Publikationen

Inhalt:

2017 (15)
2016 (51)
2015 (39)
2014 (32)
2013 (37)
2012 (35)
2011 (34)
2010 (28)
2009 (25)
2008 (19)
2007 (25)
2006 (14)
2005 (13)
2004 (11)
2003 (1)
2002 (11)
2001 (4)
2000 (5)
1999 (1)
1997 (1)

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2017 (15)

  • Chupani, L., Zusková, É., Niksirat, H., Panáček, A., Lünsmann, V., Haange, S.-B., von Bergen, M., Jehmlich, N., (2017):
    Effects of chronic dietary exposure of zinc oxide nanoparticles on the serum protein profile of juvenile common carp (Cyprinus carpio L.)
    Sci. Total Environ. 579 , 1504 - 1511
    Volltext (URL)
  • Ebenau-Jehle, C., Mergelsberg, M., Fischer, S., Brüls, T., Jehmlich, N., von Bergen, M., Boll, M., (2017):
    An unusual strategy for the anoxic biodegradation of phthalate
    ISME J. 11 (1), 224 - 236
    Volltext (URL)
  • Escher, B.I., Hackermüller, J., Polte, T., Scholz, S., Aigner, A., Altenburger, R., Böhme, A., Bopp, S.K., Brack, W., Busch, W., Chadeau-Hyam, M., Covaci, A., Eisenträger, A., Galligan, J.J., Garcia-Reyero, N., Hartung, T., Hein, M., Herberth, G., Jahnke, A., Kleinjans, J., Klüver, N., Krauss, M., Lamoree, M., Lehmann, I., Luckenbach, T., Miller, G.W., Müller, A., Phillips, D.H., Reemtsma, T., Rolle-Kampczyk, U., Schüürmann, G., Schwikowski, B., Tan, Y.-M., Trump, S., Walter-Rohde, S., Wambaugh, J.F., (2017):
    From the exposome to mechanistic understanding of chemical-induced adverse effects
    Environ. Int. 99 , 97 - 106
    Volltext (URL)
  • Herberth, G., Pierzchalski, A., Feltens, R., Bauer, M., Röder, S., Olek, S., Hinz, D., Borte, M., von Bergen, M., Lehmann, I., (2017):
    Prenatal phthalate exposure associates with low regulatory T-cell numbers and atopic dermatitis in early childhood: Results from the LINA mother-child study. Letter to the editor
    J. Allergy Clin. Immunol. 139 (4), 1376 - 1379.e8
    Volltext (URL)
  • Jahreis, S., Trump, S., Bauer, M., Bauer, T., Thürmann, L., Feltens, R., Wang, Q., Gu, L., Grützmann, K., Röder, S., Averbeck, M., Weichenhan, D., Plass, C., Sack, U., Borte, M., Dubourg, V., Schüürmann, G., Simon, J.C., von Bergen, M., Hackermüller, J., Eils, R., Lehmann, I., Polte, T., (2017):
    Maternal phthalate exposure promotes allergic airway inflammation over two generations via epigenetic modifications
    J. Allergy Clin. Immunol.
    Volltext (URL)
  • Kadisch, M., Julsing, M.K., Schrewe, M., Jehmlich, N., Scheer, B., von Bergen, M., Schmid, A., Bühler, B., (2017):
    Maximization of cell viability rather than biocatalyst activity improves whole-cell ω-oxyfunctionalization performance
    Biotechnol. Bioeng. 114 (4), 874 - 884
    Volltext (URL)
  • Kallies, R., Kiesel, B., Schmidt, M., Kacza, J., Ghanem, N., Narr, A., Zopfi, J., Wick, L.Y., Hackermüller, J., Harms, H., Chatzinotas, A., (2017):
    Complete genome sequence of Pseudoalteromonas phage vB_PspS-H40/1 (formerly H40/1) that infects Pseudoalteromonas sp. strain H40 and is used as biological tracer in hydrological transport studies
    Stand. Genomic Sci. 12 , art. 20
    Volltext (URL)
  • Oberbach, A., Haange, S.-B., Schlichting, N., Heinrich, M., Lehmann, S., Till, H., Hugenholtz, F., Kullnick, Y., Smidt, H., Frank, K., Seifert, J., Jehmlich, N., von Bergen, M., (2017):
    Metabolic in vivo labeling highlights differences of metabolically active microbes from the mucosal gastrointestinal microbiome between high-fat and normal chow diet
    J. Proteome Res. 16 (4), 1593 - 1604
    Volltext (URL)
  • Potratz, S., Tarnow, P., Jungnickel, H., Baumann, S., von Bergen, M., Tralau, T., Luch, A., (2017):
    Combination of metabolomics with cellular assays reveals new biomarkers and mechanistic insights on xenoestrogenic exposures in MCF-7 cells
    Chem. Res. Toxicol. 30 (4), 883 - 892
    Volltext (URL)
  • Schulze, T., Ahel, M., Ahlheim, J., Aït-Aïssa, S., Brion, F., Di Paolo, C., Froment, J., Hidasi, A.O., Hollender, J., Hollert, H., Hu, M., Kloß, A., Koprivica, S., Krauss, M., Muz, M., Oswald, P., Petre, M., Schollée, J.E., Seiler, T.-B., Shao, Y., Slobodnik, J., Sonavane, M., Suter, M.J.-F., Tollefsen, K.E., Tousova, Z., Walz, K.-H., Brack, W., (2017):
    Assessment of a novel device for onsite integrative large-volume solid phase extraction of water samples to enable a comprehensive chemical and effect-based analysis
    Sci. Total Environ. 581–582 , 350 - 358
    Volltext (URL)
  • Schüttler, A., Reiche, K., Altenburger, R., Busch, W., (2017):
    The transcriptome of the zebrafish embryo after chemical exposure: a meta-analysis
    Toxicol. Sci.
    Volltext (URL)
  • Starke, R., Müller, M., Gaspar, M., Marz, M., Küsel, K., Totsche, K.U., von Bergen, M., Jehmlich, N., (2017):
    Candidate Brocadiales dominates C, N and S cycling in anoxic groundwater of a pristine limestone-fracture aquifer
    J. Proteomics 152 , 153 - 160
    Volltext (URL)
  • Wewering, F., Jouy, F., Caliskan, S., Kalkhof, S., von Bergen, M., Luch, A., Zellmer, S., (2017):
    Hepatic co-cultures in vitro reveal suitable to detect Nrf2-mediated oxidative stress responses on the bladder carcinogen o-anisidine
    Toxicol. Vitro 40 , 153 - 160
    Volltext (URL)
  • Wewering, F., Jouy, F., Wissenbach, D.K., Gebauer, S., Blüher, M., Gebhardt, R., Pirow, R., von Bergen, M., Kalkhof, S., Luch, A., Zellmer, K., (2017):
    Characterization of chemical-induced sterile inflammation in vitro: application of the model compound ketoconazole in a human hepatic co-culture system
    Arch. Toxicol. 91 (2), 799 - 810
    Volltext (URL)
  • Winter, M., Thürmann, L., Gu, Z., Schüürmann, G., Herberth, G., Hinz, D., von Bergen, M., Harms, H., Olek, S., Röder, S., Borte, M., Eils, R., Lehmann, I., Trump, S., (2017):
    The benzene metabolite 1,4-benzoquinone reduces regulatory T-cell function: A potential mechanism for tobacco smoke–associated atopic dermatitis
    J. Allergy Clin. Immunol.
    Volltext (URL)
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2016 (51)

  • Aigner, A., Buesen, R., Gant, C., Gooderham, N., Greim, H., Hackermüller, J., Hubesch, B., Laffont, M., Marczylo, E., Meister, G., Petrick, J.S., Rasoulpour, R.J., Sauer, U.G., Schmidt, K., Seitz, H., Slack, F., Sukata, T., van der Vies, S.M., Verhaert, J., Witwer, K.W., Poole, A., (2016):
    Advancing the use of noncoding RNA in regulatory toxicology: Report of an ECETOC workshop
    Regul. Toxicol. Pharmacol. 82 , 127 - 139
    Volltext (URL)
  • Bastida, F., Jehmlich, N., (2016):
    It's all about functionality: How can metaproteomics help us to discuss the attributes of ecological relevance in soil?
    J. Proteomics 144 , 159 - 161
    Volltext (URL)
  • Bastida, F., Jehmlich, N., Lima, K., Morris, B.E.L., Richnow, H.H., Hernández, T., von Bergen, M., García, C., (2016):
    The ecological and physiological responses of the microbial community from a semiarid soil to hydrocarbon contamination and its bioremediation using compost amendment
    J. Proteomics 135 , 162 - 169
    Volltext (URL)
  • Bastida, F., Torres, I.F., Moreno, J.L., Baldrian, P., Ondoño, S., Ruiz-Navarro, A., Hernández, T., Richnow, H.H., Starke, R., García, C., Jehmlich, N., (2016):
    The active microbial diversity drives ecosystem multifunctionality and is physiologically related to carbon availability in Mediterranean semi-arid soils
    Mol. Ecol. 25 (18), 4660 - 4673
    Volltext (URL)
  • Bauer, T., Trump, S., Ishaque, N., Thürmann, L., Gu, L., Bauer, M., Bieg, M., Gu, Z., Weichenhan, D., Mallm, J.-P., Röder, S., Herberth, G., Takada, E., Mücke, O., Winter, M., Junge, K.M., Grützmann, K., Rolle-Kampczyk, U., Wang, Q., Lawerenz, C., Borte, M., Polte, T., Schlesner, M., Schanne, M., Wiemann, S., Geörg, C., Stunnenberg, H.G., Plass, C., Rippe, K., Mizuguchi, J., Herrmann, C., Eils, R., Lehmann, I., (2016):
    Environment-induced epigenetic reprogramming in genomic regulatory elements in smoking mothers and their children
    Mol. Syst. Biol. 12 (3), art. 861
    Volltext (URL)
  • Bhattacharya, D.P., Canzler, S., Kehr, S., Hertel, J., Grosse, I., Stadler, P.F., (2016):
    Phylogenetic distribution of plant snoRNA families
    BMC Genomics 17 , art. 969
    Volltext (URL)
  • Canzler, S., Stadler, P.F., Hertel, J., (2016):
    U6 snRNA intron insertion occurred multiple times during fungi evolution
    RNA Biol. 13 (2), 119 - 127
    Volltext (URL)
  • Dey, P., Gola, D., Mishra, A., Malik, A., Kumar, P., Singh, D.K., Patel, N., von Bergen, M., Jehmlich, N., (2016):
    Comparative performance evaluation of multi-metal resistant fungal strains for simultaneous removal of multiple hazardous metals
    J. Hazard. Mater. 318 , 679 - 685
    Volltext (URL)
  • Dietrich, S., Floegel, A., Troll, M., Kühn, T., Rathmann, W., Peters, A., Sookthai, D., von Bergen, M., Kaaks, R., Adamski, J., Prehn, C., Boeing, H., Schulze, M.B., Illig, T., Pischon, T., Knüppel, S., Wang-Sattler, R., Drogan, D., (2016):
    Random Survival Forest in practice: a method for modelling complex metabolomics data in time to event analysis
    Int. J. Epidemiol. 45 (5), 1406 - 1420
    Volltext (URL)
  • Dragelj, J.L., Stanković, I.M., Božinovski, D.M., Meyer, T., Veljković, D.Ž., Medaković, V.B., Knapp, E.W., Zarić, S.D., (2016):
    C–H/O interactions of aromatic CH donors within proteins: a crystallographic study
    Cryst. Growth Des. 16 (4), 1948 - 1957
    Volltext (URL)
  • Els-Heindl, S., Kostelnik, K.B., Klöting, N., Baumann, S., von Bergen, M., Beck-Sickinger, A.G., (2016):
    A palmitoylated ghrelin receptor ligand shows high metabolic invivo stability and bioavailability
    Neuropeptides 55 , 1 - 12
    Volltext (URL)
  • Förster, Y., Schmidt, J.R., Wissenbach, D.K., Pfeiffer, S.E.M., Baumann, S., Hofbauer, L.C., von Bergen, M., Kalkhof, S., Rammelt, S., (2016):
    Microdialysis sampling from wound fluids enables quantitative assessment of cytokines, proteins, and metabolites reveals bone defect-specific molecular profiles
    PLOS One 11 (7), e0159580
    Volltext (URL)
  • Gjesing Welinder, K., Hansen, R., Toft Overgaard, M., Brohus, M., Sønderkær, M., von Bergen, M., Rolle-Kampczyk, U., Otto, W., Lindahl, T.L., Arinell, K., Evans, A.L., Swenson, J.E., Revsbech, I.G., Frøbert, O., (2016):
    Biochemical foundations of health and energy conservation in hibernating free-ranging subadult brown bear Ursus arctos
    J. Biol. Chem. 291 , 22509 - 22523
    Volltext (URL)
  • Goris, T., Schiffmann, C.L., Gadkari, J., Adrian, L., von Bergen, M., Diekert, G., Jehmlich, N., (2016):
    Proteomic data set of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates
    Data in Brief 8 , 637 - 642
    Volltext (URL)
  • Haange, S.-B., Jehmlich, N., (2016):
    Proteomic interrogation of the gut microbiota: potential clinical impact
    Expert Rev. Proteomics 13 (6), 535 - 537
    Volltext (URL)
  • Herbst, F.-A., Lünsmann, V., Kjeldal, H., Jehmlich, N., Tholey, A., von Bergen, M., Nielsen, J.L., Hettich, R.L., Seifert, J., Nielsen, P.H., (2016):
    Enhancing metaproteomics—The value of models and defined environmental microbial systems
    Proteomics 16 (5), 783 - 798
    Volltext (URL)
  • Hoeke, H., Roeder, S., Mueller, A., Bertsche, T., Borte, M., Rolle-Kampczyk, U., von Bergen, M., Wissenbach, D.K., (2016):
    Biomonitoring of prenatal analgesic intake and correlation with infantile anti-aeroallergens IgE
    Allergy 71 (6), 901 - 906
    Volltext (URL)
  • Hörnig, F., Kohajda, T., Röder, S., Herberth, G., von Bergen, M., Borte, M., Diez, U., Rolle-Kampczyk, U., Simon, J.-C., Denburg, J.A., Lehmann, I., Junge, K.M., (2016):
    The LINA study: higher sensitivity of infant compared to maternal eosinophil/basophil progenitors to indoor chemical exposures
    J. Environ. Public Health 2016 , art. 5293932
    Volltext (URL)
  • Huber, K., Dänicke, S., Rehage, J., Sauerwein, H., Otto, W., Rolle-Kampczyk, U., von Bergen, M., (2016):
    Metabotypes with properly functioning mitochondria and antiinflammation predict extended productive life span in dairy cows
    Sci. Rep. 6 , art. 24642
    Volltext (URL)
  • Jehmlich, N., Vogt, C., Lünsmann, V., Richnow, H.H., von Bergen, M., (2016):
    Protein-SIP in environmental studies
    Curr. Opin. Biotechnol. 41 , 26 - 33
    Volltext (URL)
  • Kalkhof, S., Schildbach, S., Blumert, C., Horn, F., von Bergen, M., Labudde, D., (2016):
    PIPINO: a software package to facilitate the identification of protein-protein interactions from affinity purification mass spectrometry data
    Biomed Res. Int. 2016 , art. 2891918
    Volltext (URL)
  • Kenéz, Á., Dänicke, S., Rolle-Kampczyk, U., von Bergen, M., Huber, K., (2016):
    A metabolomics approach to characterize phenotypes of metabolic transition from late pregnancy to early lactation in dairy cows
    Metabolomics 12 (11), art. 165
    Volltext (URL)
  • Kjeldal, H., Zhou, N.A., Wissenbach, D.K., von Bergen, M., Gough, H.L., Nielsen, J.L., (2016):
    Genomic, proteomic, and metabolite characterization of gemfibrozil-degrading organism Bacillus sp. GeD10
    Environ. Sci. Technol. 50 (2), 744 - 755
    Volltext (URL)
  • Kublik, A., Deobald, D., Hartwig, S., Schiffmann, C.L., Andrades, A., von Bergen, M., Sawers, R.G., Adrian, L., (2016):
    Identification of a multi-protein reductive dehalogenase complex in Dehalococcoides mccartyi strain CBDB1 suggests a protein-dependent respiratory electron transport chain obviating quinone involvement
    Environ. Microbiol. 18 (9), 3044 - 3056
    Volltext (URL)
  • Kühn, T., Floegel, A., Sookthai, D., Johnson, T., Rolle-Kampczyk, U., Otto, W., von Bergen, M., Boeing, H., Kaaks, R., (2016):
    Higher plasma levels of lysophosphatidylcholine 18:0 are related to a lower risk of common cancers in a prospective metabolomics study
    BMC Med. 14 , art. 13
    Volltext (URL)
  • Kühn, T., Sookthai, D., Rolle-Kampczyk, U., Otto, W., Otto, W., von Bergen, M., Kaaks, R., Johnson, T., (2016):
    Mid- and long-term correlations of plasma metabolite concentrations measured by a targeted metabolomics approach
    Metabolomics 12 (12), art. 184
    Volltext (URL)
  • Lünsmann, V., Kappelmeyer, U., Benndorf, R., Martínez-Lavanchy, P.M., Taubert, A., Adrian, L., Duarte, M., Pieper, D.H., von Bergen, M., Müller, J.A., Heipieper, H.J., Jehmlich, N., (2016):
    In situ protein-SIP highlights Burkholderiaceae as key players degrading toluene by para ring hydroxylation in a constructed wetland model
    Environ. Microbiol. 18 (4), 1176 - 1186
    Volltext (URL)
  • Mahnke, H., Ballent, M., Baumann, S., Imperiale, F., von Bergen, M., Lanusse, C., Lifschitz, A.L., Honscha, W., Halwachs, S., (2016):
    The ABCG2 efflux transporter in the mammary gland mediates veterinary drug secretion across the blood-milk barrier into milk of dairy cows
    Drug Metab. Dispos. 44 (5), 700 - 708
    Volltext (URL)
  • Malik, A.A., Chowdhury, S., Schlager, V., Oliver, A., Puissant, J., Vazquez, P.G.M., Jehmlich, N., von Bergen, M., Griffiths, R.I., Gleixner, G., (2016):
    Soil fungal:bacterial ratios are linked to altered carbon cycling
    Frontiers in Microbiology 7 , art. 1247
    Volltext (URL)
  • Mussotter, F., Tomm, J.M., El Ali, Z., Pallardy, M., Kerdine-Römer, S., Götz, M., von Bergen, M., Haase, A., Luch, A., (2016):
    Proteomics analysis of dendritic cell activation by contact allergens reveals possible biomarkers regulated by Nrf2
    Toxicol. Appl. Pharmacol. 313 , 170 - 179
    Volltext (URL)
  • Oberbach, A., Adams, V., Schlichting, N., Heinrich, M., Kullnick, Y., Lehmann, S., Feder, S., Correia, J.C., Mohr, F.-W., Völker, U., Jehmlich, N., (2016):
    Proteome profiles of HDL particles of patients with chronic heart failure are associated with immune response and also include bacteria proteins
    Clin. Chim. Acta 453 , 114 - 122
    Volltext (URL)
  • Pham, H.T., Arnhard, K., Asad, Y.J., Deng, L., Felder, T.K., St. John-Williams, L., Kaever, V., Leadley, M., Mitro, N., Muccio, S., Prehn, C., Rauh, M., Rolle-Kampczyk, U., Thompson, J.W., Uhl, O., Ulaszewska, M., Vogeser, M., Wishart, D.S., Koal, T., (2016):
    Inter-laboratory robustness of next-generation bile acid study in mice and humans: international ring trial involving 12 laboratories
    J. Appl. Lab. Med. 1 (2), 129 - 142
    Volltext (URL)
  • Rolle-Kampczyk, U.E., Krumsiek, J., Otto, W., Röder, S.W., Kohajda, T., Borte, M., Theis, F., Lehmann, I., von Bergen, M., (2016):
    Metabolomics reveals effects of maternal smoking on endogenous metabolites from lipid metabolism in cord blood of newborns
    Metabolomics 12 (4), art. 76
    Volltext (URL)
  • Rother, S., Samsonov, S.A., Hofmann, T., Blaszkiewicz, J., Köhling, S., Moeller, S., Schnabelrauch, M., Rademann, J., Kalkhof, S., von Bergen, M., Pisabarro, M.T., Scharnweber, D., Hintze, V., (2016):
    Structural and functional insights into the interaction of sulfated glycosaminoglycans with tissue inhibitor of metalloproteinase-3 – A possible regulatory role on extracellular matrix homeostasis
    Acta Biomater. 45 , 143 - 154
    Volltext (URL)
  • Schaarschmidt, J., Nagel, M.B.M., Huth, S., Jaeschke, H., Moretti, R., Hintze, V., von Bergen, M., Kalkhof, S., Meiler, J., Paschke, R., (2016):
    Rearrangement of the extracellular domain/extracellular loop 1 interface is critical for thyrotropin receptor activation
    J. Biol. Chem. 291 , 14095 - 14108
    Volltext (URL)
  • Schaubeck, M., Clavel, T., Calasan, J., Lagkouvardos, I., Haange, S.B., Jehmlich, N., Basic, M., Dupont, A., Hornef, M., von Bergen, M., Bleich, A., Haller, D., (2016):
    Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence
    Gut 65 , 225 - 237
    Volltext (URL)
  • Schiffmann, C.L., Otto, W., Hansen, R., Nielsen, P.H., Adrian, L., Seifert, J., von Bergen, M., Jehmlich, N., (2016):
    Proteomic dataset of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor
    Data in Brief 7 , 253 - 256
    Volltext (URL)
  • Schmidt, J.R., Kliemt, S., Preissler, C., Moeller, S., von Bergen, M., Hempel, U., Kalkhof, S., (2016):
    Osteoblast-released matrix vesicles, regulation of activity and composition by sulfated and non-sulfated glycosaminoglycans
    Mol. Cell. Proteomics 15 , 558 - 572
    Volltext (URL)
  • Schütze, N., Trojandt, S., Kuhn, S., Tomm, J.M., von Bergen, M., Simon, J.C., Polte, T., (2016):
    Allergen-induced IL-6 regulates IL-9/IL-17A balance in CD4+ T cells in allergic airway inflammation
    J. Immunol. 197 (7), 2653 - 2664
    Volltext (URL)
  • Starke, R., Keller, A., Jehmlich, N., Vogt, C., Richnow, H.H., Kleinsteuber, S., von Bergen, M., Seifert, J., (2016):
    Pulsed 13C2-acetate protein-SIP unveils Epsilonproteobacteria as dominant acetate utilizers in a sulfate-reducing microbial community mineralizing benzene
    Microb. Ecol. 71 (4), 901 - 911
    Volltext (URL)
  • Starke, R., Kermer, R., Ullmann-Zeunert, L., Baldwin, I.T., Seifert, J., Bastida, F., von Bergen, M., Jehmlich, N., (2016):
    Bacteria dominate the short-term assimilation of plant-derived N in soil
    Soil Biol. Biochem. 96 , 30 - 38
    Volltext (URL)
  • Tautenhahn, H.-M., Brückner, S., Baumann, S., Winkler, S., Otto, W., von Bergen, M., Bartels, M., Christ, B., (2016):
    Attenuation of postoperative acute liver failure by mesenchymal stem cell treatment due to metabolic implications
    Ann. Surg. 263 (3), 546 - 556
    Volltext (URL)
  • Teumer, A., Qi, Q., Nethander, M., Aschard, H., Bandinelli, S., Beekman, M., Berndt, S.I., Bidlingmaier, M., Broer, L., Cappola, A., Ceda, G.P., Chanock, S., Chen, M.-H., Chen, T.C., Chen, Y.-D.I., Chung, J., Del Greco Miglianico, F., Eriksson, J., Ferrucci, L., Friedrich, N., Gnewuch, C., Goodarzi, M.O., Grarup, N., Guo, T., Hammer, E., Hayes, R.B., Hicks, A.A., Hofman, A., Houwing-Duistermaat, J.J., Hu, F., Hunter, D.J., Husemoen, L.L., Isaacs, A., Jacobs, K.B., Janssen, J.A.M.J.L., Jansson, J.-O., Jehmlich, N., Johnson, S., Juul, A., Karlsson, M., Kilpelainen, T.O., Kovacs, P., Kraft, P., Li, C., Linneberg, A., Liu, Y., Loos, R.J.F., Lorentzon, M., Lu, Y., Maggio, M., Magi, R., Meigs, J., Mellström, D., Nauck, M., Newman, A.B., Pollak, M.N., Pramstaller, P.P., Prokopenko, I., Psaty, B.M., Reincke, M., Rimm, R.B., Rotter, J.I., Saint Pierre, A., Schurmann, C., Seshadri, S., Sjögren, K., Slagboom, P.E., Strickler, H.D., Stumvoll, M., Suh, Y., Sun, Q., Zhang, C., Svensson, J., Tanaka, T., Tare, A., Tönjes, A., Uh, H.-W., van Duijn, C., van Heemst, D., Vandenput, L., Vasan, R.S., Völker, U., Willems, S.M., Ohlsson, C., Wallaschofski, H., Kaplan, R.C., (2016):
    Genomewide meta-analysis identifies loci associated with IGF-I and IGFBP-3 levels with impact on age-related traits
    Aging Cell 15 (5), 811 - 824
    Volltext (URL)
  • Tiedt, O., Mergelsberg, M., Boll, K., Müller, M., Adrian, L., Jehmlich, N., von Bergen, M., Boll, M., (2016):
    ATP-dependent C–F bond cleavage allows the complete degradation of 4-fluoroaromatics without oxygen
    mBio 7 (4), e00990-16
    Volltext (URL)
  • Trump, S., Bieg, M., Gu, Z., Thürmann, L., Bauer, T., Bauer, M., Ishaque, N., Röder, S., Gu, L., Herberth, G., Lawerenz, C., Borte, M., Schlesner, M., Plass, C., Diessl, N., Eszlinger, M., Mücke, O., Elvers, H.-D., Wissenbach, D.K., von Bergen, M., Herrmann, C., Weichenhan, D., Wright, R.J., Lehmann, I., Eils, R., (2016):
    Prenatal maternal stress and wheeze in children: novel insights into epigenetic regulation
    Sci. Rep. 6 , art. 28616
    Volltext (URL)
  • Vorreiter, F., Richter, S., Peter, M., Baumann, S., von Bergen, M., Tomm, J.M., (2016):
    Comparison and optimization of methods for the simultaneous extraction of DNA, RNA, proteins, and metabolites
    Anal. Biochem. 508 , 25 - 33
    Volltext (URL)
  • Warnke, M., Jung, T., Dermer, J., Hipp, K., Jehmlich, N., von Bergen, M., Ferlaino, S., Fries, A., Müller, M., Boll, M., (2016):
    25-hydroxyvitamin D3 synthesis by enzymatic steroid side-chain hydroxylation with water
    Angew. Chem.-Int. Edit. 55 (5), 1881 - 1884
    Volltext (URL)
  • Winkler, S., Kalkhof, S., Brückner, S., Hempel, M., Baumann, S., von Bergen, M., Christ, B., (2016):
    Identification of molecular pathways for stem cell therapy of non-alcoholic steatohepatitis in an immunodeficient mouse model
    J. Hepatol. 64 (2 (Suppl.)), S683
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  • Wissenbach, D.K., Oliphant, K., Rolle-Kampczyk, U., Yen, S., Höke, H., Baumann, S., Haange, S.B., Verdu, E.F., Allen-Vercoe, E., von Bergen, M., (2016):
    Optimization of metabolomics of defined in vitro gut microbial ecosystems
    Int. J. Med. Microbiol. 306 (5), 280 - 289
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  • Wissenbach, D.K., Winkler, B., Otto, W., Kohajda, T., Roeder, S., Müller, A., Hoeke, H., Matysik, S., Schlink, U., Borte, M., Herbarth, O., Lehmann, I., von Bergen, M., (2016):
    Long-term indoor VOC concentrations assessment a trend analysis of distribution, disposition, and personal exposure in cohort study samples
    Air Qual. Atmos. Health 9 (8), 941 - 950
    Volltext (URL)
  • Wohlleben, W., Driessen, M.D., Raesch, S., Schaefer, U.F., Schulze, C., von Vacano, B., Vennemann, A., Wiemann, M., Ruge, C.A., Platsch, H., Mues, S., Ossig, R., Tomm, J.M., Schnekenburger, J., Kuhlbusch, T.A.J., Luch, A., Lehr, C.-M., Haase, A., (2016):
    Influence of agglomeration and specific lung lining lipid/protein interaction on short-term inhalation toxicity
    Nanotoxicology 10 (7), 970 - 980
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2015 (39)

