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Publications

Die hier gelisteten Publikationen sind in dem im Mai 2006 gegründeten Department Proteomics entstanden. Sonstige Publikationen, an denen Mitarbeiter des Departments beteiligt waren, sind auf den individuellen Webseiten aufgeführt.

Publikationen 2011

• Bastida, F., Jechalke, S., Bombach, P., Franchini, A. G., Seifert, J., von Bergen, M., Vogt, C., and Richnow, H. H. (2011):
  Assimilation of benzene carbon through multiple trophic levels traced by different stable isotope probing methodologies
  FEMS Microbiology Ecology 77, 357-369
  http://dx.doi.org/10.1111/j.1574-6941.2011.01118.x
• Dautel, F., Kalkhof, S., Trump, S., Michaelson, J., Beyer, A., Lehmann, I., and von Bergen, M. (2011):
  DIGE-based protein expression analysis of B[a]P-exposed hepatoma cells reveals a complex stress response including alterations in oxidative stress, cell cycle control, and cytoskeleton motility at toxic and subacute concentrations
  J Proteome Res 10, 379-393
  http://dx.doi.org/10.1021/pr100723d [doi]
• Georgieva, D., Seifert, J., Öhler, M., von Bergen, M., Spencer, P., Arni, R. K., Genov, N., and Betzel, C. (2011):
  Pseudechis australis Venomics: Adaptation for a Defense against Microbial Pathogens and Recruitment of Body Transferrin
  Journal of Proteome Research 10, 2440-2464
  http://dx.doi.org/10.1021/pr101248e
• Hedrich, S., Lunsdorf, H., Kleeberg, R., Heide, G., Seifert, J., and Schlomann, M. (2011):
  Schwertmannite Formation Adjacent to Bacterial Cells in a Mine Water Treatment Plant and in Pure Cultures of Ferrovum myxofaciens
  Environ Sci Technol 45, 7685-7692
  http://dx.doi.org/10.1021/es201564g [doi]
• Marco-Urrea, E., Paul, S., Khodaverdi, V., Seifert, J., von Bergen, M., Kretzschmar, U., and Adrian, L. (2011):
  Identification and Characterization of a Re-Citrate Synthase in Dehalococcoides Strain CBDB1
  J. Bacteriol. 193, 5171-5178
  http://dx.doi.org/10.1128/jb.05120-11
• Mögel, I., Baumann, S., Böhme, A., Kohajda, T., von Bergen, M., Simon, J.-C., and Lehmann, I. (2011):
  The aromatic volatile organic compounds toluene, benzene and styrene induce COX-2 and prostaglandins in human lung epithelial cells via oxidative stress and p38 MAPK activation
  Toxicology 289, 28-37
  
• Morbt, N., Tomm, J., Feltens, R., Mogel, I., Kalkhof, S., Murugesan, K., Wirth, H., Vogt, C., Binder, H., Lehmann, I., and von Bergen, M. (2011):
  Chlorinated benzenes cause concomitantly oxidative stress and induction of apoptotic markers in lung epithelial cells (A549) at nonacute toxic concentrations
  J Proteome Res 10, 363-378
  http://dx.doi.org/10.1021/pr1005718 [doi]
• Oberbach, A., Blüher, M., Wirth, H., Till, H., Kovacs, P., Kullnick, Y., Schlichting, N., Tomm, J. M., Rolle-Kampczyk, U., Murugaiyan, J., Binder, H., Dietrich, A., and von Bergen, M. (2011):
  Combined Proteomic and Metabolomic Profiling of Serum Reveals Association of the Complement System with Obesity and Identifies Novel Markers of Body Fat Mass Changes
  Journal of Proteome Research, http://dx.doi.org/10.1021/pr2005555
• Schramedei, K., Morbt, N., Pfeifer, G., Lauter, J., Rosolowski, M., Tomm, J. M., von Bergen, M., Horn, F., and Brocke-Heidrich, K. (2011):
  MicroRNA-21 targets tumor suppressor genes ANP32A and SMARCA4
  Oncogene 30, 2975-2985
  http://dx.doi.org/onc201115 [pii] 10.1038/onc.2011.15 [doi]
• Taubert, M., Baumann, S., von Bergen, M., and Seifert, J. (2011):
  Exploring the limits of robust detection of incorporation of ¹³C by mass spectrometry in protein-based stable isotope probing (protein-SIP)
  Analytical and Bioanalytical Chemistry, 1975-1982
  http://dx.doi.org/10.1007/s00216-011-5289-4
• Taubert, M., Jehmlich, N., Vogt, C., Richnow, H. H., Schmidt, F., von Bergen, M., and Seifert, J. (2011):
  Time resolved protein-based stable isotope probing (Protein-SIP) analysis allows quantification of induced proteins in substrate shift experiments
  PROTEOMICS 11, 2265-2274
  http://dx.doi.org/10.1002/pmic.201000788
• Washietl, S., Findeiss, S., Muller, S. A., Kalkhof, S., von Bergen, M., Hofacker, I. L., Stadler, P. F., and Goldman, N. (2011):
  RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data
  RNA 17, 578-594
  http://dx.doi.org/rna.2536111 [pii] 10.1261/rna.2536111 [doi]
• Wirth, H., Loffler, M., von Bergen, M., and Binder, H. (2011):
  Expression cartography of human tissues using self organizing maps
  BMC Bioinformatics 12, 306
  
