In order to understand the groundwater dynamics and to improve the management of water resources in the Federal District of Brazil, this research proposes a 3D groundwater flow model to represent the groundwater level and flow system. The selected test site was the Pipiripau catchment. The development of the model was based on available geological, hydrogeological, geomorphological, climatological and pedological data. Geological and hydrogeological data were used to generate the 3D groundwater flow model. The 3D mesh elements of the domain were generated through the Groundwater Modeling System software, based on the logs of the well materials. The numerical simulation of the finite element method was implemented in the framework of the scientific software OpenGeoSys. With the 3D mesh-appropriated boundary conditions, annual average infiltration data and hydrogeological parameters were incorporated. Afterwards, the steady-state model was calibrated by the PEST software using available data of the water level from wells. The results showed the distribution of the steady-state hydraulic heads in the model domain, where the highest values occurred in the east and west recharge areas and the lowest values were found in the southwest of the basin. The results of this study can be a used as initial condition for the transient groundwater flow simulation and to provide a scientific basis for water resource management.