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12928 Abburi, R., Kalkhof, S., Oehme, R., Kiontke, A., Birkemeyer, C. (2012):
Artifacts in amine analysis from anodic oxidation of organic solvents upon electrospray ionization for mass spectrometry
Eur. J. Mass Spectrom. 18 (3), 301 - 312
full text (doi)
16149 Ahrens, V.M., Kostelnik, K.B., Rennert, R., Böhme, D., Kalkhof, S., Kosel, D., Weber, L., von Bergen, M., Beck-Sickinger, A.G. (2015):
A cleavable cytolysin–neuropeptide Y bioconjugate enables specific drug delivery and demonstrates intracellular mode of action
J. Control. Release 209 , 170 - 178
full text (doi)
738 Andronesi, O.C., von Bergen, M., Biernat, J., Seidel, K., Griesinger, C., Mandelkow, E., Baldus, M. (2008):
Characterization of Alzheimer's-like paired helical filaments from the core domain of tau protein using solid-state NMR spectroscopy
J. Am. Chem. Soc. 130 (18), 5922 - 5928
full text (doi)
1611 Anh, D.H., Ullrich, R., Benndorf, D., Svatos, A., Muck, A., Hofrichter, M. (2007):
The coprophilous mushroom Coprinus radians secretes a haloperoxidase that catalyzes aromatic peroxygenation
Appl. Environ. Microb. 73 (17), 5477 - 5485
full text (doi)
15362 Arnold, C., Externbrink, F., Hackermüller, J., Reiche, K. (2014):
CEM-Designer: design of custom expression microarrays in the post-ENCODE era
J. Biotechnol. 189 , 154 - 156
full text (doi)
760 Balcke, G.U., Wegener, S., Kiesel, B., Benndorf, D., Schlömann, M., Vogt, C. (2008):
Kinetics of chlorobenzene biodegradation under reduced oxygen levels
Biodegradation 19 (4), 507 - 518
full text (doi)
5340 Barghorn, S., von Bergen, M., Li, L., Biernat, J., Mandelkow, E.-M., Mandelkow, E. (2002):
Some mutations of tau protein in frontotemporal dementia (FTDP-17) promote aggregation of paired helical filaments by enhancing local beta structure
Neurobiol. Aging 23 (Suppl. 1), S528
full text (doi)
6982 Barghorn, S., Zheng-Fischhofer, Q., Ackmann, M., Biernat, J., von Bergen, M., Mandelkow, E.-M., Mandelkow, E. (2000):
Structure, microtubule interactions, and paired helical filament aggregation by tau mutants of frontotemporal dementias
Biochemistry 39 (38), 11714 - 11721
full text (doi)
16759 Bargiela, R., Herbst, F.-A., Martínez-Martínez, M., Seifert, J., Rojo, D., Cappello, S., Genovese, M., Crisafi, F., Denaro, R., Chernikova, T.N., Barbas, C., von Bergen, M., Yakimov, M.M., Ferrer, M., Golyshin, P.N. (2015):
Metaproteomics and metabolomics analyses of chronically petroleum-polluted sites reveal the importance of general anaerobic processes uncoupled with degradation
Proteomics 15 (20), 3508 - 3520
full text (doi)
16253 Bastida, F., García, C., von Bergen, M., Moreno, J.L., Richnow, H.H., Jehmlich, N. (2015):
Deforestation fosters bacterial diversity and the cyanobacterial community responsible for carbon fixation processes under semiarid climate: a metaproteomics study
Appl. Soil Ecol. 93 , 65 - 67
full text (doi)
11150 Bastida, F., Jechalke, S., Bombach, P., Franchini, A.G., Seifert, J., von Bergen, M., Vogt, C., Richnow, H.H. (2011):
Assimilation of benzene carbon through multiple trophic levels traced by different stable isotope probing methodologies
FEMS Microbiol. Ecol. 77 (2), 357 - 369
full text (doi)
15233 Bastida, F., Jehmlich, N., Ondoño, S., von Bergen, M., García, C., Moreno, J.L. (2014):
Characterization of the microbial community in biological soil crusts dominated by Fulgensia desertorum (Tomin) Poelt and Squamarina cartilaginea (With.) P. James and in the underlying soil