  • Ahrens, V.M., Kostelnik, K.B., Rennert, R., Böhme, D., Kalkhof, S., Kosel, D., Weber, L., von Bergen, M., Beck-Sickinger, A.G., (2015):
    A cleavable cytolysin–neuropeptide Y bioconjugate enables specific drug delivery and demonstrates intracellular mode of action
    J. Control. Release 209 , 170 - 178
    Volltext (URL)
  • Bargiela, R., Herbst, F.-A., Martínez-Martínez, M., Seifert, J., Rojo, D., Cappello, S., Genovese, M., Crisafi, F., Denaro, R., Chernikova, T.N., Barbas, C., von Bergen, M., Yakimov, M.M., Ferrer, M., Golyshin, P.N., (2015):
    Metaproteomics and metabolomics analyses of chronically petroleum-polluted sites reveal the importance of general anaerobic processes uncoupled with degradation
    Proteomics 15 (20), 3508 - 3520
    Volltext (URL)
  • Bastida, F., García, C., von Bergen, M., Moreno, J.L., Richnow, H.H., Jehmlich, N., (2015):
    Deforestation fosters bacterial diversity and the cyanobacterial community responsible for carbon fixation processes under semiarid climate: a metaproteomics study
    Appl. Soil Ecol. 93 , 65 - 67
    Volltext (URL)
  • Beyer, A., Baumann, S., Scherz, G., Stahl, J., von Bergen, M., Friese, A., Roesler, U., Kietzmann, M., Honscha, W., (2015):
    Effects of ceftiofur treatment on the susceptibility of commensal porcine E.coli – comparison between treated and untreated animals housed in the same stable
    BMC Vet. Res. 11 , art. 265
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  • Brückner, S., Tautenhahn, H.-M., Baumann, S., Winkler, S., Bartels, M., von Bergen, M., Christ, B., (2015):
    Mesenchymal stem cells (MSC) prevent liver failure after huge liver resection in rat
    Transplantation 99 (7S), 267
    Volltext (URL)
  • Daims, H., Lebedeva, E.V., Pjevac, P., Han, P., Herbold, C., Albertsen, M., Jehmlich, N., Palatinszky, M., Vierheilig, J., Bulaev, A., Kirkegaard, R.H., von Bergen, M., Rattei, T., Bendinger, B., Nielsen, P.H., Wagner, M., (2015):
    Complete nitrification by Nitrospira bacteria
    Nature 528 (7583), 504 - 509
    Volltext (URL)
  • Goris, T., Schiffmann, C.L., Gadkari, J., Schubert, T., Seifert, J., Jehmlich, N., von Bergen, M., Diekert, G., (2015):
    Proteomics of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates
    Sci. Rep. 5 , art. 13794
    Volltext (URL)
  • Grob, C., Taubert, M., Howat, A.M., Burns, O.J., Dixon, J.L., Richnow, H.H., Jehmlich, N., von Bergen, M., Chen, Y., Murrell, J.C., (2015):
    Combining metagenomics with metaproteomics and stable isotope probing reveals metabolic pathways used by a naturally occurring marine methylotroph
    Environ. Microbiol. 17 (10), 4007 - 4018
    Volltext (URL)
  • Halwachs, S., Mahnke, H., Ballent, M., Baumann, S., von Bergen, M., Viviani, P., Lanusse, C., Honscha, W., Lifschitz, A., (2015):
    ABCG2-mediated transport of anthelmintic drugs in the mammary gland of dairy cows
    J. Vet. Pharmacol. Ther. 38 (S1), 43 - 44
    Volltext (URL)
  • Hartwig, S., Thomas, C., Krumova, N., Quitzke, V., Türkowsky, D., Jehmlich, N., Adrian, L., Sawers, R.G., (2015):
    Heterologous complementation studies in Escherichia coli with the Hyp accessory protein machinery from Chloroflexi provide insight into [NiFe]-hydrogenase large subunit recognition by the HypC protein family
    Microbiology-(UK) 161 (11), 2204 - 2219
    Volltext (URL)
  • Herberth, G., Offenberg, K., Rolle-Kampczyk, U., Bauer, M., Otto, W., Röder, S., Grützmann, K., Sack, E., Simon, J.-C., Borte, M., von Bergen, M., Lehmann, I., (2015):
    Endogenous metabolites and inflammasome activity in early childhood and links to respiratory diseases
    J. Allergy Clin. Immunol. 136 (2), 495 - 497
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  • Hoeke, H., Roeder, S., Bertsche, T., Lehmann, I., Borte, M., von Bergen, M., Wissenbach, D.K., (2015):
    Monitoring of drug intake during pregnancy by questionnaires and LC-MS/MS drug urine screening: evaluation of both monitoring methods
    Drug Test. Anal. 7 (8), 695 - 702
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  • Hofmann, T., Fischer, A.W., Meiler, J., Kalkhof, S., (2015):
    Protein structure prediction guided by crosslinking restraints – A systematic evaluation of the impact of the crosslinking spacer length
    Methods 89 , 79 - 90
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  • Hofmann, T., Samsonov, S.A., Pichert, A., Lemmnitzer, K., Schiller, J., Huster, D., Pisabarro, M.T., von Bergen, M., Kalkhof, S., (2015):
    Structural analysis of the interleukin-8/glycosaminoglycan interactions by amide hydrogen/deuterium exchange mass spectrometry
    Methods 89 , 45 - 53
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  • Hoth, N., Gniese, C., Rakoczy, J., Weber, A., Kümmel, S., Reichel, S., Freese, C., Hache, M., Kassahun, A., Schulz, A., Fischer, H., Mühling, M., Starke, R., Kahnt, R., Vogt, C., Richnow, H.-H., Krüger, M., Schippers, A., Schlömann, M., (2015):
    CO2BioPerm — influence of bio-geochemical CO2-transformation processes on the long-term permeability
    In: Liebscher, A., Münch, U., (eds.)
    Geological Storage of CO2 – Long Term Security Aspects. GEOTECHNOLOGIEN Science Report No. 22
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    Springer, Berlin, Heidelberg, p. 73 - 96
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  • Jouy, F., Müller, S.A., Wagner, J., Otto, W., von Bergen, M., Tomm, J.M., (2015):
    Integration of conventional quantitative and phospho-proteomics reveals new elements in activated Jurkat T-cell receptor pathway maintenance
    Proteomics 15 (1), 25 - 33
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  • Kalkhof, S., Dautel, F., Loguercio, S., Baumann, S., Trump, S., Jungnickel, H., Otto, W., Rudzok, S., Potratz, S., Luch, A., Lehmann, I., Beyer, A., von Bergen, M., (2015):
    Pathway and time-resolved benzo[a]pyrene toxicity on Hepa1c1c7 cells at toxic and subtoxic exposure
    J. Proteome Res. 14 (1), 164 - 182
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  • Keller, A.H., Schleinitz, K.M., Starke, R., Bertilsson, S., Vogt, C., Kleinsteuber, S., (2015):
    Metagenome-based metabolic reconstruction revealsthe ecophysiological function of Epsilonproteobacteria in a hydrocarbon-contaminated sulfidic aquifer
    Frontiers in Microbiology 6 , art. 1396
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  • Kirsten, H., Al-Hasani, H., Holdt, L., Gross, A., Beutner, F., Krohn, K., Ahnert, P., Burkhardt, R., Reiche, K., Hackermüller, J., Löffler, M., Teupser, D., Thiery, J., Scholz, M., (2015):
    Dissecting the genetics of the human transcriptome identifies novel trait-related trans-eQTLs and corroborates the regulatory relevance of non-protein coding loci
    Hum. Mol. Genet. 24 (16), 4746 - 4763
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  • Klöting, N., Hesselbarth, N., Gericke, M., Kunath, A., Biemann, R., Chakaroun, R., Kosacka, J., Kovacs, P., Kern, M., Stumvoll, M., Fischer, B., Rolle-Kampczyk, U., Feltens, R., Otto, W., Wissenbach, D.K., von Bergen, M., Blüher, M., (2015):
    Di-(2-ethylhexyl)-phthalate (DEHP) causes impaired adipocyte function and alters serum metabolites
    PLOS One 10 (12), e0143190
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  • Kostelnik, K.B., Els-Heindl, S., Klöting, N., Baumann, S., von Bergen, M., Beck-Sickinger, A.G., (2015):
    High metabolic in vivo stability and bioavailability of a palmitoylated ghrelin receptor ligand assessed by mass spectrometry
    Bioorg. Med. Chem. 23 (14), 3925 - 3932
    Volltext (URL)
  • Kümmel, S., Herbst, F.-A., Bahr, A., Duarte, M., Pieper, D.H., Jehmlich, N., Seifert, J., von Bergen, M., Bombach, P., Richnow, H.H., Vogt, C., (2015):
    Anaerobic naphthalene degradation by sulfate-reducing Desulfobacteraceae from various anoxic aquifers
    FEMS Microbiol. Ecol. 91 (3), fiv006
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  • Kurteva-Yaneva, N., Zahn, M., Weichler, M.-T., Starke, R., Harms, H., Müller, R.H., Sträter, N., Rohwerder, T., (2015):
    Structural basis of the stereospecificity of bacterial B12-dependent 2-hydroxyisobutyryl-CoA mutase
    J. Biol. Chem. 290 , 9727 - 9737
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  • Linton, S.M., Cameron, M.S., Gray, M.C., Donald, J.A., Saborowski, R., von Bergen, M., Tomm, J.M., Allardyce, B.J., (2015):
    A glycosyl hydrolase family 16 gene is responsible for the endogenous production of β-1,3-glucanases within decapod crustaceans
    Gene 569 (2), 203 - 217
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  • Martínez-Lavanchy, P.M., Chen, Z., Lünsmann, V., Marin-Cevada, V., Vilchez-Vargas, R., Pieper, D.H., Reiche, N., Kappelmeyer, U., Imparato, V., Junca, H., Nijenhuis, I., Müller, J.A., Kuschk, P., Heipieper, H.J., (2015):
    Microbial toluene removal in hypoxic model constructed wetlands occurs predominantly via the ring monooxygenation pathway
    Appl. Environ. Microb. 81 (18), 6241 - 6252
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  • Müller, A., (2015):
    Gesundheitsrisiko Schimmelpilze
    Leipzigs Wandel im Spiegel der Stadtforschung am UFZ
    Helmholtz-Zentrum für Umweltforschung - UFZ, Leipzig, S. 18 - 19
  • Müller, S.A., Pernitzsch, S.R., Haange, S.-B., Uetz, P., von Bergen, M., Sharma, C.M., Kalkhof, S., (2015):
    Stable isotope labeling by amino acids in cell culture based proteomics reveals differences in protein abundances between spiral and coccoid forms of the gastric pathogen Helicobacter pylori
    J. Proteomics 126 , 34 - 45
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  • Nitsche, A., Rose, D., Fasold, M., Reiche, K., Stadler, P.F., (2015):
    Comparison of splice sites reveals that long noncoding RNAs are evolutionarily well conserved
    RNA 21 (5), 801 - 812
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  • Pagani, M., Rockstroh, M., Schuster, M., Rossetti, G., Moro, M., Crosti, M., Tomm, J.M., (2015):
    Reference proteome of highly purified human Th1 cells reveals strong effects on metabolism and protein ubiquitination upon differentiation
    Proteomics 15 (21), 3644 - 3647
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  • Palatinszky, M., Herbold, C., Jehmlich, N., Pogoda, M., Han, P., von Bergen, M., Lagkouvardos, I., Karst, S.M., Galushko, A., Koch, H., Berry, D., Daims, H., Wagner, M., (2015):
    Cyanate as an energy source for nitrifiers
    Nature 524 , 105 - 108
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  • Pöritz, M., Schiffmann, C.L., Hause, G., Heinemann, U., Seifert, J., Jehmlich, N., von Bergen, M., Nijenhuis, I., Lechner, U., (2015):
    Dehalococcoides mccartyi strain DCMB5 respires a broad spectrum of chlorinated aromatic compounds
    Appl. Environ. Microb. 81 (2), 587 - 596
    Volltext (URL)
  • Remane, D., Grunwald, S., Hoeke, H., Mueller, A., Roeder, S., von Bergen, M., Wissenbach, D.K., (2015):
    Validation of a multi-analyte HPLC-DAD method for determination of uric acid, creatinine, homovanillic acid, niacinamide, hippuric acid, indole-3-acetic acid and 2-methylhippuric acid in human urine
    J. Chromatogr. B 998–999 , 40 - 44
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  • Sachsenberg, T., Herbst, F.-A., Taubert, M., Kermer, R., Jehmlich, N., von Bergen, M., Seifert, J., Kohlbacher, O., (2015):
    MetaProSIP: Automated inference of stable isotope incorporation rates in proteins for functional metaproteomics
    J. Proteome Res. 14 (2), 619 - 627
    Volltext (URL)
  • Schaubeck, M., Clavel, T., Lagkouvardos, M., Calasan, J., Haange, S.B., Jehmlich, N., von Bergen, M., Basic, M., Bleich, A., Haller, D., (2015):
    Transmissive Crohn's disease-like ileitis is caused by functional dysbiosis in the intestinal microbiota independent of inflammation-driven Paneth cell failure
    J. Crohns Colitis 9 (Suppl. 1), S1 - S1
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  • Scherz, G., Beyer, A., Stahl, J., Roesler, U., Friese, A., von Bergen, M., Kietzmann, M., Honscha, W., (2015):
    Occurrence of cephalosporin resistant and ESBL-producing commensal Escherichia coli in the microbiota from swine treated with ceftiofur
    J. Vet. Pharmacol. Ther. 38 (S1), 92 - 93
    Volltext (URL)
  • Seyhan, D., Jehmlich, N., von Bergen, M., Fersch, J., Rother, M., (2015):
    Selenocysteine-independent suppression of UGA codons in the archaeon Methanococcus maripaludis
    Biochim. Biophys. Acta-Gen. Subj. 1850 , 2385 - 2392
    Volltext (URL)
  • Tobalina, L., Bargiela, R., Pey, J., Herbst, F.-A., Lores, I., Rojo, D., Barbas, C., Peláez, A.I., Sánchez, J., von Bergen, M., Seifert, J., Ferrer, M., Planes, F.J., (2015):
    Context-specific metabolic network reconstruction of a naphthalene-degrading bacterial community guided by metaproteomic data
    Bioinformatics 31 (11), 1771 - 1779
    Volltext (URL)
  • Winkler, S., Kalkhof, S., Hempel, M., Brückner, S., von Bergen, M., Christ, B., (2015):
    Validierung des Modells der durch eine Methionin-Cholin-freie Diät induzierten Nicht-alkoholischer Steatohepatitis (NASH) durch Proteomanalysen
    Zeitschrift für Gastroenterologie 53 , KG090
    Volltext (URL)
  • Zanker, D., Otto, W., Chen, W., von Bergen, M., Tomm, J., (2015):
    Compartment resolved reference proteome map from highly purified naïve, activated, effector, and memory CD8+ murine immune cells
    Proteomics 15 (11), 1808 - 1812
    Volltext (URL)
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2014 (32)

