257 Hits
ID | publication | |
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17871 | Aigner, A., Buesen, R., Gant, C., Gooderham, N., Greim, H., Hackermüller, J., Hubesch, B., Laffont, M., Marczylo, E., Meister, G., Petrick, J.S., Rasoulpour, R.J., Sauer, U.G., Schmidt, K., Seitz, H., Slack, F., Sukata, T., van der Vies, S.M., Verhaert, J., Witwer, K.W., Poole, A. (2016): Advancing the use of noncoding RNA in regulatory toxicology: Report of an ECETOC workshop Regul. Toxicol. Pharmacol. 82 , 127 - 139 full text (doi) |
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19180 | Al Arab, M., Bernt, M., Höner zu Siederdissen, C., Tout, K., Stadler, P.F. (2017): Partially local three-way alignments and the sequence signatures of mitochondrial genome rearrangements Algorithms Mol. Biol. 12 , art. 22 full text (doi) |
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22888 | Ananbeh, H., Merlos Rodrigo, M.A., Jelinkova, P., Strmiska, V., Splichal, Z., Jehmlich, N., Michalkova, H., Stojanović, M., Voberkova, S., Adam, V., Moulick, A. (2020): Soil protein as a potential antimicrobial agent against methicillin-resistant Staphylococcus aureus Environ. Res. 188 , art. 109320 full text (doi) |
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22245 | Anselmann, S.E.L., Löffler, C., Stärk, H.-J., Jehmlich, N., von Bergen, M., Brüls, T., Boll, M. (2019): The class II benzoyl‐coenzyme A reductase complex from the sulfate‐reducing Desulfosarcina cetonica Environ. Microbiol. 21 (11), 4241 - 4252 full text (doi) |
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18896 | Aurich, S., Seitz, A.-T., Tomm, J., Simon, J.-C., Treudler, R. (2016): A case of anaphylaxis to patent blue in a patient with sentinel lymph node excision Iran. J. Allergy Asthma Immunol. 15 (6), 547 - 550 full text (url) |
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23122 | Balogh, G., Bernhart, S.H., Stadler, P.F., Schor, J. (2020): A probabilistic version of Sankoff’s maximum parsimony algorithm J. Bioinform. Comput. Biol. 18 (1), art. 2050004 full text (doi) |
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22534 | Bannuscher, A., Karkossa, I., Buhs, S., Nollau, P., Kettler, K., Balas, M., Dinischiotu, A., Hellack, B., Wiemann, M., Luch, A., von Bergen, M., Haase, A., Schubert, K. (2020): A multi-omics approach reveals mechanisms of nanomaterial toxicity and structure–activity relationships in alveolar macrophages Nanotoxicology 14 (2), 181 - 195 full text (doi) |
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21395 | Bastida, F., Crowther, T.W., Prieto, I., Routh, D., García, C., Jehmlich, N. (2018): Climate shapes the protein abundance of dominant soil bacteria Sci. Total Environ. 640–641 , 18 - 21 full text (doi) |
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22110 | Bastida, F., García, C., Fierer, N., Eldridge, D.J., Bowker, M.A., Abades, S., Alfaro, F.D., Berhe, A.A., Cutler, N.A., Gallardo, A., García-Velázquez, L., Hart, S.C., Hayes, P.E., Hernández, T., Hseu, Z.-Y., Jehmlich, N., Kirchmair, M., Lambers, H., Neuhauser, S., Peña-Ramírez, V.M., Pérez, C.A., Reed, S.C., Santos, F.A.M., Siebe, C., Sullivan, B.W., Trivedi, P., Vera, A., Williams, M.A., Moreno, J.L., Delgado-Baquerizo, M. (2019): Global ecological predictors of the soil priming effect Nat. Commun. 10 , art. 3481 full text (doi) |
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17882 | Bastida, F., Jehmlich, N. (2016): It's all about functionality: How can metaproteomics help us to discuss the attributes of ecological relevance in soil? J. Proteomics 144 , 159 - 161 full text (doi) |