  Publikationen 2010
  
• Jehmlich, N., Schmidt, F., Taubert, M., Seifert, J., Bastida, F., von Bergen, M., Richnow, H.H., and Vogt, C. (2010):
  Protein stable-isotope probing (Protein-SIP)
  Nat Protoc 5, 1957-1966
  http://www.ncbi.nlm.nih.gov/pubmed/21127489
• Jehmlich, N., Kleinsteuber, S., Vogt, C., Benndorf, D., Harms, H., Schmidt, F., von Bergen, M. , and Seifert, J. (2010):
  Phylogenetic and proteomic analysis of an anaerobic toluene-degrading community
  J Appl Microbiol 109, 1937-1945
  http://dx.doi.org/10.1111/j.1365-2672.2010.04823
• Sträuber, H., Hübschmann, T., Jehmlich, N., Schmidt, F., von Bergen, M. , Harms, H., and Muller, S. (2010):
  NBDT (3-(N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino)-3-toluene)--a novel fluorescent dye for studying mechanisms of toluene uptake into vital bacteria
  Cytometry A 77, 113-120
  http://dx.doi.org/10.1002/cyto.a.20811
• Selesi, D., Jehmlich, N., von Bergen, M. , Schmidt, F., Rattei, T., Tischler, P., Lueders, T., and Meckenstock, R. U. (2010):
  Combined genomic and proteomic approaches identify gene clusters involved in anaerobic 2-methylnaphthalene degradation in the sulfate-reducing enrichment culture N47
  J Bacteriol 192, 295-306
  http://dx.doi.org/10.1128/JB.00874-09
• Schirmer, C., Klein, C., von Bergen, M. , Simon, J. C., and Saalbach, A. (2010):
  Human fibroblasts support the expansion of IL-17-producing T cells via up-regulation of IL-23 production by dendritic cells
  Blood116,1715-1725
  http://dx.doi.org/10.1182/blood-2010-01-263509
• Öhler, M., Georgieva, D., Seifert, J., von Bergen, M. , Arni, R. K., Genov, N., and Betzel, C. (2010):
  The venomics of Bothrops alternatus is a pool of acidic proteins with predominant hemorrhagic and coagulopathic activities
  J Proteome Res 9, 2422-2437
  http://dx.doi.org/10.1021/pr901128x
• Müller, S. A., Kohajda, T., Findeiss, S., Stadler, P. F., Washietl, S., Kellis, M., von Bergen, M. , and Kalkhof, S. (2010):
  Optimization of parameters for coverage of low molecular weight proteins
  Anal Bioanal Chem
  http://dx.doi.org/10.1007/s00216-010-4093-x
• Leibeling, S., Schmidt, F., Jehmlich, N., von Bergen, M. , Muller, R. H., and Harms, H. (2010):
  Declining capacity of starving Delftia acidovorans MC1 to degrade phenoxypropionate herbicides correlates with oxidative modification of the initial enzyme
  Environ Sci Technol 44, 3793-3799
  http://dx.doi.org/10.1021/es903619j
• Kung, J. W., Baumann, S., von Bergen, M. , Muller, M., Hagedoorn, P. L., Hagen, W. R., and Boll, M. (2010):
  Reversible biological Birch reduction at an extremely low redox potential
  J Am Chem Soc 132, 9850-9856
  http://dx.doi.org/10.1021/ja103448u
• Jehmlich, N., Hübschmann, T., Gesell Salazar, M., Völker, U., Benndorf, D., Muller, S., von Bergen, M. , and Schmidt, F. (2010):
  Advanced tool for characterization of microbial cultures by combining cytomics and proteomics
  Appl Microbiol Biotechnol 88, 575-584
  http://dx.doi.org/10.1007/s00253-010-2753-6
• Jehmlich, N., Fetzer, I., Seifert, J., Mattow, J., Vogt, C., Harms, H., Thiede, B., Richnow, H. H., von Bergen, M. , and Schmidt, F. (2010):
  Decimal place slope, a fast and precise method for quantifying 13C incorporation levels for detecting the metabolic activity of microbial species
  Mol Cell Proteomics 9, 1221-1227
  http://dx.doi.org/10.1074/mcp.M900407-MCP200
• Georgieva, D., Redecke, L., von Bergen, M. , Genov, N., and Betzel, C. (2010):
  Interactions of ginkgolides A and B with a recombinant human prion protein
  Protein Pept Lett 17, 399-404
  http://www.benthamdirect.org/pages/b_viewarticle.php?3157685
• Georgieva, D., Öhler, M., Seifert, J., von Bergen, M. , Arni, R. K., Genov, N., and Betzel, C. (2010):
  Snake venomic of Crotalus durissus terrificus--correlation with pharmacological activities
  J Proteome Res 9, 2302-2316
  http://dx.doi.org/10.1021/pr901042p
• Fetzer, I., Jehmlich, N., Vogt, C., Richnow, H. H., Seifert, J., Harms, H., von Bergen, M. , and Schmidt, F. (2010):
  Calculation of partial isotope incorporation into peptides measured by mass spectrometry
  BMC Res Notes 3, 178
  http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913921/?tool=pubmed
• Feltens, R., Görner, R., Kalkhof, S., Gröger-Arndt, H., and von Bergen, M. (2010):
  Discrimination of different species from the genus Drosophila by intact protein profiling using matrix-assisted laser desorption ionization mass spectrometry
  BMC Evol Biol 10, 95
  http://dx.doi.org/10.1186/1471-2148-10-95
• Bastida, F., Rosell, M., Franchini, A. G., Seifert, J., Finsterbusch, S., Jehmlich, N., Jechalke, S., von Bergen, M. , and Richnow, H. H. (2010):
  Elucidating MTBE degradation in a mixed consortium using a multidisciplinary approach
  FEMS Microbiol Ecol 73, 370-384
  http://dx.DOI.org/10.1111/j.1574-6941.2010.00889.x