  • Arnold, C., Externbrink, F., Hackermüller, J., Reiche, K., (2014):
    CEM-Designer: design of custom expression microarrays in the post-ENCODE era
    J. Biotechnol. 189 , 154 - 156
    Volltext (URL)
  • Bastida, F., Jehmlich, N., Ondoño, S., von Bergen, M., García, C., Moreno, J.L., (2014):
    Characterization of the microbial community in biological soil crusts dominated by Fulgensia desertorum (Tomin) Poelt and Squamarina cartilaginea (With.) P. James and in the underlying soil
    Soil Biol. Biochem. 76 , 70 - 79
    Volltext (URL)
  • Baumann, S., Rockstroh, M., Bartel, J., Krumsiek, J., Otto, W., Jungnickel, H., Potratz, S., Luch, A., Wilscher, E., Theis, F.J., von Bergen, M., Tomm, J.M., (2014):
    Subtoxic concentrations of benzo[a]pyrene induce metabolic changes and oxidative stress in non-activated and affect the mTOR pathway in activated Jurkat T cells
    Journal of Integrated OMICS 4 (1), 11 - 20
    Volltext (URL)
  • Bozinovski, D., Taubert, M., Kleinsteuber, S., Richnow, H.-H., von Bergen, M., Vogt, C., Seifert, J., (2014):
    Metaproteogenomic analysis of a sulfate-reducing enrichment culture reveals genomic organization of key enzymes in the m-xylene degradation pathway and metabolic activity of proteobacteria
    Syst. Appl. Microbiol. 37 (7), 488 - 501
    Volltext (URL)
  • Colman Lerner, J.E., Kohajda, T., Aguilar, M.E., Massolo, L.A., Sánchez, E.Y., Porta, A.A., Opitz, P., Wichmann, G., Herbarth, O., Mueller, A., (2014):
    Improvement of health risk factors after reduction of VOC concentrations in industrial and urban areas
    Environ. Sci. Pollut. Res. 21 (16), 9676 - 9688
    Volltext (URL)
  • Franck, U., Weller, A., Röder, S.W., Herberth, G., Junge, K.M., Kohajda, T., von Bergen, M., Rolle-Kampczyk, U., Diez, U., Borte, M., Lehmann, I., (2014):
    Prenatal VOC exposure and redecoration are related to wheezing in early infancy
    Environ. Int. 73 , 393 - 401
    Volltext (URL)
  • Gasch, M., Goroll, T., Bauer, M., Hinz, D., Schütze, N., Polte, T., Kesper, D., Simon, J.-C., Hackermüller, J., Lehmann, I., Herberth, G., (2014):
    Generation of IL-8 and IL-9 producing CD4+ T cells is affected by Th17 polarizing conditions and AHR ligands
    Mediat. Inflamm. , 182549
    Volltext (URL)
  • Hackermüller, J., Reiche, K., Otto, C., Hösler, N., Blumert, C., Brocke-Heidrich, K., Böhlig, L., Nitsche, A., Kasack, K., Ahnert, P., Krupp, W., Engeland, K., Stadler, P.F., Horn, F., (2014):
    Cell cycle, oncogenic and tumor suppressor pathways regulate numerous long and macro non-protein coding RNAs
    Genome Biol. 15 (3), R48
    Volltext (URL)
  • Herberth, G., Bauer, M., Gasch, M., Hinz, D., Röder, S., Olek, S., Kohajda, T., Rolle-Kampczyk, U., von Bergen, M., Sack, U., Borte, M., Lehmann, I., (2014):
    Maternal and cord blood miR-223 expression associates with prenatal tobacco smoke exposure and low regulatory T-cell numbers
    J. Allergy Clin. Immunol. 133 (2), 543 - 550.e4
    Volltext (URL)
  • Hoffmann, S., Otto, C., Doose, G., Tanzer, A., Langenberger, D., Christ, S., Kunz, M., Holdt, L.M., Teupser, D., Hackermüller, J., Stadler, P.F., (2014):
    A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection
    Genome Biol. 15 (2), R34
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  • Imhasly, S., Naegeli, H., Baumann, S., von Bergen, M., Luch, A., Jungnickel, H., Potratz, S., Gerspach, C., (2014):
    Metabolomic biomarkers correlating with hepatic lipidosis in dairy cows
    BMC Vet. Res. 10 , art. 122
    Volltext (URL)
  • Jungandreas, A., Schellenberger Costa, B., Jakob, T., von Bergen, M., Baumann, S., Wilhelm, C., (2014):
    The acclimation of Phaeodactylum tricornutum to blue and red light does not influence the photosynthetic light reaction but strongly disturbs the carbon allocation pattern
    PLOS One 9 (8), e99727
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  • Junge, K.M., Hörnig, F., Herberth, G., Röder, S., Kohajda, T., Rolle-Kampczyk, U., von Bergen, M., Borte, M., Simon, J.-C., Heroux, D., Denburg, J.A., Lehmann, I., (2014):
    The LINA cohort: cord blood eosinophil/basophil progenitors predict respiratory outcomes in early infancy
    Clin. Immunol. 152 (1-2), 68 - 76
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  • Jungnickel, H., Luch, A., Potratz, S., von Bergen, M., Baumann, S., Tarnow, P., (2014):
    Identification of lipidomic biomarkers for coexposure to subtoxic doses of benzo[a]pyrene and cadmium: the toxicological cascade biomarker approach
    Environ. Sci. Technol. 48 (17), 10423 - 10431
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  • Kalkhof, S., Förster, Y., Schmidt, J., Schulz, M.C., Baumann, S., Weißflog, A., Gao, W., Hempel, U., Eckelt, U., Rammelt, S., von Bergen, M., (2014):
    Proteomics and metabolomics for in situ monitoring of wound healing
    Biomed Res. Int. 2014 , art. 934848
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  • Kleindienst, S., Herbst, F.-A., Stagars, M., von Netzer, F., von Bergen, M., Seifert, J., Peplies, J., Amann, R., Musat, F., Lueders, T., Knittel, K., (2014):
    Diverse sulfate-reducing bacteria of the Desulfosarcina/Desulfococcus clade are the key alkane degraders at marine seeps
    ISME J. 8 (10), 2029 - 2044
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  • Lieder, S., Jahn, M., Seifert, J., von Bergen, M., Müller, S., Takors, R., (2014):
    Subpopulation-proteomics reveal growth rate, but not cell cycling, as a major impact on protein composition in Pseudomonas putida KT2440
    AMB Express 4 , art. 71
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  • Marozava, S., Röling, W.F.M., Seifert, J., Küffner, R., von Bergen, M., Meckenstock, R.U., (2014):
    Physiology of Geobacter metallireducens under excess and limitation of electron donors. Part II. Mimicking environmental conditions during cultivation in retentostats
    Syst. Appl. Microbiol. 37 (4), 287 - 295
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  • Marozava, S., Röling, W.F.M., Seifert, J., Küffner, R., von Bergen, M., Meckenstock, R.U., (2014):
    Physiology of Geobacter metallireducens under excess and limitation of electron donors. Part I. Batch cultivation with excess of carbon sources
    Syst. Appl. Microbiol. 37 (4), 277 - 286
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  • Mussotter, F., Haase, A., Tomm, J.M., El Ali, Z., Kerdine-Römer, S., Pallardy, M., von Bergen, M., Luch, A., (2014):
    A proteomics approach to elucidate the role of Nrf2 in primary bone-marrow-derived dendritic cells of mice upon activation by contact allergens
    Toxicol. Lett. 229 (Suppl.), S203
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  • Oberbach, A., Neuhaus, J., Jehmlich, N., Schlichting, N., Heinrich, M., Kullnick, Y., Mohr, F.-W., Kugler, J., Baumann, S., Völker, U., Adams, V., (2014):
    A global proteome approach in uric acid stimulated human aortic endothelial cells revealed regulation of multiple major cellular pathways
    Int. J. Cardiol. 176 (3), 746 - 752
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  • Oberbach, A., Schlichting, N., Neuhaus, J., Kullnick, Y., Lehmann, S., Heinrich, M., Dietrich, A., Mohr, F.W., von Bergen, M., Baumann, S., (2014):
    Establishing a reliable multiple reaction monitoring-based method for the quantification of obesity-associated comorbidities in serum and adipose tissue requires intensive clinical validation
    J. Proteome Res. 13 (12), 5784 - 5800
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  • Reiche, K., Kasack, K., Schreiber, S., Lüders, T., Due, E.U., Naume, B., Riis, M., Kristensen, VN, Horn, F., Børresen-Dale, A.L., Hackermüller, J., Baumbusch, L.O., (2014):
    Long non-coding RNAs differentially expressed between normal versus primary breast tumor tissues disclose converse changes to breast cancer-related protein-coding genes
    PLOS One 9 (9), e106076
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  • Rivarola-Duarte, L., Otto, C., Jühling, F., Schreiber, S., Bedulina, D.S., Jakob, L., Gurkov, A., Axenov-Gribanov, D., Sahyoun, A.H., Lucassen, M., Hackermüller, J., Hoffmann, S., Sartoris, F., Pörtner, H.-O., Timofeyev, M., Luckenbach, T., Stadler, P.F., (2014):
    A first glimpse at the genome of the Baikalian amphipod Eulimnogammarus verrucosus
    J. Exp. Zool. Part B 322 (3), 177 - 189
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  • Rösch, C., Kohajda, T., Röder, S., von Bergen, M., Schlink, U., (2014):
    Relationship between sources and patterns of VOCs in indoor air
    Atmos. Pollut. Res. 5 (1), 129 - 137
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  • Scheublin, T.R., Deusch, S., Moreno-Forero, S.K., Müller, J.A., van der Meer, J.R., Leveau, J.H.J., (2014):
    Transcriptional profiling of Gram-positive Arthrobacter in the phyllosphere: induction of pollutant degradation genes by natural plant phenolic compounds
    Environ. Microbiol. 16 (7), 2212 - 2225
    Volltext (URL)
  • Schiffmann, C., Hansen, R., Baumann, S., Kublik, A., Nielsen, P.H., Adrian, L., von Bergen, M., Jehmlich, N., Seifert, J., (2014):
    Comparison of targeted peptide quantification assays for reductive dehalogenases by selective reaction monitoring (SRM) and precursor reaction monitoring (PRM)
    Anal. Bioanal. Chem. 406 (1), 283 - 291
    Volltext (URL)
  • Schiffmann, C.L., Jehmlich, N., Otto, W., Hansen, R., Nielsen, P.H., Adrian, L., Seifert, J., von Bergen-Tomm, M., (2014):
    Proteome profile and proteogenomics of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor
    J. Proteomics 98 , 59 - 64
    Volltext (URL)
  • Stegmaier, P., Jehmlich, N., Golatowski, C., Gesell Salazar, M., Völker, U., Henke, M., (2014):
    Identification of differences in the whole saliva baseline proteome profile that are associated with development of oral mucositis in head and neck cancer patients during treatment with IMRT
    Strahlenther. Onkol. 190 (Suppl. 1), 142
    Volltext (URL)
  • Stegmaier, P., Jehmlich, N., Golatowski, C., Gesell Salazar, M., Völker, U., Henke, M., (2014):
    Identification of differences in the whole saliva baseline proteome profile that are associated with development of oral mucositis in head and neck cancer patients during treatment with IMRT
    Int. J. Radiat. Oncol. Biol. Phys. 90 (Suppl. 1), S547
    Volltext (URL)
  • Torres, I.F., Bastida, F., Hernández, T., Bombach, P., Richnow, H.H., García, C., (2014):
    The role of lignin and cellulose in the carbon-cycling of degraded soils under semiarid climate and their relation to microbial biomass
    Soil Biol. Biochem. 75 , 152 - 160
    Volltext (URL)
  • Uhlmann, K., Gibb, S., Kalkhof, S., Arroyo-Abad, U., Schulz, C., Hoffmann, B., Stubbins, F., Carpenter, S., Beer, M., von Bergen, M., Feltens, R., (2014):
    Species determination of Culicoides biting midges via peptide profiling using matrix-assisted laser desorption ionization mass spectrometry
    Parasites Vectors 7 , 392
    Volltext (URL)
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2013 (37)

