List of Peer Reviewed Publications
2021
- Bandara, CD., Schmidt, M., Davoudpour, Y., Stryhanyuk, H., Richnow, HH., Musat, N., (2021): Microbial Identification, High-Resolution Microscopy and Spectrometry of the Rhizosphere in Its Native Spatial Context. Front. Plant Sci. 12:668929.
DOI: 10.3389/fpls.2021.668929
Link - Bienert, D., Werner, L., Wimmer, M., Bienert, P., (2021): Root hairs: the villi of plants. Biochem Soc Trans (2021) BST20200716
DOI: 10.1042/BST20200716
Link - Bonkowski, M., Tarkka, M., Razavi, B., Schmidt, H., Blagodatskaya, E., Koller, R., Yu, P., Knief, C., Hochholdinger, F., and Vetterlein, D., (2021): Spatiotemporal Dynamics of Maize (Zea mays L.) Root Growth and Its Potential Consequences for the Assembly of the Rhizosphere Microbiota. Front. Microbiol. 12:619499
DOI: 10.3389/fmicb.2021.619499
Download - Cai, C., Carminati, A., Abdalla M., Ahmed, M., (2021): Soil textures rather than root hairs dominate water uptake and soil-plant hydraulics under drought. Plant Physiol. kiab271
DOI: 10.1093/plphys/kiab271
Link - Ganther, M., Vetterlein, D., Heintz-Buschart, A., Tarkka M., (2021): Transcriptome sequencing analysis of maize roots reveals the effects of substrate and root hair formation in a spatial context. Plant Soil
DOI: 10.1007/s11104-021-04921-0
Link - Gebauer, L., Bouffaud, M., Ganther, M., Yim, B., Vetterlein, D.,
Smalla, K., Buscot, F., Heintz-Buschart, A., Tarkka, M., (2021): Soil texture, sampling depth and root hairs shape the structure of ACC deaminase bacterial community composition in maize rhizosphere. Front. Microbiol. 12:616828
DOI: 10.3389/fmicb.2021.616828
Link - Guber, A., Blagodatskaya, E., Juyal, A., Razavi, B.S., Kuzyakov, Y., Kravchenko, A., (2021): Time-lapse approach to correct deficiencies of 2D soil zymography. Soil Biol Biochem, 157:108225
DOI: 10.1016/j.soilbio.2021.108225
Link - Haupenthal, A., Brax, M., Bentz, J., Jungkunst, H., Schützenmeister, K., Kroener, E., (2021): Plants control soil gas exchanges possibly via mucilage. J. Plant Nutr. Soil Sci. 184(3): 320-328.
DOI: 10.1002/jpln.202000496
Link - Landl, M., Phalempin, M., Schlüter, S., Vetterlein, D., Vanderborght, J., Kroener, E., Schnepf, A., (2021): Modeling the Impact of Rhizosphere Bulk Density and Mucilage Gradients on Root Water Uptake. Front. Agron. 3:622367
DOI: 10.3389/fagro.2021.622367
Link Download - Lippold, E., Kleinau, P., Blaser, S., Schlüter, S., Phalempin, M., Vetterlein, D., (2021): In soil measurement of radiation dose caused by X-ray computed tomography. J. Plant Nutr. Soil Sci. 2021, 000, 1–3
DOI: 10.1002/jpln.202000276
Link - Lippold, E., Phalempin, M., Schlüter, S., Vetterlein, D., (2021): Does the lack of root hairs alter root system architecture of Zea mays? Plant Soil, PLSO-D-20-01901
DOI: 10.1007/s11104-021-05084-8
Link Download Download Supplement - Phalempin, M., Lippold, E., Vetterlein, D., Schlüter, S., (2021): Soil texture and structure heterogeneity predominantly governs bulk density gradients around roots. Vadose Zone J
DOI: 10.1002/vzj2.20147
Link - Phalempin, M., Lippold, E., Vetterlein, D., Schlüter, S., (2021): An improved method for the segmentation of roots from X‑ray computed tomography 3D images: Rootine v.2. Plant Methods (2021) 17:39
DOI: 10.1186/s13007-021-00735-4
Link Download - Rüger, L., Feng, K., Dumack, K., Freudenthal, J., Chen, Y., Sun, R., Wilson, M., Yu, P., Sun, B., Deng, Y., Hochholdinger, F., Vetterlein, D., Bonkowski, M., (2021): Assembly Patterns of the Rhizosphere Microbiome Along the Longitudinal Root Axis of Maize (Zea mays L.). Front. Microbiol. 12:614501.
DOI: 10.3389/fmicb.2021.614501
Link - Szoboszlay, M., Tebbe, C., (2021): Hidden heterogeneity and co-occurrence networks of soil prokaryotic communities revealed at the scale of individual soil aggregates. Microbiologyopen 10(1): 16.
DOI: 10.1002/mbo3.1144
Link - Vanderborght, J., Couvreur, V., Meunier, F., Schnepf, A., Vereecken, H., Bouda, M., Javaux, M. (2021): From hydraulic root architecture models to macroscopic representations of root hydraulics in soil water flow and land surface models. Hydrol. Earth Syst. Sci. 25 (9)
DOI: 10.5194/hess-25-4835-2021
Link - Vergara Sosa, M., Lehndorff, E., Rodionov, A., Gocke, M.,
Sandhage-Hofmann A., Amelung, W., (2021): Micro-scale resolution of carbon turnover in soil - Insights from laser ablation isotope ratio mass spectrometry on water-glass embedded aggregates. Soil Biol Biochem 159 (2021) 108279.