Publikationen 2009

• Heine, F., Stahl, F., Sträuber, H., Wiacek, C., Benndorf, D., Repenning, C., Schmidt, F., Scheper, T., von Bergen, M., Harms, H., Müller, S. (2009):
  Prediction of flocculation ability of brewing yeast inoculates by flow cytometry, proteome analysis, and mRNA profiling
  Cytometry Part A 75A (2), 140-147
  http://dx.doi.org/10.1002/cyto.a.20661

• von Bergen, M., Eidner, A., Schmidt, F., Murugaiyan, J., Wirth, H., Binder, H., Maier, T., Roesler, U.
  Identification of harmless and pathogenic algae of the genus Prototheca by MALDI-MS.
  Proteomics – Clinical applications, 2009, in press

• Schleinitz K.M., Schmeling, S., Jehmlich, N., von Bergen, M., Harms H., Kleinsteuber S., Vogt, C., Fuchs, G.,
  Phenol degradation pathway in the strictly anaerobic iron reducing bacterium Geobacter metallireducens.
  Applied and Environmental Microbiology, in press

• Jehmlich, N., Schmidt, F., Taubert, M., Seifert, J., von Bergen, M., Richnow, H.-H., Vogt, C.,
  Comparison of methods for simultaneous identification of bacterial species and determination of metabolic activity by protein-based stable isotope probing (Protein-SIP) experiments.
  Rapid Communication in Mass Spectrometry, in press

• Benndorf, D., Vogt, C., Jehmlich, N., Schmidt, Y., Thomas, H., Woffendin, G., Shevchenko, A., Richnow, H.H. von Bergen, M.,
  Improving protein extraction and separation methods for investigating the metaproteome of anaerobic benzene communities within sediments.
  Biodegradation, 2009, 20 (6), 737-750

• Risch, M., Georgieva, D. von Bergen, M., Jehmlich, N., Arnid, R.K., Betzel, C.,
  Snake venomics of the Siamese Russell's viper (Daboia russelli siamensis) - Relation to pharmacological activities.
  Journal of Proteomics 72 (2), 256-269

• Wichmann G, Franck U, Herbarth O, Rehwagen M, Dietz A, Massolo L, Ronco A, Müller A.
  Different immunomodulatory effects associated with sub-micrometer particles in ambient air from rural, urban and industrial areas.
  Toxicology. 2009 Mar 29;257(3):127-36. (http://www.ncbi.nlm.nih.gov/pubmed/19159656)

• Jehmlich, N., Schmidt, F., Taubert, M.,Seifert, J., von Bergen, M., Richnow, H.-H., Vogt, C.
  Comparison of methods for simultaneous identification of bacterial species and determination of metabolic activity by protein-based stable isotope probing (Protein-SIP) experiments
  Rapid.Comm.Mass.Spectrom. 2009, 12, 1871-1878

• Junghanns, C., Pecyna, M. J., Böhm, D., Jehmlich, N., Martin, C., von Bergen, M., Schauer, F., Hofrichter, M., Schlosser, D.
  Biochemical and molecular genetic characterisation of a novel laccase produced by the aquatic ascomycete Phoma sp. UHH 5-1-03
  Appl.Microbiol.Biotechnol. 2009, 84 (6), 1095-1105