  • Baumann, S., Kalkhof, S., Hackermüller, J., Otto, W., Tomm, J.M., Wissenbach, D.K., Rolle-Kampczyk, U., von Bergen, M., (2013):
    Requirements and perspectives for integrating metabolomics with other omics data
    Current Metabolomics 1 (1), 15 - 27
    Volltext (URL)
  • Blumert, C., Kalkhof, S., Brocke-Heidrich, K., Kohajda, T., von Bergen, M., Horn, F., (2013):
    Analysis of the STAT3 interactome using in-situ biotinylation and SILAC
    J. Proteomics 94 , 370 - 386
    Volltext (URL)
  • Bodelier, P.L.E., Meima-Franke, M., Hordijk, C.A., Steenbergh, A.K., Hefting, M.E., Bodrossy, L., von Bergen, M., Seifert, J., (2013):
    Microbial minorities modulate methane consumption through niche partitioning
    ISME J. 7 (11), 2214 - 2228
    Volltext (URL)
  • Boll, K., Reiche, K., Kasack, K., Mörbt, N., Kretzschmar, A.K., Tomm, J.M., Verhaegh, G., Schalken, J., von Bergen, M., Horn, F., Hackermüller, J., (2013):
    MiR-130a, miR-203 and miR-205 jointly repress key oncogenic pathways and are downregulated in prostate carcinoma
    Oncogene 32 , 277 - 285
    Volltext (URL)
  • Eberlein, C., Estelmann, S., Seifert, J., von Bergen, M., Müller, M., Meckenstock, R.U., Boll, M., (2013):
    Identification and characterization of 2-naphthoyl-coenzyme A reductase, the prototype of a novel class of dearomatizing reductases
    Mol. Microbiol. 88 (5), 1032 - 1039
    Volltext (URL)
  • Ferrer, M., Ruiz, A., Lanza, F., Haange, S.-B., Oberbach, A., Till, H., Bargiela, R., Campoy, C., Segura, M.T., Richter, M., von Bergen, M., Seifert, J., Suarez, A., (2013):
    Microbiota from the distal guts of lean and obese adolescents exhibit partial functional redundancy besides clear differences in community structure
    Environ. Microbiol. 15 (1), 211 - 226
    Volltext (URL)
  • Guazzaroni, M.-E., Herbst, F.-A., Lores, I., Tamames, J., Peláez, A.I., López-Cortés, N., Alcaide, M., del Pozo, M.V., Vieites, J.M., von Bergen, M., Gallego, J.L.R., Bargiela, R., López-López, A., Pieper, D.H., Rosselló-Móra, R., Sánchez, J., Seifert, J., Ferrer, M., (2013):
    Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation
    ISME J. 7 (1), 122 - 136
    Volltext (URL)
  • Herberth, G., Bauer, M., Gasch, M., Hinz, D., Röder, S., Olek, S., Kohajda, T., Rolle-Kampczyk, U., von Bergen-Tomm, M., Sack, U., Borte, M., Lehmann, I., (2013):
    Maternal and cord blood miR-223 expression associates with prenatal tobacco smoke exposure and with low Treg numbers
    Allergy 68 (Suppl. 97), 628 - 628
    Volltext (URL)
  • Herbst, F.-A., Bahr, A., Duarte, M., Pieper, D.H., Richnow, H.-H., von Bergen, M., Seifert, J., Bombach, P., (2013):
    Elucidation of in situ polycyclic aromatic hydrocarbon degradation by functional metaproteomics (protein-SIP)
    Proteomics 13 (18-19), 2910 - 2920
    Volltext (URL)
  • Herbst, F.-A., Taubert, M., Jehmlich, N., Behr, T., Schmidt, F., von Bergen, M., Seifert, J., (2013):
    Sulfur-34S stable isotope labeling of amino acids for quantification (SULAQ34) of proteomic changes in Pseudomonas fluorescens during naphthalene degradation
    Mol. Cell. Proteomics 12 (8), 2060 - 2069
    Volltext (URL)
  • Hessling, B., Bonn, F., Otto, A., Herbst, F.-A., Rappen, G.-M., Bernhardt, J., Hecker, M., Becher, D., (2013):
    Global proteome analysis of vancomycin stress in Staphylococcus aureus
    Int. J. Med. Microbiol. 303 (8), 624 - 634
    Volltext (URL)
  • Jahn, M., Seifert, J., Hübschmann, T., von Bergen, M., Harms, H., Müller, S., (2013):
    Comparison of preservation methods for bacterial cells in cytomics and proteomics
    Journal of Integrated OMICS 3 (1), 25 - 33
    Volltext (URL)
  • Jahn, M., Seifert, J., von Bergen, M., Schmid, A., Bühler, B., Müller, S., (2013):
    Subpopulation-proteomics in prokaryotic populations
    Curr. Opin. Biotechnol. 24 (1), 79 - 87
    Volltext (URL)
  • Jechalke, S., Franchini, A., Bastida, F., Bombach, P., Rosell, M., Seifert, J., von Bergen, M., Vogt, C., Richnow, H.H., (2013):
    Analysis of structure, function, and activity of a benzene-degrading microbial community
    FEMS Microbiol. Ecol. 85 (1), 14 - 26
    Volltext (URL)
  • Kliemt, S., Lange, C., Otto, W., Hintze, V., Möller, S., von Bergen, M., Hempel, U., Kalkhof, S., (2013):
    Sulfated hyaluronan containing collagen matrices enhance cell-matrix-interaction, endocytosis, and osteogenic differentiation of human mesenchymal stromal cells
    J. Proteome Res. 12 (1), 378 - 389
    Volltext (URL)
  • Kung, J.W., Seifert, J., von Bergen, M., Boll, M., (2013):
    Cyclohexanecarboxyl-coenzyme A (CoA) and cyclohex-1-ene-1-carboxyl-CoA dehydrogenases, two enzymes involved in the fermentation of benzoate and crotonate in Syntrophus aciditrophicus
    J. Bacteriol. 195 (14), 3193 - 3200
    Volltext (URL)
  • Leibeling, S., Maeß, M.B., Centler, F., Kleinsteuber, S., von Bergen, M., Thullner, M., Harms, H., Müller, R.H., (2013):
    Posttranslational oxidative modification of (R)-2-(2,4-dichlorophenoxy)propionate/α-ketoglutarate-dependent dioxygenases (RdpA) leads to improved degradation of 2,4-dichlorophenoxyacetate (2,4-D)
    Eng. Life Sci. 13 (3), 278 - 291
    Volltext (URL)
  • Markle, J.G.M., Frank, D.N., Mortin-Toth, S., Robertson, C.E., Feazel, L.M., Rolle-Kampczyk, U., von Bergen, M., McCoy, C.D., Macpherson, A.J., Danska, J.S., (2013):
    Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity
    Science 339 (6123 ), 1084 - 1088
    Volltext (URL)
  • Möbius, K., Nordsieck, K., Pichert, A., Samsonov, S.A., Thomas, L., Schiller, J., Kalkhof, S., Pisabarro, M.T., Beck-Sickinger, A.G., Huster, D., (2013):
    Investigation of lysine side chain interactions of interleukin-8 with heparin and other glycosaminoglycans studied by a methylation-NMR approach
    Glycobiology 23 (11), 1260 - 1269
    Volltext (URL)
  • Mueller, A., Schlink, U., Wichmann, G., Bauer, M., Graebsch, C., Schüürmann, G., Herbarth, O., (2013):
    Individual and combined effects of mycotoxins from typical indoor moulds
    Toxicol. Vitro 27 (6), 1970 - 1978
    Volltext (URL)
  • Müller, S.A., Findeiß, S., Pernitzsch, S.R., Wissenbach, D.K., Stadler, P.F., Hofacker, I.L., von Bergen, M., Kalkhof, S., (2013):
    Identification of new protein coding sequences and signal peptidase cleavage sites of Helicobacter pylori strain 26695 by proteogenomics
    J. Proteomics 86 , 27 - 42
    Volltext (URL)
  • Murugaiyan, J., Rockstroh, M., Wagner, J., Baumann, S., Schorsch, K., Trump, S., Lehmann, I., von Bergen, M., Tomm, J.M., (2013):
    Benzo[a]pyrene affects Jurkat T cells in the activated state via the antioxidant response element dependent Nrf2 pathway leading to decreased IL-2 secretion and redirecting glutamine metabolism
    Toxicol. Appl. Pharmacol. 269 (3), 307 - 316
    Volltext (URL)
  • Murugaiyan, J., Weise, C., von Bergen, M., Roesler, U., (2013):
    Two-dimensional proteome reference map of Prototheca zopfii revealed reduced metabolism and enhanced signal transduction as adaptation to an infectious life style
    Proteomics 13 (17), 2664 - 2669
    Volltext (URL)
  • Murugesan, K., Baumann, S., Wissenbach, D.K., Kliemt, S., Kalkhof, S., Otto, W., Mögel, I., Kohajda, T., von Bergen, M., Tomm, J.M., (2013):
    Subtoxic and toxic concentrations of benzene and toluene induce Nrf-2 mediated anti-oxidative stress response and affect the central carbon metabolism in lung epithelial cells A549
    Proteomics 13 (21), 3211 - 3221
    Volltext (URL)
  • Pérez-Cobas, A.E., Gosalbes, M.J., Friedrichs, A., Knecht, H., Artacho, A., Eismann, K., Otto, W., Rojo, D., Bargiela, R., von Bergen, M., Neulinger, S.C., Däumer, C., Heinsen, F.A., Latorre, A., Barbas, C., Seifert, J., Martins dos Santos, V., Ott, S.J., Ferrer, M., Moya, A., (2013):
    Gut microbiota disturbance during antibiotic therapy: a multi-omic approach
    Gut 62 , 1591 - 1601
    Volltext (URL)
  • Schipp, C.-J., Marco-Urrea, E., Kublik, A., Seifert, J., Adrian, L., (2013):
    Organic cofactors in the metabolism of Dehalococcoides mccartyi strains
    Philos. Trans. R. Soc. B-Biol. Sci. 368 (1616), 20120321
    Volltext (URL)
  • Seifert, J., Herbst, F.-A., Nielsen, P.H., Planes, F.J., Ferrer, M., von Bergen, M., (2013):
    Bioinformatic progress and applications in metaproteogenomics for bridging the gap between genomic sequences and metabolic functions in microbial communities
    Proteomics 13 (18-19), 2786 - 2804
    Volltext (URL)
  • Siegert, M., Taubert, M., Seifert, J., von Bergen-Tomm, M., Basen, M., Bastida, F., Gehre, M., Richnow, H.-H., Krüger, M., (2013):
    The nitrogen cycle in anaerobic methanotrophic mats of the Black Sea is linked to sulfate reduction and biomass decomposition
    FEMS Microbiol. Ecol. 86 (2), 231 - 245
    Volltext (URL)
  • Tang, S., Chan, W.W.M., Fletcher, K.E., Seifert, J., Liang, X., Löffler, F.E., Edwards, E.A., Adrian, L., (2013):
    Functional characterization of reductive dehalogenases using blue native polyacrylamide gel electrophoresis
    Appl. Environ. Microb. 79 (3), 974 - 981
    Volltext (URL)
  • Taubert, M., von Bergen-Tomm, M., Seifert, J., (2013):
    Limitations in detection of 15N incorporation by mass spectrometry in protein-based stable isotope probing (protein-SIP)
    Anal. Bioanal. Chem. 405 (12), 3989 - 3996
    Volltext (URL)
  • Tomm, J.M., Krause, C., Simon, J.C., Treudler, R., von Bergen, M., Averbeck, M., (2013):
    Pyruvate kinase and phosphopyruvate hydratase as novel IgE reactive proteins in prawn
    J. Invest. Allergol. Clin. Immunol. 23 (6), 443 - 445
  • Tomm, J.M., Otto, W., Servos, U., Bertram, B., von Bergen, M., Baumann, S., (2013):
    Starvation of Jurkat T cells causes metabolic switch from glycolysis to lipolysis as revealed by comprehensive GC-qMS
    Journal of Integrated OMICS 3 (1), 70 - 74
    Volltext (URL)
  • Tomm, J.M., van Do, T., Jende, C., Simon, J.C., Treudler, R., von Bergen, M., Averbeck, M., (2013):
    Identification of new potential allergens from Nile perch (Lates niloticus) and Cod (Gadus morhua)
    J. Invest. Allergol. Clin. Immunol. 23 (3), 159 - 167
  • von Bergen, M., Jehmlich, N., Taubert, M., Vogt, C., Bastida, F., Herbst, F.-A., Schmidt, F., Richnow, H.-H., Seifert, J., (2013):
    Insights from quantitative metaproteomics and protein-stable isotope probing into microbial ecology
    ISME J. 7 (10), 1877 - 1885
    Volltext (URL)
  • Weisse, K., Herberth, G., Röder, S., Borte, M., Heroux, D., Denburg, J., Lehmann, I., (2013):
    Eosinophil/basophil (Eo/B) progenitors in cord blood (CB) predict respiratory outcomes in early infancy
    Allergy 68 (Suppl. 97), 53 - 53
    Volltext (URL)
  • Weisse, K., Winkler, S., Hirche, F., Herberth, G., Hinz, D., Bauer, M., Röder, S., Rolle-Kampczyk, U., von Bergen, M., Olek, S., Richter, T., Diez, U., Borte, M., Stangl, G.I., Lehmann, I., (2013):
    Maternal and newborn vitamin D status and its impact on food allergy development in the German LINA cohort study
    Allergy 68 (2), 220 - 228
    Volltext (URL)
  • Will, S., Siebauer, M.F., Heyne, S., Engelhardt, J., Stadler, P.F., Reiche, K., Backofen, R., (2013):
    LocARNAscan: Incorporating thermodynamic stability in sequence and structure-based RNA homology search
    Algorithms Mol. Biol. 8 , art. 14
    Volltext (URL)
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2012 (35)