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17181 | Bastida, F., Jehmlich, N., Lima, K., Morris, B.E.L., Richnow, H.H., Hernández, T., von Bergen, M., García, C. (2016): The ecological and physiological responses of the microbial community from a semiarid soil to hydrocarbon contamination and its bioremediation using compost amendment J. Proteomics 135 , 162 - 169 full text (doi) |
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21543 | Bastida, F., Jehmlich, N., Martínez-Navarro, J., Bayona, V., García, C., Moreno, J.L. (2019): The effects of struvite and sewage sludge on plant yield and the microbial community of a semiarid Mediterranean soil Geoderma 337 , 1051 - 1057 full text (doi) |
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19961 | Bastida, F., Jehmlich, N., Torres, I.F., García, C. (2018): The extracellular metaproteome of soils under semiarid climate: A methodological comparison of extraction buffers Sci. Total Environ. 619–620 , 707 - 711 full text (doi) |
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21643 | Bastida, F., López-Mondéjar, R., Baldrian, P., Andrés-Abellán, M., Jehmlich, N., Torres, I.F., García, C., López-Serrano, F.R. (2019): When drought meets forest management: Effects on the soil microbial community of a Holm oak forest ecosystem Sci. Total Environ. 662 , 276 - 286 full text (doi) |
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19284 | Bastida, F., Torres, I.F., Andrés-Abellán, M., Baldrian, P., López-Mondéjar, R., Větrovský, T., Richnow, H.H., Starke, R., Ondoño, S., García, C., López-Serrano, F., Jehmlich, N. (2017): Differential sensitivity of total and active soil microbial communities to drought and forest management Glob. Change Biol. 23 (10), 4185 - 4203 full text (doi) |
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17869 | Bastida, F., Torres, I.F., Moreno, J.L., Baldrian, P., Ondoño, S., Ruiz-Navarro, A., Hernández, T., Richnow, H.H., Starke, R., García, C., Jehmlich, N. (2016): The active microbial diversity drives ecosystem multifunctionality and is physiologically related to carbon availability in Mediterranean semi-arid soils Mol. Ecol. 25 (18), 4660 - 4673 full text (doi) |
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21108 | Bauer, M., Hackermüller, J., Schor, J., Schreiber, S., Fink, B., Pierzchalski, A., Herberth, G. (2019): Specific induction of the unique GPR15 expression in heterogeneous blood lymphocytes by tobacco smoking Biomarkers 24 (3), 217 - 224 full text (doi) |
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17283 | Bauer, T., Trump, S., Ishaque, N., Thürmann, L., Gu, L., Bauer, M., Bieg, M., Gu, Z., Weichenhan, D., Mallm, J.-P., Röder, S., Herberth, G., Takada, E., Mücke, O., Winter, M., Junge, K.M., Grützmann, K., Rolle-Kampczyk, U., Wang, Q., Lawerenz, C., Borte, M., Polte, T., Schlesner, M., Schanne, M., Wiemann, S., Geörg, C., Stunnenberg, H.G., Plass, C., Rippe, K., Mizuguchi, J., Herrmann, C., Eils, R., Lehmann, I. (2016): Environment-induced epigenetic reprogramming in genomic regulatory elements in smoking mothers and their children Mol. Syst. Biol. 12 (3), art. 861 full text (doi) |
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20250 | Becher, E., Heese, A., Claußen, L., Eisen, S., Jehmlich, N., Rohwerder, T., Purswani, J. (2018): Active site alanine preceding catalytic cysteine determines unique substrate specificity in bacterial CoA‐acylating prenal dehydrogenase FEBS Lett. 592 (7), 1150 - 1160 full text (doi) |
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23714 | Bedulina, D., Drozdova, P., Gurkov, A., von Bergen, M., Stadler, P.F., Luckenbach, T., Timofeyev, M., Kalkhof, S. (2021): Proteomics reveals sex-specific heat shock response of Baikal amphipod Eulimnogammarus cyaneus Sci. Total Environ. 763 , art. 143008 full text (doi) |