• Schleinitz, K. M., Schmeling, S., Jehmlich, N., von Bergen, M., Harms, H., Kleinsteuber, S., Vogt, C., Fuchs, G. Phenol degradation in the strictly anaerobic iron-reducing bacterium Geobacter metallireducens GS-15
  Appl.Environ.Microb. 2009, 75 (12), 3912-3919

• Heine, F., Stahl, F., Sträuber, H., Wiacek, C., Benndorf, D., Repenning, C., Schmidt, F., Scheper, T., von Bergen, M., Harms, H., Müller, S. Prediction of flocculation ability of brewing yeast inoculates by flow cytometry, proteome analysis, and mRNA profiling
  Cytometry Part A 2009, 75A (2), 140-147

• Wischgoll, S., Taubert, M., Peters, F., Jehmlich, N., von Bergen, M., Boll, M. Decarboxylating and nondecarboxylating glutaryl-coenzyme A dehydrogenases in the aromatic metabolism of obligately anaerobic bacteria
  J.Bacteriol. 2009, 191 (13), 4401-4409

• Feltens, R., Mögel, I., Röder-Stolinski, C., Simon, J. C., Herberth, G., Lehmann, I. (2010): Chlorobenzene induces oxidative stress in human lung epithelial cells in vitro
  Toxicology and Applied Pharmacology 2009, 242 (1), 100-108

• Georgieva, D., Redecke, L., von Bergen, M., Genov, N., Betzel, C. Interactions of Ginkgolides A and B with a Recombinant Human Prion Protein
  Protein Peptid Letters published online first

• Massolo, L. A., Müller, A., Herbarth, O., Ronco, A. E., Porta, A. A. (2008): Contaminación atmosférica y salud infantil en áreas urbanas e industriales de La Plata, Argentina
  Acta Bioquímica Clínica Latinoamericana 2009, 42 (4), 567-574

• Matysik, S., Herbarth, O., Müller, A. Determination of microbial volatile organic compounds (MVOCs) by passive sampling onto charcoal sorbents
  Chemosphere 2009, 76 (1), 114-119

• Mörbt, N., Mögel, I., Kalkhof, S., Feltens, R., Röder-Stolinski, C., Zheng, J., Vogt, C., Lehmann, I., von Bergen, M. Proteome changes in human bronchoalveolar cells following styrene exposure indicate involvement of oxidative stress in the molecular-response mechanism
  Proteomics 2009, 9 (21), 4909-4933

• Rehders, D., Classen, B., Redecke, L., Buschke, A., Reibe, C., Jehmlich, N., von Bergen, M., Betzel, A., Meyer, B. Peptide NMHRYPNQ of the Cellular Prion Protein (PrPC) Inhibits Aggregation and Is a Potential Key for Understanding Prion-Prion Interactions
  Journal of molecular biology 2009, 392 (1), 198-207

• Rudzok, S., Krejèi, S., Graebsch, C., Herbarth, O., Müller, A., Bauer, M. Toxicity profiles of 4 metals and 17 xenobiotics in the human hepatoma cell line HepG2 and the protozoa Tetrahymena pyriformis - a comparison
  Environ.Toxicol. 2009, published online first

• von Bergen, M., Eidner, A., Schmidt, F., Murugaiyan, J., Wirth, H., Binder, H., Maier, T., Roesler, U. Identification of harmless and pathogenic algae of the genus Prototheca by MALDI-MS
  Proteomics - clinical applications 2009, 3 (7), 774-787

• Wichmann, F., Müller, A., Busi, L. E., Cianni, N., Massolo, L., Schlink, U., Porta, A., Sly, P. D. Increased asthma and respiratory symptoms in children exposed to petrochemical pollution
  J.Allergy Clin.Immunol. 2009, 123 (3), 632-638

• Wichmann, G., Franck, U., Herbarth, O., Rehwagen, M., Dietz, A., Massolo, L., Ronco, A., Müller, A. Different immunomodulatory effects associated with sub-micrometer particles in ambient air from rural, urban and industrial areas
  Toxicology 2009, 257 (3), 127-136

• Matysik S, Herbarth O, Mueller A. Determination of microbial volatile organic compounds (MVOCs) by passive sampling onto charcoal sorbents.
  Chemosphere, in press (http://www.ncbi.nlm.nih.gov/pubmed/19289243)

Publikationen 2008

• Benndorf, D., Müller, A., Bock, K., Manuwald, O., Herbarth, O., von Bergen, M. (2008):
  Identification of spore allergens from the indoor mould Aspergillus versicolor
  Allergy 63 (4), 454-460
  http://dx.doi.org/10.1111/j.1398-9995.2007.01603.x