  • Abburi, R., Kalkhof, S., Oehme, R., Kiontke, A., Birkemeyer, C., (2012):
    Artifacts in amine analysis from anodic oxidation of organic solvents upon electrospray ionization for mass spectrometry
    Eur. J. Mass Spectrom. 18 (3), 301 - 312
    Volltext (URL)
  • Baumgarten, T., Sperling, S., Seifert, J., von Bergen, M., Steiniger, F., Wick, L.Y., Heipieper, H.J., (2012):
    Membrane vesicle formation as a multiple-stress response mechanism enhances Pseudomonas putida DOT-T1E cell surface hydrophobicity and biofilm formation
    Appl. Environ. Microb. 78 (17), 6217 - 6224
    Volltext (URL)
  • Blaschke, U., Eismann, K., Böhme, A., Paschke, A., Schüürmann, G., (2012):
    Structural alerts for the excess toxicity of acrylates, methacrylates, and propiolates derived from their short-term and long-term bacterial toxicity
    Chem. Res. Toxicol. 25 (1), 170 - 180
    Volltext (URL)
  • Bönisch, U., Böhme, A., Kohajda, T., Mögel, I., Schütze, N., von Bergen, M., Simon, J.C., Lehmann, I., Polte, T., (2012):
    Volatile organic compounds enhance allergic airway inflammation in an experimental mouse model
    PLoS One 7 (7), e39817
    Volltext (URL)
  • Bozinovski, D., Herrmann, S., Richnow, H.-H., von Bergen, M., Seifert, J., Vogt, C., (2012):
    Functional analysis of an anaerobic m-xylene-degrading enrichment culture using protein-based stable isotope probing
    FEMS Microbiol. Ecol. 81 (1), 134 - 144
    Volltext (URL)
  • Goettsch, C., Kliemt, S., Sinningen, K., von Bergen, M., Hofbauer, L.C., Kalkhof, S., (2012):
    Quantitative proteomics reveals novel functions of osteoclast-associated receptor in STAT signaling and cell adhesion in human endothelial cells
    J. Mol. Cell. Cardiol. 53 (6), 829 - 837
    Volltext (URL)
  • Gündel, U., Kalkhof, S., Zitzkat, D.P., von Bergen, M., Altenburger, R., Küster, E., (2012):
    Concentration-response concept in ecotoxicoproteomics: effects of different phenanthrene concentrations to the zebrafish (Danio rerio) embryo proteome
    Ecotox. Environ. Safe. 76 (1), 11 - 22
    Volltext (URL)
  • Haange, S.-B., Oberbach, A., Schlichting, N., Hugenholtz, F., Smidt, H., von Bergen, M., Till, H., Seifert, J., (2012):
    Metaproteome analysis and molecular genetics of rat intestinal microbiota reveals section and localisation resolved species distribution and enzymatic functionalities
    J. Proteome Res. 11 (11), 5406 - 5417
    Volltext (URL)
  • Haas, S., Jahnke, H.-G., Moerbt, N., von Bergen, M., Aharinejad, S., Andrukhova, O., Robitzki, A.A., (2012):
    DIGE proteome analysis reveals suitability of ischemic cardiac in vitro model for studying cellular response to acute ischemia and regeneration
    PLoS One 7 (2), e31669
    Volltext (URL)
  • Hörnig, F., Weisse, K., Röder, S., Kohajda, T., von Bergen-Tomm, M., Borte, M., Diez, U., Simon, J., Denburg, J., Lehmann, I., (2012):
    Infantile eosinophil/basophil progenitors are more sensitive to indoor chemical exposures compared to their mothers
    Allergy 67 (Suppl. 96), 574 - 574
    Volltext (URL)
  • Jehmlich, N., Kopinke, F.-D., Lenhard, S., Vogt, C., Herbst, F.-A., Seifert, J., Lissner, U., Völker, U., Schmidt, F., von Bergen, M., (2012):
    Sulfur-36S stable isotope labeling of amino acids for quantification (SULAQ)
    Proteomics 12 (1), 37 - 42
    Volltext (URL)
  • Kermer, R., Hedrich, S., Taubert, M., Baumann, S., Schlömann, M., Johnson, D.B., Seifert, J., (2012):
    Elucidation of carbon transfer in a mixed culture of Acidiphilium cryptum and Acidithiobacillus ferrooxidans using protein-based stable isotope probing
    Journal of Integrated OMICS 2 (1), 37 - 45
    Volltext (URL)
  • Kespohl, S., Kotschy-Lang, N., Tomm, J.M., von Bergen, M., Maryska, S., Brüning, T., Raulf-Heimsoth, M., (2012):
    Occupational IgE-mediated softwood allergy: characterization of the causative allergen
    Int. Arch. Allergy Immunol. 157 (2), 202 - 208
    Volltext (URL)
  • Lipstein, N., Schaks, S., Dimova, K., Kalkhof, S., Ihling, C., Kolbel, K., Ashery, U., Rhee, J., Brose, N., Sinz, A., Jahn, O., (2012):
    Non-conserved Ca2+/calmodulin binding sites in Munc13s differentially control synaptic short-term plasticity
    Mol. Cell. Biol. 32 (22), 4628 - 4641
    Volltext (URL)
  • Marco-Urrea, E., Seifert, J., von Bergen, M., Adrian, L., (2012):
    Stable isotope peptide mass spectrometry to decipher amino acid metabolism in Dehalococcoides strain CBDB1
    J. Bacteriol. 194 (16), 4169 - 4177
    Volltext (URL)
  • Morris, B.E.L., Herbst, F.-A., Bastida, F., Seifert, J., von Bergen, M., Richnow, H.-H., Suflita, J.M., (2012):
    Microbial interactions during residual oil and n-fatty acid metabolism by a methanogenic consortium
    Environ. Microbiol. Rep. 4 (3), 297 - 306
    Volltext (URL)
  • Müller, A., (2012):
    Schimmelpilzexposition im Innenraum und deren gesundheitlichen Auswirkungen
    Dissertation, Universität Leipzig
    96 S.
  • Müller, S.A., van der Smissen, A., von Feilitzsch, M., Anderegg, U., Kalkhof, S., von Bergen, M., (2012):
    Quantitative proteomics reveals altered expression of extracellular matrix related proteins of human primary dermal fibroblasts in response to sulfated hyaluronan and collagen applied as artificial extracellular matrix
    J. Mater. Sci.-Mater. Med. 23 (12), 3053 - 3065
    Volltext (URL)
  • Oberbach, A., von Bergen, M., Blueher, S., Lehmann, S., Till, H., (2012):
    Combined serum proteomic and metabonomic profiling after laparoscopic sleeve gastrectomy in children and adolescents
    J. Laparoendosc. Adv. Surg. Tech. 22 (2), 184 - 188
    Volltext (URL)
  • Oberender, J., Kung, J.W., Seifert, J., von Bergen, M., Boll, M., (2012):
    Identification and characterization of a succinyl-coenzyme A (CoA):benzoate CoA transferase in Geobacter metallireducens
    J. Bacteriol. 194 (10), 2501 - 2508
    Volltext (URL)
  • Otto, C., Reiche, K., Hackermüller, J., (2012):
    Detection of differentially expressed segments in tiling array data
    Bioinformatics 28 (11), 1471 - 1479
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  • Pohler, P., Lehmann, J., Veneruso, V., Tomm, J., von Bergen, M., Lambrecht, B., Kohn, B., Weingart, C., Müller, T.H., Seltsam, A., (2012):
    Evaluation of the tolerability and immunogenicity of ultraviolet C-irradiated autologous platelets in a dog model
    Transfusion 52 (11), 2414 - 2426
    Volltext (URL)
  • Reinhold, A., Westermann, M., Seifert, J., von Bergen, M., Schubert, T., Diekert, G., (2012):
    Impact of vitamin B12 on the formation of the tetrachloroethene reductive dehalogenase in Desulfitobacterium hafniense strain Y51
    Appl. Environ. Microb. 78 (22), 8025 - 8032
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  • Salbach, J., Kliemt, S., Rauner, M., Rachner, T.D., Goettsch, C., Kalkhof, S., von Bergen, M., Möller, S., Schnabelrauch, M., Hintze, V., Scharnweber, D., Hofbauer, L.C., (2012):
    The effect of the degree of sulfation of glycosaminoglycans on osteoclast function and signaling pathways
    Biomaterials 33 (33), 8418 - 8429
    Volltext (URL)
  • Schmidt, A.-C., Lauckner, S., Lindner, K., (2012):
    CZE of sulfur-containing amino acids and peptides and its application to the quantitative study of heavy metal-caused thiol oxidations
    Chromatographia 75 (11-12), 661 - 670
    Volltext (URL)
  • Seifert, J., Taubert, M., Jehmlich, N., Schmidt, F., Völker, U., Vogt, C., Richnow, H.H., von Bergen, M., (2012):
    Protein-based stable isotope probing (protein-SIP) in functional metaproteomics
    Mass Spectrom. Rev. 31 (6), 683 - 697
    Volltext (URL)
  • Sultana, M., Vogler, S., Zargar, K., Schmidt, A.-C., Saltikov, C., Seifert, J., Schlömann, M., (2012):
    New clusters of arsenite oxidase and unusual bacterial groups in enrichments from arsenic-contaminated soil
    Arch. Microbiol. 194 (7), 623 - 635
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  • Taubert, M., Vogt, C., Wubet, T., Kleinsteuber, S., Tarkka, M.T., Harms, H., Buscot, F., Richnow, H.-H., von Bergen, M., Seifert, J., (2012):
    Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium
    ISME J. 6 (12), 2291 - 2301
    Volltext (URL)
  • von Bergen, M., Reiche, K., Hösler, N., Rockstroh, M., Horn, F., Hackermüller, J., Tomm, J., (2012):
    A time resolved analysis of nc/mRNA and protein expression throughout Th cell activation
    Immunology 137 (Suppl. S1), 364 - 364
    Volltext (URL)
  • Wagner, A., Cooper, M., Ferdi, S., Seifert, J., Adrian, L., (2012):
    Growth of Dehalococcoides mccartyi strain CBDB1 by reductive dehalogenation of brominated benzenes to benzene
    Environ. Sci. Technol. 46 (16), 8960 - 8968
    Volltext (URL)
  • Weisse, K., Lehmann, I., Heroux, D., Kohajda, T., Herberth, G., Röder, S., von Bergen, M., Borte, M., Denburg, J., (2012):
    The LINA cohort: indoor chemical exposure, circulating eosinophil/basophil (Eo/B) progenitors and early life skin manifestations
    Clin. Exp. Allergy 42 (9), 1337 - 1346
    Volltext (URL)
  • Weisse, K., Winkler, S., Stangl, G.I., Hirche, F., Herberth, G., Hinz, D., Bauer, M., Röder, S., Rolle-Kampczyk, U., von Bergen-Tomm, M., Olek, S., Sack, U., Borte, M., Richter, T., Lehmann, I., (2012):
    Maternal and newborn vitamin D status and its impact on fetal regulatory T cell development and children's atopy risk in the German LINA cohort study
    J. Reprod. Immunol. 94 (1), 53 - 54
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  • Wirth, H., von Bergen, M., Binder, H., (2012):
    Mining SOM expression portraits: feature selection and integrating concepts of molecular function
    BioData Mining 5 (October), art. 18
    Volltext (URL)
  • Wirth, H., von Bergen, M., Murugaiyan, J., Roesler, U., Stokowy, T., Binder, H., (2012):
    MALDI-typing of infectious algae of the genus Prototheca using SOM portraits
    J. Microbiol. Methods 88 (1), 83 - 89
    Volltext (URL)
  • Wuttig, D., Zastrow, S., Füssel, S., Toma, M.I., Meinhardt, M., Kalman, K., Junker, K., Sanjmyatav, J., Boll, K., Hackermüller, J., Rolle, A., Grimm, M.O., Wirth, M.P., (2012):
    CD31, EDNRB and TSPAN7 are promising prognostic markers in clear-cell renal cell carcinoma revealed by genome-wide expression analyses of primary tumors and metastases
    Int. J. Cancer 131 (5), E693 - E704
    Volltext (URL)
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2011 (34)

  • Bastida, F., Jechalke, S., Bombach, P., Franchini, A.G., Seifert, J., von Bergen, M., Vogt, C., Richnow, H.H., (2011):
    Assimilation of benzene carbon through multiple trophic levels traced by different stable isotope probing methodologies
    FEMS Microbiol. Ecol. 77 (2), 357 - 369
    Volltext (URL)
  • Dautel, F., Kalkhof, S., Trump, S., Lehmann, I., Beyer, A., von Bergen, M., (2011):
    Large-scale 2-D DIGE studies - guidelines to overcome pitfalls and challenges along the experimental procedure
    Journal of Integrated OMICS 1 (1), 170 - 179
    Volltext (URL)
  • Dautel, F., Kalkhof, S., Trump, S., Michaelson, J., Beyer, A., Lehmann, I., von Bergen, M., (2011):
    DIGE-based protein expression analysis of B[a]P-exposed hepatoma cells reveals a complex stress response including alterations in oxidative stress, cell cycle control, and cytoskeleton motility at toxic and subacute concentrations
    J. Proteome Res. 10 (2), 379 - 393
    Volltext (URL)
  • Dietrich, A., Blüher, M., Jonas, S., Shang, E., Till, H., von Bergen, M., Oberbach, A., (2011):
    Metabolic effects of sleeve gastrectomy on different serum proteins
    Obes. Surg. 21 (8), 1064 - 1064
    Volltext (URL)
  • Diez, U., Müller, A., (2011):
    Einfluss der Schimmelpilzbelastung in Wohnungen auf die Gesundheit
    Pädiatrische Allergologie in Klinik und Praxis 14 (2), 40 - 42
    Volltext (URL)
  • Georgieva, D., Seifert, J., Öhler, M., von Bergen, M., Spencer, P., Arni, R.K., Genov, N., Betzel, C., (2011):
    Pseudechis australis venomics: adaptation for a defense against microbial pathogens and recruitment of body transferrin
    J. Proteome Res. 10 (5), 2440 - 2464
    Volltext (URL)
  • Goodman, V., Müller, A., Gröger-Arndt, H., Schlosser, D., Jehmlich, N., Treudler, R., Lehmann, I., Simon, J.-C., von Bergen, M., (2011):
    Identification of spore specific allergen candidates from Penicillium chrysogenum
    Journal of Integrated OMICS 1 (2), 272 - 279
    Volltext (URL)
  • Hedrich, S., Lünsdorf, H., Kleeberg, G., Heide, G., Seifert, J., Schlömann, M., (2011):
    Schwertmannite formation adjacent to bacterial cells in a mine water treatment plant and in pure cultures of ‘Ferrovum myxofaciens’
    Environ. Sci. Technol. 45 (18), 7685 - 7692
    Volltext (URL)
  • Hempel, K., Herbst, F.-A., Moche, M., Hecker, M., Becher, D., (2011):
    Quantitative proteomic view on secreted, cell surface-associated, and cytoplasmic proteins of the methicillin-resistant human pathogen Staphylococcus aureus under iron-limited conditions
    J. Proteome Res. 10 (4), 1657 - 1666
    Volltext (URL)
  • Herbarth, O., Müller, A., (2011):
    Allergien durch Schimmelpilze: Ergebnisse aus epidemiologischen, umweltmedizinischen und interventionellen Studie. Allergic disorders caused by mould: results of epidemiological, environmental health and intervention studies
    Allergologie 34 (1), 3 - 9
  • Hösler, N., Hackermüller, J., Reiche, K., Horn, F., (2011):
    Identification of ncRNAs regulating differencoation and function of CD4+ T cells. PS2-061
    Cytokine 56 (1), 81 - 81
    Volltext (URL)
  • Jehmlich, N., Seifert, J., Taubert, M., Schmidt, F., Vogt, C., Richnow, H.H., von Bergen, M., (2011):
    Protein stable isotope probing
    In: Murrell, J.C., Whiteley, A.S., (eds.)
    Stable isotope probing and related technologies
    ASM Press, Washington, DC, p. 71 - 93
  • Kuntze, K., Kiefer, P., Baumann, S., Seifert, J., von Bergen, M., Vorholt, J.A., Boll, M., (2011):
    Enzymes involved in the anaerobic degradation of meta-substituted halobenzoates
    Mol. Microbiol. 82 (3), 758 - 769
    Volltext (URL)
  • Marco-Urrea, E., Paul, S., Khodaverdi, V., Seifert, J., von Bergen, M., Kretzschmar, U., Adrian, L., (2011):
    Identification and characterization of a Re-Citrate synthase in Dehalococcoides strain CBDB1
    J. Bacteriol. 193 (19), 5171 - 5178
    Volltext (URL)
  • Marino, D.J., Castro, E.A., Massolo, L., Mueller, A., Herbarth, O., Ronco, A.E., (2011):
    Characterization of polycyclic aromatic hydrocarbon profiles by multivariate statistical analysis
    International Journal of Chemoinformatics and Chemical Engineering 1 (2), 1 - 14
    Volltext (URL)
  • Michaelson, J., Trump, S., Rudzok, S., Gräbsch, C., Madureira, D.J., Dautel, F., Mai, J., Attinger, S., Schirmer, K., von Bergen, M., Lehmann, I., Beyer, A., (2011):
    Transcriptional signatures of regulatory and toxic responses to benzo-[a]-pyrene exposure
    BMC Genomics 12 , art. 502
    Volltext (URL)
  • Mögel, I., Baumann, S., Böhme, A., Kohajda, T., von Bergen, M., Simon, J.-C., Lehmann, I., (2011):
    The aromatic volatile organic compounds toluene, benzene and styrene induce COX-2 and prostaglandins in human lung epithelial cells via oxidative stress and p38 MAPK activation
    Toxicology 289 (1), 28 - 37
    Volltext (URL)
  • Mörbt, N., Feltens, R., Tomm, J., Kalkhof, S., Mögel, I., Vogt, C., Lehmann, I., von Bergen, M., (2011):
    Chlorinated benzenes cause concomitantly oxidative stress and induction of apoptotic markers in lung epithelial cells (A549) at non-acute toxic concentrations
    J. Proteome Res. 10 (2), 363 - 378
    Volltext (URL)
  • Oberbach, A., Blüher, M., Wirth, H., Till, H., Kovacs, P., Kullnick, Y., Schlichting, N., Tomm, J.M., Rolle-Kampczyk, U., Murugaiyan, J., Binder, H., Dietrich, A., von Bergen, M., (2011):
    Combined proteomic and metabolomic profiling of serum reveals association of the complement system with obesity and identifies novel markers of body fat mass changes
    J. Proteome Res. 10 (10), 4769 - 4788
    Volltext (URL)
  • Oberbach, A., Till, H., Dietrich, A., Shang, E., von Bergen, M., (2011):
    Integrated proteomic and lipidomic analysis of secretory phospholipase A2 and lysophosphatidylcholines metabolism following sleeve gastrectomy
    Obes. Surg. 21 (8), 1064 - 1065
    Volltext (URL)
  • Otto, W., Stadler, P.F., Prohaska, S.J., (2011):
    Phylogenetic footprinting and consistent sets of local aligments
    In: Giancarlo, R., Manzini, G., (eds.)
    Combinatorial Pattern Matching : 22nd Annual Symposium, CPM 2011, Palermo, Italy, June 27-29, 2011. Proceedings
    Lect. Notes Comput. Sci. 6661
    Springer, Berlin, Heidelberg, New York, p. 118 - 131
    Volltext (URL)
  • Reiche, K., Schutt, K., Boll, K., Horn, F., Hackermüller, J., (2011):
    Bioinformatics for RNomics
    In: Mayer, B., (ed.)
    Bioinformatics for Omics data
    Methods in Molecular Biology 719
    Humana Press, Totowa, NJ, p. 299 - 330
    Volltext (URL)
  • Rockstroh, M., Müller, S.A., Jende, C., Kerzhner, A., von Bergen, M., Tomm, J.M., (2011):
    Cell fractionation - an important tool for compartment proteomics
    Journal of Integrated OMICS 1 (1), 135 - 143
    Volltext (URL)
  • Rose, D., Hiller, M., Schutt, K., Hackermüller, J., Backofen, R., Stadler, P.F., (2011):
    Computational discovery of human coding and non-coding transcripts with conserved splice sites
    Bioinformatics 27 (14), 1894 - 1900
    Volltext (URL)
  • Rudzok, S., Krejči, S., Graebsch, C., Herbarth, O., Mueller, A., Bauer, M., (2011):
    Toxicity profiles of four metals and 17 xenobiotics in the human hepatoma cell line HepG2 and the protozoa Tetrahymena pyriformis - A comparison
    Environ.Toxicol. 26 (2), 171 - 186
    Volltext (URL)
  • Schramedei, K., Mörbt, N., Pfeifer, G., Läuter, J., Rosolowski, M., Tomm, J.M., von Bergen, M., Horn, F., Brocke-Heidrich, K., (2011):
    MicroRNA-21 targets tumor suppressor genes ANP32A and SMARCA4
    Oncogene 30 (6), 2975 - 2985
    Volltext (URL)
  • Schramm, F., Müller, A., Hammer, H., Paschke, A., Schüürmann, G., (2011):
    Epoxide and thiirane toxicity in vitro with the ciliates Tetrahymena pyriformis: structural allerts indicating excess toxicity
    Environ. Sci. Technol. 45 (13), 5812 - 5819
    Volltext (URL)
  • Sultana, M., Härtig, C., Planer-Friedrich, B., Seifert, J., Schlömann, M., (2011):
    Bacterial communities in Bangladesh aquifers differing in aqueous arsenic concentration
    Geomicrobiol. J. 28 (3), 198 - 211
    Volltext (URL)
  • Taubert, M., Baumann, S., von Bergen, M., Seifert, J., (2011):
    Exploring the limits of robust detection of incorporation of 13C by mass spectrometry in protein-based stable isotope probing (protein-SIP)
    Anal. Bioanal. Chem. 401 (6), 1975 - 1982
    Volltext (URL)
  • Taubert, M., Jehmlich, N., Vogt, C., Richnow, H.H., Schmidt, F., von Bergen, M., Seifert, J., (2011):
    Time resolved protein-based stable isotope probing (Protein-SIP) analysis allows quantification of induced proteins in substrate shift experiments
    Proteomics 11 (11), 2265 - 2274
    Volltext (URL)
  • Tischer, C.G., Hohmann, C., Thiering, E., Herbarth, O., Müller, A., Henderson, J., Granell, R., Fantini, M.P., Luciano, L., Bergström, A., Kull, I., Link, E., von Berg, A., Kuehni, C.E., Strippoli, M.P.F., Gehring, U., Wijga, A., Eller, E., Bindslev-Jensen, C., Keil, T., Heinrich, J., (2011):
    Meta-analysis of mould and dampness exposure on asthma and allergy in eight European birth cohorts: an ENRIECO initiative
    Allergy 66 (12), 1570 - 1579
    Volltext (URL)
  • Tramontano, A., Donath, A., Bernhart, S.H., Reiche, K., Böhmdorfer, C., Stadler, P.F., Bachmair, A., (2011):
    Deletion analysis of the 3' long terminal repeat sequence of plant retrotransposon Tto1 identifies 125 base pairs redundancy as sufficient for first strand transfer
    Virology 412 (1), 75 - 82
    Volltext (URL)
  • Washietl, S., Findeiss, S., Müller, S.A., Kalkhof, S., von Bergen, M., Hofacker, I.L., Stadler, P.F., Goldmann, N., (2011):
    RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data
    RNA 17 (4), 578 - 594
    Volltext (URL)
  • Wirth, H., Löffler, M., von Bergen, M., Binder, H., (2011):
    Expression cartography of human tissues using self organizing maps
    BMC Bioinformatics 12 , art. 306
    Volltext (URL)
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2010 (28)

