml, V.C.; Siguret, C.; Soranzo, N.; Stubbs, A.; van Heusden, P.; Vohra, M., microGalaxy Community; Zierep, P.; Batut, B. |
| Source Titel | bioRxiv |
| Year | 2025 |
| Department | COMPBC |
| Language | englisch |
| Topic | T9 Healthy Planet |
| Abstract | Microbial research generates vast and complex data from diverse omics technologies, demanding innovative analytical solutions. The microGalaxy community addresses these needs with the Microbiology Lab, a user-friendly platform that integrates 290+ tool suites and 85+ curated workflows for microbial analyses, including taxonomic profiling, assembly, annotation, and functional analysis. Hosted on several public Galaxy servers (microbiology.usegalaxy.org, .eu, .org.au, .fr), it supports workflow creation & customization, sharing, and updates across public and private Galaxy servers, ensuring flexibility and reproducibility. The platform also offers 35+ tutorials, 15+ instructional videos, and structured learning pathways, empowering researchers to conduct advanced analyses. Backed by a community-driven approach, the Microbiology Galaxy Lab ensures up-to-date tools and workflows through testing and semi-automatic updates to meet global research demands. With its focus on rapid workflow prototyping and high-throughput processing, the Microbiology Galaxy Lab provides scalable resources for researchers at all expertise levels. |
| Persistent UFZ Identifier | https://www.ufz.de/index.php?en=20939&ufzPublicationIdentifier=30692 |
| Nasr, E., Amato, P., Bernt, M., Bhardwaj, A., Blankenberg, D., Brites, D., Cumbo, F., Do, K., Ferrari, E., Griffin, T.J., Grüning, B., Hiltemann, S., Hyde, C., Jagtap, P., Mehta, S., Métris, K., Momin, S., Price, G.R., Oba, A., Pavloudi, C., Pechlivanis, N., Péguilhan, R., Psomopoulos, F., Rosic, N., Schatz, M.C., Schiml, V.C., Siguret, C., Soranzo, N., Stubbs, A., van Heusden, P., Vohra, M., microGalaxy Community, Zierep, P., Batut, B. (2025): The Microbiology Galaxy Lab: A community-driven gateway to tools, workflows, and training for reproducible and FAIR analysis of microbial data bioRxiv 10.1101/2024.12.23.629682 |
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