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19972 | Behrens, G., Winzen, R., Rehage, N., Dörrie, A., Barsch, M., Hoffmann, A., Hackermüller, J., Tiedje, C., Heissmeyer, V., Holtmann, H. (2018): A translational silencing function of MCPIP1/Regnase-1 specified by the target site context Nucleic Acids Res. 46 (8), 4256 - 4270 full text (doi) |
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19586 | Benndorf, D. (Hrsg., 2000): Molekulare Mechanismen der Resistenz von Bakterien gegenüber Xenobiotika UFZ-Bericht 22/2000 UFZ Leipzig-Halle GmbH, Leipzig, 95 S. |
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18210 | Bhattacharya, D.P., Canzler, S., Kehr, S., Hertel, J., Grosse, I., Stadler, P.F. (2016): Phylogenetic distribution of plant snoRNA families BMC Genomics 17 , art. 969 full text (doi) |
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19111 | Binder, S., Hösler, N., Riedel, D., Zipfel, I., Buschmann, T., Kämpf, C., Reiche, K., Burger, R., Gramatzki, M., Hackermüller, J., Stadler, P.F., Horn, F. (2017): STAT3-induced long noncoding RNAs in multiple myeloma cells display different properties in cancer Sci. Rep. 7 , art. 7976 full text (doi) |
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17355 | Braasch, I., Gehrke, A.R., Smith, J.J., Kawasaki, K., Manousaki, T., Pasquier, J., Amores, A., Desvignes, T., Batzel, P., Catchen, J., Berlin, A.M., Campbell, M.S., Barrell, D., Martin, K.J., Mulley, J.F., Ravi, V., Lee, A.P., Nakamura, T., Chalopin, D., Fan, S., Wcisel, D., Cañestro, C., Sydes, J., Beaudry, F.E.G., Sun, Y., Hertel, J., Beam, M.J., Fasold, M., Ishiyama, M., Johnson, J., Kehr, S., Lara, M., Letaw, J.H., Litman, G.W., Litman, R.T., Mikami, M., Ota, T., Saha, N.R., Williams, L., Stadler, P.F., Wang, H., Taylor, J.S., Fontenot, Q., Ferrara, A., Searle, S.M.J., Aken, B., Yandell, M., Schneider, I., Yoder, J.A., Volff, J.-N., Meyer, A., Amemiya, C.T., Venkatesh, B., Holland, P.W.H., Guiguen, Y., Bobe, J., Shubin, N.H., Di Palma, F., Alföldi, J., Lindblad-Toh, K., Postlethwait, J.H. (2016): The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons Nature Genet. 48 (4), 427 - 437 full text (doi) |
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19333 | Buesen, R., Chorley, B.N., da Silva Lima, B., Daston, G., Deferme, L., Ebbels, T., Gant, T.W., Goetz, A., Greally, J., Gribaldo, L., Hackermüller, J., Hubesch, B., Jennen, D., Johnson, K., Kanno, J., Kauffmann, H.-M., Laffont, M., McMullen, P., Meehan, R., Pemberton, M., Perdichizzi, S., Piersma, A.H., Sauer, U.G., Schmidt, K., Seitz, H., Sumida, K., Tollefsen, K.E., Tong, W., Tralau, T., van Ravenzwaay, B., Weber, R.J.M., Worth, A., Yauk, C., Poole, A. (2017): Applying 'omics technologies in chemicals risk assessment: Report of an ECETOC workshop Regul. Toxicol. Pharmacol. 91 (Suppl. 1), S3 - S13 full text (doi) |
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22243 | Buettner, C., von Bergen, M., Jehmlich, N., Noll, M. (2019): Pseudomonas spp. are key players in agricultural biogas substrate degradation Sci. Rep. 9 , 12871 full text (doi) |
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20822 | Bulitta, B., Zuschratter, W., Bernal, I., Bruder, D., Klawonn, F., von Bergen, M., Garritsen, H.S.P., Jänsch, L. (2018): Proteomic definition of human mucosal‐associated invariant T cells determines their unique molecular effector phenotype Eur. J. Immunol. 48 (8), 1336 - 1349 full text (doi) |
