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ID Publikation
15719 Hoeke, H., Roeder, S., Bertsche, T., Lehmann, I., Borte, M., von Bergen, M., Wissenbach, D.K. (2015):
Monitoring of drug intake during pregnancy by questionnaires and LC-MS/MS drug urine screening: evaluation of both monitoring methods
Drug Test. Anal. 7 (8), 695 - 702
Volltext (DOI)
14689 Hoffmann, S., Otto, C., Doose, G., Tanzer, A., Langenberger, D., Christ, S., Kunz, M., Holdt, L.M., Teupser, D., Hackermüller, J., Stadler, P.F. (2014):
A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection
Genome Biol. 15 (2), R34
Volltext (DOI)
16181 Hofmann, T., Fischer, A.W., Meiler, J., Kalkhof, S. (2015):
Protein structure prediction guided by crosslinking restraints – A systematic evaluation of the impact of the crosslinking spacer length
Methods 89 , 79 - 90
Volltext (DOI)
16088 Hofmann, T., Samsonov, S.A., Pichert, A., Lemmnitzer, K., Schiller, J., Huster, D., Pisabarro, M.T., von Bergen, M., Kalkhof, S. (2015):
Structural analysis of the interleukin-8/glycosaminoglycan interactions by amide hydrogen/deuterium exchange mass spectrometry
Methods 89 , 45 - 53
Volltext (DOI)
13152 Hörnig, F., Weisse, K., Röder, S., Kohajda, T., von Bergen-Tomm, M., Borte, M., Diez, U., Simon, J., Denburg, J., Lehmann, I. (2012):
Infantile eosinophil/basophil progenitors are more sensitive to indoor chemical exposures compared to their mothers
Allergy 67 (Suppl. 96), 574 - 574
Volltext (DOI)
11731 Hösler, N., Hackermüller, J., Reiche, K., Horn, F. (2011):
Identification of ncRNAs regulating differencoation and function of CD4+ T cells. PS2-061
Cytokine 56 (1), 81 - 81
Volltext (DOI)
15877 Hoth, N., Gniese, C., Rakoczy, J., Weber, A., Kümmel, S., Reichel, S., Freese, C., Hache, M., Kassahun, A., Schulz, A., Fischer, H., Mühling, M., Starke, R., Kahnt, R., Vogt, C., Richnow, H.-H., Krüger, M., Schippers, A., Schlömann, M. (2015):
CO2BioPerm — influence of bio-geochemical CO2-transformation processes on the long-term permeability
In: Liebscher, A., Münch, U. (eds.)
Geological Storage of CO2 – Long Term Security Aspects. GEOTECHNOLOGIEN Science Report No. 22
Advanced Technologies in Earth Sciences
Springer, Berlin, Heidelberg, p. 73 - 96
Volltext (DOI)
2734 Ihling, C., Schmidt, A., Kalkhof, S., Schulz, D.M., Stingl, C., Mechtler, K., Haack, M., Beck-Sickinger, A.G., Cooper, D.M.F., Sinz, A. (2006):
Isotope-labeled cross-linkers and Fourier transform ion cyclotron resonance mass spectrometry for structural analysis of a protein/peptide complex
J. Am. Soc. Mass Spectrom. 17 (8), 1100 - 1113
Volltext (DOI)
14899 Imhasly, S., Naegeli, H., Baumann, S., von Bergen, M., Luch, A., Jungnickel, H., Potratz, S., Gerspach, C. (2014):
Metabolomic biomarkers correlating with hepatic lipidosis in dairy cows
BMC Vet. Res. 10 , art. 122
Volltext (DOI)
15201 Jahn, M., Seifert, J., Hübschmann, T., von Bergen, M., Harms, H., Müller, S. (2013):
Comparison of preservation methods for bacterial cells in cytomics and proteomics
Journal of Integrated OMICS 3 (1), 25 - 33
Volltext (DOI)
13116 Jahn, M., Seifert, J., von Bergen, M., Schmid, A., Bühler, B., Müller, S. (2013):
Subpopulation-proteomics in prokaryotic populations
Curr. Opin. Biotechnol. 24 (1), 79 - 87
Volltext (DOI)