Soil Biol. Biochem. 76 , 70 - 79
full text (doi)
9775 Bastida, F., Rosell, M., Franchini, A.G., Seifert, J., Finsterbusch, S., Jehmlich, N., Jechalke, S., von Bergen, M., Richnow, H.H. (2010):
Elucidating MTBE degradation in a mixed consortium using a multidisciplinary approach
FEMS Microbiol. Ecol. 73 (2), 370 - 384
full text (doi)
13236 Baumann, S., Kalkhof, S., Hackermüller, J., Otto, W., Tomm, J.M., Wissenbach, D.K., Rolle-Kampczyk, U., von Bergen, M. (2013):
Requirements and perspectives for integrating metabolomics with other omics data
Current Metabolomics 1 (1), 15 - 27
full text (doi)
14619 Baumann, S., Rockstroh, M., Bartel, J., Krumsiek, J., Otto, W., Jungnickel, H., Potratz, S., Luch, A., Wilscher, E., Theis, F.J., von Bergen, M., Tomm, J.M. (2014):
Subtoxic concentrations of benzo[a]pyrene induce metabolic changes and oxidative stress in non-activated and affect the mTOR pathway in activated Jurkat T cells
Journal of Integrated OMICS 4 (1), 11 - 20
full text (doi)
12590 Baumgarten, T., Sperling, S., Seifert, J., von Bergen, M., Steiniger, F., Wick, L.Y., Heipieper, H.J. (2012):
Membrane vesicle formation as a multiple-stress response mechanism enhances Pseudomonas putida DOT-T1E cell surface hydrophobicity and biofilm formation
Appl. Environ. Microb. 78 (17), 6217 - 6224
full text (doi)
5352 Benndorf, D. (2002):
Bewältigung von Chemostress durch Detoxifizierung
Ehrenkolloquium anlässlich des 65. Geburtstages von Prof. Dr. habil. Wolfgang Babel, Leipzig, 18.7.2002
19586 Benndorf, D. (Hrsg., 2000):
Molekulare Mechanismen der Resistenz von Bakterien gegenüber Xenobiotika
UFZ-Bericht 22/2000
UFZ Leipzig-Halle GmbH, Leipzig, 95 S.
6990 Benndorf, D. (2000):
Molekulare Mechanismen der Resistenz von Bakterien gegenüber Xenobiotika am Beispiel von Acinetobacter calcoaceticus 69-V
Wissenschaftliches Kolloquium am UFZ Leipzig, Sektion Umweltmikrobiologie, Leipzig, 22.2.2000
5351 Benndorf, D., Babel, W. (2002):
Assimilatory detoxification of herbicides by Delftia acidovorans MC1: Induction of two chlorocatechol 1,2-dioxygenases as response to chemostress
Microbiology-(UK) 148 (9), 2883 - 2888
full text (doi)
1647 Benndorf, D., Balcke, G.U., Harms, H., von Bergen, M. (2007):
Functional metaproteome analysis of protein extracts from contaminated soil and groundwater
ISME J. 1 (3), 224 - 234
full text (doi)
3971 Benndorf, D., Davidson, I., Babel, W. (2004):
Regulation of catabolic enzymes during long-term exposure of Delftia acidovorans MC1 to chlorophenoxy herbicides
Microbiology-(UK) 150 (4), 1005 - 1014
full text (doi)
9151 Benndorf, D., Loffhagen, N., Babel, W. (1997):
Chemicals and heat generate different protein patterns in Acinetobacter calcoaceticus
J. Basic Microbiol. 37 (3), 167 - 174
full text (doi)
7837 Benndorf, D., Loffhagen, N., Babel, W. (1999):
Induction of heat shock proteins in response to primary alcohols in Acinetobacter calcoaceticus
Electrophoresis 20 (4-5), 781 - 789
full text (doi)
6202 Benndorf, D., Loffhagen, N., Babel, W. (2001):
Protein synthesis patterns in Acinetobacter calcoaceticus induced by phenol and catechol show specificities of responses to chemostress
FEMS Microbiol. Lett. 200 (2), 247 - 252
full text (doi)
3970 Benndorf, D., Loffhagen, N., Härtig, C., Babel, W. (2004):
Growth on phenol at chemostress levels amplifies the expression of the phenol degradation pathway in Acinetobacter calcoaceticus