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20683 | Campoy, C., Cerdó, T., Ruiz, A., Jauregui, R., von Bergen, M., Suarez, A. (2018): Maternal pre-pregnancy body mass index imprints a gut microbial community composition with a specific functionality Ann. Nutr. Metab. 73 (Suppl. 2), 55 full text (doi) |
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23929 | Canzler, S., Hackermüller, J. (2020): multiGSEA: a GSEA-based pathway enrichment analysis for multi-omics data BMC Bioinformatics 21 , art. 561 full text (doi) |
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22778 | Canzler, S., Schor, J., Busch, W., Schubert, K., Rolle-Kampczyk, U.E., Seitz, H., Kamp, H., von Bergen, M., Buesen, R., Hackermüller, J. (2020): Prospects and challenges of multi‑omics data integration in toxicology Arch. Toxicol. 94 (2), 371 - 388 full text (doi) |
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17254 | Canzler, S., Stadler, P.F., Hertel, J. (2016): U6 snRNA intron insertion occurred multiple times during fungi evolution RNA Biol. 13 (2), 119 - 127 full text (doi) |
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21393 | Canzler, S., Stadler, P.F., Hertel, J. (2017): Evolution of fungal U3 snoRNAs: Structural variation and introns Non-Coding RNA 3 (1), art. 3 full text (doi) |
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20004 | Canzler, S., Stadler, P.F., Schor, J. (2018): The fungal snoRNAome RNA 24 (3), 342 - 360 full text (doi) |
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20844 | Cerdó, T., Ruiz, A., Acuña, I., Jáuregui, R., Jehmlich, N., Haange, S.-B., von Bergen, M., Suárez, A., Campoy, C. (2018): Gut microbial functional maturation and succession during human early life Environ. Microbiol. 20 (6), 2160 - 2177 full text (doi) |
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24439 | Chen, J., Haase, N., Haange, S.-B., Sucher, R., Münzker, J., Jäger, E., Schischke, K., Seyfried, F., von Bergen, M., Hankir, M.K., Krügel, U., Fenske, W.K. (2021): Roux-en-Y gastric bypass contributes to weight loss-independent improvement in hypothalamic inflammation and leptin sensitivity through gut-microglia-neuron-crosstalk Mol. Metab. full text (doi) |
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19570 | Chupani, L., Niksirat, H., Lünsmann, V., Haange, S.-B., von Bergen, M., Jehmlich, N., Zuskova, E. (2018): Insight into the modulation of intestinal proteome of juvenile common carp (Cyprinus carpio L.) after dietary exposure to ZnO nanoparticles Sci. Total Environ. 613-614 , 62 - 71 full text (doi) |
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18492 | Chupani, L., Zusková, É., Niksirat, H., Panáček, A., Lünsmann, V., Haange, S.-B., von Bergen, M., Jehmlich, N. (2017): Effects of chronic dietary exposure of zinc oxide nanoparticles on the serum protein profile of juvenile common carp (Cyprinus carpio L.) Sci. Total Environ. 579 , 1504 - 1511 full text (doi) |
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21400 | de Araujo Oliveira, J.V., Costa, F., Backofen, R., Stadler, P.F., Walter, M.E.M.T., Hertel, J. (2016): SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identification BMC Bioinformatics 17 (Suppl 18), art. 464 full text (doi) |
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21292 | Deutsch, E.W., Perez-Riverol, Y., Chalkley, R.J., Wilhelm, M., Tate, S., Sachsenberg, T., Walzer, M., Käll, L., Delanghe, B., Böcker, S., Schymanski, E.L., Wilmes, P., Dorfer, V., Kuster, B., Volders, P.-J., Jehmlich, N., Vissers, J.P.C., Wolan, D.W., Wang, A.Y., Mendoza, L., Shofstahl, J., Dowsey, A.W., Griss, J., Salek, R.M., Neumann, S., Binz, P.-A., Lam, H., Vizcaíno, J.A., Bandeira, N., Röst, H. (2018): Expanding the use of spectral libraries in proteomics J. Proteome Res. 17 (12), 4051 - 4060 full text (doi) |