• Bock, K., Benndorf, D., Müller, A., Bauer, M., von Bergen, M. (2008):
  Identification of allergens from the indoor mold Aspergillus versicolor
  Allergy-Supplement 63, 530-531

• Georgieva, D., Risch, M., Kardas, A., Buck, F., von Bergen, M., Betzel, C. (2008):
  Comparative Analysis of the Venom Proteomes of Vipera ammodytes ammodytes and Vipera ammodytes meridionalis
  J.Proteome Res. 7 (3), 866-886
  http://dx.doi.org/10.1021/pr070376c

• Hehemann, J. H., Redecke, L., Murugaiyan, J., von Bergen, M., Betzel, C., Saborowski, R. (2008):
  Autoproteolytic stability of a trypsin from the marine crab Cancer pagurus
  Biochem.Biophys.Res.Commun. 370 (4), 566-571
  http://dx.doi.org/10.1016/j.bbrc.2008.03.128

• Jehmlich, N., Schmidt, F., von Bergen, M., Richnow, H.-H., Vogt, C. (2008):
  Protein-based stable isotope probing (Protein-SIP) reveals active species within anoxic mixed cultures
  The ISME Journal 2, 1122-1133
  http://dx.doi.org/10.1038/ismej.2008.64

• Jehmlich, N., Schmidt, F., Hartwich, M., von Bergen, M., Richnow, H.-H., Vogt, C. (2008):
  Incorporation of carbon and nitrogen atoms into proteins measured by protein-based stable isotope probing (Protein-SIP)
  Rapid.Comm.Mass.Spectrom. 22 (18), 2889-2897
  http://dx.doi.org/10.1002/rcm.3684

• Johannes, J., Bluschke, A., Jehmlich, N., von Bergen, M., Boll, M. (2008):
  Purification and characterization of active-site components of the putative p-cresol methylhydroxylase membrane complex from Geobacter metallireducens
  J.Bacteriol. 190 (19), 6493-6500
  http://dx.doi.org/10.1128/jb.00790-08

• Rehders, D., Claasen, B., Redecke, L., Reibe, C., Buschke, A., Jehmlich, N., von Bergen, M., Betzel, C., Meyer, B. (2008):
  Aggregation of the human cellular prion protein (PrPC) is quantitatively inhibited by the octapeptide NMHRVPNQ
  J.Pept.Sci. 14 (8), 125-126

• Röder-Stolinski, C., Fischäder, G., Oostingh, G. J., Feltens, R., Kohse, F., von Bergen, M., Mörbt, N., Eder, K., Duschl, A., Lehmann, I. (2008):
  Styrene induces an inflammatory response in human lung epithelial cells via oxidative stress and NF-kB activation
  Toxicol.Appl.Pharmacol. 231 (2), 241-247
  http://dx.doi.org/10.1016/j.taap.2008.04.010

• Röder-Stolinski, C., Feltens, R., Fischäder, G., Kohse, F., von Bergen, M., Mörbt, N., Oostingh, G., Eder, K., Duschl, A., Lehmann, I. (2008):
  Oxidative stress and NF-kB activation are induced by styrene in human lung epithelial cells
  Allergy 63 (Suppl. 88), 36-37

• Thiele, B., Rieder, O., Jehmlich, N., von Bergen, M., Müller, M., Boll, M. (2008):
  Aromatizing cyclohexa-1,5-diene-1-carbonyl-coenzyme A oxidase. Characterization and its role in anaerobic aromatic metabolism
  J.Biol.Chem. 283 (30), 20713-20721
  http://dx.doi.org/10.1074/jbc.m802841200

Publikationen bis 2007

• Benndorf, D., Balcke, G. U., Harms, H., von Bergen, M. (2007):
  Functional metaproteome analysis of protein extracts from contaminated soil and groundwater
  ISME Journal 1 (3), 224-234
  http://dx.doi.org/10.1038/ismej.2007.39

• Gündel, U., Benndorf, D., von Bergen, M., Altenburger, R., Küster, E. (2007):
  Vitellogenin cleavage products as indicators for toxic stress in zebra fish embryos: a proteomic approach
  Proteomics 7 (24), 4541-4554
  http://dx.doi.org/10.1002/pmic.200700381

• Heine, F., Wiacek, C., Benndorf, D., Sträuber, H., Stahl, F., von Bergen, M., Harms, H., Müller, S. (2007):
  Evidence of flocculation in brewing yeast strains by flow cytometry, proteome and mRNA profiling
  Cytometry Part A 71A (7), 513

• Heine, F., Wiacek, C., Benndorf, D., Sträuber, H., Stahl, F., von Bergen, M., Harms, H., Müller, S. (2007):
  Evidence of flocculation in brewing yeast strains by flow cytometry, proteome and mRNA profiling
  Cytometry Part A 71A (9), 761