Eng. Life Sci. 4 (1), 38 - 42
full text (doi)
791 Benndorf, D., Müller, A., Bock, K., Manuwald, O., Herbarth, O., von Bergen, M. (2008):
Identification of spore allergens from the indoor mould Aspergillus versicolor
Allergy 63 (4), 454 - 460
full text (doi)
2496 Benndorf, D., Thiersch, M., Loffhagen, N., Kunath, C., Harms, H. (2006):
Pseudomonas putida KT2440 responds specifically to chlorophenoxy herbicides and their initial metabolites
Proteomics 6 (11), 3319 - 3329
full text (doi)
55 Benndorf, D., Vogt, C., Jehmlich, N., Schmidt, Y., Thomas, H., Woffendin, G., Shevchenko, A., Richnow, H.-H., von Bergen, M. (2009):
Improving protein extraction and separation methods for investigating the metaproteome of anaerobic benzene communities within sediments
Biodegradation 20 (6), 737 - 750
full text (doi)
11288 Berger, K., Wissmann, D., Ihling, C., Kalkhof, S., Beck-Sickinger, A., Sinz, A., Paschke, R., Führer, D. (2004):
Quantitative proteome analysis in benign thyroid nodular disease using the fluorescent ruthenium II tris(bathophenanthroline disulfonate) stain
Mol. Cell. Endocrinol. 227 (1-2), 21 - 30
full text (doi)
16640 Beyer, A., Baumann, S., Scherz, G., Stahl, J., von Bergen, M., Friese, A., Roesler, U., Kietzmann, M., Honscha, W. (2015):
Effects of ceftiofur treatment on the susceptibility of commensal porcine E.coli – comparison between treated and untreated animals housed in the same stable
BMC Vet. Res. 11 , art. 265
full text (doi)
9800 Binder, H., Wirth, H., Galle, J. (2010):
Gene expression density profiles characterize modes of genomic regulation: theory and experiment
J. Biotechnol. 149 (3), 98 - 114
full text (doi)
12118 Blaschke, U., Eismann, K., Böhme, A., Paschke, A., Schüürmann, G. (2012):
Structural alerts for the excess toxicity of acrylates, methacrylates, and propiolates derived from their short-term and long-term bacterial toxicity
Chem. Res. Toxicol. 25 (1), 170 - 180
full text (doi)
14058 Blumert, C., Kalkhof, S., Brocke-Heidrich, K., Kohajda, T., von Bergen, M., Horn, F. (2013):
Analysis of the STAT3 interactome using in-situ biotinylation and SILAC
J. Proteomics 94 , 370 - 386
full text (doi)
814 Bock, K., Benndorf, D., Müller, A., Bauer, M., von Bergen, M. (2008):
Identification of allergens from the indoor mold Aspergillus versicolor
Allergy 63 (Suppl. 88), 530 - 531
full text (doi)
14195 Bodelier, P.L.E., Meima-Franke, M., Hordijk, C.A., Steenbergh, A.K., Hefting, M.E., Bodrossy, L., von Bergen, M., Seifert, J. (2013):
Microbial minorities modulate methane consumption through niche partitioning
ISME J. 7 (11), 2214 - 2228
full text (doi)
12164 Boll, K., Reiche, K., Kasack, K., Mörbt, N., Kretzschmar, A.K., Tomm, J.M., Verhaegh, G., Schalken, J., von Bergen, M., Horn, F., Hackermüller, J. (2013):
MiR-130a, miR-203 and miR-205 jointly repress key oncogenic pathways and are downregulated in prostate carcinoma
Oncogene 32 , 277 - 285
full text (doi)
12572 Bönisch, U., Böhme, A., Kohajda, T., Mögel, I., Schütze, N., von Bergen, M., Simon, J.C., Lehmann, I., Polte, T. (2012):
Volatile organic compounds enhance allergic airway inflammation in an experimental mouse model
PLoS One 7 (7), e39817
full text (doi)
12361 Bozinovski, D., Herrmann, S., Richnow, H.-H., von Bergen, M., Seifert, J., Vogt, C. (2012):
Functional analysis of an anaerobic m-xylene-degrading enrichment culture using protein-based stable isotope probing
FEMS Microbiol. Ecol. 81 (1), 134 - 144