  • Bastida, F., Rosell, M., Franchini, A.G., Seifert, J., Finsterbusch, S., Jehmlich, N., Jechalke, S., von Bergen, M., Richnow, H.H., (2010):
    Elucidating MTBE degradation in a mixed consortium using a multidisciplinary approach
    FEMS Microbiol. Ecol. 73 (2), 370 - 384
    Volltext (URL)
  • Binder, H., Wirth, H., Galle, J., (2010):
    Gene expression density profiles characterize modes of genomic regulation: theory and experiment
    J. Biotechnol. 149 (3), 98 - 114
    Volltext (URL)
  • Feltens, R., Görner, R., Kalkhof, S., Gröger-Arndt, H., von Bergen, M., (2010):
    Discrimination of different species from the genus Drosophila by intact protein profiling using matrix-assisted laser desorption ionization mass spectrometry
    BMC Evol. Biol. 10 , art. 95
    Volltext (URL)
  • Fetzer, I., Jehmlich, N., Vogt, C., Richnow, H.H., Seifert, J., Harms, H., von Bergen, M., Schmidt, F., (2010):
    Calculation of partial isotope incorporation into peptides measured by mass spectrometry
    BMC Research Notes 3 , art. 178
    Volltext (URL)
  • Georgieva, D., Öhler, M., Seifert, J., von Bergen, M., Arni, R.K., Genov, N., Betzel, C., (2010):
    Snake venomic of Crotalus durissus terrificus-correlation with pharmacological activities
    J. Proteome Res. 9 (5), 2302 - 2316
    Volltext (URL)
  • Georgieva, D., Redecke, L., von Bergen, M., Genov, N., Betzel, C., (2010):
    Interactions of ginkgolides A and B with a recombinant human prion protein
    Protein Pept. Lett. 17 (3), 399 - 404
    Volltext (URL)
  • Gündel, U., Kalkhof, S., von Bergen, M., Altenburger, R., Küster, E., (2010):
    Concentration-response concept in ecotoxicoproteomics: an optimised design for the detection of robust chemical stress associated protein markers: Effects of different concentrations of phenanthren to the proteome of Danio rerio embryos
    Comp. Biochem. Physiol. A-Mol. Integr. Physiol. 157 (Suppl. 1), S42 - S43
    Volltext (URL)
  • Heinrich, U.-R., Selivanova, O., Schmidtmann, I., Feltens, R., Brieger, J., Mann, W.J., (2010):
    Noise exposure alters cyclooxygenase 1 (COX-1) and 5-lipoxygenase (5-LO) expression in the guinea pig cochlea
    Acta Oto-Laryngol. 130 (3), 358 - 365
    Volltext (URL)
  • Jehmlich, N., Fetzer, I., Seifert, J., Mattow, J., Vogt, C., Harms, H., Thiede, B., Richnow, H.H., von Bergen, M., Schmidt, F., (2010):
    Decimal place slope: a fast and precise method for quantifying 13C incorporation levels for detecting the metabolic activity of microbial species
    Mol. Cell. Proteomics 9 (6), 1221 - 1227
    Volltext (URL)
  • Jehmlich, N., Hübschmann, T., Gesell Salazar, M., Völker, U., Benndorf, D., Müller, S., von Bergen, M., Schmidt, F., (2010):
    Advanced tool for characterization of microbial cultures by combining cytomics and proteomics
    Appl. Microbiol. Biotechnol. 88 (2), 575 - 584
    Volltext (URL)
  • Jehmlich, N., Kleinsteuber, S., Vogt, C., Benndorf, D., Harms, H., Schmidt, F., von Bergen, M., Seifert, J., (2010):
    Phylogenetic and proteomic analysis of an anaerobic toluene-degrading community
    J. Appl. Microbiol. 109 (6), 1937 - 1945
    Volltext (URL)
  • Jehmlich, N., Schmidt, F., Taubert, M., Seifert, J., Bastida, F., von Bergen, M., Richnow, H.-H., Vogt, C., (2010):
    Protein-based stable isotope probing
    Nat. Protoc. 5 (12), 1957 - 1966
    Volltext (URL)
  • Kalkhof, S., Haehn, S., Paulsson, M., Smyth, N., Meiler, J., Sinz, A., (2010):
    Computational modeling of laminin N-terminal domains using sparse distance constraints from disulfide bonds and chemical cross-linking
    Proteins 78 (16), 3409 - 3427
    Volltext (URL)
  • Kalkhof, S., Witte, K., Ihling, C.H., Müller, M.Q., Keller, M.V., Haehn, S., Smyth, N., Paulsson, M., Sinz, A., (2010):
    A novel disulfide pattern in laminin-type epidermal growth factor-like (LE) modules of laminin β1 and γ1 chains
    Biochemistry 49 (38), 8359 - 8366
    Volltext (URL)
  • Kung, J.W., Baumann, S., von Bergen, M., Müller, M., Hagedoorn, P.-L., Hagen, W.R., Boll, M., (2010):
    Reversible biological Birch reduction at an extremely low redox potential
    J. Am. Chem. Soc. 132 (28), 9850 - 9856
    Volltext (URL)
  • Leibeling, S., Schmidt, F., Jehmlich, N., von Bergen, M., Müller, R.H., Harms, H., (2010):
    Declining capacity of starving Delftia acidovorans MC1 to degrade phenoxypropionate herbicides correlates with oxidative modification of the initial enzyme
    Environ. Sci. Technol. 44 (10), 3793 - 3799
    Volltext (URL)
  • Leibeling, S., Taubert, M., Seifert, J., von Bergen, M., Harms, H., Müller, R.H., (2010):
    Adaptation of the herbicide-degrading strain Delftia acidovorans MC1 through carbonylation of RdpA as key enzyme
    J. Biotechnol. 150 (Suppl. 1), S262 - S263
    Volltext (URL)
  • Massolo, L., Rehwagen, M., Porta, A., Ronco, A., Herbarth, O., Mueller, A., (2010):
    Indoor-outdoor distribution and risk assessment of volatile organic compounds in the atmosphere of industrial and urban areas
    Environ.Toxicol. 25 (4), 339 - 349
    Volltext (URL)
  • Müller, S.A., Kohajda, T., Findeiß, S., Stadler, P.F., Washietl, S., Kellis, M., von Bergen, M., Kalkhof, S., (2010):
    Optimization of parameters for coverage of low molecular weight proteins
    Anal. Bioanal. Chem. 398 (7-8), 2867 - 2881
    Volltext (URL)
  • Öhler, M., Georgieva, D., Seifert, J., von Bergen, M., Arni, R.K., Genov, N., Betzel, C., (2010):
    The Venomics of Bothrops alternatus is a Pool of Acidic Proteins with Predominant Hemorrhagic and Coagulopathic Activities
    J. Proteome Res. 9 (5), 2422 - 2437
    Volltext (URL)
  • Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., Becher, D., (2010):
    Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis
    Nat. Commun. 1 , art. 137
    Volltext (URL)
  • Picotti, P., Rinner, O., Stallmach, R., Dautel, F., Farrah, T., Domon, B., Wenschuh, H., Aebersold, R., (2010):
    High-throughput generation of selected reaction-monitoring assays for proteins and proteomes
    Nat. Methods 7 , 43 - 46
    Volltext (URL)
  • Saalbach, A., Klein, C., Schirmer, C., Briest, W., Anderegg, U., Simon, J.-C., (2010):
    Dermal fibroblasts promote the migration of dendritic cells
    J. Invest. Dermatol. 130 (2), 444 - 454
    Volltext (URL)
  • Schirmer, C., Klein, C., von Bergen, M., Simon, J.-C., Saalbach, A., (2010):
    Human fibroblasts support the expansion of IL-17-producing T cells via up-regulation of IL-23 production by dendritic cells
    Blood 116 (10), 1715 - 1725
    Volltext (URL)
  • Schirmer, C., Klein, C., von Bergen, M., Simon, J.C., Saalbach, A., (2010):
    Differentiation of IL-17 secreting T cells is supported by human dermal fibroblasts via up-regulation of IL-23 production by dendritic cells
    Exp. Dermatol. 19 (2), 181 - 181
    Volltext (URL)
  • Selesi, D., Jehmlich, N., von Bergen, M., Schmidt, F., Rattei, T., Tischler, P., Lueders, T., Meckenstock, R.U., (2010):
    Combined genomic and proteomic approaches identify gene clusters involved in anaerobic 2-methylnaphthalene degradation in the dulfate-reducing enrichment culture N47
    J. Bacteriol. 192 (1), 295 - 306
    Volltext (URL)
  • Sträuber, H., Hübschmann, T., Jehmlich, N., Schmidt, F., von Bergen, M., Harms, H., Müller, S., (2010):
    NBDT (3-(N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino)-3-toluene) - A novel fluorescent dye for studying mechanisms of toluene uptake into vital bacteria
    Cytom. Part A 77A (2), 113 - 120
    Volltext (URL)
  • Tischler, D., Kermer, R., Gröning, J.A., Kaschabek, S.R., van Berkel, W.J.H., Schlömann, M., (2010):
    StyA1 and StyA2B from Rhodococcus opacus 1CP: a multifunctional styrene monooxygenase system
    J. Bacteriol. 192 (19), 5220 - 5227
    Volltext (URL)
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2009 (25)

  • Benndorf, D., Vogt, C., Jehmlich, N., Schmidt, Y., Thomas, H., Woffendin, G., Shevchenko, A., Richnow, H.-H., von Bergen, M., (2009):
    Improving protein extraction and separation methods for investigating the metaproteome of anaerobic benzene communities within sediments
    Biodegradation 20 (6), 737 - 750
    Volltext (URL)
  • Bruegel, M., Planert, M., Baumann, S., Focke, A., Bergh, F.T., Leichtle, A., Ceglarek, U., Thiery, J., Fiedler, G.M., (2009):
    Standardized peptidome profiling of human cerebrospinal fluid by magnetic bead separation and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
    J. Proteomics 72 (4), 608 - 615
    Volltext (URL)
  • Cianni, N., Müller, A., Lespade, P., Aguilar, M., Matamoros, N., Colman, E., Martin, M., Chiapperini, V., Bussi, L., Massolo, L., Wichmann, F., Porta, A., (2009):
    Calidad del aire y salud infantil en áreas urbanas e industriales de La Plata y Ensenada, Argentina
    In: Puliafito, S.E., Quaranta, N., (eds.)
    Contaminación atmosférica en Argentina: contribuciones de la II Reunión Anual PROIMCA
    Universidad Tecnológica Nacional, Mendoza, p. 37 - 44
  • Dimova, K., Kalkhof, S., Pottratz, I., Ihling, C., Rodriguez-Castaneda, F., Liepold, T., Griesinger, C., Brose, N., Sinz, A., Jahn, O., (2009):
    Structural insights into the calmodulin-Munc13 interaction obtained by cross-linking and mass spectrometry
    Biochemistry 48 (2), 5908 - 5921
    Volltext (URL)
  • Ehinger, S., Seifert, J., Kassahun, A., Schmalz, L., Hoth, N., Schlömann, M., (2009):
    Predominance of Methanolobus spp. and Methanoculleus spp. in the archaeal communities of saline gas field formation fluids
    Geomicrobiol. J. 26 (5), 326 - 338
    Volltext (URL)
  • Fiedler, G.M., Leichtle, A.B., Kase, J., Baumann, S., Ceglarek, U., Felix, K., Conrad, T., Witzigmann, H., Weimann, A., Schütte, C., Hauss, J., Büchler, M., Thiery, J., (2009):
    Serum peptidome profiling revealed platelet factor 4 as a potential discriminating peptide associated with pancreatic cancer
    Clin. Cancer Res. 15 (11), 3812 - 3819
    Volltext (URL)
  • Gniese, C., Kruger, M., Frerichs, J., Kassahun, A., Hoth, N., Seifert, J., (2009):
    Determination of active microorganisms in the gas reservoir Altmark and their role in CO2 turnover
    Geochim. Cosmochim. Acta 73 (13 Suppl.), A442
    Volltext (URL)
  • Heine, F., Stahl, F., Sträuber, H., Wiacek, C., Benndorf, D., Repenning, C., Schmidt, F., Scheper, T., von Bergen, M., Harms, H., Müller, S., (2009):
    Prediction of flocculation ability of brewing yeast inoculates by flow cytometry, proteome analysis, and mRNA profiling
    Cytom. Part A 75A (2), 140 - 147
    Volltext (URL)
  • Heinzel, E., Hedrich, S., Janneck, E., Glombitza, F., Seifert, J., Schlömann, M., (2009):
    Bacterial diversity in a mine water treatment plant
    Appl. Environ. Microb. 75 (3), 858 - 861
    Volltext (URL)
  • Heinzel, E., Janneck, E., Glombitza, F., Schlömann, M., Seifert, J., (2009):
    Population dynamics of iron-oxidizing communities in pilot plants for the treatment of acid mine waters
    Environ. Sci. Technol. 43 (16), 6138 - 6144
    Volltext (URL)
  • Jehmlich, N., Schmidt, F., Taubert, M., Seifert, J., von Bergen, M., Richnow, H.-H., Vogt, C., (2009):
    Comparison of methods for simultaneous identification of bacterial species and determination of metabolic activity by protein-based stable isotope probing (Protein-SIP) experiments
    Rapid Commun. Mass Spectrom. 23 (12), 1871 - 1878
    Volltext (URL)
  • Junghanns, C., Pecyna, M.J., Böhm, D., Jehmlich, N., Martin, C., von Bergen, M., Schauer, F., Hofrichter, M., Schlosser, D., (2009):
    Biochemical and molecular genetic characterisation of a novel laccase produced by the aquatic ascomycete Phoma sp. UHH 5-1-03
    Appl. Microbiol. Biotechnol. 84 (6), 1095 - 1105
    Volltext (URL)
  • Manolaridis, I., Mumtsidu, E., Konarev, P., Makhov, A.M., Fullerton, S.W., Sinz, A., Kalkhof, S., McGeehan, J.E., Cary, P.D., Griffith, J.D., Svergun, D., Kneale, G.G., Tucker, P.A., (2009):
    Structural and biophysical characterization of the proteins interacting with the herpes simplex virus 1 origin of replication
    J. Biol. Chem. 284 (24), 16343 - 16353
    Volltext (URL)
  • Massolo, L., Müller, A., Rehwagen, M., Porta, A., Herbarth, O., Ronco, A., (2009):
    Estimación del riesgo asociado a PAHs en ambientes urbanos e industriales
    In: Puliafito, S.E., Quaranta, N., (eds.)
    Contaminación atmosférica en Argentina: contribuciones de la II Reunión Anual PROIMCA
    Universidad Tecnológica Nacional, Mendoza, p. 45 - 53
  • Matysik, S., Herbarth, O., Mueller, A., (2009):
    Determination of microbial volatile organic compounds (MVOCs) by passive sampling onto charcoal sorbents
    Chemosphere 76 (1), 114 - 119
    Volltext (URL)
  • Mörbt, N., Mögel, I., Kalkhof, S., Feltens, R., Röder-Stolinski, C., Zheng, J., Vogt, C., Lehmann, I., von Bergen, M., (2009):
    Proteome changes in human bronchoalveolar cells following styrene exposure indicate involvement of oxidative stress in the molecular-response mechanism
    Proteomics 9 (21), 4909 - 4933
    Volltext (URL)
  • Rehders, D., Classen, B., Redecke, L., Buschke, A., Reibe, C., Jehmlich, N., von Bergen, M., Betzel, A., Meyer, B., (2009):
    Peptide NMHRYPNQ of the Cellular Prion Protein (PrPC) Inhibits Aggregation and Is a Potential Key for Understanding Prion-Prion Interactions
    J. Mol. Biol. 392 (1), 198 - 207
    Volltext (URL)
  • Risch, M., Georgieva, D., von Bergen, M., Jehmlich, N., Genov, N., Arni, R.K., Betzel, C., (2009):
    Snake venomics of the Siamese Russell's viper (Daboia russelli siamensis) - Relation to pharmacological activities
    J. Proteomics 72 (2), 256 - 269
    Volltext (URL)
  • Saalbach, A., Klein, C., Schirmer, C., Anderegg, U., Simon, J.C., (2009):
    Role of dermal fibroblasts in the regulation of dendritic cellmigration
    Exp. Dermatol. 18 (3), 291 - 291
    Volltext (URL)
  • Schleinitz, K.M., Schmeling, S., Jehmlich, N., von Bergen, M., Harms, H., Kleinsteuber, S., Vogt, C., Fuchs, G., (2009):
    Phenol degradation in the strictly anaerobic iron-reducing bacterium Geobacter metallireducens GS-15
    Appl. Environ. Microb. 75 (12), 3912 - 3919
    Volltext (URL)
  • Seifert, J., Jehmlich, N., Schmidt, F., Taubert, M., von Bergen, M., Richnow, H.-H., Vogt, C., (2009):
    Protein-stable isotope probing (Protein-SIP) for simultaneous identification of bacterial species and determination of metabolic activity
    Geochim. Cosmochim. Acta 73 (13 Suppl.), A1191
    Volltext (URL)
  • von Bergen, M., Eidner, A., Schmidt, F., Murugaiyan, J., Wirth, H., Binder, H., Maier, T., Roesler, U., (2009):
    Identification of harmless and pathogenic algae of the genus Prototheca by MALDI-MS
    Proteom. Clin. Appl. 3 (7), 774 - 787
    Volltext (URL)
  • Wichmann, F.A., Müller, A., Busi, L.E., Cianni, N., Massolo, L., Schlink, U., Porta, A., Sly, P.D., (2009):
    Increased asthma and respiratory symptoms in children exposed to petrochemical pollution
    J. Allergy Clin. Immunol. 123 (3), 632 - 638
    Volltext (URL)
  • Wichmann, G., Franck, U., Herbarth, O., Rehwagen, M., Dietz, A., Massolo, L., Ronco, A., Müller, A., (2009):
    Different immunomodulatory effects associated with sub-micrometer particles in ambient air from rural, urban and industrial areas
    Toxicology 257 (3), 127 - 136
    Volltext (URL)
  • Wischgoll, S., Taubert, M., Peters, F., Jehmlich, N., von Bergen, M., Boll, M., (2009):
    Decarboxylating and nondecarboxylating glutaryl-coenzyme A dehydrogenases in the aromatic metabolism of obligately anaerobic bacteria
    J. Bacteriol. 191 (13), 4401 - 4409
    Volltext (URL)
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2008 (19)