• Kellner, H., Jehmlich, N., Benndorf, D., Hoffmann, R., Rühl, M., Hoegger, P. J., Majcherczyk, A., Kües, U., von Bergen, M., Buscot, F. (2007):
  Detection, quantification and identification of fungal extracellular laccases using polyclonal antibody and mass spectrometry
  Enzyme Microb.Technol. 41 (6-7), 694-701
  http://dx.doi.org/10.1016/j.enzmictec.2007.06.002

• Martin, C., Pecyna, M., Kellner, H., Jehmlich, N., Junghanns, C., Benndorf, D., von Bergen, M., Schlosser, D. (2007):
  Purification and biochemical characterization of a laccase from the aquatic fungus Myrioconium sp. UHH 1-13-18-4 and molecular analysis of the laccase-encoding gene
  Appl.Microbiol.Biotechnol. 77 (3), 613-624
  http://dx.doi.org/10.1007/s00253-007-1207-2

• Santos, P. M., Roma, V., Benndorf, D., von Bergen, M., Harms, H., Sa-Correia, I. (2007):
  Mechanistic insights into the global response to phenol in the phenol-biodegrading strain Pseudomonas sp. M1 revealed by quantitative proteomics
  OMICS 11 (3), 233-251
  http://dx.doi.org/10.1089/omi.2007.0009

• Schäfer, F., Breuer, U., Benndorf, D., von Bergen, M., Harms, H., Müller, R. H. (2007):
  Growth of Aquincola tertiaricarbonis L108 on tert-butyl alcohol leads to the induction of a phthalate dioxygenase-related protein and its associated oxidoreductase subunit
  Eng.Life Sci. 7 (5), 512-519
  http://dx.doi.org/10.1002/elsc.200700011

2013 (10)

• Boll, K., Reiche, K., Kasack, K., Mörbt, N., Kretzschmar, A.K., Tomm, J.M., Verhaegh, G., Schalken, J., von Bergen, M., Horn, F., Hackermüller, J. (2013):
  MiR-130a, miR-203 and miR-205 jointly repress key oncogenic pathways and are downregulated in prostate carcinoma
  Oncogene 32 , 277 - 285
  full text (url)
• Ferrer, M., Ruiz, A., Lanza, F., Haange, S.-B., Oberbach, A., Till, H., Bargiela, R., Campoy, C., Segura, M.T., Richter, M., von Bergen, M., Seifert, J., Suarez, A. (2013):
  Microbiota from the distal guts of lean and obese adolescents exhibit partial functional redundancy besides clear differences in community structure
  Environ. Microbiol. 15 (1), 211 - 226
  full text (url)
• Guazzaroni, M.-E., Herbst, F.-A., Lores, I., Tamames, J., Peláez, A.I., López-Cortés, N., Alcaide, M., del Pozo, M.V., Vieites, J.M., von Bergen, M., Gallego, J.L.R., Bargiela, R., López-López, A., Pieper, D.H., Rosselló-Móra, R., Sánchez, J., Seifert, J., Ferrer, M. (2013):
  Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation
  ISME J. 7 , 122 - 136
  full text (url)
• Jahn, M., Seifert, J., von Bergen, M., Schmid, A., Bühler, B., Müller, S. (2013):
  Subpopulation-proteomics in prokaryotic populations
  Curr. Opin. Biotechnol. 24 (1), 79 - 87
  full text (url)
• Kliemt, S., Lange, C., Otto, W., Hintze, V., Möller, S., von Bergen, M., Hempel, U., Kalkhof, S. (2013):
  Sulfated hyaluronan containing collagen matrices enhance cell-matrix-interaction, endocytosis, and osteogenic differentiation of human mesenchymal stromal cells
  J. Proteome Res. 12 (1), 378 - 389
  full text (url)
• Leibeling, S., Maeß, M.B., Centler, F., Kleinsteuber, S., von Bergen, M., Thullner, M., Harms, H., Müller, R.H. (2013):
  Posttranslational oxidative modification of (R)-2-(2,4-dichlorophenoxy)propionate/α-ketoglutarate-dependent dioxygenases (RdpA) leads to improved degradation of 2,4-dichlorophenoxyacetate (2,4-D)
  Eng. Life Sci. 13 (3), 278 - 291
  full text (url)
• Markle, J.G.M., Frank, D.N., Mortin-Toth, S., Robertson, C.E., Feazel, L. M. , Rolle-Kampczyk, U., von Bergen, M., McCoy, C.D., Macpherson, A.J., Danska, J.S. (2013):
  Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity
  Science 339 (6123 ), 1084 - 1088
  full text (url)
• Murugaiyan, J., Rockstroh, M., Wagner, J., Baumann, S., Schorsch, K., Trump, S., Lehmann, I., von Bergen, M., Tomm, J.M. (2013):
  Benzo[a]pyrene affects Jurkat T cells in the activated state via the antioxidant response element dependent Nrf2 pathway leading to decreased IL-2 secretion and redirecting glutamine metabolism
  Toxicol. Appl. Pharmacol. 269 (3), 307 - 316
  full text (url)
• Taubert, M., von Bergen-Tomm, M., Seifert, J. (2013):
  Limitations in detection of 15N incorporation by mass spectrometry in protein-based stable isotope probing (protein-SIP)
  Anal. Bioanal. Chem. 405 (12), 3989 - 3996
  full text (url)
• Weisse, K., Winkler, S., Hirche, F., Herberth, G., Hinz, D., Bauer, M., Roeder, S., Rolle-Kampczyk, U., von Bergen, M., Olek, S., Richter, T., Diez, U., Borte, M., Stangl, G.I., Lehmann, I. (2013):
  Maternal and newborn vitamin D status and its impact on food allergy development in the German LINA cohort study
  Allergy 68 (2), 220 - 228
  full text (url)