full text (doi)
15214 Bozinovski, D., Taubert, M., Kleinsteuber, S., Richnow, H.-H., von Bergen, M., Vogt, C., Seifert, J. (2014):
Metaproteogenomic analysis of a sulfate-reducing enrichment culture reveals genomic organization of key enzymes in the m-xylene degradation pathway and metabolic activity of proteobacteria
Syst. Appl. Microbiol. 37 (7), 488 - 501
full text (doi)
17176 Brückner, S., Tautenhahn, H.-M., Baumann, S., Winkler, S., Bartels, M., von Bergen, M., Christ, B. (2015):
Mesenchymal stem cells (MSC) prevent liver failure after huge liver resection in rat
Transplantation 99 (7S), 267
full text (doi)
9838 Bruegel, M., Planert, M., Baumann, S., Focke, A., Bergh, F.T., Leichtle, A., Ceglarek, U., Thiery, J., Fiedler, G.M. (2009):
Standardized peptidome profiling of human cerebrospinal fluid by magnetic bead separation and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
J. Proteomics 72 (4), 608 - 615
full text (doi)
119 Cianni, N., Müller, A., Lespade, P., Aguilar, M., Matamoros, N., Colman, E., Martin, M., Chiapperini, V., Bussi, L., Massolo, L., Wichmann, F., Porta, A. (2009):
Calidad del aire y salud infantil en áreas urbanas e industriales de La Plata y Ensenada, Argentina
In: Puliafito, S.E., Quaranta, N. (eds.)
Contaminación atmosférica en Argentina: contribuciones de la II Reunión Anual PROIMCA
Universidad Tecnológica Nacional, Mendoza, p. 37 - 44
14804 Colman Lerner, J.E., Kohajda, T., Aguilar, M.E., Massolo, L.A., Sánchez, E.Y., Porta, A.A., Opitz, P., Wichmann, G., Herbarth, O., Mueller, A. (2014):
Improvement of health risk factors after reduction of VOC concentrations in industrial and urban areas
Environ. Sci. Pollut. Res. 21 (16), 9676 - 9688
full text (doi)
16969 Daims, H., Lebedeva, E.V., Pjevac, P., Han, P., Herbold, C., Albertsen, M., Jehmlich, N., Palatinszky, M., Vierheilig, J., Bulaev, A., Kirkegaard, R.H., von Bergen, M., Rattei, T., Bendinger, B., Nielsen, P.H., Wagner, M. (2015):
Complete nitrification by Nitrospira bacteria
Nature 528 (7583), 504 - 509
full text (doi)
10735 Dautel, F., Kalkhof, S., Trump, S., Lehmann, I., Beyer, A., von Bergen, M. (2011):
Large-scale 2-D DIGE studies - guidelines to overcome pitfalls and challenges along the experimental procedure
Journal of Integrated OMICS 1 (1), 170 - 179
full text (doi)
10734 Dautel, F., Kalkhof, S., Trump, S., Michaelson, J., Beyer, A., Lehmann, I., von Bergen, M. (2011):
DIGE-based protein expression analysis of B[a]P-exposed hepatoma cells reveals a complex stress response including alterations in oxidative stress, cell cycle control, and cytoskeleton motility at toxic and subacute concentrations
J. Proteome Res. 10 (2), 379 - 393
full text (doi)
11516 Dietrich, A., Blüher, M., Jonas, S., Shang, E., Till, H., von Bergen, M., Oberbach, A. (2011):
Metabolic effects of sleeve gastrectomy on different serum proteins
Obes. Surg. 21 (8), 1064 - 1064
full text (doi)
11882 Diez, U., Müller, A. (2011):
Einfluss der Schimmelpilzbelastung in Wohnungen auf die Gesundheit
Pädiatrische Allergologie in Klinik und Praxis 14 (2), 40 - 42
full text (url)
11290 Dimova, K., Kalkhof, S., Pottratz, I., Ihling, C., Rodriguez-Castaneda, F., Liepold, T., Griesinger, C., Brose, N., Sinz, A., Jahn, O. (2009):
Structural insights into the calmodulin-Munc13 interaction obtained by cross-linking and mass spectrometry
Biochemistry 48 (2), 5908 - 5921
full text (doi)
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