13519 Jechalke, S., Franchini, A., Bastida, F., Bombach, P., Rosell, M., Seifert, J., von Bergen, M., Vogt, C., Richnow, H.H. (2013):
Analysis of structure, function, and activity of a benzene-degrading microbial community
FEMS Microbiol. Ecol. 85 (1), 14 - 26
Volltext (DOI)
2742 Jeganathan, S., von Bergen, M., Brutlach, H., Steinhoff, H.J., Mandelkow, E. (2006):
Global hairpin folding of tau in solution
Biochemistry 45 (7), 2283 - 2293
Volltext (DOI)
1060 Jeganathan, S., von Bergen, M., Mandelkow, E. (2008):
In search for the pathological conformation of tau protein
Eur. J. Cell Biol. 87 (Suppl. 1), 49
Volltext (DOI)
1061 Jeganathan, S., von Bergen, M., Mandelkow, E.-M., Mandelkow, E. (2008):
The natively unfolded character of tau and its aggregation to Alzheimer-like paired helical filaments
Biochemistry 47 (40), 10526 - 10539
Volltext (DOI)
10121 Jehmlich, N., Fetzer, I., Seifert, J., Mattow, J., Vogt, C., Harms, H., Thiede, B., Richnow, H.H., von Bergen, M., Schmidt, F. (2010):
Decimal place slope: a fast and precise method for quantifying 13C incorporation levels for detecting the metabolic activity of microbial species
Mol. Cell. Proteomics 9 (6), 1221 - 1227
Volltext (DOI)
10123 Jehmlich, N., Hübschmann, T., Gesell Salazar, M., Völker, U., Benndorf, D., Müller, S., von Bergen, M., Schmidt, F. (2010):
Advanced tool for characterization of microbial cultures by combining cytomics and proteomics
Appl. Microbiol. Biotechnol. 88 (2), 575 - 584
Volltext (DOI)
10122 Jehmlich, N., Kleinsteuber, S., Vogt, C., Benndorf, D., Harms, H., Schmidt, F., von Bergen, M., Seifert, J. (2010):
Phylogenetic and proteomic analysis of an anaerobic toluene-degrading community
J. Appl. Microbiol. 109 (6), 1937 - 1945
Volltext (DOI)
12053 Jehmlich, N., Kopinke, F.-D., Lenhard, S., Vogt, C., Herbst, F.-A., Seifert, J., Lissner, U., Völker, U., Schmidt, F., von Bergen, M. (2012):
Sulfur-36S stable isotope labeling of amino acids for quantification (SULAQ)
Proteomics 12 (1), 37 - 42
Volltext (DOI)
1062 Jehmlich, N., Schmidt, F., Hartwich, M., von Bergen, M., Richnow, H.H., Vogt, C. (2008):
Incorporation of carbon and nitrogen atoms into proteins measured by protein-based stable isotope probing (Protein-SIP)
Rapid Commun. Mass Spectrom. 22 (18), 2889 - 2897
Volltext (DOI)
10124 Jehmlich, N., Schmidt, F., Taubert, M., Seifert, J., Bastida, F., von Bergen, M., Richnow, H.-H., Vogt, C. (2010):
Protein-based stable isotope probing
Nat. Protoc. 5 (12), 1957 - 1966
Volltext (DOI)
294 Jehmlich, N., Schmidt, F., Taubert, M., Seifert, J., von Bergen, M., Richnow, H.-H., Vogt, C. (2009):
Comparison of methods for simultaneous identification of bacterial species and determination of metabolic activity by protein-based stable isotope probing (Protein-SIP) experiments
Rapid Commun. Mass Spectrom. 23 (12), 1871 - 1878
Volltext (DOI)
1063 Jehmlich, N., Schmidt, F., von Bergen, M., Richnow, H.H., Vogt, C. (2008):
Protein-based stable isotope probing (Protein-SIP) reveals active species within anoxic mixed cultures
ISME J. 2 (11), 1122 - 1133
Volltext (DOI)
12068 Jehmlich, N., Seifert, J., Taubert, M., Schmidt, F., Vogt, C., Richnow, H.H., von Bergen, M. (2011):
Protein stable isotope probing
In: Murrell, J.C., Whiteley, A.S. (eds.)