2012 (24)

• Baumgarten, T., Sperling, S., Seifert, J., von Bergen, M., Steiniger, F., Wick, L.Y., Heipieper, H.J. (2012):
  Membrane vesicle formation as multiple stress response mechanism enhances cell surface hydrophobicity and biofilm formation of Pseudomonas putida DOT-T1E
  Appl. Environ. Microb. 78 (17), 6217 - 6224
  full text (url)
• Bönisch, U., Böhme, A., Kohajda, T., Mögel, I., Schütze, N., von Bergen, M., Simon, J.C., Lehmann, I., Polte, T. (2012):
  Volatile organic compounds enhance allergic airway inflammation in an experimental mouse model
  PLoS One 7 (7), e39817
  full text (url)
• Bozinovski, D., Herrmann, S., Richnow, H.-H., von Bergen, M., Seifert, J., Vogt, C. (2012):
  Functional analysis of an anaerobic m-xylene-degrading enrichment culture using protein-based stable isotope probing
  FEMS Microbiol.Ecol. 81 (1), 134 - 144
  full text (url)
• Goettsch, C., Kliemt, S., Sinningen, K., von Bergen, M., Hofbauer, L.C., Kalkhof, S. (2012):
  Quantitative proteomics reveals novel functions of osteoclast-associated receptor in STAT signaling and cell adhesion in human endothelial cells
  J. Mol. Cell. Cardiol. 53 (6), 829 - 837
  full text (url)
• Gündel, U., Kalkhof, S., Zitzkat, D. P., von Bergen, M., Altenburger, R., Küster, E. (2012):
  Concentration-response concept in ecotoxicoproteomics: effects of different phenanthrene concentrations to the zebrafish (Danio rerio) embryo proteome
  Ecotox. Environ. Safe. 76 (1), 11 - 22
  full text (url)
• Haange, S.-B., Oberbach, A., Schlichting, N., Hugenholtz, F., Smidt, H., von Bergen, M., Till, H., Seifert, J. (2012):
  Metaproteome analysis and molecular genetics of rat intestinal microbiota reveals section and localisation resolved species distribution and enzymatic functionalities
  J. Proteome Res. 11 (11), 5406 - 5417
  full text (url)
• Haas, S., Jahnke, H.-G., Moerbt, N., von Bergen, M., Aharinejad, S., Andrukhova, O., Robitzki, A.A. (2012):
  DIGE proteome analysis reveals suitability of ischemic cardiac in vitro model for studying cellular response to acute ischemia and regeneration
  PLoS One 7 (2), e31669
  full text (url)
• Hoernig, F., Weisse, K., Röder, S., Kohajda, T., von Bergen-Tomm, M., Borte, M., Diez, U., Simon, J., Denburg, J., Lehmann, I. (2012):
  Infantile eosinophil/basophil progenitors are more sensitive to indoor chemical exposures compared to their mothers
  Allergy 67 (SI), 574 - 574
• Jehmlich, N., Kopinke, F.-D., Lenhard, S., Vogt, C., Herbst, F.-A., Seifert, J., Lissner, U., Völker, U., Schmidt, F., von Bergen, M. (2012):
  Sulfur-³⁶S stable isotope labeling of amino acids for quantification (SULAQ)
  Proteomics 12 (1), 37 - 42
  full text (url)
• Kespohl, S., Kotschy-Lang, N., Tomm, J.M., von Bergen, M., Maryska, S., Brüning, T., Raulf-Heimsoth, M. (2012):
  Occupational IgE-mediated softwood allergy: characterization of the causative allergen
  Int. Arch. Allergy Immunol. 157 (2), 202 - 208
  full text (url)
• Marco-Urea, E., Seifert, J., von Bergen, M., Adrian, L. (2012):
  Stable isotope peptide mass spectrometry to decipher amino acid metabolism in Dehalococcoides strain CBDB1
  J. Bacteriol. 194 (16), 4169 - 4177
  full text (url)
• Morris, B.E.L., Herbst, F.-A., Bastida, F., Seifert, J., von Bergen, M., Richnow, H.-H., Suflita, J.M. (2012):
  Microbial interactions during residual oil and n-fatty acid metabolism by a methanogenic consortium
  Environ. Microbiol. Rep. 4 (3), 297 - 306
  full text (url)
