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ID	Publikation
15362	Arnold, C., Externbrink, F., Hackermüller, J., Reiche, K. (2014): CEM-Designer: design of custom expression microarrays in the post-ENCODE era J. Biotechnol. 189 , 154 - 156 Volltext (DOI)
19111	Binder, S., Hösler, N., Riedel, D., Zipfel, I., Buschmann, T., Kämpf, C., Reiche, K., Burger, R., Gramatzki, M., Hackermüller, J., Stadler, P.F., Horn, F. (2017): STAT3-induced long noncoding RNAs in multiple myeloma cells display different properties in cancer Sci. Rep. 7 , art. 7976 Volltext (DOI)
12164	Boll, K., Reiche, K., Kasack, K., Mörbt, N., Kretzschmar, A.K., Tomm, J.M., Verhaegh, G., Schalken, J., von Bergen, M., Horn, F., Hackermüller, J. (2013): MiR-130a, miR-203 and miR-205 jointly repress key oncogenic pathways and are downregulated in prostate carcinoma Oncogene 32 , 277 - 285 Volltext (DOI)
20951	Essig, K., Kronbeck, N., Guimaraes, J.C., Lohs, C., Schlundt, A., Hoffmann, A., Behrens, G., Brenner, S., Kowalska, J., Lopez-Rodriguez, C., Jemielity, J., Holtmann, H., Reiche, K., Hackermüller, J., Sattler, M., Zavolan, M., Heissmeyer, V. (2018): Roquin targets mRNAs in a 3′-UTR-specific manner by different modes of regulation Nat. Commun. 9 , art. 3810 Volltext (DOI)
23081	Friedrich, M., Wiedemann, K., Reiche, K., Puppel, S.-H., Pfeifer, G., Zipfel, I., Binder, S., Köhl, U., Müller, G.A., Engeland, K., Aigner, A., Füssel, S., Fröhner, M., Peitzsch, C., Dubrovska, A., Rade, M., Christ, S., Schreiber, S., Hackermüller, J., Lehmann, J., Toma, M.I., Muders, M.H., Sommer, U., Baretton, G.B., Wirth, M., Horn, F. (2020): The role of lncRNAs TAPIR-1 and -2 as diagnostic markers and potential therapeutic targets in prostate cancer Cancers 12 (5), art. 1122 Volltext (DOI)
14688	Hackermüller, J., Reiche, K., Otto, C., Hösler, N., Blumert, C., Brocke-Heidrich, K., Böhlig, L., Nitsche, A., Kasack, K., Ahnert, P., Krupp, W., Engeland, K., Stadler, P.F., Horn, F. (2014): Cell cycle, oncogenic and tumor suppressor pathways regulate numerous long and macro non-protein coding RNAs Genome Biol. 15 (3), R48 Volltext (DOI)
11731	Hösler, N., Hackermüller, J., Reiche, K., Horn, F. (2011): Identification of ncRNAs regulating differencoation and function of CD4+ T cells. PS2-061 Cytokine 56 (1), 81 - 81 Volltext (DOI)
22544	Kämpf, C., Specht, M., Scholz, A., Puppel, S.-H., Doose, G., Reiche, K., Schor, J., Hackermüller, J. (2019): uap: reproducible and robust HTS data analysis BMC Bioinformatics 20 , art. 664 Volltext (DOI)
16196	Kirsten, H., Al-Hasani, H., Holdt, L., Gross, A., Beutner, F., Krohn, K., Ahnert, P., Burkhardt, R., Reiche, K., Hackermüller, J., Löffler, M., Teupser, D., Thiery, J., Scholz, M. (2015): Dissecting the genetics of the human transcriptome identifies novel trait-related trans-eQTLs and corroborates the regulatory relevance of non-protein coding loci Hum. Mol. Genet. 24 (16), 4746 - 4763 Volltext (DOI)
23348	Kreuz, M., Otto, D.J., Fuessel, S., Blumert, C., Bertram, C., Bartsch, S., Loeffler, D., Puppel, S.-H., Rade, M., Buschmann, T., Christ, S., Erdmann, K., Friedrich, M., Froehner, M., Muders, M.H., Schreiber, S., Specht, M., Toma, M.I., Benigni, F., Freschi, M., Gandaglia, G., Briganti, A., Baretton, G.B., Loeffler, M., Hackermüller, J., Reiche, K., Wirth, M., Horn, F. (2020): ProstaTrend—A multivariable prognostic RNA expression score for aggressive prostate cancer Eur. Urol. 78 (3), 452 - 459 Volltext (DOI)
