Publication Details |
| Category | Text Publication |
| Reference Category | Journals |
| DOI | 10.1093/bioadv/vbae072 |
Licence  |
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| Title (Primary) | DeGeCI 1.1: a web platform for gene annotation of mitochondrial genomes |
| Author | Fiedler, L.; Bernt, M.
; Middendorf, M. |
| Source Titel | Bioinformatics Advances |
| Year | 2024 |
| Department | COMPBC |
| Volume | 4 |
| Issue | 1 |
| Page From | vbae072 |
| Language | englisch |
| Topic | T9 Healthy Planet |
| Data and Software links | https://doi.org/10.5281/zenodo.8101631 https://git.informatik.uni-leipzig.de/lfiedler/degeci |
| Abstract | DeGeCI is a command line tool that generates fully automated de novo gene predictions from mitochondrial nucleotide sequences by using a reference database of annotated mitogenomes which is represented as a de Bruijn graph. The input genome is mapped to this graph, creating a subgraph, which is then post-processed by a clustering routine. Version 1.1 of DeGeCI offers a web front-end for GUI-based input. It also introduces a new taxonomic filter pipeline that allows the species in the reference database to be restricted to a user-specified taxonomic classification and allows for gene boundary optimization when providing the translation table of the input genome. |
| Persistent UFZ Identifier | https://www.ufz.de/index.php?en=20939&ufzPublicationIdentifier=29377 |
| Fiedler, L., Bernt, M., Middendorf, M. (2024): DeGeCI 1.1: a web platform for gene annotation of mitochondrial genomes Bioinform. Adv. 4 (1), vbae072 10.1093/bioadv/vbae072 |
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