  • Andronesi, O.C., von Bergen, M., Biernat, J., Seidel, K., Griesinger, C., Mandelkow, E., Baldus, M., (2008):
    Characterization of Alzheimer's-like paired helical filaments from the core domain of tau protein using solid-state NMR spectroscopy
    J. Am. Chem. Soc. 130 (18), 5922 - 5928
    Volltext (URL)
  • Balcke, G.U., Wegener, S., Kiesel, B., Benndorf, D., Schlömann, M., Vogt, C., (2008):
    Kinetics of chlorobenzene biodegradation under reduced oxygen levels
    Biodegradation 19 (4), 507 - 518
    Volltext (URL)
  • Benndorf, D., Müller, A., Bock, K., Manuwald, O., Herbarth, O., von Bergen, M., (2008):
    Identification of spore allergens from the indoor mould Aspergillus versicolor
    Allergy 63 (4), 454 - 460
    Volltext (URL)
  • Bock, K., Benndorf, D., Müller, A., Bauer, M., von Bergen, M., (2008):
    Identification of allergens from the indoor mold Aspergillus versicolor
    Allergy 63 (Suppl. 88), 530 - 531
    Volltext (URL)
  • Georgieva, D., Risch, M., Kardas, A., Buck, F., von Bergen, M., Betzel, C., (2008):
    Comparative Analysis of the Venom Proteomes of Vipera ammodytes ammodytes and Vipera ammodytes meridionalis
    J. Proteome Res. 7 (3), 866 - 886
    Volltext (URL)
  • Hehemann, J.H., Redecke, L., Murugaiyan, J., von Bergen, M., Betzel, C., Saborowski, R., (2008):
    Autoproteolytic stability of a trypsin from the marine crab Cancer pagurus
    Biochem. Biophys. Res. Commun. 370 (4), 566 - 571
    Volltext (URL)
  • Jeganathan, S., von Bergen, M., Mandelkow, E., (2008):
    In search for the pathological conformation of tau protein
    Eur. J. Cell Biol. 87 (Suppl. 1), 49
    Volltext (URL)
  • Jeganathan, S., von Bergen, M., Mandelkow, E.-M., Mandelkow, E., (2008):
    The natively unfolded character of tau and its aggregation to Alzheimer-like paired helical filaments
    Biochemistry 47 (40), 10526 - 10539
    Volltext (URL)
  • Jehmlich, N., Schmidt, F., Hartwich, M., von Bergen, M., Richnow, H.H., Vogt, C., (2008):
    Incorporation of carbon and nitrogen atoms into proteins measured by protein-based stable isotope probing (Protein-SIP)
    Rapid Commun. Mass Spectrom. 22 (18), 2889 - 2897
    Volltext (URL)
  • Jehmlich, N., Schmidt, F., von Bergen, M., Richnow, H.H., Vogt, C., (2008):
    Protein-based stable isotope probing (Protein-SIP) reveals active species within anoxic mixed cultures
    ISME J. 2 (11), 1122 - 1133
    Volltext (URL)
  • Johannes, J., Bluschke, A., Jehmlich, N., von Bergen, M., Boll, M., (2008):
    Purification and characterization of active-site components of the putative p-cresol methylhydroxylase membrane complex from Geobacter metallireducens
    J. Bacteriol. 190 (19), 6493 - 6500
    Volltext (URL)
  • Kalkhof, S., Haehn, S., Ihling, C., Paulsson, M., Smyth, N., Sinz, A., (2008):
    Determination of disulfide bond patterns in laminin β1 chain N-terminal domains by nano-high-performance liquid chromatography/matrix-assisted laser desorption/ionization time-of-flight/time-of-flight mass spectrometry
    Rapid Commun. Mass Spectrom. 22 (12), 1933 - 1940
    Volltext (URL)
  • Kalkhof, S., Sinz, A., (2008):
    Chances and pitfalls of chemical cross-linking with amine-reactive N-hydroxysuccinimide esters
    Anal. Bioanal. Chem. 392 (1-2), 305 - 312
    Volltext (URL)
  • Massolo, L., Müller, A., Herbarth, O., Ronco, A.E., Porta, A., (2008):
    Contaminación atmosférica y salud infantil en áreas urbanas e industriales de La Plata, Argentina. Air pollution and children's health in urban and industrial areas of La Plata, Argentina
    Acta Bioquim. Clin. Latinoam. 42 (4), 567 - 574
    Volltext (URL)
  • Matysik, S., Herbarth, O., Müller, A., (2008):
    Determination of volatile metabolites originating from mould growth on wall paper and synthetic media
    J. Microbiol. Methods 75 (2), 182 - 187
    Volltext (URL)
  • Rehders, D., Claasen, B., Redecke, L., Reibe, C., Buschke, A., Jehmlich, N., von Bergen, M., Betzel, C., Meyer, B., (2008):
    Aggregation of the human cellular prion protein (PrPC) is quantitatively inhibited by the octapeptide NMHRVPNQ
    J. Pept. Sci. 14 (S1), 125 - 126
    Volltext (URL)
  • Röder-Stolinski, C., Fischäder, G., Oostingh, G.J., Feltens, R., Kohse, F., von Bergen, M., Mörbt, N., Eder, K., Duschl, A., Lehmann, I., (2008):
    Styrene induces an inflammatory response in human lung epithelial cells via oxidative stress and NF-κB activation
    Toxicol. Appl. Pharmacol. 231 (2), 241 - 247
    Volltext (URL)
  • Thiele, B., Rieder, O., Jehmlich, N., von Bergen, M., Müller, M., Boll, M., (2008):
    Aromatizing cyclohexa-1,5-diene-1-carbonyl-coenzyme A oxidase. Characterization and its role in anaerobic aromatic metabolism
    J. Biol. Chem. 283 (30), 20713 - 20721
    Volltext (URL)
  • Veeranagouda, Y., Benndorf, D., Heipieper, H.J., Karegoudar, T.B., (2008):
    Purification and characterization of NAD dependent n-butanol dehydrogenase from solvent tolerant n-butanol degrading Enterobacter sp VKGH12
    J. Microbiol. Biotechnol. 18 (4), 663 - 669
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2007 (25)

  • Anh, D.H., Ullrich, R., Benndorf, D., Svatos, A., Muck, A., Hofrichter, M., (2007):
    The coprophilous mushroom Coprinus radians secretes a haloperoxidase that catalyzes aromatic peroxygenation
    Appl. Environ. Microb. 73 (17), 5477 - 5485
    Volltext (URL)
  • Benndorf, D., Balcke, G.U., Harms, H., von Bergen, M., (2007):
    Functional metaproteome analysis of protein extracts from contaminated soil and groundwater
    ISME J. 1 (3), 224 - 234
    Volltext (URL)
  • Fischer, D., Mukrasch, M.D., von Bergen, M., Klos-Witkowska, A., Biernat, J., Griesinger, C., Mandelkow, E., Zweckstetter, M., (2007):
    Structural and microtubule binding properties of tau mutants of frontotemporal dementias
    Biochemistry 46 (10), 2574 - 2582
    Volltext (URL)
  • Fischer, W., Zadori, Z., Kullnick, Y., Gröger-Arndt, H., Franke, H., Wirkner, K., Illes, P., Mager, P.P., (2007):
    Conserved lysin and arginin residues in the extracellular loop of P2X(3) receptors are involved in agonist binding
    Eur. J. Pharmacol. 576 (1-3), 7 - 17
    Volltext (URL)
  • Fitzpatrick, P.F., Bozinovski, D.M., Heroux, A., Shaw, P.G., Valley, M.P., Orville, A.M., (2007):
    Mechanistic and structural analyses of the roles of Arg409 and Asp402 in the reaction of the flavoprotein nitroalkane oxidase
    Biochemistry 46 (48), 13800 - 13808
    Volltext (URL)
  • Gündel, U., Benndorf, D., von Bergen, M., Altenburger, R., Küster, E., (2007):
    Vitellogenin cleavage products as indicators for toxic stress in zebra fish embryos: a proteomic approach
    Proteomics 7 (24), 4541 - 4554
    Volltext (URL)
  • Heine, F., Wiacek, C., Benndorf, D., Sträuber, H., Stahl, F., von Bergen, M., Harms, H., Müller, S., (2007):
    Evidence of flocculation in brewing yeast strains by flow cytometry, proteome and mRNA profiling
    Cytom. Part A 71A (7), 513
    Volltext (URL)
  • Heine, F., Wiacek, C., Benndorf, D., Sträuber, H., Stahl, F., von Bergen, M., Harms, H., Müller, S., (2007):
    Evidence of flocculation in brewing yeast strains by flow cytometry, proteome and mRNA profiling
    Cytom. Part A 71A (9), 761
    Volltext (URL)
  • Kellner, H., Jehmlich, N., Benndorf, D., Hoffmann, R., Rühl, M., Hoegger, P.J., Majcherczyk, A., Kües, U., von Bergen, M., Buscot, F., (2007):
    Detection, quantification and identification of fungal extracellular laccases using polyclonal antibody and mass spectrometry
    Enzyme Microb. Technol. 41 (6-7), 694 - 701
    Volltext (URL)
  • Krejči, S., Herbarth, O., Rudzok, S., Schmücking, E., Müller, A., (2007):
    Chronic effects of metals, organophosphates and polycyclic aromatic hydrocarbons (PAH) on tetrahymena pyriformis
    Toxicol. Lett. 172 (Suppl. 1), S84 - S85
    Volltext (URL)
  • Mandelkow, E., von Bergen, M., Biernat, J., Mandelkow, E.-M., (2007):
    Structural principles of tau and the paired helical filaments of Alzheimer's disease
    Brain Pathol. 17 (1), 83 - 90
    Volltext (URL)
  • Martin, C., Pecyna, M., Kellner, H., Jehmlich, N., Junghanns, C., Benndorf, D., von Bergen, M., Schlosser, D., (2007):
    Purification and biochemical characterization of a laccase from the aquatic fungus Myrioconium sp. UHH 1-13-18-4 and molecular analysis of the laccase-encoding gene
    Appl. Microbiol. Biotechnol. 77 (3), 613 - 624
    Volltext (URL)
  • Mattow, J., Siejak, F., Hagens, K., Schmidt, F., Koehler, C., Treumann, A., Schaible, U.E., Kaufmann, S.H.E., (2007):
    An improved strategy for selective and efficient enrichment of integral plasma membrane proteins of mycobacteria
    Proteomics 7 (10), 1687 - 1701
    Volltext (URL)
  • Milius, D., Gröger-Arndt, H., Stanchev, D., Lange-Dohna, C., Rossner, S., Sperlágh, B., Wirkner, K., Illes, P., (2007):
    Oxygen/glucose deprivation increases the integration of recombinant P2X(7) receptors into the plasma membrane of HEK293 cells
    Toxicology 238 (1), 60 - 69
    Volltext (URL)
  • Mukrasch, M.D., Markwick, P., von Bergen, M., Bernado, P., Griesinger, C., Mandelkow, E., Zweckstetter, M., Blackledge, M., (2007):
    Highly populated turn conformations in natively unfolded tau protein identified from residual dipolar couplings and molecular simulation
    J. Am. Chem. Soc. 129 (16), 5235 - 5243
    Volltext (URL)
  • Mukrasch, M.D., von Bergen, M., Biernat, J., Fischer, D., Griesinger, C., Mandelkow, E., Zweckstetter, M., (2007):
    The "jaws" of the tau-microtubule interaction
    J. Biol. Chem. 282 (16), 12230 - 12239
    Volltext (URL)
  • Redecke, L., von Bergen, M., Clos, J., Konarev, P.V., Svergun, D.I., Fittschen, U.E., Broekaert, J.A., Bruns, O., Georgieva, D., Mandelkow, E., Genov, N., Betzel, C., (2007):
    Structural characterization of β-sheeted oligomers formed on the pathway of oxidative prion protein aggregation in vitro
    J. Struct. Biol. 157 (2), 308 - 320
    Volltext (URL)
  • Rohwerder, T., Breuer, U., Benndorf, D., Lechner, U., Müller, R.H., (2007):
    The MTBE and ETBE intermediate 2-HIBA is degraded via a cobalamin-dependent mutase pathway
    In: Bastiaens, L., (ed.)
    MTBE & other fuel oxygenates : proceedings of the 3rd European Conference, Antwerp, June 7-8, 2007
    Vito, Mol, p. 11 - 14
  • Santos, P.M., Roma, V., Benndorf, D., von Bergen, M., Harms, H., Sá-Correia, I., (2007):
    Mechanistic insights into the global response to phenol in the phenol-biodegrading strain Pseudomonas sp. M1 revealed by quantitative proteomics
    OMICS 11 (3), 233 - 251
    Volltext (URL)
  • Schäfer, F., Breuer, U., Benndorf, D., von Bergen, M., Harms, H., Müller, R.H., (2007):
    Growth of Aquincola tertiaricarbonis L108 on tert-butyl alcohol leads to the induction of a phthalate dioxygenase-related protein and its associated oxidoreductase subunit
    Eng. Life Sci. 7 (5), 512 - 519
    Volltext (URL)
  • Schmidt, F., Hustoft, H.K., Strozynski, M., Dimmler, C., Rudel, T., Thiede, B., (2007):
    Quantitative proteome analysis of cisplatin-induced apoptotic Jurkat T cells by stable isotope labeling with amino acids in cell culture, SDS-PAGE, and LC-MALDI-TOF/TOF MS
    Electrophoresis 28 (23), 4359 - 4368
    Volltext (URL)
  • Schmidt, F., Strozynski, M., Salus, S.S., Nilsen, H., Thiede, B., (2007):
    Rapid determination of amino acid incorporation by stable isotope labeling with amino acids in cell culture (SILAC)
    Rapid Commun. Mass Spectrom. 21 (23), 3919 - 3926
    Volltext (URL)
  • Schubert, T., Maskow, T., Benndorf, D., Harms, H., Breuer, U., (2007):
    Continuous synthesis and excretion of the compatible solute ectoine by a transgenic, nonhalophilic bacterium
    Appl. Environ. Microb. 73 (10), 3343 - 3347
    Volltext (URL)
  • Schulz, D.M., Kalkhof, S., Schmidt, A., Ihling, C., Stingl, C., Mechtler, K., Zschoernig, O., Sinz, A., (2007):
    Annexin A2/P11 interaction: New insights into annexin A2 tetramer structure by chemical crosslinking, high-resolution mass spectrometry, and computational modeling
    Proteins 69 (2), 254 - 269
    Volltext (URL)
  • Tomm, J.M., Filippowa, K., Vestweber, D., (2007):
    Multiple domain interactions between VE-cadherin and VE-PTP
    Eur. J. Cell Biol. 86 , 49
    Volltext (URL)
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2006 (14)

