Publication Details

Category Text Publication
Reference Category Journals
DOI 10.1101/gr.276963.122
Licence creative commons licence
Title (Primary) The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond
Author Bray, S.; Chilton, J.; Bernt, M. ORCID logo ; Soranzo, N.; van den Beek, M.; Batut, B.; Rasche, H.; Čech, M.; Cock, P.J.A.; Grüning, B.; Nekrutenko, A.
Source Titel Genome Research
Year 2023
Department BIOINF
Volume 33
Page From 261
Page To 268
Language englisch
Topic T9 Healthy Planet
Supplements https://genome.cshlp.org/content/suppl/2023/02/24/gr.276963.122.DC1/Supplemental_Code.tar.gz
Abstract There are thousands of well-maintained high-quality open-source software utilities for all aspects of scientific data analysis. For more than a decade, the Galaxy Project has been providing computational infrastructure and a unified user interface for these tools to make them accessible to a wide range of researchers. To streamline the process of integrating tools and constructing workflows as much as possible, we have developed Planemo, a software development kit for tool and workflow developers and Galaxy power users. Here we outline Planemo's implementation and describe its broad range of functionality for designing, testing, and executing Galaxy tools, workflows, and training material. In addition, we discuss the philosophy underlying Galaxy tool and workflow development, and how Planemo encourages the use of development best practices, such as test-driven development, by its users, including those who are not professional software developers.
Persistent UFZ Identifier https://www.ufz.de/index.php?en=20939&ufzPublicationIdentifier=23338
Bray, S., Chilton, J., Bernt, M., Soranzo, N., van den Beek, M., Batut, B., Rasche, H., Čech, M., Cock, P.J.A., Grüning, B., Nekrutenko, A. (2023):
The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond
Genome Res. 33 , 261 - 268 10.1101/gr.276963.122