21 Treffer
ID | Publikation | |
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15362 | Arnold, C., Externbrink, F., Hackermüller, J., Reiche, K. (2014): CEM-Designer: design of custom expression microarrays in the post-ENCODE era J. Biotechnol. 189 , 154 - 156 Volltext (DOI) |
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19111 | Binder, S., Hösler, N., Riedel, D., Zipfel, I., Buschmann, T., Kämpf, C., Reiche, K., Burger, R., Gramatzki, M., Hackermüller, J., Stadler, P.F., Horn, F. (2017): STAT3-induced long noncoding RNAs in multiple myeloma cells display different properties in cancer Sci. Rep. 7 , art. 7976 Volltext (DOI) |
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12164 | Boll, K., Reiche, K., Kasack, K., Mörbt, N., Kretzschmar, A.K., Tomm, J.M., Verhaegh, G., Schalken, J., von Bergen, M., Horn, F., Hackermüller, J. (2013): MiR-130a, miR-203 and miR-205 jointly repress key oncogenic pathways and are downregulated in prostate carcinoma Oncogene 32 , 277 - 285 Volltext (DOI) |
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20951 | Essig, K., Kronbeck, N., Guimaraes, J.C., Lohs, C., Schlundt, A., Hoffmann, A., Behrens, G., Brenner, S., Kowalska, J., Lopez-Rodriguez, C., Jemielity, J., Holtmann, H., Reiche, K., Hackermüller, J., Sattler, M., Zavolan, M., Heissmeyer, V. (2018): Roquin targets mRNAs in a 3′-UTR-specific manner by different modes of regulation Nat. Commun. 9 , art. 3810 Volltext (DOI) |
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23081 | Friedrich, M., Wiedemann, K., Reiche, K., Puppel, S.-H., Pfeifer, G., Zipfel, I., Binder, S., Köhl, U., Müller, G.A., Engeland, K., Aigner, A., Füssel, S., Fröhner, M., Peitzsch, C., Dubrovska, A., Rade, M., Christ, S., Schreiber, S., Hackermüller, J., Lehmann, J., Toma, M.I., Muders, M.H., Sommer, U., Baretton, G.B., Wirth, M., Horn, F. (2020): The role of lncRNAs TAPIR-1 and -2 as diagnostic markers and potential therapeutic targets in prostate cancer Cancers 12 (5), art. 1122 Volltext (DOI) |
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14688 | Hackermüller, J., Reiche, K., Otto, C., Hösler, N., Blumert, C., Brocke-Heidrich, K., Böhlig, L., Nitsche, A., Kasack, K., Ahnert, P., Krupp, W., Engeland, K., Stadler, P.F., Horn, F. (2014): Cell cycle, oncogenic and tumor suppressor pathways regulate numerous long and macro non-protein coding RNAs Genome Biol. 15 (3), R48 Volltext (DOI) |
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11731 | Hösler, N., Hackermüller, J., Reiche, K., Horn, F. (2011): Identification of ncRNAs regulating differencoation and function of CD4+ T cells. PS2-061 Cytokine 56 (1), 81 - 81 Volltext (DOI) |
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22544 | Kämpf, C., Specht, M., Scholz, A., Puppel, S.-H., Doose, G., Reiche, K., Schor, J., Hackermüller, J. (2019): uap: reproducible and robust HTS data analysis BMC Bioinformatics 20 , art. 664 Volltext (DOI) |
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16196 | Kirsten, H., Al-Hasani, H., Holdt, L., Gross, A., Beutner, F., Krohn, K., Ahnert, P., Burkhardt, R., Reiche, K., Hackermüller, J., Löffler, M., Teupser, D., Thiery, J., Scholz, M. (2015): Dissecting the genetics of the human transcriptome identifies novel trait-related trans-eQTLs and corroborates the regulatory relevance of non-protein coding loci Hum. Mol. Genet. 24 (16), 4746 - 4763 Volltext (DOI) |
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23348 | Kreuz, M., Otto, D.J., Fuessel, S., Blumert, C., Bertram, C., Bartsch, S., Loeffler, D., Puppel, S.-H., Rade, M., Buschmann, T., Christ, S., Erdmann, K., Friedrich, M., Froehner, M., Muders, M.H., Schreiber, S., Specht, M., Toma, M.I., Benigni, F., Freschi, M., Gandaglia, G., Briganti, A., Baretton, G.B., Loeffler, M., Hackermüller, J., Reiche, K., Wirth, M., Horn, F. (2020): ProstaTrend—A multivariable prognostic RNA expression score for aggressive prostate cancer Eur. Urol. 78 (3), 452 - 459 Volltext (DOI) |