• Müller, S.A., van der Smissen, A., von Feilitzsch, M., Anderegg, U., Kalkhof, S., von Bergen, M. (2012):
  Quantitative proteomics reveals altered expression of extracellular matrix related proteins of human primary dermal fibroblasts in response to sulfated hyaluronan and collagen applied as artificial extracellular matrix
  J. Mater. Sci.-Mater. Med. 23 (12), 3053 - 3065
  full text (url)
• Oberbach, A., von Bergen, M., Blueher, S., Lehmann, S., Till, H. (2012):
  Combined serum proteomic and metabonomic profiling after laparoscopic sleeve gastrectomy in children and adolescents
  J. Laparoendosc. Adv. Surg. Tech. 22 (2), 184 - 188
  full text (url)
• Oberender, J., Kung, J.W., Seifert, J., von Bergen, M., Boll, M. (2012):
  Identification and characterization of a succinyl-coenzyme A (CoA):benzoate CoA transferase in Geobacter metallireducens
  J. Bacteriol. 194 (10), 2501 - 2508
  full text (url)
• Pohler, P., Lehmann, J., Veneruso, V., Tomm, J., von Bergen, M., Lambrecht, B., Kohn, B., Weingart, C., Müller, T.H., Seltsam, A. (2012):
  Evaluation of the tolerability and immunogenicity of ultraviolet C-irradiated autologous platelets in a dog model
  Transfusion 52 (11), 2414 - 2426
  full text (url)
• Reinhold, A., Westermann, M., Seifert, J., von Bergen, M., Schubert, T., Diekert, G. (2012):
  Impact of vitamin B₁₂ on the formation of the tetrachloroethene reductive dehalogenase in Desulfitobacterium hafniense strain Y51
  Appl. Environ. Microb. 78 (22), 8025 - 8032
  full text (url)
• Salbach, J., Kliemt, S., Rauner, M., Rachner, T.D., Goettsch, C., Kalkhof, S., von Bergen, M., Moller, S., Schnabelrauch, M., Hintze, V., Scharnweber, D., Hofbauer, L.C. (2012):
  The effect of the degree of sulfation of glycosaminoglycans on osteoclast function and signaling pathways
  Biomaterials 33 (33), 8418 - 8429
  full text (url)
• Seifert, J., Taubert, M., Jehmlich, N., Schmidt, F., Völker, U., Vogt, C., Richnow, H.H., von Bergen, M. (2012):
  Protein-based stable isotope probing (protein-SIP) in functional metaproteomics
  Mass Spectrom. Rev. 31 (6), 683 - 697
  full text (url)
• Taubert, M., Vogt, C., Wubet, T., Kleinsteuber, S., Tarkka, M.T., Harms, H., Buscot, F., Richnow, H.-H., von Bergen, M., Seifert, J. (2012):
  Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium
  ISME J. 6 (12), 2291 - 2301
  full text (url)
• von Bergen, M., Reiche, K., Hösler, N., Rockstroh, M., Horn, F., Hackermüller, J., Tomm, J. (2012):
  A time resolved analysis of nc/mRNA and protein expression throughout Th cell activation
  Immunology 137 (Suppl. S1), 364 - 364
  full text (url)
• Weisse, K., Lehmann, I., Heroux, D., Kohajda, T., Herberth, G., Röder, S., von Bergen, M., Borte, M., Denburg, J. (2012):
  The LINA cohort: indoor chemical exposure, circulating eosinophil/basophil (Eo/B) progenitors and early life skin manifestations
  Clin. Exp. Allergy 42 (9), 1337 - 1346
  full text (url)
• Weisse, K., Winkler, S., Stangl, G.I., Hirche, F., Herberth, G., Hinz, D., Bauer, M., Röder, S., Rolle-Kampczyk, U., von Bergen-Tomm, M., Olek, S., Sack, U., Borte, M., Richter, T., Lehmann, I. (2012):
  Maternal and newborn vitamin D status and its impact on fetal regulatory T cell development and children's atopy risk in the German LINA cohort study
  J. Reprod. Immunol. 94 (1), 53 - 54
  full text (url)
• Wirth, H., von Bergen, M., Murugaiyan, J., Roesler, U., Stokowy, T., Binder, H. (2012):
  MALDI-typing of infectious algae of the genus Prototheca using SOM portraits
  J. Microbiol. Methods 88 (1), 83 - 89
  full text (url)