DOI: 10.1016/j.soilbio.2021.108279
Link - Vetterlein, D., Lippold, E., Schreiter, S., Phalempin, M., Fahrenkampf, T., Hochholdinger, F., Marcon, C., Tarkka, M., Oburger, E., Ahmed, M., Javaux, M., Schlüter, S., (2021): Experimental platforms for the investigation of
spatiotemporal patterns in the rhizosphere – laboratory and field scale. J. Plant Nutr. Soil Sci. 2021, 184, 35–50
DOI: 10.1002/jpln.202000079
Link - Yu, P., He, X., Baer, M., Beirinckx, S., Tian, T., Moya, YAT., Zhang, Y., Deichmann, M., Frey, FP., Bresgen, V., Li, C., Razavi, BS., Schaaf, G., von Wirén, N., Su, Z., Bucher, M., Tsuda, K., Goormachtig, S., Chen, X., Hochholdinger, F., (2021): Plant flavones enrich rhizosphere Oxalobacteraceae to improve maize performance under nitrogen deprivation. Nat Plants 7: 481–499.
DOI:10.1038/s41477-021-00897-y
Link
2020
- Carminati, A., Ahmed, M., Zarebanadkouki, M., Cai, G., Lovric, G., Javaux, M., (2020): Stomatal closure prevents the drop in soil water potential around roots. New Phytol. 26:6, 1541-1543
DOI: org/10.1111/nph.16451
Link - Davoudpour, Y., Schmidt, M., Calabrese, F., Richnow, H. H., Musat N., (2020): High resolution microscopy to evaluate the efficiency of surface sterilization of Zea Mays seeds. PLoS ONE 15(11): e0242247
DOI: 10.1371/journal.pone.0242247
Link Download - Ganther, M., Yim, B., Ibrahim, Z., Bienert, D., Lippold, E., Maccario, L., Sørensen, S. J., Bienert, P., Vetterlein, D., Heintz-Buschart, A., Blagodatskaya, E., Smalla, K., Tarkka, M., (2020): Compatibility of X-ray computed tomography with plant gene expression, rhizosphere bacterial communities and enzyme activities. J. Exp. Bot. 262
DOI: org/10.1093/jxb/eraa262
Link - Lohse, M., Blaser, S., Vetterlein, D., Schlüter, S., Oburger, E., Reemtsma, T., Lechtenfeld, O. , (2020): On-line nano-solid phase extraction Fourier-transform ion cyclotron resonance mass spectrometry workflow to analyze small scale gradients of soil solution organic matter in the rhizosphere. Anal. Chem. 92, 15, 10442–10449
DOI: org/10.1021/acs.analchem.0c00946
Link - Vetterlein, D., Carminati, A., Kögel-Knabner, I., Bienert, P., Smalla, K., Oburger, E., Schnepf, A., Banitz, T., Tarkka, M., Schlüter, S., (2020): Rhizosphere Spatiotemporal Organization – A Key to Rhizosphere Functions. Front. Agron. 2:8
DOI: 10.3389/fagro.2020.00008
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2019
- Benard, P., Zarebanadkouki, M., Brax, M., Kaltenbach, R., Jerjen, I., Marone, F., (2019): Microhydrological Niches in Soils: How Mucilage and EPS Alter the Biophysical Properties of the Rhizosphere and Other Biological Hotspots. Vadose Zone J, 18(1), 1–10.
DOI: 10.2136/vzj2018.12.0211
Link
2018
- Guber A., Kravchenko A., Razavi BS., Blagodatskaya E., Kuzyakov Y., (2018): Calibration of 2‐D soil zymography for correct analysis of enzyme distribution. Eur J Soil Sci. 70:4, 715-726
DOI: org/10.1111/ejss.12744
Link - Guber A., Kravchenko A., Razavi BS., Uteau D., Peth S., Blagodatskaya E., Kuzyakov Y., (2018): Quantitative soil zymography: Mechanisms, processes of substrate and enzyme diffusion in porous media. Soil Biol Biochem. 127:156-67
DOI: org/10.1016/j.soilbio.2018.09.030
Link - Schlüter, S., Blaser, S.R., Weber, M., Schmidt, V., Vetterlein, D., (2018): Quantification of root growth patterns from the soil perspective via root distance models. Front. Plant Sci. 9 , art. 1084
DOI: 10.3389/fpls.2018.01084
Download - Vetterlein, D., Schlüter, S., Vogel, H.-J., (2018): Roots out of sight, not out of mind
Nature 554 (7693), 423
Download - Yu, P., Hochholdinger, F., (2018): The role of host genetic signatures on root-microbe interactions in the rhizosphere and endosphere. Front Plant Sci 9:1896.
DOI: 10.3389/fpls.2018.01896
Link
List of Book Chapters
2021
- Ahmed, M., Vetterlein,D., Carminati, A., (2021): Advances in understanding plant root water uptake. Peter Gregory (Hrsg.), Understanding and improving crop root function. Burleigh Dodds Series in Agricultural Science.
DOI: org/10.19103/AS.2020.0075.17
Link