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22921 | Nitsche, A., Arnold, C., Ueberham, U., Reiche, K., Fallmann, J., Hackermüller, J., Horn, F., Stadler, P.F., Arendt, T. (2020): Alzheimer-related genes show accelerated evolution Mol. Psychiatr. Volltext (DOI) |
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16144 | Nitsche, A., Rose, D., Fasold, M., Reiche, K., Stadler, P.F. (2015): Comparison of splice sites reveals that long noncoding RNAs are evolutionarily well conserved RNA 21 (5), 801 - 812 Volltext (DOI) |
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12542 | Otto, C., Reiche, K., Hackermüller, J. (2012): Detection of differentially expressed segments in tiling array data Bioinformatics 28 (11), 1471 - 1479 Volltext (DOI) |
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19823 | Rehage, N., Davydova, E., Conrad, C., Behrens, G., Maiser, A., Stehklein, J.E., Brenner, S., Klein, J., Jeridi, A., Hoffmann, A., Lee, E., Dianzani, U., Willemsen, R., Feederle, R., Reiche, K., Hackermüller, J., Leonhardt, H., Sharma, S., Niessing, D., Heissmeyer, V. (2018): Binding of NUFIP2 to Roquin promotes recognition and regulation of ICOS mRNA Nat. Commun. 9 , art. 299 Volltext (DOI) |
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15341 | Reiche, K., Kasack, K., Schreiber, S., Lüders, T., Due, E.U., Naume, B., Riis, M., Kristensen, VN, Horn, F., Børresen-Dale, A.L., Hackermüller, J., Baumbusch, L.O. (2014): Long non-coding RNAs differentially expressed between normal versus primary breast tumor tissues disclose converse changes to breast cancer-related protein-coding genes PLOS One 9 (9), e106076 Volltext (DOI) |
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12938 | Reiche, K., Schutt, K., Boll, K., Horn, F., Hackermüller, J. (2011): Bioinformatics for RNomics In: Mayer, B. (ed.) Bioinformatics for Omics data Methods in Molecular Biology 719 Humana Press, p. 299 - 330 Volltext (DOI) |
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21907 | Schüttler, A., Altenburger, R., Ammar, M., Bader-Blukott, M., Jakobs, G., Knapp, J., Krüger, J., Reiche, K., Wu, G.-M., Busch, W. (2019): Map and model—moving from observation to prediction in toxicogenomics GigaScience 8 (6), giz057 Volltext (DOI) |
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18633 | Schüttler, A., Reiche, K., Altenburger, R., Busch, W. (2017): The transcriptome of the zebrafish embryo after chemical exposure: a meta-analysis Toxicol. Sci. 157 (2), 291 - 304 Volltext (DOI) |
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12135 | Tramontano, A., Donath, A., Bernhart, S.H., Reiche, K., Böhmdorfer, C., Stadler, P.F., Bachmair, A. (2011): Deletion analysis of the 3' long terminal repeat sequence of plant retrotransposon Tto1 identifies 125 base pairs redundancy as sufficient for first strand transfer Virology 412 (1), 75 - 82 Volltext (DOI) |
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12992 | von Bergen, M., Reiche, K., Hösler, N., Rockstroh, M., Horn, F., Hackermüller, J., Tomm, J. (2012): A time resolved analysis of nc/mRNA and protein expression throughout Th cell activation Immunology 137 (Suppl. S1), 364 - 364 Volltext (DOI) |
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13925 | Will, S., Siebauer, M.F., Heyne, S., Engelhardt, J., Stadler, P.F., Reiche, K., Backofen, R. (2013): LocARNAscan: Incorporating thermodynamic stability in sequence and structure-based RNA homology search Algorithms Mol. Biol. 8 , art. 14 Volltext (DOI) |