Details zur Publikation
Kategorie Textpublikation
Referenztyp Zeitschriften
DOI 10.1099/ijsem.0.006859
Titel (primär) Pseudogemmobacter sonorensis sp. nov., a new alphaproteobacterium isolated from the slime flux of a tree (Populus fremontii) in the Sonoran Desert (Arizona, USA)
Autor Lange-Enyedi, N.T.; Tóth, E.; Abbaszade, G.; Németh, P.; Garvie, L.A.J.; Wolf, J.; Neumann-Schaal, M.; Khayer, B.; Sipos, G.; Makk, J.
Quelle International Journal of Systematic and Evolutionary Microbiology
Erscheinungsjahr 2025
Department AME
Band/Volume 75
Heft 7
Seite von art. 006859
Sprache englisch
Topic T7 Bioeconomy
Keywords Populus fremontii; Pseudogemmobacter; slime flux; Sonoran Desert
Abstract The bacterial strain PA1-206B is a Gram-stain-negative, aerobic, non-motile and non-spore-forming bacterium with an irregular rod shape. It was isolated from a tree wound exudate of the trunk in the Sonoran Desert (USA), and its taxonomic position was investigated by a polyphasic approach. Strain PA1-206B grew optimally at 28–30 °C and from pH 6 to 10 without NaCl. Based on 16S rRNA gene sequence analysis, this isolate showed only 96.0% sequence similarity to the type strain of and similarity of 94.4–95.7% to other species of the genus. Phylogenetic analysis based on whole-proteome comparisons placed strain PA1-206B within the genus but, on a distinct branch, clearly separated from its closest relatives. The major isoprenoid quinone of the strain was ubiquinone Q-10. The predominant fatty acids (>5%) were C ω, C and 11-methyl-C ω. Diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, an unidentified aminolipid and two unidentified phospholipids were present. The assembled draft genome of strain PA1-206B had 115 contigs with a total length of 4.5 Mb and a G+C content of 67.4 mol%. The overall genome-related indices (average nucleotide identity <80.4%, average amino acid identity <70.6%, digital DNA–DNA hybridization <21.6%) with respect to close relatives were below the corresponding threshold to demarcate bacterial species. Strain PA1-206B (=DSM 115559=NCAIM B.02680) is suggested as the type strain of a novel species, for which the name sp. nov. is proposed.
dauerhafte UFZ-Verlinkung https://www.ufz.de/index.php?en=20939&ufzPublicationIdentifier=31228
Lange-Enyedi, N.T., Tóth, E., Abbaszade, G., Németh, P., Garvie, L.A.J., Wolf, J., Neumann-Schaal, M., Khayer, B., Sipos, G., Makk, J. (2025):
Pseudogemmobacter sonorensis sp. nov., a new alphaproteobacterium isolated from the slime flux of a tree (Populus fremontii) in the Sonoran Desert (Arizona, USA)
Int. J. Syst. Evol. Microbiol. 75 (7), art. 006859 10.1099/ijsem.0.006859