Stable isotope probing and related technologies
ASM Press, Washington, DC, p. 71 - 93
1066 Johannes, J., Bluschke, A., Jehmlich, N., von Bergen, M., Boll, M. (2008):
Purification and characterization of active-site components of the putative p-cresol methylhydroxylase membrane complex from Geobacter metallireducens
J. Bacteriol. 190 (19), 6493 - 6500
Volltext (DOI)
15706 Jouy, F., Müller, S.A., Wagner, J., Otto, W., von Bergen, M., Tomm, J.M. (2015):
Integration of conventional quantitative and phospho-proteomics reveals new elements in activated Jurkat T-cell receptor pathway maintenance
Proteomics 15 (1), 25 - 33
Volltext (DOI)
15252 Jungandreas, A., Schellenberger Costa, B., Jakob, T., von Bergen, M., Baumann, S., Wilhelm, C. (2014):
The acclimation of Phaeodactylum tricornutum to blue and red light does not influence the photosynthetic light reaction but strongly disturbs the carbon allocation pattern
PLOS One 9 (8), e99727
Volltext (DOI)
14679 Junge, K.M., Hörnig, F., Herberth, G., Röder, S., Kohajda, T., Rolle-Kampczyk, U., von Bergen, M., Borte, M., Simon, J.-C., Heroux, D., Denburg, J.A., Lehmann, I. (2014):
The LINA cohort: cord blood eosinophil/basophil progenitors predict respiratory outcomes in early infancy
Clin. Immunol. 152 (1-2), 68 - 76
Volltext (DOI)
298 Junghanns, C., Pecyna, M.J., Böhm, D., Jehmlich, N., Martin, C., von Bergen, M., Schauer, F., Hofrichter, M., Schlosser, D. (2009):
Biochemical and molecular genetic characterisation of a novel laccase produced by the aquatic ascomycete Phoma sp. UHH 5-1-03
Appl. Microbiol. Biotechnol. 84 (6), 1095 - 1105
Volltext (DOI)
15091 Jungnickel, H., Luch, A., Potratz, S., von Bergen, M., Baumann, S., Tarnow, P. (2014):
Identification of lipidomic biomarkers for coexposure to subtoxic doses of benzo[a]pyrene and cadmium: the toxicological cascade biomarker approach
Environ. Sci. Technol. 48 (17), 10423 - 10431
Volltext (DOI)
15476 Kalkhof, S., Dautel, F., Loguercio, S., Baumann, S., Trump, S., Jungnickel, H., Otto, W., Rudzok, S., Potratz, S., Luch, A., Lehmann, I., Beyer, A., von Bergen, M. (2015):
Pathway and time-resolved benzo[a]pyrene toxicity on Hepa1c1c7 cells at toxic and subtoxic exposure
J. Proteome Res. 14 (1), 164 - 182
Volltext (DOI)
15088 Kalkhof, S., Förster, Y., Schmidt, J., Schulz, M.C., Baumann, S., Weißflog, A., Gao, W., Hempel, U., Eckelt, U., Rammelt, S., von Bergen, M. (2014):
Proteomics and metabolomics for in situ monitoring of wound healing
Biomed Res. Int. 2014 , art. 934848
Volltext (DOI)
1084 Kalkhof, S., Haehn, S., Ihling, C., Paulsson, M., Smyth, N., Sinz, A. (2008):
Determination of disulfide bond patterns in laminin β1 chain N-terminal domains by nano-high-performance liquid chromatography/matrix-assisted laser desorption/ionization time-of-flight/time-of-flight mass spectrometry
Rapid Commun. Mass Spectrom. 22 (12), 1933 - 1940
Volltext (DOI)
10136 Kalkhof, S., Haehn, S., Paulsson, M., Smyth, N., Meiler, J., Sinz, A. (2010):
Computational modeling of laminin N-terminal domains using sparse distance constraints from disulfide bonds and chemical cross-linking
Proteins 78 (16), 3409 - 3427
Volltext (DOI)
3491 Kalkhof, S., Ihling, C., Mechtler, K., Sinz, A. (2005):
Chemical cross-linking and high-performance Fourier transform ion cyclotron resonance mass spectrometry for protein interaction analysis: Application to a calmodulin/target peptide complex
Anal. Chem. 77 (2), 495 - 503
Volltext (DOI)
1083 Kalkhof, S., Sinz, A. (2008):
Chances and pitfalls of chemical cross-linking with amine-reactive N-hydroxysuccinimide esters
Anal. Bioanal. Chem. 392 (1-2), 305 - 312
Volltext (DOI)
10135 Kalkhof, S., Witte, K., Ihling, C.H., Müller, M.Q., Keller, M.V., Haehn, S., Smyth, N., Paulsson, M., Sinz, A. (2010):
A novel disulfide pattern in laminin-type epidermal growth factor-like (LE) modules of laminin β1 and γ1 chains
Biochemistry 49 (38), 8359 - 8366
Volltext (DOI)
16874 Keller, A.H., Schleinitz, K.M., Starke, R., Bertilsson, S., Vogt, C., Kleinsteuber, S. (2015):