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17902 | Dey, P., Gola, D., Mishra, A., Malik, A., Kumar, P., Singh, D.K., Patel, N., von Bergen, M., Jehmlich, N. (2016): Comparative performance evaluation of multi-metal resistant fungal strains for simultaneous removal of multiple hazardous metals J. Hazard. Mater. 318 , 679 - 685 full text (doi) |
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22942 | Dey, P., Malik, A., Mishra, A., Singh, D.K., von Bergen, M., Jehmlich, N. (2020): Mechanistic insight to mycoremediation potential of a metal resistant fungal strain for removal of hazardous metals from multimetal pesticide matrix Environ. Pollut. 262 , art. 114255 full text (doi) |
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18498 | Dietrich, S., Floegel, A., Troll, M., Kühn, T., Rathmann, W., Peters, A., Sookthai, D., von Bergen, M., Kaaks, R., Adamski, J., Prehn, C., Boeing, H., Schulze, M.B., Illig, T., Pischon, T., Knüppel, S., Wang-Sattler, R., Drogan, D. (2016): Random Survival Forest in practice: a method for modelling complex metabolomics data in time to event analysis Int. J. Epidemiol. 45 (5), 1406 - 1420 full text (doi) |
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22589 | Donath, A., Jühling, F., Al-Arab, M., Bernhart, S.H., Reinhardt, F., Stadler, P.F., Middendorf, M., Bernt, M. (2019): Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes Nucleic Acids Res. 47 (20), 10543 - 10552 full text (doi) |
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17380 | Dragelj, J.L., Stanković, I.M., Božinovski, D.M., Meyer, T., Veljković, D.Ž., Medaković, V.B., Knapp, E.W., Zarić, S.D. (2016): C–H/O interactions of aromatic CH donors within proteins: a crystallographic study Cryst. Growth Des. 16 (4), 1948 - 1957 full text (doi) |
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21932 | Drozdova, P., Bedulina, D., Madyarova, E., Rivarola-Duarte, L., Schreiber, S., Stadler, P.F., Luckenbach, T., Timofeyev, M. (2019): Description of strongly heat-inducible heat shock protein 70 transcripts from Baikal endemic amphipods Sci. Rep. 9 , art. 8907 full text (doi) |
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22169 | Drozdova, P., Rivarola-Duarte, L., Bedulina, D., Axenov-Gribanov, D., Schreiber, S., Gurkov, A., Shatilina, Z., Vereshchagina, K., Lubyaga, Y., Madyarova, E., Otto, C., Jühling, F., Busch, W., Jakob, L., Lucassen, M., Sartoris, F.J., Hackermüller, J., Hoffmann, S., Pörtner, H.-O., Luckenbach, T., Timofeyev, M., Stadler, P.F. (2019): Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods BMC Genomics 20 , art. 712 full text (doi) |
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18629 | Ebenau-Jehle, C., Mergelsberg, M., Fischer, S., Brüls, T., Jehmlich, N., von Bergen, M., Boll, M. (2017): An unusual strategy for the anoxic biodegradation of phthalate ISME J. 11 (1), 224 - 236 full text (doi) |
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17204 | Els-Heindl, S., Kostelnik, K.B., Klöting, N., Baumann, S., von Bergen, M., Beck-Sickinger, A.G. (2016): A palmitoylated ghrelin receptor ligand shows high metabolic invivo stability and bioavailability Neuropeptides 55 , 1 - 12 full text (doi) |
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21613 | Engel, K.M., Baumann, S., Rolle-Kampczyk, U., Schiller, J., von Bergen, M., Grunewald, S. (2019): Metabolomic profiling reveals correlations between spermiogram parameters and the metabolites present in human spermatozoa and seminal plasma PLOS One 14 (2), e0211679 full text (doi) |