22921	Nitsche, A., Arnold, C., Ueberham, U., Reiche, K., Fallmann, J., Hackermüller, J., Horn, F., Stadler, P.F., Arendt, T. (2020): Alzheimer-related genes show accelerated evolution Mol. Psychiatr. Volltext (DOI)
16144	Nitsche, A., Rose, D., Fasold, M., Reiche, K., Stadler, P.F. (2015): Comparison of splice sites reveals that long noncoding RNAs are evolutionarily well conserved RNA 21 (5), 801 - 812 Volltext (DOI)
12542	Otto, C., Reiche, K., Hackermüller, J. (2012): Detection of differentially expressed segments in tiling array data Bioinformatics 28 (11), 1471 - 1479 Volltext (DOI)
19823	Rehage, N., Davydova, E., Conrad, C., Behrens, G., Maiser, A., Stehklein, J.E., Brenner, S., Klein, J., Jeridi, A., Hoffmann, A., Lee, E., Dianzani, U., Willemsen, R., Feederle, R., Reiche, K., Hackermüller, J., Leonhardt, H., Sharma, S., Niessing, D., Heissmeyer, V. (2018): Binding of NUFIP2 to Roquin promotes recognition and regulation of ICOS mRNA Nat. Commun. 9 , art. 299 Volltext (DOI)
15341	Reiche, K., Kasack, K., Schreiber, S., Lüders, T., Due, E.U., Naume, B., Riis, M., Kristensen, VN, Horn, F., Børresen-Dale, A.L., Hackermüller, J., Baumbusch, L.O. (2014): Long non-coding RNAs differentially expressed between normal versus primary breast tumor tissues disclose converse changes to breast cancer-related protein-coding genes PLOS One 9 (9), e106076 Volltext (DOI)
12938	Reiche, K., Schutt, K., Boll, K., Horn, F., Hackermüller, J. (2011): Bioinformatics for RNomics In: Mayer, B. (ed.) Bioinformatics for Omics data Methods in Molecular Biology 719 Humana Press, p. 299 - 330 Volltext (DOI)
21907	Schüttler, A., Altenburger, R., Ammar, M., Bader-Blukott, M., Jakobs, G., Knapp, J., Krüger, J., Reiche, K., Wu, G.-M., Busch, W. (2019): Map and model—moving from observation to prediction in toxicogenomics GigaScience 8 (6), giz057 Volltext (DOI)
18633	Schüttler, A., Reiche, K., Altenburger, R., Busch, W. (2017): The transcriptome of the zebrafish embryo after chemical exposure: a meta-analysis Toxicol. Sci. 157 (2), 291 - 304 Volltext (DOI)
12135	Tramontano, A., Donath, A., Bernhart, S.H., Reiche, K., Böhmdorfer, C., Stadler, P.F., Bachmair, A. (2011): Deletion analysis of the 3' long terminal repeat sequence of plant retrotransposon Tto1 identifies 125 base pairs redundancy as sufficient for first strand transfer Virology 412 (1), 75 - 82 Volltext (DOI)
12992	von Bergen, M., Reiche, K., Hösler, N., Rockstroh, M., Horn, F., Hackermüller, J., Tomm, J. (2012): A time resolved analysis of nc/mRNA and protein expression throughout Th cell activation Immunology 137 (Suppl. S1), 364 - 364 Volltext (DOI)
13925	Will, S., Siebauer, M.F., Heyne, S., Engelhardt, J., Stadler, P.F., Reiche, K., Backofen, R. (2013): LocARNAscan: Incorporating thermodynamic stability in sequence and structure-based RNA homology search Algorithms Mol. Biol. 8 , art. 14 Volltext (DOI)

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