  • Benndorf, D., Thiersch, M., Loffhagen, N., Kunath, C., Harms, H., (2006):
    Pseudomonas putida KT2440 responds specifically to chlorophenoxy herbicides and their initial metabolites
    Proteomics 6 (11), 3319 - 3329
    Volltext (URL)
  • Georgieva, D., Schwark, D., von Bergen, M., Redecke, L., Genov, N., Betzel, C., (2006):
    Interactions of recombinant prions with compounds of therapeutical significance
    Biochem. Biophys. Res. Commun. 344 (2), 463 - 470
    Volltext (URL)
  • Ihling, C., Schmidt, A., Kalkhof, S., Schulz, D.M., Stingl, C., Mechtler, K., Haack, M., Beck-Sickinger, A.G., Cooper, D.M.F., Sinz, A., (2006):
    Isotope-labeled cross-linkers and Fourier transform ion cyclotron resonance mass spectrometry for structural analysis of a protein/peptide complex
    J. Am. Soc. Mass Spectrom. 17 (8), 1100 - 1113
    Volltext (URL)
  • Jeganathan, S., von Bergen, M., Brutlach, H., Steinhoff, H.J., Mandelkow, E., (2006):
    Global hairpin folding of tau in solution
    Biochemistry 45 (7), 2283 - 2293
    Volltext (URL)
  • Khlistunova, I., Biernat, J., Wang, Y.P., Pickhardt, M., von Bergen, M., Gazova, Z., Mandelkow, E., Mandelkow, E.-M., (2006):
    Inducible expression of tau repeat domain in cell models of tauopathy - Aggregation is toxic to cells but can be reversed by inhibitor drugs
    J. Biol. Chem. 281 (2), 1205 - 1214
    Volltext (URL)
  • Mandelkow, E., Pickhardt, M., Gazova, Z., von Bergen, M., Biernat, J., Khlistunova, I., Wang, Y.P., Hascher, A., Mandelkow, E.-M., (2006):
    Inhibition of tau aggregation and disaggregation of PHFs by low MW compounds in vitro and in cells
    Neurobiol. Aging 27 (Suppl. 1), S13
    Volltext (URL)
  • Mattow, J., Siejak, F., Hagens, K., Becher, D., Albrecht, D., Krah, A., Schmidt, F., Jungblut, P.R., Kaufmann, S.H.E., Schaible, U.E., (2006):
    Proteins unique to intraphagosomally grown Mycobacterium tuberculosis
    Proteomics 6 (8), 2485 - 2494
    Volltext (URL)
  • Rohwerder, T., Breuer, U., Benndorf, D., Lechner, U., Müller, R.H., (2006):
    The alkyl tert-butyl ether intermediate 2-hydroxyisobutyrate is degraded via a novel cobalamin-dependent mutase pathway
    Appl. Environ. Microb. 72 (6), 4128 - 4135
    Volltext (URL)
  • Schmidt, F., Dahlmann, B., Janek, K., Kloss, A., Wacker, M., Ackermann, R., Thiede, B., Jungblut, P.R., (2006):
    Comprehensive quantitative proteome analysis of 20S proteasome subtypes from rat liver by isotope coded affinity tag and 2-D gel-based approaches
    Proteomics 6 (16), 4622 - 4632
    Volltext (URL)
  • Schmidt, F., Krah, A., Schmid, M., Jungblut, P.R., Thiede, B., (2006):
    Distinctive mass losses of tryptic peptides generated by matrix-assisted laser desorption/ionization time-of-flight/time-of-flight
    Rapid Commun. Mass Spectrom. 20 (5), 933 - 936
    Volltext (URL)
  • von Bergen, M., Barghorn, S., Jeganathan, S., Mandelkow, E.-M., Mandelkow, E., (2006):
    Spectroscopic approaches to the conformation of tau protein in solution and in paired helical filaments
    Neurodegener. Dis. 3 (4-5), 197 - 206
    Volltext (URL)
  • von Bergen, M., Barghorn, S., Müller, S.A., Pickhardt, M., Biernat, J., Mandelkow, E.-M., Davies, P., Aebi, U., Mandelkow, E., (2006):
    The core of tau-paired helical filaments studied by scanning transmission electron microscopy and limited proteolysis
    Biochemistry 45 (20), 6446 - 6457
    Volltext (URL)
  • Westendorf, A., Benndorf, D., Pribyl, T., Harms, H., Müller, R.H., (2006):
    Kinetic traits and enzyme form patterns of (R)-2-(2,4-Dichlorophenoxy)propionate/a-ketoglutarate dioxygenase (RdpA) after expression in different bacterial strains
    Eng. Life Sci. 6 (6), 552 - 559
    Volltext (URL)
  • Wiacek, C., Müller, S., Benndorf, D., (2006):
    A cytomic approach reveals population heterogeneity of Cupriavidus necator in response to harmful phenol concentrations
    Proteomics 6 (22), 5983 - 5994
    Volltext (URL)
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2005 (13)

  • Ferraroni, M., Seifert, J., Travkin, V.M., Thiel, M., Kaschabek, S., Scozzafava, A., Golovleva, L., Schlömann, M., Briganti, F., (2005):
    Crystal structure of the hydroxyquinol 1,2-dioxygenase from Nocardioides simplex 3E, a key enzyme involved in polychlorinated aromatics biodegradation
    J. Biol. Chem. 280 (22), 21144 - 21154
    Volltext (URL)
  • Fischer, W., Franke, H., Gröger-Arndt, H., Illes, P., (2005):
    Evidence for the existence of P2Y(12,4) receptor subtypes in HEK-293 cells: reactivation of P2Y(1) receptors after repetitive agonist application
    Naunyn-Schmiedebergs Arch. Pharmacol. 371 (6), 466 - 472
    Volltext (URL)
  • Guenther, A., Franke, H., Laemmer, A., Wirkner, K., Gröger-Arndt, H., Kruegel, U., Sperlágh, B., Wagner, A., Illes, P., Schneider, D., (2005):
    Role of P2X7 receptors in cerebral ischemia models in vitro and in vivo
    J. Neurol. Sci. 238 (Suppl. 1), S398
  • Kalkhof, S., Ihling, C., Mechtler, K., Sinz, A., (2005):
    Chemical cross-linking and high-performance Fourier transform ion cyclotron resonance mass spectrometry for protein interaction analysis: Application to a calmodulin/target peptide complex
    Anal. Chem. 77 (2), 495 - 503
    Volltext (URL)
  • Lorbiecke, R., Steffens, M., Tomm, J.M., Scholten, S., von Wiegen, P., Kranz, E., Wienand, U., Sauter, M., (2005):
    Phytosulphokine gene regulation during maize (Zea mays L.) reproduction
    J. Exp. Bot. 56 (417), 1805 - 1819
    Volltext (URL)
  • Mandelkow, E., von Bergen, M., Pickhardt, M., Gazova, Z., Khlistunova, I., Wang, Y.P., Biernat, J., Mandelkow, E.-M., (2005):
    Tau aggregation and Tau aggregation inhibitors
    J. Neurochem. 94 (Suppl. 2), 213 - 214
    Volltext (URL)
  • Mukrasch, M.D., Biernat, J., von Bergen, M., Griesinger, C., Mandelkow, E., Zweckstetter, M., (2005):
    Sites of tau important for aggregation populate β-structure and bind to microtubules and polyanions
    J. Biol. Chem. 280 (26), 24978 - 24986
    Volltext (URL)
  • Pickhardt, M., Gazova, Z., von Bergen, M., Khlistunova, I., Wang, Y.P., Hascher, A., Mandelkow, E.-M., Biernat, J., Mandelkow, E., (2005):
    Anthraquinones inhibit tau aggregation and dissolve Alzheimer's paired helical filaments in vitro and in cells
    J. Biol. Chem. 280 (5), 3628 - 3635
    Volltext (URL)
  • Schmidt, A., Kalkhof, S., Ihling, C., Cooper, D.M.F., Sinz, A., (2005):
    Mapping protein interfaces by chemical cross-linking and Fourier transform ion cyclotron resonance mass spectrometry: application to a calmodulin/adenylyl cyclase 8 peptide complex
    Eur. J. Mass Spectrom. 11 (5), 525 - 534
    Volltext (URL)
  • Sinz, A., Kalkhof, S., Ihling, C., (2005):
    Mapping protein interfaces by a trifunctional cross-linker combined with MALDI-TOF and ESI-FTICR mass spectrometry
    J. Am. Soc. Mass Spectrom. 16 (12), 1921 - 1931
    Volltext (URL)
  • Thiede, B., Höhenwarter, W., Krah, A., Mattow, J., Schmid, M., Schmidt, F., Jungblut, P.R., (2005):
    Peptide mass fingerprinting
    Methods 35 (3), 237 - 247
    Volltext (URL)
  • von Bergen, M., Barghorn, S., Biernat, J., Mandelkow, E.-M., Mandelkow, E., (2005):
    Tau aggregation is driven by a transition from random coil to beta sheet structure
    Biochim. Biophys. Acta-Mol. Basis Dis. 1739 (2-3), 158 - 166
    Volltext (URL)
  • Wirkner, K., Köfalvi, A., Fischer, W., Günther, A., Franke, H., Gröger-Arndt, H., Nörenberg, W., Madarász, E., Vizi, E.S., Schneider, D., Sperlágh, B., Illes, P., (2005):
    Supersensitivity of P2X7 receptors in cerebrocortical cell cultures after in vitro ischemia
    J. Neurochem. 95 (5), 1421 - 1437
    Volltext (URL)
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2004 (11)

  • Benndorf, D., Davidson, I., Babel, W., (2004):
    Regulation of catabolic enzymes during long-term exposure of Delftia acidovorans MC1 to chlorophenoxy herbicides
    Microbiology-(UK) 150 (4), 1005 - 1014
    Volltext (URL)
  • Benndorf, D., Loffhagen, N., Härtig, C., Babel, W., (2004):
    Growth on phenol at chemostress levels amplifies the expression of the phenol degradation pathway in Acinetobacter calcoaceticus
    Eng. Life Sci. 4 (1), 38 - 42
    Volltext (URL)
  • Berger, K., Wissmann, D., Ihling, C., Kalkhof, S., Beck-Sickinger, A., Sinz, A., Paschke, R., Führer, D., (2004):
    Quantitative proteome analysis in benign thyroid nodular disease using the fluorescent ruthenium II tris(bathophenanthroline disulfonate) stain
    Mol. Cell. Endocrinol. 227 (1-2), 21 - 30
    Volltext (URL)
  • Mandelkow, E., von Bergen, M., Barghorn, S., Li, L., Biernat, J., Mandelkow, E.-M., (2004):
    Principles of assembly of tau protein into Alzheimer paired helical filaments
    Neurobiol. Aging 25 (Suppl. 2), S47
    Volltext (URL)
  • Mandelkow, E., von Bergen, M., Pickhardt, M., Biernat, J., Mandelkow, E.-M., (2004):
    Treatment of tauopathies: How to approach it?
    Neurobiol. Aging 25 (Suppl. 1), S17
    Volltext (URL)
  • Mattow, J., Schmidt, F., Höhenwarter, W., Siejak, F., Schaible, U.E., Kaufmann, S.H.E., (2004):
    Protein identification and tracking in two-dimensional electrophoretic gels by minimal protein identifiers
    Proteomics 4 (10), 2927 - 2941
    Volltext (URL)
  • Meinhold-Heerlein, I., Mundhenke, C., Rosel, F., Jonat, W., Nagasaki, K., von Bergen, M., Maass, N., (2004):
    Protein profiling utilizing SELDI technology may detect ductal carcinoma in situ (DCIS) with high reliability in patient's serum
    J. Clin. Oncol. 22 (14S), 873
    Volltext (URL)
  • Pickhardt, M., Gazova, Z., von Bergen, M., Wang, Y.P., Khlistunova, I., Hascher, A., Biernat, J., Mandelkow, E.-M., (2004):
    Search for small molecule inhibitors of tau aggregation into Alzheimer paired helical filaments
    Neurobiol. Aging 25 (Suppl. 2), S428
    Volltext (URL)
  • Pleissner, K.P., Eifert, T., Buettner, S., Schmidt, F., Boehme, M., Meyer, T.F., Kaufmann, S.H.E., Jungblut, P.R., (2004):
    Web-accessible proteome databases for microbial research
    Proteomics 4 (5), 1305 - 1313
    Volltext (URL)
  • Santos, P.M., Benndorf, D., Sá-Correia, I., (2004):
    Insights into Pseudomonas putida KT2440 response to phenol-induced stress by quantitative proteomics
    Proteomics 4 (9), 2640 - 2652
    Volltext (URL)
  • von Bergen, M., Li, L., Mandelkow, E., (2004):
    Conformation and stability of tau and Alzheimer paired helical filaments probed by tryptophan scanning mutagenesis
    Neurobiol. Aging 25 (Suppl. 2), S419
    Volltext (URL)
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2003 (1)

  • Krayl, M., Benndorf, D., Loffhagen, N., Babel, W., (2003):
    Use of proteomics and physiological characteristics to elucidate ecotoxic effects of methyl tert-butyl ether in Pseudomonas putida KT2440
    Proteomics 3 (8), 1544 - 1552
    Volltext (URL)
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2002 (11)

  • Barghorn, S., von Bergen, M., Li, L., Biernat, J., Mandelkow, E.-M., Mandelkow, E., (2002):
    Some mutations of tau protein in frontotemporal dementia (FTDP-17) promote aggregation of paired helical filaments by enhancing local beta structure
    Neurobiol. Aging 23 (Suppl. 1), S528
    Volltext (URL)
  • Benndorf, D., (2002):
    Bewältigung von Chemostress durch Detoxifizierung
    Ehrenkolloquium anlässlich des 65. Geburtstages von Prof. Dr. habil. Wolfgang Babel, Leipzig, 18.7.2002
  • Benndorf, D., Babel, W., (2002):
    Assimilatory detoxification of herbicides by Delftia acidovorans MC1: Induction of two chlorocatechol 1,2-dioxygenases as response to chemostress
    Microbiology-(UK) 148 (9), 2883 - 2888
  • Li, L., von Bergen, M., Biernat, J., Mandelkow, E.-M., Mandelkow, E., (2002):
    Intrinsic fluorescence of tau as a probe of conformation and aggregation of Alzheimer paired helical filaments
    Mol. Biol. Cell 13 (Suppl. S), 325A
  • Li, L., von Bergen, M., Biernat, J., Mandelkow, E.-M., Mandelkow, E., (2002):
    Intrinsic fluorescence of tau as a marker for PHF aggregation and PHF inhibitors
    Neurobiol. Aging 23 (Suppl. 1), S292
    Volltext (URL)
  • Li, L., von Bergen, M., Mandelkow, E.-M., Mandelkow, E., (2002):
    Structure, stability, and aggregation of paired helical filaments from tau protein and FTDP-17 mutants probed by tryptophan scanning mutagenesis
    J. Biol. Chem. 277 (44), 41390 - 41400
    Volltext (URL)
  • Loffhagen, N., Härtig, C., Benndorf, D., Babel, W., (2002):
    Effects of growth temperature and lipophilic carbon sources on the fatty acid composition and membrane lipid fluidity of Acinetobacter calcoaceticus 69V
    Acta Biotechnol. 22 (3-4), 235 - 243
    Volltext (URL)
  • Mandelkow, E., von Bergen, M., Li, L., Barghorn, S., Biernat, J., Mandelkow, E.-M., (2002):
    Principles underlying the formation of Alzheimer paired helical filaments from tau protein: Hotspots of beta structure embedded in a random coil environment
    Neurobiol. Aging 23 (Suppl. 1), S551
    Volltext (URL)
  • Pickhardt, M., von Bergen, M., Li, L., Mandelkow, E.-M., Mandelkow, E., (2002):
    Searching for compounds that break Alzheimer-paired helical filaments
    Neurobiol. Aging 23 (Suppl. 1), S507
    Volltext (URL)
  • Soltmann, U., Wand, H., Müller, A., Kuschk, P., Stottmeister, U., (2002):
    Exposure to xenobiotics deeply affects the bacteriocenosis in the rhizosphere of helophytes
    Acta Biotechnol. 22 (1-2), 161 - 166
    Volltext (URL)
  • Westendorf, A., Benndorf, D., Müller, R.H., Babel, W., (2002):
    The two enantiospecific dichlorprop/a-ketoglutarate-dioxygenases from Delftia acidovorans MC1 - protein and sequence data of RdpA and SdpA
    Microbiol. Res. 157 (4), 317 - 322
    Volltext (URL)
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2001 (4)

  • Benndorf, D., Loffhagen, N., Babel, W., (2001):
    Protein synthesis patterns in Acinetobacter calcoaceticus induced by phenol and catechol show specificities of responses to chemostress
    FEMS Microbiol. Lett. 200 (2), 247 - 252
    Volltext (URL)
  • Mandelkow, E.-M., Stamer, K., Biernat, J., Trinczek, B., von Bergen, M., Mandelkow, E., (2001):
    Tau protein and Alzheimer's disease: aggregation; phosphorylation; and role in axonal traffic and neurite outgrowth
    J. Neurochem. 77 (Suppl. 1), 1
    Volltext (URL)
  • von Bergen, M., Barghorn, S., Li, L., Marx, A., Biernat, J., Mandelkow, E.-M., Mandelkow, E., (2001):
    Mutations of tau protein in frontotemporal dementia promote aggregation of paired helical filaments by enhancing local beta-structure
    J. Biol. Chem. 276 (51), 48165 - 48174
    Volltext (URL)
  • von Bergen, M., Li, L., Barghorn, S., Biernat, J., Mandelkow, E.-M., Mandelkow, E., (2001):
    Mutations of tau protein in frontotemporal dementia (FTDP-17) promote aggregation of paired helical filaments by enhancing local β-structure
    Mol. Biol. Cell 12 (Suppl. S), 308A
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2000 (5)

  • Barghorn, S., Zheng-Fischhofer, Q., Ackmann, M., Biernat, J., von Bergen, M., Mandelkow, E.-M., Mandelkow, E., (2000):
    Structure, microtubule interactions, and paired helical filament aggregation by tau mutants of frontotemporal dementias
    Biochemistry 39 (38), 11714 - 11721
    Volltext (URL)
  • Benndorf, D., (2000):
    Molekulare Mechanismen der Resistenz von Bakterien gegenüber Xenobiotika am Beispiel von Acinetobacter calcoaceticus 69-V
    Wissenschaftliches Kolloquium am UFZ Leipzig, Sektion Umweltmikrobiologie, Leipzig, 22.2.2000
  • Friedhoff, P., von Bergen, M., Mandelkow, E.-M., Mandelkow, E., (2000):
    Structure of tau protein and assembly into paired helical filaments
    Biochim. Biophys. Acta-Mol. Basis Dis. 1502 (1), 122 - 132
    Volltext (URL)
  • von Bergen, M., Friedhoff, P., Biernat, J., Heberle, J., Mandelkow, E.-M., Mandelkow, E., (2000):
    Assembly of τ protein into Alzheimer paired helical filaments depends on a local sequence motif (306VQIVYK311) forming β structure
    Mol. Biol. Cell 11 (Suppl. S), 363A
  • von Bergen, M., Friedhoff, P., Biernat, J., Heberle, J., Mandelkow, E.-M., Mandelkow, E., (2000):
    Assembly of τ protein into Alzheimer paired helical filaments depends on a local sequence motif (306VQIVYK311) forming β structure
    Proc. Natl. Acad. Sci. U.S.A. 97 (10), 5129 - 5134
    Volltext (URL)
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1999 (1)

  • Benndorf, D., Loffhagen, N., Babel, W., (1999):
    Induction of heat shock proteins in response to primary alcohols in Acinetobacter calcoaceticus
    Electrophoresis 20 (4-5), 781 - 789
    Volltext (URL)
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1997 (1)

  • Benndorf, D., Loffhagen, N., Babel, W., (1997):
    Chemicals and heat generate different protein patterns in Acinetobacter calcoaceticus
    J. Basic Microbiol. 37 (3), 167 - 174
    Volltext (URL)
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