Metagenome-based metabolic reconstruction revealsthe ecophysiological function of Epsilonproteobacteria in a hydrocarbon-contaminated sulfidic aquifer
Front. Microbiol. 6 , art. 1396
Volltext (DOI)
1922 Kellner, H., Jehmlich, N., Benndorf, D., Hoffmann, R., Rühl, M., Hoegger, P.J., Majcherczyk, A., Kües, U., von Bergen, M., Buscot, F. (2007):
Detection, quantification and identification of fungal extracellular laccases using polyclonal antibody and mass spectrometry
Enzyme Microb. Technol. 41 (6-7), 694 - 701
Volltext (DOI)
12766 Kermer, R., Hedrich, S., Taubert, M., Baumann, S., Schlömann, M., Johnson, D.B., Seifert, J. (2012):
Elucidation of carbon transfer in a mixed culture of Acidiphilium cryptum and Acidithiobacillus ferrooxidans using protein-based stable isotope probing
Journal of Integrated OMICS 2 (1), 37 - 45
Volltext (DOI)
12152 Kespohl, S., Kotschy-Lang, N., Tomm, J.M., von Bergen, M., Maryska, S., Brüning, T., Raulf-Heimsoth, M. (2012):
Occupational IgE-mediated softwood allergy: characterization of the causative allergen
Int. Arch. Allergy Immunol. 157 (2), 202 - 208
Volltext (DOI)
2769 Khlistunova, I., Biernat, J., Wang, Y.P., Pickhardt, M., von Bergen, M., Gazova, Z., Mandelkow, E., Mandelkow, E.-M. (2006):
Inducible expression of tau repeat domain in cell models of tauopathy - Aggregation is toxic to cells but can be reversed by inhibitor drugs
J. Biol. Chem. 281 (2), 1205 - 1214
Volltext (DOI)
16196 Kirsten, H., Al-Hasani, H., Holdt, L., Gross, A., Beutner, F., Krohn, K., Ahnert, P., Burkhardt, R., Reiche, K., Hackermüller, J., Löffler, M., Teupser, D., Thiery, J., Scholz, M. (2015):
Dissecting the genetics of the human transcriptome identifies novel trait-related trans-eQTLs and corroborates the regulatory relevance of non-protein coding loci
Hum. Mol. Genet. 24 (16), 4746 - 4763
Volltext (DOI)
15433 Kleindienst, S., Herbst, F.-A., Stagars, M., von Netzer, F., von Bergen, M., Seifert, J., Peplies, J., Amann, R., Musat, F., Lueders, T., Knittel, K. (2014):
Diverse sulfate-reducing bacteria of the Desulfosarcina/Desulfococcus clade are the key alkane degraders at marine seeps
ISME J. 8 (10), 2029 - 2044
Volltext (DOI)
13114 Kliemt, S., Lange, C., Otto, W., Hintze, V., Möller, S., von Bergen, M., Hempel, U., Kalkhof, S. (2013):
Sulfated hyaluronan containing collagen matrices enhance cell-matrix-interaction, endocytosis, and osteogenic differentiation of human mesenchymal stromal cells
J. Proteome Res. 12 (1), 378 - 389
Volltext (DOI)
16888 Klöting, N., Hesselbarth, N., Gericke, M., Kunath, A., Biemann, R., Chakaroun, R., Kosacka, J., Kovacs, P., Kern, M., Stumvoll, M., Fischer, B., Rolle-Kampczyk, U., Feltens, R., Otto, W., Wissenbach, D.K., von Bergen, M., Blüher, M. (2015):
Di-(2-ethylhexyl)-phthalate (DEHP) causes impaired adipocyte function and alters serum metabolites
PLOS One 10 (12), e0143190
Volltext (DOI)
15632 Kostelnik, K.B., Els-Heindl, S., Klöting, N., Baumann, S., von Bergen, M., Beck-Sickinger, A.G. (2015):
High metabolic in vivo stability and bioavailability of a palmitoylated ghrelin receptor ligand assessed by mass spectrometry
Bioorg. Med. Chem. 23 (14), 3925 - 3932
Volltext (DOI)
5004 Krayl, M., Benndorf, D., Loffhagen, N., Babel, W. (2003):
Use of proteomics and physiological characteristics to elucidate ecotoxic effects of methyl tert-butyl ether in Pseudomonas putida KT2440
Proteomics 3 (8), 1544 - 1552
Volltext (DOI)
16113 Kümmel, S., Herbst, F.-A., Bahr, A., Duarte, M., Pieper, D.H., Jehmlich, N., Seifert, J., von Bergen, M., Bombach, P., Richnow, H.H., Vogt, C. (2015):
Anaerobic naphthalene degradation by sulfate-reducing Desulfobacteraceae from various anoxic aquifers
FEMS Microbiol. Ecol. 91 (3), fiv006
Volltext (DOI)
10219 Kung, J.W., Baumann, S., von Bergen, M., Müller, M., Hagedoorn, P.-L., Hagen, W.R., Boll, M. (2010):
Reversible biological Birch reduction at an extremely low redox potential
J. Am. Chem. Soc. 132 (28), 9850 - 9856
Volltext (DOI)
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